CA3026019C - "fluorescent dyes and their uses as biomarkers" - Google Patents
"fluorescent dyes and their uses as biomarkers" Download PDFInfo
- Publication number
- CA3026019C CA3026019C CA3026019A CA3026019A CA3026019C CA 3026019 C CA3026019 C CA 3026019C CA 3026019 A CA3026019 A CA 3026019A CA 3026019 A CA3026019 A CA 3026019A CA 3026019 C CA3026019 C CA 3026019C
- Authority
- CA
- Canada
- Prior art keywords
- optionally substituted
- compound
- alkyl
- group
- nucleotide
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
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Classifications
-
- C—CHEMISTRY; METALLURGY
- C09—DYES; PAINTS; POLISHES; NATURAL RESINS; ADHESIVES; COMPOSITIONS NOT OTHERWISE PROVIDED FOR; APPLICATIONS OF MATERIALS NOT OTHERWISE PROVIDED FOR
- C09B—ORGANIC DYES OR CLOSELY-RELATED COMPOUNDS FOR PRODUCING DYES, e.g. PIGMENTS; MORDANTS; LAKES
- C09B62/00—Reactive dyes, i.e. dyes which form covalent bonds with the substrates or which polymerise with themselves
- C09B62/02—Reactive dyes, i.e. dyes which form covalent bonds with the substrates or which polymerise with themselves with the reactive group directly attached to a heterocyclic ring
- C09B62/36—Reactive dyes, i.e. dyes which form covalent bonds with the substrates or which polymerise with themselves with the reactive group directly attached to a heterocyclic ring to some other heterocyclic ring
- C09B62/365—Specific dyes not provided for in groups C09B62/38 - C09B62/42
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D417/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
- C07D417/02—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings
- C07D417/04—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing two hetero rings directly linked by a ring-member-to-ring-member bond
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D491/00—Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00
- C07D491/02—Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00 in which the condensed system contains two hetero rings
- C07D491/04—Ortho-condensed systems
-
- C—CHEMISTRY; METALLURGY
- C09—DYES; PAINTS; POLISHES; NATURAL RESINS; ADHESIVES; COMPOSITIONS NOT OTHERWISE PROVIDED FOR; APPLICATIONS OF MATERIALS NOT OTHERWISE PROVIDED FOR
- C09K—MATERIALS FOR MISCELLANEOUS APPLICATIONS, NOT PROVIDED FOR ELSEWHERE
- C09K11/00—Luminescent materials, e.g. electroluminescent or chemiluminescent
- C09K11/06—Luminescent materials, e.g. electroluminescent or chemiluminescent containing organic luminescent materials
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C09—DYES; PAINTS; POLISHES; NATURAL RESINS; ADHESIVES; COMPOSITIONS NOT OTHERWISE PROVIDED FOR; APPLICATIONS OF MATERIALS NOT OTHERWISE PROVIDED FOR
- C09K—MATERIALS FOR MISCELLANEOUS APPLICATIONS, NOT PROVIDED FOR ELSEWHERE
- C09K2211/00—Chemical nature of organic luminescent or tenebrescent compounds
- C09K2211/10—Non-macromolecular compounds
- C09K2211/1018—Heterocyclic compounds
- C09K2211/1025—Heterocyclic compounds characterised by ligands
- C09K2211/1088—Heterocyclic compounds characterised by ligands containing oxygen as the only heteroatom
Landscapes
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- Engineering & Computer Science (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Materials Engineering (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Health & Medical Sciences (AREA)
- Molecular Biology (AREA)
- Physics & Mathematics (AREA)
- Immunology (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- Biophysics (AREA)
- General Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Genetics & Genomics (AREA)
- Analytical Chemistry (AREA)
- Plural Heterocyclic Compounds (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Nitrogen Condensed Heterocyclic Rings (AREA)
