BR112017016932B1 - método, sistema e mídia de armazenamento não transitório legível por computador para identificar um local de reação associado a uma curva de amplificação a partir de uma pluralidade de curvas de amplificação - Google Patents

método, sistema e mídia de armazenamento não transitório legível por computador para identificar um local de reação associado a uma curva de amplificação a partir de uma pluralidade de curvas de amplificação Download PDF

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Publication number
BR112017016932B1
BR112017016932B1 BR112017016932-0A BR112017016932A BR112017016932B1 BR 112017016932 B1 BR112017016932 B1 BR 112017016932B1 BR 112017016932 A BR112017016932 A BR 112017016932A BR 112017016932 B1 BR112017016932 B1 BR 112017016932B1
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Brazil
Prior art keywords
amplification curves
amplification
list
curves
view
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BR112017016932-0A
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English (en)
Portuguese (pt)
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BR112017016932A2 (pt
Inventor
Scott Rickes
Lik Seng Lau
Kok Siong Teo
Zeng Wei Chu
Lian Seng Loh
Vanee Pho
Michael Uy
David Hoard
Sean Zimmerman
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Life Technologies Corporation
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Publication of BR112017016932B1 publication Critical patent/BR112017016932B1/pt

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    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T11/00—2D [Two Dimensional] image generation
    • G06T11/20—Drawing from basic elements, e.g. lines or circles
    • G06T11/206—Drawing of charts or graphs
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/686—Polymerase chain reaction [PCR]
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/645—Specially adapted constructive features of fluorimeters
    • G01N21/6452—Individual samples arranged in a regular 2D-array, e.g. multiwell plates
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F3/00—Input arrangements for transferring data to be processed into a form capable of being handled by the computer; Output arrangements for transferring data from processing unit to output unit, e.g. interface arrangements
    • G06F3/01—Input arrangements or combined input and output arrangements for interaction between user and computer
    • G06F3/048—Interaction techniques based on graphical user interfaces [GUI]
    • G06F3/0481—Interaction techniques based on graphical user interfaces [GUI] based on specific properties of the displayed interaction object or a metaphor-based environment, e.g. interaction with desktop elements like windows or icons, or assisted by a cursor's changing behaviour or appearance
    • G06F3/0482—Interaction with lists of selectable items, e.g. menus
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F3/00—Input arrangements for transferring data to be processed into a form capable of being handled by the computer; Output arrangements for transferring data from processing unit to output unit, e.g. interface arrangements
    • G06F3/01—Input arrangements or combined input and output arrangements for interaction between user and computer
    • G06F3/048—Interaction techniques based on graphical user interfaces [GUI]
    • G06F3/0484—Interaction techniques based on graphical user interfaces [GUI] for the control of specific functions or operations, e.g. selecting or manipulating an object, an image or a displayed text element, setting a parameter value or selecting a range
    • G06F3/04842—Selection of displayed objects or displayed text elements
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F3/00—Input arrangements for transferring data to be processed into a form capable of being handled by the computer; Output arrangements for transferring data from processing unit to output unit, e.g. interface arrangements
    • G06F3/01—Input arrangements or combined input and output arrangements for interaction between user and computer
    • G06F3/048—Interaction techniques based on graphical user interfaces [GUI]
    • G06F3/0484—Interaction techniques based on graphical user interfaces [GUI] for the control of specific functions or operations, e.g. selecting or manipulating an object, an image or a displayed text element, setting a parameter value or selecting a range
    • G06F3/0485—Scrolling or panning
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F3/00—Input arrangements for transferring data to be processed into a form capable of being handled by the computer; Output arrangements for transferring data from processing unit to output unit, e.g. interface arrangements
    • G06F3/01—Input arrangements or combined input and output arrangements for interaction between user and computer
    • G06F3/048—Interaction techniques based on graphical user interfaces [GUI]
    • G06F3/0487—Interaction techniques based on graphical user interfaces [GUI] using specific features provided by the input device, e.g. functions controlled by the rotation of a mouse with dual sensing arrangements, or of the nature of the input device, e.g. tap gestures based on pressure sensed by a digitiser
    • G06F3/0488—Interaction techniques based on graphical user interfaces [GUI] using specific features provided by the input device, e.g. functions controlled by the rotation of a mouse with dual sensing arrangements, or of the nature of the input device, e.g. tap gestures based on pressure sensed by a digitiser using a touch-screen or digitiser, e.g. input of commands through traced gestures
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
    • G06T3/00—Geometric image transformations in the plane of the image
    • G06T3/40—Scaling of whole images or parts thereof, e.g. expanding or contracting
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/645—Specially adapted constructive features of fluorimeters
    • G01N21/6456—Spatial resolved fluorescence measurements; Imaging

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  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • General Physics & Mathematics (AREA)
  • Chemical & Material Sciences (AREA)
  • General Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • General Health & Medical Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • Pathology (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Human Computer Interaction (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Optics & Photonics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Data Mining & Analysis (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Medical Informatics (AREA)
  • Evolutionary Biology (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • Genetics & Genomics (AREA)
  • Urology & Nephrology (AREA)
  • Medicinal Chemistry (AREA)
  • Food Science & Technology (AREA)
  • Biomedical Technology (AREA)
  • Hematology (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Automatic Analysis And Handling Materials Therefor (AREA)
  • User Interface Of Digital Computer (AREA)
BR112017016932-0A 2015-02-06 2016-02-05 método, sistema e mídia de armazenamento não transitório legível por computador para identificar um local de reação associado a uma curva de amplificação a partir de uma pluralidade de curvas de amplificação BR112017016932B1 (pt)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201562113006P 2015-02-06 2015-02-06
US62/113,006 2015-02-06
PCT/US2016/016827 WO2016127086A1 (en) 2015-02-06 2016-02-05 Methods and systems for experiment design and analysis

