AU2001269796A1 - Method of identifying and quantifying specific fungi and bacteria - Google Patents

Method of identifying and quantifying specific fungi and bacteria

Info

Publication number
AU2001269796A1
AU2001269796A1 AU2001269796A AU6979601A AU2001269796A1 AU 2001269796 A1 AU2001269796 A1 AU 2001269796A1 AU 2001269796 A AU2001269796 A AU 2001269796A AU 6979601 A AU6979601 A AU 6979601A AU 2001269796 A1 AU2001269796 A1 AU 2001269796A1
Authority
AU
Australia
Prior art keywords
bacteria
identifying
quantifying specific
specific fungi
fungi
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
AU2001269796A
Other languages
English (en)
Inventor
Richard Haugland
Stephen Joseph Vesper
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
US Environmental Protection Agency
Original Assignee
US Environmental Protection Agency
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by US Environmental Protection Agency filed Critical US Environmental Protection Agency
Publication of AU2001269796A1 publication Critical patent/AU2001269796A1/en
Abandoned legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/6895—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10S435/00—Chemistry: molecular biology and microbiology
    • Y10S435/8215—Microorganisms
    • Y10S435/822—Microorganisms using bacteria or actinomycetales
    • Y10S435/848—Escherichia
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10S435/00—Chemistry: molecular biology and microbiology
    • Y10S435/8215—Microorganisms
    • Y10S435/822—Microorganisms using bacteria or actinomycetales
    • Y10S435/848—Escherichia
    • Y10S435/849—Escherichia coli
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10S435/00—Chemistry: molecular biology and microbiology
    • Y10S435/8215—Microorganisms
    • Y10S435/911—Microorganisms using fungi
    • Y10S435/913—Aspergillus
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10S435/00—Chemistry: molecular biology and microbiology
    • Y10S435/968—High energy substrates, e.g. fluorescent, chemiluminescent, radioactive
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10S435/00—Chemistry: molecular biology and microbiology
    • Y10S435/973—Simultaneous determination of more than one analyte

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Botany (AREA)
  • Mycology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
AU2001269796A 2000-06-13 2001-06-13 Method of identifying and quantifying specific fungi and bacteria Abandoned AU2001269796A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US09/593,012 US6387652B1 (en) 1998-04-15 2000-06-13 Method of identifying and quantifying specific fungi and bacteria
US09/593,012 2000-06-13
PCT/US2001/018892 WO2001096612A2 (en) 2000-06-13 2001-06-13 Method of identifying and quantifying specific fungi and bacteria

Publications (1)

Publication Number Publication Date
AU2001269796A1 true AU2001269796A1 (en) 2001-12-24

Family

ID=24372990

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2001269796A Abandoned AU2001269796A1 (en) 2000-06-13 2001-06-13 Method of identifying and quantifying specific fungi and bacteria

Country Status (5)

Country Link
US (1) US6387652B1 (de)
EP (2) EP1484416A3 (de)
AU (1) AU2001269796A1 (de)
CA (1) CA2412993A1 (de)
WO (1) WO2001096612A2 (de)

Families Citing this family (41)