- Pyrane Compounds (AREA)
- Luminescent Compositions (AREA)
- Saccharide Compounds (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201662402635P | 2016-09-30 | 2016-09-30 | |
| US62/402,635 | 2016-09-30 | ||
| PCT/EP2017/074880 WO2018060482A1 (en) | 2016-09-30 | 2017-09-29 | New fluorescent dyes and their uses as biomarkers |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| CA3026019A1 CA3026019A1 (en) | 2018-04-05 |
| CA3026019C true CA3026019C (en) | 2022-05-17 |
Family
ID=60268333
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CA3026019A Active CA3026019C (en) | 2016-09-30 | 2017-09-29 | "fluorescent dyes and their uses as biomarkers" |
Country Status (11)
| Country | Link |
|---|---|
| US (3) | US10385214B2 (enExample) |
| EP (2) | EP3519410B1 (enExample) |
| JP (2) | JP7002478B2 (enExample) |
| KR (2) | KR102582172B1 (enExample) |
| CN (1) | CN109476654B (enExample) |
| AU (2) | AU2017335223B2 (enExample) |
| CA (1) | CA3026019C (enExample) |
| ES (2) | ES2914688T3 (enExample) |
| IL (2) | IL263871B2 (enExample) |
| SG (1) | SG11201810633WA (enExample) |
| WO (1) | WO2018060482A1 (enExample) |
Families Citing this family (44)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US10385214B2 (en) | 2016-09-30 | 2019-08-20 | Illumina Cambridge Limited | Fluorescent dyes and their uses as biomarkers |
| GB201716931D0 (en) * | 2017-10-16 | 2017-11-29 | Illumina Cambridge Ltd | New fluorescent compounds and their use as biomarkers |
| WO2020010495A1 (zh) * | 2018-07-09 | 2020-01-16 | 深圳华大智造极创科技有限公司 | 核酸测序方法 |
| US11293061B2 (en) | 2018-12-26 | 2022-04-05 | Illumina Cambridge Limited | Sequencing methods using nucleotides with 3′ AOM blocking group |
| CA3103636A1 (en) * | 2019-03-01 | 2020-09-10 | Illumina Cambridge Limited | Tertiary amine substituted coumarin compounds and their uses as fluorescent labels |
| CN112654681B (zh) * | 2019-03-01 | 2023-01-06 | 伊卢米纳剑桥有限公司 | 环外胺取代的香豆素化合物及其作为荧光标记物的用途 |
| NL2023327B1 (en) | 2019-03-01 | 2020-09-17 | Illumina Inc | Multiplexed fluorescent detection of analytes |
| WO2020178231A1 (en) | 2019-03-01 | 2020-09-10 | Illumina, Inc. | Multiplexed fluorescent detection of analytes |
| MY208607A (en) | 2019-11-27 | 2025-05-20 | Illumina Cambridge Ltd | Cyclooctatetraene containing dyes and compositions |
| IL297992B2 (en) | 2020-06-22 | 2025-03-01 | Illumina Cambridge Ltd | Nucleosides and nucleotides with 3' acetal blocking group |
| US11981964B2 (en) * | 2020-07-28 | 2024-05-14 | Illumina Cambridge Limited | Substituted coumarin dyes and uses as fluorescent labels |
| US20220195196A1 (en) | 2020-12-17 | 2022-06-23 | Illumina Cambridge Limited | Alkylpyridinium coumarin dyes and uses in sequencing applications |
| US20220195517A1 (en) | 2020-12-17 | 2022-06-23 | Illumina Cambridge Limited | Long stokes shift chromenoquinoline dyes and uses in sequencing applications |
| US20220195516A1 (en) | 2020-12-17 | 2022-06-23 | Illumina Cambridge Limited | Methods, systems and compositions for nucleic acid sequencing |
| US20220195518A1 (en) | 2020-12-22 | 2022-06-23 | Illumina Cambridge Limited | Methods and compositions for nucleic acid sequencing |
| CN114671842B (zh) * | 2020-12-24 | 2024-05-28 | 郑州思昆生物工程有限公司 | 一种荧光化合物及其制备方法、荧光修饰核苷酸、试剂盒 |
| AU2022277632A1 (en) | 2021-05-20 | 2023-11-09 | Illumina Cambridge Limited | Compositions and methods for sequencing by synthesis |
| US20220403450A1 (en) | 2021-06-03 | 2022-12-22 | Illumina Software, Inc. | Systems and methods for sequencing nucleotides using two optical channels |
| CN117580961A (zh) | 2021-09-01 | 2024-02-20 | Illumina公司 | 用于加速碱基判读的幅度调制 |
| US20230183799A1 (en) | 2021-12-10 | 2023-06-15 | Illumina, Inc. | Parallel sample and index sequencing |
| JP2025509651A (ja) | 2022-03-15 | 2025-04-11 | イルミナ インコーポレイテッド | 並行サンプル及びインデックス配列決定 |