Publications (2)

Publication Number Publication Date
BR112017016932A2 BR112017016932A2 (pt) 2018-04-03
BR112017016932B1 true BR112017016932B1 (pt) 2021-04-20

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BR112017016932-0A BR112017016932B1 (pt) 2015-02-06 2016-02-05 método, sistema e mídia de armazenamento não transitório legível por computador para identificar um local de reação associado a uma curva de amplificação a partir de uma pluralidade de curvas de amplificação

Country Status (9)

Country Link
US (1) US10102653B2 (enExample)
EP (1) EP3254086B1 (enExample)
JP (1) JP6496417B2 (enExample)
KR (1) KR102541746B1 (enExample)
CN (1) CN107223249B (enExample)
BR (1) BR112017016932B1 (enExample)
RU (1) RU2719346C2 (enExample)
SG (2) SG11201706356XA (enExample)
WO (1) WO2016127086A1 (enExample)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
DK3746225T3 (da) * 2018-01-29 2025-01-13 Gen Probe Inc Analytiske systemer og fremgangsmåder
USD872109S1 (en) 2018-08-07 2020-01-07 Caterpillar Inc. Display screen or portion thereof with graphical user interface
USD1089275S1 (en) 2021-11-03 2025-08-19 Caterpillar Inc. Display screen or portion thereof with graphical user interface

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* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP3942079B2 (ja) * 1999-03-27 2007-07-11 アプレラ コーポレイション 核酸増幅時の外因性コントロール、内部コントロールのための方法
EP1221038A4 (en) * 1999-07-21 2004-09-08 Applera Corp Luminescence detection workstation
CA2453360A1 (en) * 2001-07-11 2003-01-23 Applera Corporation Internal calibration standards for electrophoretic analyses
US7363168B2 (en) * 2001-10-02 2008-04-22 Stratagene California Adaptive baseline algorithm for quantitative PCR
US7315376B2 (en) * 2005-01-07 2008-01-01 Advanced Molecular Systems, Llc Fluorescence detection system
US7630849B2 (en) * 2005-09-01 2009-12-08 Applied Biosystems, Llc Method of automated calibration and diagnosis of laboratory instruments
WO2008067552A2 (en) * 2006-11-30 2008-06-05 Fluidigm Corporation Method and apparatus for biological sample analysis
EP2419846B1 (en) * 2009-04-16 2013-03-06 Koninklijke Philips Electronics N.V. Methods for nucleic acid quantification
US8754890B2 (en) * 2009-07-31 2014-06-17 Oracle International Corporation Graphical interface with data presence indicators
JP2013530434A (ja) * 2010-04-08 2013-07-25 ライフ テクノロジーズ コーポレーション 角度構成の検索による遺伝子型決定のためのシステムおよび方法
EP2556458B1 (en) * 2010-04-09 2020-06-03 Life Technologies Corporation VISUALIZATION TOOL FOR qPCR GENOTYPING DATA
CN103038774B (zh) * 2010-04-11 2017-09-22 生命技术公司 基于模型的qPCR的系统和方法
WO2012024500A1 (en) * 2010-08-18 2012-02-23 Life Technologies Corporation Chemical coating of microwell for electrochemical detection device
AU2011344385B2 (en) * 2010-12-15 2014-08-14 Kemira Oyj Aqueous starch containing polymer dispersion for paper applications
EP2671179B1 (en) * 2011-02-01 2019-05-01 Life Technologies Corporation Systems and methods for the analysis of protein melt curve data
KR20120103496A (ko) * 2011-03-09 2012-09-19 삼성테크윈 주식회사 실시간 중합효소 연쇄 반응에 있어서 표준 곡선 및 임계값을 획득하는 방법
SG10201602113TA (en) * 2011-09-30 2016-04-28 Life Technologies Corp Systems And Methods For Biological Analysis
US10453557B2 (en) * 2011-09-30 2019-10-22 Life Technologies Corporation Methods and systems for visualizing and evaluating data

Also Published As

Publication number Publication date
CN107223249B (zh) 2021-06-18
CN107223249A (zh) 2017-09-29
WO2016127086A1 (en) 2016-08-11
RU2719346C2 (ru) 2020-04-17
SG11201706356XA (en) 2017-09-28
KR102541746B1 (ko) 2023-06-09
JP6496417B2 (ja) 2019-04-03
US10102653B2 (en) 2018-10-16
US20160239990A1 (en) 2016-08-18
EP3254086B1 (en) 2020-08-05
JP2018506974A (ja) 2018-03-15
KR20170135832A (ko) 2017-12-08
BR112017016932A2 (pt) 2018-04-03
SG10202006588UA (en) 2020-08-28
EP3254086A1 (en) 2017-12-13
RU2017131044A (ru) 2019-03-06
RU2017131044A3 (enExample) 2019-07-17

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