* Cited by examiner, † Cited by third party
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US6387652B1 (en) * 1998-04-15 2002-05-14 U.S. Environmental Protection Agency Method of identifying and quantifying specific fungi and bacteria
US6733999B2 (en) * 2001-03-29 2004-05-11 University Of Nevada Method for detection of Stachybotrys chartarum in pure culture and field samples using quantitative polymerase chain reaction
US7094541B2 (en) 2001-08-31 2006-08-22 Gen-Probe Incorporated Assay for detection of human parvovirus B19 nucleic acid
ATE449185T1 (de) 2001-09-26 2009-12-15 Us Gov Health & Human Serv Nukleinsäuren zur identifizierung von pilzen und verfahren zu deren verwendung
ES2270644B1 (es) * 2002-03-11 2008-04-16 Universidad De Sevilla Metodo para la deteccion e identificacion rapida de shigella spp. mediante la reaccion en cadena de la polimerasa en tiempo real.
ES2223215B1 (es) * 2002-03-11 2006-04-16 Universidad De Sevilla Metodo para la deteccion e identificacion rapido de bacillus cereus mediante la reaccion en cadena de la polimerasa en tiempo real.
US20040010504A1 (en) * 2002-05-15 2004-01-15 Hinrichs Steven H. Custom sequence databases and methods of use thereof
US6951726B2 (en) * 2002-09-24 2005-10-04 Mississippi State University Real-time PCR assay of the bacterium Edwardsiella ictaluri in channel catfish
US7700278B1 (en) 2003-01-08 2010-04-20 University Of South Florida Detection of red tide organisms by nucleic acid amplification
US20050050101A1 (en) * 2003-01-23 2005-03-03 Vockley Joseph G. Identification and use of informative sequences
US20040176584A1 (en) * 2003-02-10 2004-09-09 Veridian Sysytems Division Methods for detecting, enumerating, quantifying, classifying and/or identifying total organismal DNA in a sample
US7595176B2 (en) * 2003-05-30 2009-09-29 Georgia Tech Research Corporation Methods and reagents for quantitative analysis of Dehalococcoides species
US20050042711A1 (en) * 2003-08-11 2005-02-24 George Mason University Field test for fungi
US20060024690A1 (en) * 2003-09-19 2006-02-02 Kao H P Normalization of data using controls
DE10344057B3 (de) * 2003-09-23 2005-06-09 Vermicon Ag Verfahren zum spezifischen Schnellnachweis getränkeschädlicher Mikroorganismen
US7291465B2 (en) * 2004-02-20 2007-11-06 Karaolis David K R Method for direct detection of fungal pathogens
CA2502549C (en) 2004-04-23 2016-02-16 Becton, Dickinson And Company Use of an extraction control in a method of extracting nucleic acids
US8084260B2 (en) * 2004-11-24 2011-12-27 Applied Biosystems, Llc Spectral calibration method and system for multiple instruments
EP2477029A1 (de) 2005-06-02 2012-07-18 Fluidigm Corporation Auswertung mit mikrofluiden Aufteilungsvorrichtungen
JP2009511086A (ja) * 2005-10-17 2009-03-19 ジェン−プローブ・インコーポレーテッド レジオネラ・ニューモフィラ核酸を検出するための組成物及び方法
US8609829B2 (en) * 2005-10-17 2013-12-17 Gen-Probe Incorporated Compositions and methods to detect Legionella pneumophila nucleic acid
US8148511B2 (en) * 2006-09-28 2012-04-03 The University Of North Carolina At Chapel Hill Methods and compositions for the detection and quantification of E. coli and Enterococcus
IE20060925A1 (en) * 2006-12-15 2008-06-25 Nat University Of Ireland Galway Nucleic acids probes for detection of yeast and fungal species
EP2712935B1 (de) 2008-05-28 2016-07-13 Kao Corporation VERFAHREN ZUM NACHWEIS EINES THERMOTOLERANTEN pilzes der Gattung Hamigera
US9803250B2 (en) 2008-11-26 2017-10-31 Fred Hutchinson Cancer Research Center Broad range PCR-based compositions and methods for the detection and identification of fungal pathogens
CN101906465B (zh) * 2009-06-02 2012-11-07 华东理工大学 瓜黑星病菌的检测试剂盒及其检测方法
CN101906466B (zh) * 2009-06-02 2012-11-07 华东理工大学 瓜类主要病原菌的多重pcr检测试剂盒及其检测方法
WO2011098907A2 (en) * 2010-02-15 2011-08-18 Council Of Scientific & Industrial Research Method for detecting fungal pathogens
IT1405994B1 (it) * 2010-06-22 2014-02-06 Euroclone Spa Metodo ad elevata sensibilita' per rilevare un acido nucleico target in un campione
US9145592B2 (en) 2010-11-24 2015-09-29 Alina Cywinska Qualitative/quantitative detection of fungal species
CN104471077B (zh) 2012-05-21 2017-05-24 富鲁达公司 颗粒群的单颗粒分析
JP5956265B2 (ja) * 2012-07-12 2016-07-27 花王株式会社 ケトミウム・グロボーサム・クレードの検出方法
JP6267436B2 (ja) * 2013-04-05 2018-01-24 株式会社Ｌｓｉメディエンス 接合菌症起因菌の検出及び同定法
JP2014217374A (ja) * 2013-04-10 2014-11-20 東洋製罐グループホールディングス株式会社 カビ検出用担体、カビの検出方法、及びカビ検出用キット
JP6652693B2 (ja) 2013-04-29 2020-02-26 キアゲン ゲーエムベーハー ブロッキングオリゴヌクレオチドを用いたｄｎａ増幅の方法
WO2015157696A1 (en) * 2014-04-11 2015-10-15 The Trustees Of The University Of Pennsylvania Compositions and methods for metagenome biomarker detection
US10662484B1 (en) 2016-03-24 2020-05-26 Bench in a Box, LLC Two universal duplex primer sets and a combined real-time PCR and high resolution melt analysis assay for the amplification of gram-positive and gram-negative bacteria
WO2017205957A1 (en) * 2016-06-01 2017-12-07 9087-4405 Quebec Inc. Remote access system and method for plant pathogen management
CN107012233A (zh) * 2017-04-27 2017-08-04 广西大学 一种散囊菌的探针荧光定量pcr快速检测方法
CN108707691A (zh) * 2018-06-07 2018-10-26 杭州缔蓝生物技术有限公司 一种特异性检测烟曲霉的引物探针组合和基于荧光pcr法检测烟曲霉的试剂盒
CN110878374B (zh) * 2019-11-21 2023-10-27 上海市食品药品检验研究院 药品质量控制中常见产毒真菌的特征序列鉴定方法

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US5538848A (en) 1994-11-16 1996-07-23 Applied Biosystems Division, Perkin-Elmer Corp. Method for detecting nucleic acid amplification using self-quenching fluorescence probe
US5585238A (en) * 1994-04-25 1996-12-17 Ciba-Geigy Corporation Detection of fungal pathogens using the polymerase chain reaction
US5919617A (en) * 1994-12-21 1999-07-06 Miami University Methods and reagents for detecting fungal pathogens in a biological sample
US5707802A (en) * 1995-01-13 1998-01-13 Ciba Corning Diagnostics Corp. Nucleic acid probes for the detection and identification of fungi
US6387652B1 (en) * 1998-04-15 2002-05-14 U.S. Environmental Protection Agency Method of identifying and quantifying specific fungi and bacteria

Also Published As

Publication number Publication date
EP1484416A3 (de) 2006-01-11
EP1484416A2 (de) 2004-12-08
EP1349953A2 (de) 2003-10-08
US6387652B1 (en) 2002-05-14
CA2412993A1 (en) 2001-12-20
WO2001096612A2 (en) 2001-12-20
WO2001096612A3 (en) 2003-07-31

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