AU2008204338B2 - Circular chromosome conformation capture (4C) - Google Patents
Circular chromosome conformation capture (4C) Download PDFInfo
- Publication number
- AU2008204338B2 AU2008204338B2 AU2008204338A AU2008204338A AU2008204338B2 AU 2008204338 B2 AU2008204338 B2 AU 2008204338B2 AU 2008204338 A AU2008204338 A AU 2008204338A AU 2008204338 A AU2008204338 A AU 2008204338A AU 2008204338 B2 AU2008204338 B2 AU 2008204338B2
- Authority
- AU
- Australia
- Prior art keywords
- dna
- sequences
- target
- sequence
- restriction enzyme
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
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Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6816—Hybridisation assays characterised by the detection means
- C12Q1/6823—Release of bound markers
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- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Physics & Mathematics (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US99975007P | 2007-01-11 | 2007-01-11 | |
| US60/999,750 | 2007-01-11 | ||
| US97790007P | 2007-10-05 | 2007-10-05 | |
| US60/977,900 | 2007-10-05 | ||
| PCT/IB2008/000625 WO2008084405A2 (en) | 2007-01-11 | 2008-01-10 | Circular chromosome conformation capture (4c) |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| AU2008204338A1 AU2008204338A1 (en) | 2008-07-17 |
| AU2008204338A8 AU2008204338A8 (en) | 2009-08-06 |
| AU2008204338B2 true AU2008204338B2 (en) | 2014-03-06 |
Family
ID=39609120
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AU2008204338A Active AU2008204338B2 (en) | 2007-01-11 | 2008-01-10 | Circular chromosome conformation capture (4C) |
Country Status (10)
| Country | Link |
|---|---|
| US (1) | US8642295B2 (https=) |
| EP (1) | EP2121977B1 (https=) |
| JP (1) | JP5690068B2 (https=) |
| CN (1) | CN101688237A (https=) |
| AU (1) | AU2008204338B2 (https=) |
| BR (1) | BRPI0806565A2 (https=) |
| DK (1) | DK2121977T3 (https=) |
| ES (1) | ES2634266T3 (https=) |
| PT (1) | PT2121977T (https=) |
| WO (1) | WO2008084405A2 (https=) |
Families Citing this family (84)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CA2614118C (en) * | 2005-07-04 | 2013-11-26 | Erasmus University Medical Center | 4c |
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| HUE052213T2 (hu) | 2009-11-06 | 2021-04-28 | Univ Leland Stanford Junior | Grafitkilökõdés nem invazív diagnosztizálása szervátültetett betegekben |
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| US9677118B2 (en) | 2014-04-21 | 2017-06-13 | Natera, Inc. | Methods for simultaneous amplification of target loci |
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| EP2572003A4 (en) | 2010-05-18 | 2016-01-13 | Natera Inc | METHOD FOR NONINVASIVE PRANATAL PLOIDIE ASSIGNMENT |
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| AU2012211957B2 (en) | 2011-02-04 | 2017-02-23 | The Trustees Of The University Of Pennsylvania | A method for detecting chromosome structure and gene expression simultaneously in single cells |
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| EP3885446A1 (en) | 2013-02-01 | 2021-09-29 | The Regents of The University of California | Methods for genome assembly and haplotype phasing |
| US9411930B2 (en) | 2013-02-01 | 2016-08-09 | The Regents Of The University Of California | Methods for genome assembly and haplotype phasing |
| WO2014144491A1 (en) * | 2013-03-15 | 2014-09-18 | The Broad Institute, Inc | Methods for determining multiple interactions between nucleic acids in a cell |
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| GB2517936B (en) * | 2013-09-05 | 2016-10-19 | Babraham Inst | Chromosome conformation capture method including selection and enrichment steps |
| EP3049557B1 (en) | 2013-09-27 | 2021-05-05 | University of Washington | Methods and systems for large scale scaffolding of genome assemblies |
