CA2480646C - Detection of dna-binding proteins - Google Patents

Detection of dna-binding proteins Download PDF

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Publication number
CA2480646C
CA2480646C CA2480646A CA2480646A CA2480646C CA 2480646 C CA2480646 C CA 2480646C CA 2480646 A CA2480646 A CA 2480646A CA 2480646 A CA2480646 A CA 2480646A CA 2480646 C CA2480646 C CA 2480646C
Authority
CA
Canada
Prior art keywords
detection
duplex
binding
protein
dna
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Fee Related
Application number
CA2480646A
Other languages
English (en)
French (fr)
Other versions
CA2480646A1 (en
Inventor
Peter A. Clausen
James G. Lazar
David P. Carlson
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Marligen Biosciences Inc
Original Assignee
Marligen Biosciences Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Marligen Biosciences Inc filed Critical Marligen Biosciences Inc
Publication of CA2480646A1 publication Critical patent/CA2480646A1/en
Application granted granted Critical
Publication of CA2480646C publication Critical patent/CA2480646C/en
Anticipated expiration legal-status Critical
Expired - Fee Related legal-status Critical Current

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/34—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving hydrolase
    • C12Q1/44—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving hydrolase involving esterase
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/5308—Immunoassay; Biospecific binding assay; Materials therefor for analytes not provided for elsewhere, e.g. nucleic acids, uric acid, worms, mites
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6875—Nucleoproteins
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435—Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/46—Assays involving biological materials from specific organisms or of a specific nature from animals; from humans from vertebrates
    • G01N2333/47—Assays involving proteins of known structure or function as defined in the subgroups
    • G01N2333/4701—Details
    • G01N2333/4703—Regulators; Modulating activity
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/90—Enzymes; Proenzymes
    • G01N2333/914—Hydrolases (3)
    • G01N2333/916—Hydrolases (3) acting on ester bonds (3.1), e.g. phosphatases (3.1.3), phospholipases C or phospholipases D (3.1.4)
    • G01N2333/922—Ribonucleases (RNAses); Deoxyribonucleases (DNAses)

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Chemical & Material Sciences (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Biomedical Technology (AREA)
  • Urology & Nephrology (AREA)
  • Hematology (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • Organic Chemistry (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • General Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Pathology (AREA)
  • Zoology (AREA)
  • General Physics & Mathematics (AREA)
  • Food Science & Technology (AREA)
  • Medicinal Chemistry (AREA)
  • Cell Biology (AREA)
  • Wood Science & Technology (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Peptides Or Proteins (AREA)
CA2480646A 2002-03-28 2003-03-28 Detection of dna-binding proteins Expired - Fee Related CA2480646C (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US36770302P 2002-03-28 2002-03-28
US60/367,703 2002-03-28
PCT/US2003/009604 WO2003083476A1 (en) 2002-03-28 2003-03-28 Detection of dna-binding proteins

Publications (2)

Publication Number Publication Date
CA2480646A1 CA2480646A1 (en) 2003-10-09
CA2480646C true CA2480646C (en) 2010-08-03

Family

ID=28675388

Family Applications (1)

Application Number Title Priority Date Filing Date
CA2480646A Expired - Fee Related CA2480646C (en) 2002-03-28 2003-03-28 Detection of dna-binding proteins

Country Status (9)

Country Link
US (2) US7122317B2 (enExample)
EP (1) EP1490682B1 (enExample)
JP (1) JP4425640B2 (enExample)
AT (1) ATE377753T1 (enExample)
AU (1) AU2003226116B2 (enExample)
CA (1) CA2480646C (enExample)
DE (1) DE60317315T2 (enExample)
DK (1) DK1490682T3 (enExample)
WO (1) WO2003083476A1 (enExample)

