AU2012212127B2 - Digital sequence analysis of DNA methylation - Google Patents
Digital sequence analysis of DNA methylation Download PDFInfo
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- AU2012212127B2 AU2012212127B2 AU2012212127A AU2012212127A AU2012212127B2 AU 2012212127 B2 AU2012212127 B2 AU 2012212127B2 AU 2012212127 A AU2012212127 A AU 2012212127A AU 2012212127 A AU2012212127 A AU 2012212127A AU 2012212127 B2 AU2012212127 B2 AU 2012212127B2
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- loci
- methylation
- nucleic acid
- cpg
- adenoma
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
- C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6858—Allele-specific amplification
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/154—Methylation markers
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- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Engineering & Computer Science (AREA)
- Immunology (AREA)
- Genetics & Genomics (AREA)
- Analytical Chemistry (AREA)
- Molecular Biology (AREA)
- General Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Pathology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Hospice & Palliative Care (AREA)
- Oncology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- General Chemical & Material Sciences (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201161438649P | 2011-02-02 | 2011-02-02 | |
| US61/438,649 | 2011-02-02 | ||
| PCT/US2012/023646 WO2012106525A2 (en) | 2011-02-02 | 2012-02-02 | Digital sequence analysis of dna methylation |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| AU2012212127A1 AU2012212127A1 (en) | 2013-08-22 |
| AU2012212127B2 true AU2012212127B2 (en) | 2016-06-02 |
Family
ID=46577813
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AU2012212127A Active AU2012212127B2 (en) | 2011-02-02 | 2012-02-02 | Digital sequence analysis of DNA methylation |
Country Status (8)
| Country | Link |
|---|---|
| US (5) | US9637792B2 (cg-RX-API-DMAC7.html) |
| EP (3) | EP2670893B1 (cg-RX-API-DMAC7.html) |
| JP (1) | JP2014519310A (cg-RX-API-DMAC7.html) |
| CN (2) | CN110129436A (cg-RX-API-DMAC7.html) |
| AU (1) | AU2012212127B2 (cg-RX-API-DMAC7.html) |
| CA (1) | CA2826696C (cg-RX-API-DMAC7.html) |
| ES (2) | ES2829198T3 (cg-RX-API-DMAC7.html) |
| WO (1) | WO2012106525A2 (cg-RX-API-DMAC7.html) |
Families Citing this family (27)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2009102788A2 (en) | 2008-02-15 | 2009-08-20 | Mayo Foundation For Medical Education And Research | Detecting neoplasm |
| US8361720B2 (en) | 2010-11-15 | 2013-01-29 | Exact Sciences Corporation | Real time cleavage assay |
| AU2012212127B2 (en) | 2011-02-02 | 2016-06-02 | Exact Sciences Corporation | Digital sequence analysis of DNA methylation |
| JP2015526096A (ja) * | 2012-08-31 | 2015-09-10 | 国防医学院Ｎａｔｉｏｎａｌ Ｄｅｆｅｎｓｅ Ｍｅｄｉｃａｌ Ｃｅｎｔｅｒ | 癌のスクリーニング方法 |
| WO2014046197A1 (ja) * | 2012-09-19 | 2014-03-27 | シスメックス株式会社 | 大腸癌に関する情報の取得方法、ならびに大腸癌に関する情報を取得するためのマーカーおよびキット |
| WO2015060609A2 (ko) * | 2013-10-21 | 2015-04-30 | 주식회사 바이오이즈 | 올리고뉴클레오타이드를 이용한 생체분자의 분석방법 및 장치 |
| WO2015066695A1 (en) | 2013-11-04 | 2015-05-07 | Exact Sciences Corporation | Multiple-control calibrators for dna quantitation |
| US10138524B2 (en) | 2013-12-19 | 2018-11-27 | Exact Sciences Development Company, Llc | Synthetic nucleic acid control molecules |
| WO2015153284A1 (en) | 2014-03-31 | 2015-10-08 | Mayo Foundation For Medical Education And Research | Detecting colorectal neoplasm |
| US10184154B2 (en) | 2014-09-26 | 2019-01-22 | Mayo Foundation For Medical Education And Research | Detecting cholangiocarcinoma |
| EP3274440A4 (en) | 2015-03-27 | 2019-03-06 | Exact Sciences Corporation | Detecting esophageal disorders |
| US10704081B2 (en) | 2015-10-30 | 2020-07-07 | Exact Sciences Development Company, Llc | Multiplex amplification detection assay |
| CN105603061A (zh) * | 2015-12-11 | 2016-05-25 | 宁云山 | 一种基于数字PCR技术检测人Septin 9基因甲基化的方法及所用探针与引物及其试剂盒 |
| DE102015226843B3 (de) * | 2015-12-30 | 2017-04-27 | Technische Universität Dresden | Verfahren und Mittel zur Diagnostik von Tumoren |
| WO2017201400A1 (en) * | 2016-05-19 | 2017-11-23 | The Regents Of The University Of California | Determination of cell types in mixtures using targeted bisulfite sequencing |
| EP3574110A4 (en) | 2017-01-27 | 2021-01-13 | Exact Sciences Development Company, LLC | DETECTION OF COLUMN NEOPLASIA BY ANALYSIS OF METHYLATED DNA |
| SG10202111266VA (en) | 2017-04-19 | 2021-11-29 | Singlera Genomics Inc | Compositions and methods for library construction and sequence analysis |