| US20230304086A1 (en) | 2022-03-28 | 2023-09-28 | Illumina Cambridge Limited | Labeled avidin and methods for sequencing |
| US20230314322A1 (en) | 2022-03-29 | 2023-10-05 | Illumina, Inc. | Systems and methods of sequencing polynucleotides |
| CA3223128A1 (en) | 2022-03-31 | 2023-10-05 | Illumina, Inc. | Compositions and methods for improving sequencing signals |
| EP4499659A1 (en) | 2022-03-31 | 2025-02-05 | Illumina, Inc. | Nucleosides and nucleotides with 3' vinyl blocking group useful in sequencing by synthesis |
| US20230383342A1 (en) | 2022-05-31 | 2023-11-30 | Illumina Cambridge Limited | Compositions and methods for nucleic acid sequencing |
| CA3259955A1 (en) | 2022-06-28 | 2024-01-04 | Illumina, Inc. | FLUORESCENT DYES CONTAINING A FUSIONED BIS-TETRACYCLIC BORON HETEROCYCLE AND THEIR USES IN SEQUENCED |
| EP4594428A2 (en) | 2022-09-30 | 2025-08-06 | Illumina, Inc. | Compositions and methods for reducing photo damage during sequencing |
| AU2023409219A1 (en) | 2022-12-22 | 2024-10-03 | Illumina, Inc. | Palladium catalyst compositions and methods for sequencing by synthesis |
| WO2024137765A1 (en) | 2022-12-22 | 2024-06-27 | Illumina, Inc. | Transition-metal catalyst compositions and methods for sequencing by synthesis |
| US20240271206A1 (en) | 2022-12-27 | 2024-08-15 | Illumina, Inc. | Methods of sequencing using 3' allyl blocked nucleotides |
| US20240327910A1 (en) | 2023-03-29 | 2024-10-03 | Illumina, Inc. | Naphthalimide dyes and uses in nucleic acid sequencing |
| EP4689181A1 (en) | 2023-03-30 | 2026-02-11 | Illumina, Inc. | Compositions and methods for nucleic acid sequencing |
| US20250075269A1 (en) | 2023-08-31 | 2025-03-06 | Illumina, Inc. | Compositions and methods for nucleic acid sequencing |
| EP4781416A1 (en) | 2023-09-20 | 2026-07-29 | Illumina, Inc. | Methods for sequencing |
| EP4781417A1 (en) | 2023-09-20 | 2026-07-29 | Illumina, Inc. | Sequencing error identification and correction |
| US20250137048A1 (en) | 2023-10-26 | 2025-05-01 | Illumina, Inc. | 4,5-substituted naphthalimide dyes and uses in nucleic acid sequencing |
| US20250215493A1 (en) | 2023-12-28 | 2025-07-03 | Illumina, Inc. | Nucleotides with enzymatically cleavable 3'-o-glycoside blocking groups for sequencing |
| WO2025184226A1 (en) | 2024-02-28 | 2025-09-04 | Illumina, Inc. | Nucleotides with terminal phosphate capping |
| WO2025188906A1 (en) | 2024-03-08 | 2025-09-12 | Illumina, Inc. | Modified adenosine nucleotides |
| WO2025221895A1 (en) | 2024-04-19 | 2025-10-23 | Illumina, Inc. | Water soluble polymer scaffolds for dye labeling |
| WO2025230914A1 (en) | 2024-04-29 | 2025-11-06 | Illumina, Inc. | Nucleotides with enzyme-triggered self-immolative linkers for sequencing by synthesis |
| WO2026020407A1 (zh) * | 2024-07-25 | 2026-01-29 | 深圳华大智造科技股份有限公司 | 一种提高分辨率的分子探针、其修饰的核酸以及在基因测序中的应用 |
| WO2026136132A1 (en) | 2024-12-16 | 2026-06-25 | Illumina, Inc. | Multi-dye attached polyphosphodiester scaffolds for use in sequencing |
Family Cites Families (28)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| DE2411969A1 (de) * | 1974-03-13 | 1975-09-25 | Bayer Ag | Farbstofflaser |
| US5302509A (en) | 1989-08-14 | 1994-04-12 | Beckman Instruments, Inc. | Method for sequencing polynucleotides |
| US5846719A (en) | 1994-10-13 | 1998-12-08 | Lynx Therapeutics, Inc. | Oligonucleotide tags for sorting and identification |
| EP2327797B1 (en) | 1997-04-01 | 2015-11-25 | Illumina Cambridge Limited | Method of nucleic acid sequencing |
| US6465178B2 (en) | 1997-09-30 | 2002-10-15 | Surmodics, Inc. | Target molecule attachment to surfaces |
| US6485944B1 (en) | 1997-10-10 | 2002-11-26 | President And Fellows Of Harvard College | Replica amplification of nucleic acid arrays |
| AU770831B2 (en) | 1998-07-30 | 2004-03-04 | Solexa Ltd. | Arrayed biomolecules and their use in sequencing |
