BR112017016932B1 - método, sistema e mídia de armazenamento não transitório legível por computador para identificar um local de reação associado a uma curva de amplificação a partir de uma pluralidade de curvas de amplificação - Google Patents

método, sistema e mídia de armazenamento não transitório legível por computador para identificar um local de reação associado a uma curva de amplificação a partir de uma pluralidade de curvas de amplificação Download PDF

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Publication number
BR112017016932B1
BR112017016932B1 BR112017016932-0A BR112017016932A BR112017016932B1 BR 112017016932 B1 BR112017016932 B1 BR 112017016932B1 BR 112017016932 A BR112017016932 A BR 112017016932A BR 112017016932 B1 BR112017016932 B1 BR 112017016932B1
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Brazil
Prior art keywords
amplification curves
amplification
list
curves
view
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BR112017016932-0A
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English (en)
Portuguese (pt)
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BR112017016932A2 (en
Inventor
Scott Rickes
Lik Seng Lau
Kok Siong Teo
Zeng Wei Chu
Lian Seng Loh
Vanee Pho
Michael Uy
David Hoard
Sean Zimmerman
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Life Technologies Corporation
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Publication of BR112017016932A2 publication Critical patent/BR112017016932A2/en
Publication of BR112017016932B1 publication Critical patent/BR112017016932B1/pt

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    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T11/00—Two-dimensional [2D] image generation
    • G06T11/20—Drawing from basic elements
    • G06T11/26—Drawing of charts or graphs
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/686—Polymerase chain reaction [PCR]
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/645—Specially adapted constructive features of fluorimeters
    • G01N21/6452—Individual samples arranged in a regular 2D-array, e.g. multiwell plates
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F3/00—Input arrangements for transferring data to be processed into a form capable of being handled by the computer; Output arrangements for transferring data from processing unit to output unit, e.g. interface arrangements
    • G06F3/01—Input arrangements or combined input and output arrangements for interaction between user and computer
    • G06F3/048—Interaction techniques based on graphical user interfaces [GUI]
    • G06F3/0481—Interaction techniques based on graphical user interfaces [GUI] based on specific properties of the displayed interaction object or a metaphor-based environment, e.g. interaction with desktop elements like windows or icons, or assisted by a cursor's changing behaviour or appearance
    • G06F3/0482—Interaction with lists of selectable items, e.g. menus
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F3/00—Input arrangements for transferring data to be processed into a form capable of being handled by the computer; Output arrangements for transferring data from processing unit to output unit, e.g. interface arrangements
    • G06F3/01—Input arrangements or combined input and output arrangements for interaction between user and computer
    • G06F3/048—Interaction techniques based on graphical user interfaces [GUI]
    • G06F3/0484—Interaction techniques based on graphical user interfaces [GUI] for the control of specific functions or operations, e.g. selecting or manipulating an object, an image or a displayed text element, setting a parameter value or selecting a range
    • G06F3/04842—Selection of displayed objects or displayed text elements
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F3/00—Input arrangements for transferring data to be processed into a form capable of being handled by the computer; Output arrangements for transferring data from processing unit to output unit, e.g. interface arrangements
    • G06F3/01—Input arrangements or combined input and output arrangements for interaction between user and computer
    • G06F3/048—Interaction techniques based on graphical user interfaces [GUI]
    • G06F3/0484—Interaction techniques based on graphical user interfaces [GUI] for the control of specific functions or operations, e.g. selecting or manipulating an object, an image or a displayed text element, setting a parameter value or selecting a range
    • G06F3/0485—Scrolling or panning
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F3/00—Input arrangements for transferring data to be processed into a form capable of being handled by the computer; Output arrangements for transferring data from processing unit to output unit, e.g. interface arrangements
    • G06F3/01—Input arrangements or combined input and output arrangements for interaction between user and computer
    • G06F3/048—Interaction techniques based on graphical user interfaces [GUI]
    • G06F3/0487—Interaction techniques based on graphical user interfaces [GUI] using specific features provided by the input device, e.g. functions controlled by the rotation of a mouse with dual sensing arrangements, or of the nature of the input device, e.g. tap gestures based on pressure sensed by a digitiser
    • G06F3/0488—Interaction techniques based on graphical user interfaces [GUI] using specific features provided by the input device, e.g. functions controlled by the rotation of a mouse with dual sensing arrangements, or of the nature of the input device, e.g. tap gestures based on pressure sensed by a digitiser using a touch-screen or digitiser, e.g. input of commands through traced gestures
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T3/00—Geometric image transformations in the plane of the image
    • G06T3/40—Scaling of whole images or parts thereof, e.g. expanding or contracting
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/645—Specially adapted constructive features of fluorimeters
    • G01N21/6456—Spatial resolved fluorescence measurements; Imaging

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  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • General Physics & Mathematics (AREA)
  • Chemical & Material Sciences (AREA)
  • General Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • General Health & Medical Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • Pathology (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Human Computer Interaction (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Biophysics (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Optics & Photonics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Data Mining & Analysis (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Medical Informatics (AREA)
  • Organic Chemistry (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • Genetics & Genomics (AREA)
  • Biomedical Technology (AREA)
  • Medicinal Chemistry (AREA)
  • Hematology (AREA)
  • Urology & Nephrology (AREA)
  • Food Science & Technology (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Automatic Analysis And Handling Materials Therefor (AREA)
  • User Interface Of Digital Computer (AREA)
BR112017016932-0A 2015-02-06 2016-02-05 método, sistema e mídia de armazenamento não transitório legível por computador para identificar um local de reação associado a uma curva de amplificação a partir de uma pluralidade de curvas de amplificação BR112017016932B1 (pt)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201562113006P 2015-02-06 2015-02-06
US62/113,006 2015-02-06
PCT/US2016/016827 WO2016127086A1 (en) 2015-02-06 2016-02-05 Methods and systems for experiment design and analysis