| CA3084584A1 (en) | 2017-11-30 | 2019-06-06 | Mayo Foundation For Medical Education And Research | Detecting breast cancer |
| US10648025B2 (en) | 2017-12-13 | 2020-05-12 | Exact Sciences Development Company, Llc | Multiplex amplification detection assay II |
| TW202434742A (zh) | 2018-03-13 | 2024-09-01 | 美商格瑞爾有限責任公司 | 異常片段偵測及分類 |
| CN108676878B (zh) * | 2018-05-23 | 2019-12-17 | 杭州诺辉健康科技有限公司 | 检测ndrg4基因甲基化位点的产品在制备结直肠癌早期检测的产品的用途 |
| US12234514B2 (en) | 2018-12-21 | 2025-02-25 | Grail, Inc. | Source of origin deconvolution based on methylation fragments in cell-free DNA samples |
| JP2022553575A (ja) | 2019-10-31 | 2022-12-23 | マヨ ファウンデーション フォア メディカル エデュケーション アンド リサーチ | 卵巣癌の検出 |
| CN115443507A (zh) * | 2020-02-28 | 2022-12-06 | 格里尔公司 | 鉴定可鉴别或指示癌症病状的甲基化模式 |
| CN112195243A (zh) * | 2020-09-22 | 2021-01-08 | 北京华大吉比爱生物技术有限公司 | 一种检测多基因甲基化的试剂盒及其应用 |
| CN114561464A (zh) * | 2021-12-20 | 2022-05-31 | 上海锐翌生物科技有限公司 | 用于进展期腺瘤诊断、检测或筛查的引物探针组及试剂盒 |
| CN114317775B (zh) * | 2022-01-12 | 2023-06-30 | 中国人民解放军军事科学院军事医学研究院 | 一种NCOA4的RNA m6A修饰作为γ射线辐射标志物的应用 |
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| WO2003064701A2 (en) * | 2002-01-30 | 2003-08-07 | Epigenomics Ag | Method for the analysis of cytosine methylation patterns |
| WO2010118016A2 (en) * | 2009-04-06 | 2010-10-14 | The Johns Hopkins University | Digital quantification of dna methylation |
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2012
- 2012-02-02 AU AU2012212127A patent/AU2012212127B2/en active Active
- 2012-02-02 CN CN201910145167.XA patent/CN110129436A/zh active Pending
- 2012-02-02 CA CA2826696A patent/CA2826696C/en active Active
- 2012-02-02 CN CN201280016745.6A patent/CN103703173A/zh active Pending
- 2012-02-02 JP JP2013552632A patent/JP2014519310A/ja active Pending
- 2012-02-02 US US13/364,978 patent/US9637792B2/en active Active
- 2012-02-02 ES ES18179746T patent/ES2829198T3/es active Active
- 2012-02-02 WO PCT/US2012/023646 patent/WO2012106525A2/en not_active Ceased
- 2012-02-02 ES ES12742758.1T patent/ES2686309T3/es active Active
- 2012-02-02 EP EP12742758.1A patent/EP2670893B1/en active Active
- 2012-02-02 EP EP20193533.5A patent/EP3795699B1/en active Active
- 2012-02-02 EP EP18179746.5A patent/EP3441479B1/en active Active
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- 2016-09-28 US US15/278,697 patent/US10519510B2/en active Active
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2019
- 2019-10-28 US US16/665,738 patent/US10870893B2/en active Active
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2020
- 2020-11-23 US US17/101,904 patent/US11952633B2/en active Active
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2024
- 2024-04-05 US US18/628,011 patent/US20240368702A1/en active Pending
Patent Citations (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2003044232A1 (en) * | 2001-11-16 | 2003-05-30 | The Johns Hopkins University School Of Medicine | Method of detection of prostate cancer |
| WO2003064701A2 (en) * | 2002-01-30 | 2003-08-07 | Epigenomics Ag | Method for the analysis of cytosine methylation patterns |
| WO2010118016A2 (en) * | 2009-04-06 | 2010-10-14 | The Johns Hopkins University | Digital quantification of dna methylation |
Non-Patent Citations (2)
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| AHLQUIST, D. A., Gastroenterology, 2010, vol. 138, pages 2127-2139 * |
| ZOU, H. et al., AACC Annual Meeting 2010, Abstract No. D-144, Clinical Chemistry, 2010, vol. 56, no. 6, Supplement, page A199 * |
Also Published As
| Publication number | Publication date |
|---|---|
| EP2670893A2 (en) | 2013-12-11 |
| CN110129436A (zh) | 2019-08-16 |
| US20200048720A1 (en) | 2020-02-13 |
| US20170073771A1 (en) | 2017-03-16 |
| CA2826696A1 (en) | 2012-08-09 |
| EP3441479B1 (en) | 2020-09-02 |
| EP3795699B1 (en) | 2023-12-20 |
| US11952633B2 (en) | 2024-04-09 |
| EP3441479A1 (en) | 2019-02-13 |
| ES2686309T3 (es) | 2018-10-17 |
| WO2012106525A3 (en) | 2014-02-20 |
| US20210095350A1 (en) | 2021-04-01 |
| US10870893B2 (en) | 2020-12-22 |
| JP2014519310A (ja) | 2014-08-14 |
| WO2012106525A2 (en) | 2012-08-09 |
| EP2670893A4 (en) | 2015-11-11 |
| US10519510B2 (en) | 2019-12-31 |
| US20120196756A1 (en) | 2012-08-02 |
| ES2829198T3 (es) | 2021-05-31 |
| EP3795699A1 (en) | 2021-03-24 |
| US9637792B2 (en) | 2017-05-02 |
| CA2826696C (en) | 2019-12-03 |
| AU2012212127A1 (en) | 2013-08-22 |
| US20240368702A1 (en) | 2024-11-07 |
| CN103703173A (zh) | 2014-04-02 |
| EP2670893B1 (en) | 2018-06-27 |
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