AU2001255518A1 - Compositions and methods for array-based nucleic acid hybridization - Google Patents
Compositions and methods for array-based nucleic acid hybridizationInfo
- Publication number
- AU2001255518A1 AU2001255518A1 AU2001255518A AU5551801A AU2001255518A1 AU 2001255518 A1 AU2001255518 A1 AU 2001255518A1 AU 2001255518 A AU2001255518 A AU 2001255518A AU 5551801 A AU5551801 A AU 5551801A AU 2001255518 A1 AU2001255518 A1 AU 2001255518A1
- Authority
- AU
- Australia
- Prior art keywords
- compositions
- array
- methods
- nucleic acid
- acid hybridization
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
- C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6816—Hybridisation assays characterised by the detection means
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6832—Enhancement of hybridisation reaction
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00277—Apparatus
- B01J2219/00497—Features relating to the solid phase supports
- B01J2219/00527—Sheets
- B01J2219/00529—DNA chips
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00583—Features relative to the processes being carried out
- B01J2219/00603—Making arrays on substantially continuous surfaces
- B01J2219/00605—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
- B01J2219/00608—DNA chips
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00583—Features relative to the processes being carried out
- B01J2219/00603—Making arrays on substantially continuous surfaces
- B01J2219/00605—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
- B01J2219/00612—Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports the surface being inorganic
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00718—Type of compounds synthesised
- B01J2219/0072—Organic compounds
- B01J2219/00722—Nucleotides
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
- B01L3/00—Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
- B01L3/50—Containers for the purpose of retaining a material to be analysed, e.g. test tubes
- B01L3/508—Containers for the purpose of retaining a material to be analysed, e.g. test tubes rigid containers not provided for above
-
- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B40/00—Libraries per se, e.g. arrays, mixtures
- C40B40/04—Libraries containing only organic compounds
- C40B40/06—Libraries containing nucleotides or polynucleotides, or derivatives thereof
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Biophysics (AREA)
- General Engineering & Computer Science (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Genetics & Genomics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- General Health & Medical Sciences (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Applications Claiming Priority (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US21015300P | 2000-06-07 | 2000-06-07 | |
US60/210,153 | 2000-06-07 | ||
PCT/US2001/012838 WO2001094630A2 (fr) | 2000-06-07 | 2001-04-19 | Compositions et methodes d'hybridation d'acides nucleiques a partir de jeux d'echantillons |
Publications (1)
Publication Number | Publication Date |
---|---|
AU2001255518A1 true AU2001255518A1 (en) | 2001-12-17 |
Family
ID=22781783
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
AU2001255518A Abandoned AU2001255518A1 (en) | 2000-06-07 | 2001-04-19 | Compositions and methods for array-based nucleic acid hybridization |
Country Status (6)
Country | Link |
---|---|
US (3) | US20020006622A1 (fr) |
EP (1) | EP1356088A2 (fr) |
JP (2) | JP2004500867A (fr) |
AU (1) | AU2001255518A1 (fr) |
CA (1) | CA2410879A1 (fr) |
WO (1) | WO2001094630A2 (fr) |
Families Citing this family (75)
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US20050032060A1 (en) * | 2001-08-31 | 2005-02-10 | Shishir Shah | Arrays comprising pre-labeled biological molecules and methods for making and using these arrays |
US6916621B2 (en) * | 2002-03-27 | 2005-07-12 | Spectral Genomics, Inc. | Methods for array-based comparitive binding assays |
AU2003303396A1 (en) * | 2002-12-23 | 2004-07-22 | Agilent Technologies, Inc. | Comparative genomic hybridization assays using immobilized oligonucleotide features and compositions for practicing the same |
US20090124514A1 (en) * | 2003-02-26 | 2009-05-14 | Perlegen Sciences, Inc. | Selection probe amplification |
US20060183132A1 (en) * | 2005-02-14 | 2006-08-17 | Perlegen Sciences, Inc. | Selection probe amplification |
US7211384B2 (en) | 2003-05-28 | 2007-05-01 | Agilent Technologies, Inc. | Comparative genomic hybridization assays using immobilized oligonucleotide targets with initially small sample sizes and compositions for practicing the same |
US20040241668A1 (en) * | 2003-05-30 | 2004-12-02 | Amorese Douglas A. | Ligand array assays that include a low surface tension fluid wash step and compositions for practicing the same |
US20040241742A1 (en) * | 2003-05-30 | 2004-12-02 | Peck Bill J. | Ligand array processing methods that include a low surface tension fluid deposition step and compositions for practicing the same |
US20040241880A1 (en) * | 2003-05-30 | 2004-12-02 | Leproust Eric M. | Ligand array assays having reduced fluorescent dye degradation and compositions for practicing the same |
US20050181394A1 (en) * | 2003-06-20 | 2005-08-18 | Illumina, Inc. | Methods and compositions for whole genome amplification and genotyping |
US20040259100A1 (en) * | 2003-06-20 | 2004-12-23 | Illumina, Inc. | Methods and compositions for whole genome amplification and genotyping |
US7670810B2 (en) * | 2003-06-20 | 2010-03-02 | Illumina, Inc. | Methods and compositions for whole genome amplification and genotyping |