Publications (2)

Publication Number Publication Date
BR112017016932A2 BR112017016932A2 (en) 2018-04-03
BR112017016932B1 true BR112017016932B1 (pt) 2021-04-20

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BR112017016932-0A BR112017016932B1 (pt) 2015-02-06 2016-02-05 método, sistema e mídia de armazenamento não transitório legível por computador para identificar um local de reação associado a uma curva de amplificação a partir de uma pluralidade de curvas de amplificação

Country Status (9)

Country Link
US (1) US10102653B2 (https=)
EP (1) EP3254086B1 (https=)
JP (1) JP6496417B2 (https=)
KR (1) KR102541746B1 (https=)
CN (1) CN107223249B (https=)
BR (1) BR112017016932B1 (https=)
RU (1) RU2719346C2 (https=)
SG (2) SG11201706356XA (https=)
WO (1) WO2016127086A1 (https=)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP3746225B1 (en) * 2018-01-29 2024-10-30 Gen-Probe Incorporated Analytical systems and methods
USD872109S1 (en) 2018-08-07 2020-01-07 Caterpillar Inc. Display screen or portion thereof with graphical user interface
USD1089275S1 (en) 2021-11-03 2025-08-19 Caterpillar Inc. Display screen or portion thereof with graphical user interface

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CA2329061C (en) * 1999-03-27 2006-11-14 Applied Biosystems, Llc Methods for exogenous, internal controls during nucleic acid amplification
US6518068B1 (en) * 1999-07-21 2003-02-11 Tropix, Inc. Luminescence detection workstation
CA2453360A1 (en) * 2001-07-11 2003-01-23 Applera Corporation Internal calibration standards for electrophoretic analyses
US7363168B2 (en) * 2001-10-02 2008-04-22 Stratagene California Adaptive baseline algorithm for quantitative PCR
US7315376B2 (en) * 2005-01-07 2008-01-01 Advanced Molecular Systems, Llc Fluorescence detection system
US7630849B2 (en) * 2005-09-01 2009-12-08 Applied Biosystems, Llc Method of automated calibration and diagnosis of laboratory instruments
US8473216B2 (en) * 2006-11-30 2013-06-25 Fluidigm Corporation Method and program for performing baseline correction of amplification curves in a PCR experiment
US8700381B2 (en) * 2009-04-16 2014-04-15 Koninklijke Philips N.V. Methods for nucleic acid quantification
US8754890B2 (en) * 2009-07-31 2014-06-17 Oracle International Corporation Graphical interface with data presence indicators
CN103038773B (zh) * 2010-04-08 2016-06-08 生命技术公司 通过角度配置搜索的用于基因分型的系统和方法
JP5908886B2 (ja) * 2010-04-09 2016-04-26 ライフ テクノロジーズ コーポレーション ｑＰＣＲ遺伝子型決定データ用の視覚化ツール
JP5848750B2 (ja) * 2010-04-11 2016-01-27 ライフ テクノロジーズ コーポレーション モデルベースのｑＰＣＲのためのシステムおよび方法
JP5959516B2 (ja) * 2010-08-18 2016-08-02 ライフ テクノロジーズ コーポレーション 電気化学的検出装置のためのマイクロウェルの化学コーティング法
CN103328520A (zh) * 2010-12-15 2013-09-25 阿克佐诺贝尔化学国际公司 用于纸张应用的含淀粉聚合物水分散体
WO2012106481A1 (en) * 2011-02-01 2012-08-09 Life Technologies Coporation Systems and methods for the analysis of protein melt curve data
KR20120103496A (ko) 2011-03-09 2012-09-19 삼성테크윈 주식회사 실시간 중합효소 연쇄 반응에 있어서 표준 곡선 및 임계값을 획득하는 방법
EP2760585A2 (en) * 2011-09-30 2014-08-06 Life Technologies Corporation Systems and methods for biological analysis
WO2013049443A1 (en) * 2011-09-30 2013-04-04 Life Technologies Corporation Methods and systems for visualizing and evaluating data

Also Published As

Publication number Publication date
RU2017131044A (ru) 2019-03-06
CN107223249A (zh) 2017-09-29
US10102653B2 (en) 2018-10-16
SG11201706356XA (en) 2017-09-28
BR112017016932A2 (en) 2018-04-03
JP2018506974A (ja) 2018-03-15
EP3254086B1 (en) 2020-08-05
CN107223249B (zh) 2021-06-18
WO2016127086A1 (en) 2016-08-11
KR102541746B1 (ko) 2023-06-09
JP6496417B2 (ja) 2019-04-03
SG10202006588UA (en) 2020-08-28
US20160239990A1 (en) 2016-08-18
KR20170135832A (ko) 2017-12-08
RU2719346C2 (ru) 2020-04-17
EP3254086A1 (en) 2017-12-13
RU2017131044A3 (https=) 2019-07-17

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Free format text: PRAZO DE VALIDADE: 20 (VINTE) ANOS CONTADOS A PARTIR DE 05/02/2016, OBSERVADAS AS CONDICOES LEGAIS.