Families Citing this family (17)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AU2003226116B2 (en) * 2002-03-28 2010-04-01 Marligen Biosciences, Inc. Detection of DNA-binding proteins
WO2004074452A2 (en) * 2003-02-19 2004-09-02 The Regents Of The University Of California Multiplex mapping of protein interactions
US20060194215A1 (en) * 2005-02-28 2006-08-31 Kronick Mel N Methods, reagents and kits for reusing arrays
US20070015166A1 (en) * 2005-07-14 2007-01-18 Nilsen Thor W Lateral flow methods and devices for detection of nucleic acid binding proteins
JP2007222160A (ja) * 2006-01-26 2007-09-06 National Institute Of Advanced Industrial & Technology 生体由来試料中の蛋白質の解析方法
US7833716B2 (en) 2006-06-06 2010-11-16 Gen-Probe Incorporated Tagged oligonucleotides and their use in nucleic acid amplification methods
WO2008147899A1 (en) * 2007-05-23 2008-12-04 Oregon Health & Science University Microarray systems and methods for identifying dna-binding proteins
DE102011109063B3 (de) * 2011-07-28 2012-12-20 NMI Naturwissenschaftliches und Medizinisches Institut an der Universität Tübingen Verfahren zum Nachweis von Biomolekülen
GB201311057D0 (en) 2013-06-21 2013-08-07 Univ Greenwich Antisense oligonucleotide compositions
WO2015031628A1 (en) * 2013-08-28 2015-03-05 Oregon Health & Science University Synthetic oligonucleotides for detection of nucleic acid binding proteins
CN103472236B (zh) * 2013-09-11 2015-06-03 深圳先进技术研究院 Dna结合蛋白的检测方法
WO2016058171A1 (en) * 2014-10-17 2016-04-21 Shanghai Sidansai Biotechnology Co.,Ltd Method for directional cloning
US10527608B2 (en) 2017-06-13 2020-01-07 Genetics Research, Llc Methods for rare event detection
US10081829B1 (en) 2017-06-13 2018-09-25 Genetics Research, Llc Detection of targeted sequence regions
WO2018231955A2 (en) 2017-06-13 2018-12-20 Genetics Research, Llc, D/B/A Zs Genetics, Inc. Isolation of target nucleic acids
US10947599B2 (en) 2017-06-13 2021-03-16 Genetics Research, Llc Tumor mutation burden
US20180355380A1 (en) * 2017-06-13 2018-12-13 Genetics Research, Llc, D/B/A Zs Genetics, Inc. Methods and kits for quality control

Family Cites Families (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP0467078B1 (en) * 1990-07-18 1996-05-08 Abbott Laboratories An analyte-subtitute reagent for use in specific binding assay methods, devices and kits
US5518885A (en) * 1994-04-19 1996-05-21 The United States Of America As Represented By The Department Of Health & Human Services ERBB2 promoter binding protein in neoplastic disease
US5834236A (en) 1996-06-27 1998-11-10 The Salk Institute For Biological Studies AATT repeat transcription enhancer element
US5939261A (en) 1997-06-24 1999-08-17 Sarnoff Corporation Method for capturing a nucleic acid
US6312896B1 (en) 1998-09-17 2001-11-06 Igen Inaternational, Inc. Assays for measuring nucleic acid binding proteins and enzyme activities
US6297013B1 (en) * 1999-06-24 2001-10-02 Dnab Diagnostics Inc. Compositions and methods for determining the activity of DNA-binding proteins and of initiation of transcription
AU2003226116B2 (en) * 2002-03-28 2010-04-01 Marligen Biosciences, Inc. Detection of DNA-binding proteins

Also Published As

Publication number Publication date
US7122317B2 (en) 2006-10-17
AU2003226116A1 (en) 2003-10-13
EP1490682A4 (en) 2006-05-24
US20090208927A1 (en) 2009-08-20
US20030215854A1 (en) 2003-11-20
ATE377753T1 (de) 2007-11-15
CA2480646A1 (en) 2003-10-09
EP1490682B1 (en) 2007-11-07
WO2003083476A1 (en) 2003-10-09
DE60317315T2 (de) 2008-08-21
DK1490682T3 (da) 2008-03-25
EP1490682A1 (en) 2004-12-29
DE60317315D1 (de) 2007-12-20
JP2005521411A (ja) 2005-07-21
AU2003226116B2 (en) 2010-04-01
US7771940B2 (en) 2010-08-10
JP4425640B2 (ja) 2010-03-03

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Effective date: 20130328