| GB201320351D0 (en) * | 2013-11-18 | 2014-01-01 | Erasmus Universiteit Medisch Ct | Method |
| EP3957749A1 (en) | 2014-04-21 | 2022-02-23 | Natera, Inc. | Detecting tumour specific mutations in biopsies with whole exome sequencing and in cell-free samples |
| US20180173845A1 (en) | 2014-06-05 | 2018-06-21 | Natera, Inc. | Systems and Methods for Detection of Aneuploidy |
| CA2956925C (en) | 2014-08-01 | 2024-02-13 | Dovetail Genomics, Llc | Tagging nucleic acids for sequence assembly |
| EP3201350B1 (en) * | 2014-09-30 | 2020-12-02 | Global Life Sciences Solutions USA LLC | Method for nucleic acid analysis directly from an unpurified biological sample |
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| EP3889260A1 (en) | 2014-12-12 | 2021-10-06 | The Broad Institute, Inc. | Protected guide rnas (pgrnas) |
| WO2016094874A1 (en) | 2014-12-12 | 2016-06-16 | The Broad Institute Inc. | Escorted and functionalized guides for crispr-cas systems |
| WO2016106244A1 (en) | 2014-12-24 | 2016-06-30 | The Broad Institute Inc. | Crispr having or associated with destabilization domains |
| NZ734854A (en) | 2015-02-17 | 2022-11-25 | Dovetail Genomics Llc | Nucleic acid sequence assembly |
| US11807896B2 (en) | 2015-03-26 | 2023-11-07 | Dovetail Genomics, Llc | Physical linkage preservation in DNA storage |
| WO2016182893A1 (en) | 2015-05-08 | 2016-11-17 | Teh Broad Institute Inc. | Functional genomics using crispr-cas systems for saturating mutagenesis of non-coding elements, compositions, methods, libraries and applications thereof |
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| CA3012607A1 (en) | 2015-06-18 | 2016-12-22 | The Broad Institute Inc. | Crispr enzymes and systems |
| EP4159856A1 (en) | 2015-06-18 | 2023-04-05 | The Broad Institute, Inc. | Novel crispr enzymes and systems |
| US9790490B2 (en) | 2015-06-18 | 2017-10-17 | The Broad Institute Inc. | CRISPR enzymes and systems |
| US11802305B2 (en) | 2015-06-24 | 2023-10-31 | Oxford BioDynamics PLC | Detection processes using sites of chromosome interaction |
| WO2017061861A1 (en) * | 2015-10-05 | 2017-04-13 | Koninklijke Nederlandse Akademie Van Wetenschappen | Targeted locus amplification using cloning strategies |
| CA3002740A1 (en) | 2015-10-19 | 2017-04-27 | Dovetail Genomics, Llc | Methods for genome assembly, haplotype phasing, and target independent nucleic acid detection |
| EP3368687B1 (en) | 2015-10-27 | 2021-09-29 | The Broad Institute, Inc. | Compositions and methods for targeting cancer-specific sequence variations |
| WO2017106657A1 (en) | 2015-12-18 | 2017-06-22 | The Broad Institute Inc. | Novel crispr enzymes and systems |
| JP7441003B2 (ja) | 2016-02-23 | 2024-02-29 | ダブテイル ゲノミクス エルエルシー | ゲノムアセンブリのためのフェージングされたリードセットの生成とハプロタイプフェージング |
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| CN110225981B (zh) | 2016-12-23 | 2024-03-15 | 牛津生物动力有限责任公司 | 分型方法 |
| CN107058484B (zh) * | 2016-12-26 | 2020-06-16 | 孙涛 | 一种应用于高通量测序同时检测t细胞和b细胞免疫组库的引物组合及试剂盒 |
| US20210293783A1 (en) | 2017-04-18 | 2021-09-23 | The General Hospital Corporation | Compositions for detecting secretion and methods of use |
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| JP2021506342A (ja) | 2017-12-14 | 2021-02-22 | ティーエーアイ ダイアグノスティックス インコーポレイテッドTai Diagnostics,Inc. | 移植のための移植片適合性の評価 |
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| CN109609611A (zh) * | 2018-12-26 | 2019-04-12 | 上海优甲医疗科技有限公司 | 一种基于高通量测序技术的基因定量测序方法 |
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| CN115803447A (zh) | 2020-04-23 | 2023-03-14 | 荷兰皇家科学院 | 染色体邻近实验中的结构变异检测 |
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Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2007004057A2 (en) * | 2005-07-04 | 2007-01-11 | Erasmus University Medical Center | Chromosome conformation capture-on-chip (4c) assay |