| GB0002310D0 (en) | 2000-02-01 | 2000-03-22 | Solexa Ltd | Polynucleotide sequencing |
| AR021833A1 (es) | 1998-09-30 | 2002-08-07 | Applied Research Systems | Metodos de amplificacion y secuenciacion de acido nucleico |
| US6391937B1 (en) | 1998-11-25 | 2002-05-21 | Motorola, Inc. | Polyacrylamide hydrogels and hydrogel arrays made from polyacrylamide reactive prepolymers |
| US6169185B1 (en) | 1999-02-25 | 2001-01-02 | Day-Glo Color Corp. | Ink jet printing inks |
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| US6372813B1 (en) | 1999-06-25 | 2002-04-16 | Motorola | Methods and compositions for attachment of biomolecules to solid supports, hydrogels, and hydrogel arrays |
| AU2001279244A1 (en) | 2000-08-09 | 2002-02-18 | Motorola, Inc. | The use and evaluation of a (2+2) photocycloaddition in immobilization of oligonucleotides on a three-dimensional hydrogel matrix |
| AU2003259350A1 (en) | 2002-08-23 | 2004-03-11 | Solexa Limited | Modified nucleotides for polynucleotide sequencing |
| EP3147292B1 (en) | 2002-08-23 | 2018-09-26 | Illumina Cambridge Limited | Labelled nucleotides |
| GB0321306D0 (en) | 2003-09-11 | 2003-10-15 | Solexa Ltd | Modified polymerases for improved incorporation of nucleotide analogues |
| GB0326073D0 (en) | 2003-11-07 | 2003-12-10 | Solexa Ltd | Improvements in or relating to polynucleotide arrays |
| EP2789383B1 (en) | 2004-01-07 | 2023-05-03 | Illumina Cambridge Limited | Molecular arrays |
| JP4990886B2 (ja) | 2005-05-10 | 2012-08-01 | ソレックサ リミテッド | 改良ポリメラーゼ |
| GB0517097D0 (en) | 2005-08-19 | 2005-09-28 | Solexa Ltd | Modified nucleosides and nucleotides and uses thereof |
| EP2021415B1 (en) | 2006-05-18 | 2017-03-15 | Illumina Cambridge Limited | Dye compounds and the use of their labelled conjugates |
| US9453258B2 (en) | 2011-09-23 | 2016-09-27 | Illumina, Inc. | Methods and compositions for nucleic acid sequencing |
| US9085698B2 (en) | 2011-09-23 | 2015-07-21 | Illumina Cambridge Limited | Dyes for labelling molecular ligands |
| US9012022B2 (en) | 2012-06-08 | 2015-04-21 | Illumina, Inc. | Polymer coatings |
| CN105263918B (zh) * | 2013-03-08 | 2018-05-18 | 伊鲁米纳剑桥有限公司 | 罗丹明化合物及其作为荧光标记物的用途 |
| ES2685549T3 (es) | 2013-03-15 | 2018-10-09 | Illumina Cambridge Limited | Nucleósidos o nucleótidos modificados |
| US10385214B2 (en) | 2016-09-30 | 2019-08-20 | Illumina Cambridge Limited | Fluorescent dyes and their uses as biomarkers |
-
2017
- 2017-09-28 US US15/719,216 patent/US10385214B2/en active Active
- 2017-09-29 IL IL263871A patent/IL263871B2/en unknown
- 2017-09-29 JP JP2018566882A patent/JP7002478B2/ja active Active
- 2017-09-29 KR KR1020227041740A patent/KR102582172B1/ko active Active
- 2017-09-29 ES ES17794669T patent/ES2914688T3/es active Active
- 2017-09-29 EP EP17794669.6A patent/EP3519410B1/en active Active
- 2017-09-29 KR KR1020187037385A patent/KR102473054B1/ko active Active
- 2017-09-29 AU AU2017335223A patent/AU2017335223B2/en active Active
- 2017-09-29 EP EP21195809.5A patent/EP3974425B1/en active Active
- 2017-09-29 CN CN201780042127.1A patent/CN109476654B/zh active Active
- 2017-09-29 CA CA3026019A patent/CA3026019C/en active Active
- 2017-09-29 SG SG11201810633WA patent/SG11201810633WA/en unknown
- 2017-09-29 ES ES21195809T patent/ES2988726T3/es active Active
- 2017-09-29 WO PCT/EP2017/074880 patent/WO2018060482A1/en not_active Ceased
- 2017-09-29 IL IL297749A patent/IL297749B2/en unknown
-
2019
- 2019-08-13 US US16/539,606 patent/US10844225B2/en active Active
-
2020
- 2020-11-17 US US16/950,705 patent/US11370920B2/en active Active
-
2021
- 2021-12-27 JP JP2021212730A patent/JP2022050495A/ja not_active Withdrawn
-
2022
- 2022-11-07 AU AU2022268273A patent/AU2022268273B2/en active Active
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