CN103582887B - 提供核苷酸序列数据的方法和测序装置 - Google Patents

提供核苷酸序列数据的方法和测序装置 Download PDF

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Publication number
CN103582887B
CN103582887B CN201280027901.9A CN201280027901A CN103582887B CN 103582887 B CN103582887 B CN 103582887B CN 201280027901 A CN201280027901 A CN 201280027901A CN 103582887 B CN103582887 B CN 103582887B
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Prior art keywords
sequence
nucleic acid
data
probe
expected
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CN201280027901.9A
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English (en)
Chinese (zh)
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CN103582887A (zh
Inventor
P·J·范德扎格
R·安伯格
W·F·J·费尔哈格
P·拜尔莱因
R·伯特歇尔
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Koninklijke Philips NV
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Koninklijke Philips NV
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    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search

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  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Theoretical Computer Science (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Analytical Chemistry (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
CN201280027901.9A 2011-06-07 2012-04-17 提供核苷酸序列数据的方法和测序装置 Expired - Fee Related CN103582887B (zh)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
EP11168968.3 2011-06-07
EP11168968 2011-06-07
EP11195103.4 2011-12-22
EP11195103 2011-12-22
PCT/IB2012/051920 WO2012168803A2 (en) 2011-06-07 2012-04-17 Providing nucleotide sequence data

Publications (2)

Publication Number Publication Date
CN103582887A CN103582887A (zh) 2014-02-12
CN103582887B true CN103582887B (zh) 2017-07-04

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CN201280027901.9A Expired - Fee Related CN103582887B (zh) 2011-06-07 2012-04-17 提供核苷酸序列数据的方法和测序装置

Country Status (5)

Country Link
US (1) US10373705B2 (enExample)
EP (1) EP2718866B1 (enExample)
JP (1) JP6265891B2 (enExample)
CN (1) CN103582887B (enExample)
WO (1) WO2012168803A2 (enExample)

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AU2014348566B2 (en) * 2013-11-13 2019-02-28 Five3 Genomics, Llc Systems and methods for transmission and pre-processing of sequencing data
GB2520763A (en) 2013-12-02 2015-06-03 Vanadis Diagnostics Ab Nucleic acid probe and method of detecting genomic fragments
WO2015085350A1 (en) * 2013-12-10 2015-06-18 Conexio Genomics Pty Ltd Methods and probes for identifying gene alleles
ES2935285T3 (es) 2014-06-06 2023-03-03 Univ Cornell Método para identificación y enumeración de cambios en la secuencia de ácidos nucleicos, expresión, copia, o metilación de ADN, usando reacciones combinadas de nucleasa, ligasa, polimerasa y secuenciación
US10020300B2 (en) 2014-12-18 2018-07-10 Agilome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
US10006910B2 (en) 2014-12-18 2018-06-26 Agilome, Inc. Chemically-sensitive field effect transistors, systems, and methods for manufacturing and using the same
US9618474B2 (en) 2014-12-18 2017-04-11 Edico Genome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
US9857328B2 (en) 2014-12-18 2018-01-02 Agilome, Inc. Chemically-sensitive field effect transistors, systems and methods for manufacturing and using the same
US10429342B2 (en) 2014-12-18 2019-10-01 Edico Genome Corporation Chemically-sensitive field effect transistor
US9859394B2 (en) 2014-12-18 2018-01-02 Agilome, Inc. Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids
WO2017201081A1 (en) 2016-05-16 2017-11-23 Agilome, Inc. Graphene fet devices, systems, and methods of using the same for sequencing nucleic acids
JP7071341B2 (ja) * 2016-05-17 2022-05-18 ディーネーム－アイティー エンフェー 試料を識別する方法
US11393558B2 (en) * 2018-02-16 2022-07-19 University Of Virginia Patent Foundation Methods, circuits, systems, and articles of manufacture for searching a reference sequence for a target sequence within a specified distance
WO2021063904A1 (en) * 2019-10-01 2021-04-08 Koninklijke Philips N.V. System and methods for the efficient identification and extraction of sequence paths in genome graphs
CN111926065B (zh) * 2020-09-18 2021-01-29 中国科学院上海高等研究院 一种高效的核酸检测和基因测序方法及其装置
WO2023283420A2 (en) * 2021-07-09 2023-01-12 The Board Of Trustees Of The University Of Illinois Therapeutic gene silencing with crispr-cas13

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN101333564A (zh) * 2007-06-27 2008-12-31 上海仁度生物科技有限公司 提取、纯化靶核酸的方法及其应用
WO2010097775A1 (en) * 2009-02-27 2010-09-02 Koninklijke Philips Electronics N.V. Genomic selection and sequencing using encoded microcarriers

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US7244559B2 (en) 1999-09-16 2007-07-17 454 Life Sciences Corporation Method of sequencing a nucleic acid
JP2003515149A (ja) * 1999-11-26 2003-04-22 キュラジェン コーポレイション 核酸プローブアレイ
US20010051714A1 (en) 2000-01-10 2001-12-13 Shiping Chen Linear probe carrier
CZ20033143A3 (en) 2001-05-21 2004-04-14 Aclara Biosciences, Inc. Methods and compositions for analyzing proteins
GB0113358D0 (en) 2001-06-01 2001-07-25 Scient Generics Ltd Enhanced target capture
US20030231986A1 (en) 2002-06-18 2003-12-18 Eastman Kodak Company Micro-array identification means
US20050147976A1 (en) 2003-12-29 2005-07-07 Xing Su Methods for determining nucleotide sequence information
WO2006076650A2 (en) 2005-01-12 2006-07-20 Applera Corporation Compositions, methods, and kits for selective amplification of nucleic acids
JP5798320B2 (ja) 2007-09-24 2015-10-21 ノクソン・ファルマ・アクチエンゲゼルシャフト Ｃ５ａに結合する核酸
EP4450642A3 (en) 2008-01-17 2025-01-08 Sequenom, Inc. Single molecule nucleic acid sequence analysis processes and compositions
EP2426214A1 (en) 2010-09-01 2012-03-07 Koninklijke Philips Electronics N.V. Method for amplifying nucleic acids

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN101333564A (zh) * 2007-06-27 2008-12-31 上海仁度生物科技有限公司 提取、纯化靶核酸的方法及其应用
WO2010097775A1 (en) * 2009-02-27 2010-09-02 Koninklijke Philips Electronics N.V. Genomic selection and sequencing using encoded microcarriers

Also Published As

Publication number Publication date
US20140329690A1 (en) 2014-11-06
EP2718866B1 (en) 2020-09-09
JP6265891B2 (ja) 2018-01-24
JP2014518638A (ja) 2014-08-07
CN103582887A (zh) 2014-02-12
EP2718866A2 (en) 2014-04-16
US10373705B2 (en) 2019-08-06
WO2012168803A2 (en) 2012-12-13
WO2012168803A3 (en) 2013-07-04

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Granted publication date: 20170704