US7165510B2 (en) * | 2003-11-04 | 2007-01-23 | Dennis Lee Hakes | Bovine germicide application device |
US20050136413A1 (en) * | 2003-12-22 | 2005-06-23 | Briggs Michael W. | Reagent systems for biological assays |
ES2614425T3 (es) | 2004-01-08 | 2017-05-31 | Dako Denmark A/S | Aparato y métodos para el procesamiento de muestras biológicas y un depósito para los mismos |
US8321138B2 (en) * | 2005-07-29 | 2012-11-27 | Agilent Technologies, Inc. | Method of characterizing quality of hybridized CGH arrays |
US20070031883A1 (en) * | 2004-03-04 | 2007-02-08 | Kincaid Robert H | Analyzing CGH data to identify aberrations |
US20060080043A1 (en) * | 2004-10-12 | 2006-04-13 | Sampas Nicholas M | Comparative genomic hybridization significance analysis using data smoothing with shaped response functions |
US20070099227A1 (en) * | 2004-10-12 | 2007-05-03 | Curry Bo U | Significance analysis using data smoothing with shaped response functions |
US20060078898A1 (en) * | 2004-10-12 | 2006-04-13 | Curry Bo U | Methods and compositions for reducing label variation in array-based comparative genome hybridization assays II |
US20060078899A1 (en) * | 2004-10-12 | 2006-04-13 | Scheffer Alicia F | Methods and compositions for reducing label variation in array-based comparative genome hybridization assays |
US20060110744A1 (en) | 2004-11-23 | 2006-05-25 | Sampas Nicolas M | Probe design methods and microarrays for comparative genomic hybridization and location analysis |
WO2006064199A1 (fr) * | 2004-12-13 | 2006-06-22 | Solexa Limited | Procede ameliore de detection de nucleotides |
GB0427236D0 (en) * | 2004-12-13 | 2005-01-12 | Solexa Ltd | Improved method of nucleotide detection |
US20060127918A1 (en) * | 2004-12-14 | 2006-06-15 | Quest Diagnostics Investments Incorporated | Nucleic acid arrays |
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US20070003938A1 (en) * | 2005-06-30 | 2007-01-04 | Perlegen Sciences, Inc. | Hybridization of genomic nucleic acid without complexity reduction |
US11111544B2 (en) | 2005-07-29 | 2021-09-07 | Natera, Inc. | System and method for cleaning noisy genetic data and determining chromosome copy number |
US9424392B2 (en) | 2005-11-26 | 2016-08-23 | Natera, Inc. | System and method for cleaning noisy genetic data from target individuals using genetic data from genetically related individuals |
US10083273B2 (en) | 2005-07-29 | 2018-09-25 | Natera, Inc. | System and method for cleaning noisy genetic data and determining chromosome copy number |
US11111543B2 (en) | 2005-07-29 | 2021-09-07 | Natera, Inc. | System and method for cleaning noisy genetic data and determining chromosome copy number |
US10081839B2 (en) | 2005-07-29 | 2018-09-25 | Natera, Inc | System and method for cleaning noisy genetic data and determining chromosome copy number |
US20070048743A1 (en) * | 2005-08-26 | 2007-03-01 | Sampas Nicholas M | Methods and compositions for assessing candidate aCGH probe nucleic acids |
US20070087355A1 (en) * | 2005-10-14 | 2007-04-19 | Barrett Michael T | Comparative genomic hybridization assays and compositions for practicing the same |
CN101583580B (zh) * | 2006-06-29 | 2012-10-31 | 高晓莲 | 不同表面密度的分子的制备和应用 |
WO2008028044A2 (fr) | 2006-08-30 | 2008-03-06 | Centocor, Inc. | Marqueurs et procédés pour évaluer et traiter la recto-colite hémorragique et des troubles associés utilisant un panel de 66 gènes |
US20080090236A1 (en) * | 2006-10-13 | 2008-04-17 | Yakhini Zohar H | Methods and systems for identifying tumor progression in comparative genomic hybridization data |
US20080102453A1 (en) * | 2006-10-31 | 2008-05-01 | Jayati Ghosh | Methods and systems and analysis of CGH data |
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CN109971852A (zh) | 2014-04-21 | 2019-07-05 | 纳特拉公司 | 检测染色体片段中的突变和倍性 |
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US11479812B2 (en) | 2015-05-11 | 2022-10-25 | Natera, Inc. | Methods and compositions for determining ploidy |
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CA1253129A (fr) * | 1984-02-09 | 1989-04-25 | Thomas R. Jones | Materiaux mineraux poreux |
US4957858A (en) * | 1986-04-16 | 1990-09-18 | The Salk Instute For Biological Studies | Replicative RNA reporter systems |
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DE3880273T2 (de) * | 1987-11-27 | 1993-07-29 | Ecc Int Ltd | Poroese anorganische materialien. |
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-
2001
- 2001-04-19 JP JP2002502170A patent/JP2004500867A/ja active Pending
- 2001-04-19 WO PCT/US2001/012838 patent/WO2001094630A2/fr active Application Filing
- 2001-04-19 EP EP01928687A patent/EP1356088A2/fr not_active Withdrawn
- 2001-04-19 CA CA002410879A patent/CA2410879A1/fr not_active Abandoned
- 2001-04-19 US US09/839,658 patent/US20020006622A1/en not_active Abandoned
- 2001-04-19 AU AU2001255518A patent/AU2001255518A1/en not_active Abandoned
-
2002
- 2002-07-26 US US10/207,440 patent/US20030003496A1/en not_active Abandoned
-
2006
- 2006-11-30 JP JP2006324314A patent/JP2007050010A/ja active Pending
-
2008
- 2008-09-15 US US12/210,335 patent/US20090069195A1/en not_active Abandoned
Also Published As
Publication number | Publication date |
---|---|
CA2410879A1 (fr) | 2001-12-13 |
EP1356088A2 (fr) | 2003-10-29 |
JP2004500867A (ja) | 2004-01-15 |
JP2007050010A (ja) | 2007-03-01 |
US20090069195A1 (en) | 2009-03-12 |
WO2001094630A2 (fr) | 2001-12-13 |
US20030003496A1 (en) | 2003-01-02 |
US20020006622A1 (en) | 2002-01-17 |
WO2001094630A3 (fr) | 2003-08-21 |
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