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| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| NL154598B (nl) | 1970-11-10 | 1977-09-15 | Organon Nv | Werkwijze voor het aantonen en bepalen van laagmoleculire verbindingen en van eiwitten die deze verbindingen specifiek kunnen binden, alsmede testverpakking. |
| US3817837A (en) | 1971-05-14 | 1974-06-18 | Syva Corp | Enzyme amplification assay |
| US3939350A (en) | 1974-04-29 | 1976-02-17 | Board Of Trustees Of The Leland Stanford Junior University | Fluorescent immunoassay employing total reflection for activation |
| US3996345A (en) | 1974-08-12 | 1976-12-07 | Syva Company | Fluorescence quenching with immunological pairs in immunoassays |
| US4275149A (en) | 1978-11-24 | 1981-06-23 | Syva Company | Macromolecular environment control in specific receptor assays |
| US4277437A (en) | 1978-04-05 | 1981-07-07 | Syva Company | Kit for carrying out chemically induced fluorescence immunoassay |
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| US4683202A (en) | 1985-03-28 | 1987-07-28 | Cetus Corporation | Process for amplifying nucleic acid sequences |
| US4965188A (en) | 1986-08-22 | 1990-10-23 | Cetus Corporation | Process for amplifying, detecting, and/or cloning nucleic acid sequences using a thermostable enzyme |
| GB8607679D0 (en) | 1986-03-27 | 1986-04-30 | Winter G P | Recombinant dna product |
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| US5795716A (en) | 1994-10-21 | 1998-08-18 | Chee; Mark S. | Computer-aided visualization and analysis system for sequence evaluation |
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-
2008
- 2008-01-10 US US12/522,555 patent/US8642295B2/en active Active
- 2008-01-10 EP EP08719319.9A patent/EP2121977B1/en active Active
- 2008-01-10 AU AU2008204338A patent/AU2008204338B2/en active Active
- 2008-01-10 DK DK08719319.9T patent/DK2121977T3/en active
- 2008-01-10 BR BRPI0806565-9A patent/BRPI0806565A2/pt not_active Application Discontinuation
- 2008-01-10 PT PT87193199T patent/PT2121977T/pt unknown
- 2008-01-10 CN CN200880008027A patent/CN101688237A/zh active Pending
- 2008-01-10 JP JP2009545253A patent/JP5690068B2/ja active Active
- 2008-01-10 WO PCT/IB2008/000625 patent/WO2008084405A2/en not_active Ceased
- 2008-01-10 ES ES08719319.9T patent/ES2634266T3/es active Active
Patent Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2007004057A2 (en) * | 2005-07-04 | 2007-01-11 | Erasmus University Medical Center | Chromosome conformation capture-on-chip (4c) assay |
Non-Patent Citations (3)
| Title |
|---|
| SIMONIS, M. et al., Nature Genetics, 2006, vol. 38, no. 11, pages 1348-1354 * |
| WURTELE, H. et al., Chromosome Research, 2006, vol. 14, pages 477-495 * |
| ZHAO, Z. et al., Nature Genetics, 2006, vol. 38, no. 11, pages 1341-1347 * |
Also Published As
| Publication number | Publication date |
|---|---|
| CN101688237A (zh) | 2010-03-31 |
| EP2121977A2 (en) | 2009-11-25 |
| JP5690068B2 (ja) | 2015-03-25 |
| WO2008084405A3 (en) | 2009-01-29 |
| US20100062947A1 (en) | 2010-03-11 |
| PT2121977T (pt) | 2017-08-18 |
| ES2634266T3 (es) | 2017-09-27 |
| WO2008084405A2 (en) | 2008-07-17 |
| DK2121977T3 (en) | 2017-09-18 |
| JP2010515449A (ja) | 2010-05-13 |
| AU2008204338A1 (en) | 2008-07-17 |
| AU2008204338A8 (en) | 2009-08-06 |
| BRPI0806565A2 (pt) | 2014-05-06 |
| US8642295B2 (en) | 2014-02-04 |
| EP2121977B1 (en) | 2017-06-21 |
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| TH | Corrigenda |
Free format text: IN VOL 23, NO 29, PAGE(S) 9329 UNDER THE HEADING PCT APPLICATIONS THAT HAVE ENTERED THE NATIONAL PHASE - NAME INDEX UNDER THE NAME ERASMUS UNIVERSITY MEDICAL CENTER, APPLICATION NO. 2008204338, UNDER INID (54) CORRECT THE TITLE TO READ CIRCULAR CHROMOSOME CONFORMATION CAPTURE (4C). |
|
| FGA | Letters patent sealed or granted (standard patent) | ||
| MK14 | Patent ceased section 143(a) (annual fees not paid) or expired | ||
| NA | Applications received for extensions of time, section 223 |
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