CA3088250A1 - Methods and compositions for discrete melt analysis - Google Patents

Methods and compositions for discrete melt analysis Download PDF

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Publication number
CA3088250A1
CA3088250A1 CA3088250A CA3088250A CA3088250A1 CA 3088250 A1 CA3088250 A1 CA 3088250A1 CA 3088250 A CA3088250 A CA 3088250A CA 3088250 A CA3088250 A CA 3088250A CA 3088250 A1 CA3088250 A1 CA 3088250A1
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Prior art keywords
nucleic acid
signal
target
probe
predetermined
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CA3088250A
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English (en)
French (fr)
Inventor
Douglas Whitman
Jennifer BERNIER
William Wang
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Luminex Corp
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Luminex Corp
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Publication of CA3088250A1 publication Critical patent/CA3088250A1/en
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6816Hybridisation assays characterised by the detection means
    • C12Q1/6823Release of bound markers
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    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6816Hybridisation assays characterised by the detection means
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/6851Quantitative amplification
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/686Polymerase chain reaction [PCR]
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12Q2525/00Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
    • C12Q2525/30Oligonucleotides characterised by their secondary structure
    • C12Q2525/301Hairpin oligonucleotides
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    • C12Q2527/00Reactions demanding special reaction conditions
    • C12Q2527/101Temperature
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    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2527/00Reactions demanding special reaction conditions
    • C12Q2527/107Temperature of melting, i.e. Tm
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12Q2527/00Reactions demanding special reaction conditions
    • C12Q2527/143Concentration of primer or probe
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2531/00Reactions of nucleic acids characterised by
    • C12Q2531/10Reactions of nucleic acids characterised by the purpose being amplify/increase the copy number of target nucleic acid
    • C12Q2531/113PCR

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  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Zoology (AREA)
  • Engineering & Computer Science (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Biophysics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
CA3088250A 2018-01-22 2019-01-22 Methods and compositions for discrete melt analysis Pending CA3088250A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201862620298P 2018-01-22 2018-01-22
US62/620,298 2018-01-22
PCT/US2019/014512 WO2019144107A1 (en) 2018-01-22 2019-01-22 Methods and compositions for discrete melt analysis

Publications (1)

Publication Number Publication Date
CA3088250A1 true CA3088250A1 (en) 2019-07-25

Family

ID=67298530

Family Applications (1)

Application Number Title Priority Date Filing Date
CA3088250A Pending CA3088250A1 (en) 2018-01-22 2019-01-22 Methods and compositions for discrete melt analysis

Country Status (9)

Country Link
US (2) US11390902B2 (enExample)
EP (1) EP3743211A4 (enExample)
JP (1) JP2021511056A (enExample)
KR (1) KR20200115552A (enExample)
CN (1) CN111629831A (enExample)
AU (1) AU2019209444A1 (enExample)
BR (1) BR112020014412A2 (enExample)
CA (1) CA3088250A1 (enExample)
WO (1) WO2019144107A1 (enExample)

Families Citing this family (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2021511056A (ja) * 2018-01-22 2021-05-06 ルミネックス コーポレーション 不連続融解分析のための方法および組成物
US11039089B2 (en) * 2019-03-27 2021-06-15 Indian Institute Of Technology Ropar Thermal imaging for identifying a defect in a material
AU2020395229A1 (en) * 2019-12-03 2022-06-23 Biofire Diagnostics, Llc System and method for identifying analytes in assay using normalized Tm values
WO2023023533A1 (en) 2021-08-19 2023-02-23 Luminex Corporation Digital amplification assay analysis method
US20250131748A1 (en) * 2021-09-14 2025-04-24 Combinati Incorporated Systems and methods for polymerase chain reaction quantification
US20230348957A1 (en) * 2021-12-07 2023-11-02 Luminex Corporation Methods and compositions for nucleic acid analysis
KR102750761B1 (ko) * 2021-12-29 2025-01-09 주식회사 한국인삼공사 배암차즈기를 판별하기 위한 단일염기다형성을 갖는 유전자 마커
WO2023235732A2 (en) * 2022-05-31 2023-12-07 Siemens Healthcare Diagnostics Inc. Methods and kits for determining antibiotic susceptibility
KR20260011156A (ko) * 2023-05-12 2026-01-22 라이프 테크놀로지스 코포레이션 다중 중합효소 연쇄반응 공정 및 데이터 분석을 위한 시스템 및 방법
WO2025179142A1 (en) * 2024-02-22 2025-08-28 Cepheid Maximizing optical channel capabilities for target detection

