BR112019011670A2 - purificação integrada e mensuração da metilação do dna e comensuração de mutações e/ou níveis de expressão de mrna em um cartucho de reação automático - Google Patents

purificação integrada e mensuração da metilação do dna e comensuração de mutações e/ou níveis de expressão de mrna em um cartucho de reação automático

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Publication number
BR112019011670A2
BR112019011670A2 BR112019011670A BR112019011670A BR112019011670A2 BR 112019011670 A2 BR112019011670 A2 BR 112019011670A2 BR 112019011670 A BR112019011670 A BR 112019011670A BR 112019011670 A BR112019011670 A BR 112019011670A BR 112019011670 A2 BR112019011670 A2 BR 112019011670A2
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Prior art keywords
nucleic acid
matrix material
dna
commensuration
dna methylation
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BR112019011670A
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English (en)
Inventor
A Gall Alexander
Kohlway Andrew
Wei-Lung Lai Edwin
Kocmond Kriszten
Van Atta Reuel
Higuchi Russell
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Cepheid
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Publication of BR112019011670A2 publication Critical patent/BR112019011670A2/pt

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    • GPHYSICS
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    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N35/00Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
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    • B01L3/50Containers for the purpose of retaining a material to be analysed, e.g. test tubes
    • B01L3/502Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01LCHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L7/00Heating or cooling apparatus; Heat insulating devices
    • B01L7/52Heating or cooling apparatus; Heat insulating devices with provision for submitting samples to a predetermined sequence of different temperatures, e.g. for treating nucleic acid samples
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    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1003Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor
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    • C12Q1/6844Nucleic acid amplification reactions
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    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
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    • B01L2300/18Means for temperature control
    • B01L2300/1805Conductive heating, heat from thermostatted solids is conducted to receptacles, e.g. heating plates, blocks
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    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
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    • B01L2400/0475Moving fluids with specific forces or mechanical means specific mechanical means and fluid pressure
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    • B01L3/50Containers for the purpose of retaining a material to be analysed, e.g. test tubes
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    • B01L3/5027Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip
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    • C12Q2531/00Reactions of nucleic acids characterised by
    • C12Q2531/10Reactions of nucleic acids characterised by the purpose being amplify/increase the copy number of target nucleic acid
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    • C12Q2537/00Reactions characterised by the reaction format or use of a specific feature
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    • C12Q2537/164Methylation detection other then bisulfite or methylation sensitive restriction endonucleases

Abstract

métodos para determinação da metilação do dna são fornecidos. em uma ilustrativa, mas não limitante modalidade, o método compreende i) colocar uma amostra biológica compreendendo um ácido nucleico, em contato com um primeiro material de matriz compreendendo uma primeira coluna ou filtro, em que o referido material de matriz liga-se e/ou filtra ácidos nucleicos na referida amostra, purificando, assim, o dna; ii) eluir o dna ligado proveniente do primeiro material de matriz e desnaturar o dna para produzir dna desnaturado eluído; iii) aquecer o dna eluído na presença de íons bissulfito para produzir um ácido nucleico desaminado; iv) colocar o referido ácido nucleico desaminado em contato com um segundo material de matriz compreendendo uma segunda coluna para ligar o referido ácido nucleico desaminado ao referido segundo material de matriz; v) dessulfonar o ácido nucleico desaminado ligado e/ou eluir e dessulfonar simultaneamente o ácido nucleico colocando o ácido nucleico desaminado em contato com uma solução alcalina para produzir um ácido nucleico convertido com bissulfito; vi) eluir o referido ácido nucleico convertido com bissulfito do referido segundo material de matriz.
BR112019011670A 2016-12-12 2017-12-12 purificação integrada e mensuração da metilação do dna e comensuração de mutações e/ou níveis de expressão de mrna em um cartucho de reação automático BR112019011670A2 (pt)

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US201662433165P 2016-12-12 2016-12-12
PCT/US2017/065905 WO2018111935A1 (en) 2016-12-12 2017-12-12 Integrated purification and measurement of dna methylation and co-measurement of mutations and/or mrna expression levels in an automated reaction cartridge

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BR112019011670A2 true BR112019011670A2 (pt) 2019-10-22

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US (2) US11260387B2 (pt)
EP (1) EP3551332B1 (pt)
JP (1) JP7123050B2 (pt)
KR (1) KR102479432B1 (pt)
CN (1) CN110267744A (pt)
AU (1) AU2017376118B2 (pt)
BR (1) BR112019011670A2 (pt)
CA (1) CA3046636A1 (pt)
MX (1) MX2019006628A (pt)
WO (1) WO2018111935A1 (pt)
ZA (1) ZA201903750B (pt)

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RU2019119086A3 (pt) 2021-05-07
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JP2020503858A (ja) 2020-02-06
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