Family Cites Families (31)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5200313A (en) * 1983-08-05 1993-04-06 Miles Inc. Nucleic acid hybridization assay employing detectable anti-hybrid antibodies
JP3963422B2 (ja) * 2000-08-03 2007-08-22 日鉄環境エンジニアリング株式会社 核酸の測定方法
US7058184B1 (en) 2003-03-25 2006-06-06 Robert Hickling Acoustic measurement method and apparatus
US20050053950A1 (en) 2003-09-08 2005-03-10 Enrique Zudaire Ubani Protocol and software for multiplex real-time PCR quantification based on the different melting temperatures of amplicons
RU2460804C2 (ru) 2004-10-18 2012-09-10 Брандейс Юнивесити Способ гомогенной детекции по меньшей мере одного продукта одноцепочечной амплификации
ES2582602T3 (es) 2007-03-28 2016-09-14 Signal Diagnostics Sistema y método de análisis de alta resolución de ácidos nucleicos para detectar variaciones de secuencia
EP2291539B1 (en) 2008-06-25 2018-03-14 Okura, Michael Apparatus for melting curve analysis of nucleic acids in microarray format
CN102112632A (zh) 2008-08-08 2011-06-29 史密斯探测公司 用于pcr分析的检测算法
US9156010B2 (en) 2008-09-23 2015-10-13 Bio-Rad Laboratories, Inc. Droplet-based assay system
US9417190B2 (en) 2008-09-23 2016-08-16 Bio-Rad Laboratories, Inc. Calibrations and controls for droplet-based assays
CN102301007A (zh) 2008-12-10 2011-12-28 史密斯探测公司 使用随温度而变的杂交对核酸序列进行鉴定与区分
US8039215B2 (en) * 2009-03-10 2011-10-18 Roche Molecular Systems, Inc. Multiplex quantitative nucleic acid amplification and melting assay
WO2010132813A2 (en) * 2009-05-15 2010-11-18 Idaho Technology, Inc. Systems and methods for automated melting curve analysis
GB201017978D0 (en) * 2010-10-25 2010-12-08 Oxitec Ltd Multiplex amplification and detection
CN103459612A (zh) * 2010-12-03 2013-12-18 布兰代斯大学 用于检测野生型群体中的核酸突变体的方法和试剂盒
MX352460B (es) * 2011-01-11 2017-11-24 Seegene Inc Detección de secuencias de ácido nucleico objetivo mediante ensayo de escisión y extensión del pto.
EP2885431A4 (en) 2012-08-17 2016-07-13 Bio Nems Corp CLASSIFICATION OF A NUCLEIC ACID
WO2015023616A2 (en) 2013-08-12 2015-02-19 The Johns Hopkins University Method for comprehensive, quantitative, and highly sensitive discrimination of nucleic acid sequences in homogeneous and heterogeneous populations
WO2015031842A1 (en) * 2013-08-30 2015-03-05 University Of Utah Research Foundation A quantum method for fluorescence background removal in dna melting analysis
WO2015147370A1 (en) * 2014-03-28 2015-10-01 Seegene, Inc. Detection of target nucleic acid sequences using different detection temperatures
EP3180449B1 (en) 2014-08-11 2019-10-09 Luminex Corporation Probes for improved melt discrimination and multiplexing in nucleic acid assays
DK3237636T3 (da) * 2014-12-22 2021-01-25 Anapa Biotech As Dobbelt-quenching analyse til multiplex detektion af målnukleinsyrer
WO2016108954A1 (en) * 2014-12-30 2016-07-07 Telomere Diagnostics, Inc. Multiplex quantitative pcr
PL3298162T3 (pl) 2015-05-18 2020-07-27 Saga Diagnostics Ab Wykrywanie docelowego kwasu nukleinowego i wariantów
EP3957398A1 (en) 2015-09-29 2022-02-23 Life Technologies Corporation Systems and methods for performing digital pcr
CN108368547B (zh) * 2015-12-15 2022-04-05 Seegene株式会社 与靶核酸序列有关的信号提取
US11232851B2 (en) 2016-06-23 2022-01-25 Canon Information And Imaging Solutions, Inc. System and method for modeling and subtracting background signals from a melt curve
ES2893411T3 (es) 2016-09-15 2022-02-09 Hoffmann La Roche Procedimientos para realizar PCR multiplexada
EP3299470B1 (en) 2016-09-23 2019-10-30 Roche Diagniostics GmbH A method for reducing quantification errors caused by reaction volume deviations in digital polymerase chain reaction
AU2017363076B2 (en) 2016-11-17 2021-04-29 Combinati Incorporated Methods and systems for nucleic acid analysis and quantification
JP2021511056A (ja) * 2018-01-22 2021-05-06 ルミネックス コーポレーション 不連続融解分析のための方法および組成物

Also Published As

Publication number Publication date
BR112020014412A2 (pt) 2020-12-29
WO2019144107A1 (en) 2019-07-25
CN111629831A (zh) 2020-09-04
JP2021511056A (ja) 2021-05-06
EP3743211A1 (en) 2020-12-02
US11390902B2 (en) 2022-07-19
US20190226008A1 (en) 2019-07-25
AU2019209444A1 (en) 2020-07-30
KR20200115552A (ko) 2020-10-07
EP3743211A4 (en) 2021-11-24
US20220364148A1 (en) 2022-11-17

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