WO2022143870A1 - 一种特异性结合bcma的抗体及其应用 - Google Patents
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- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
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- C07K2317/565—Complementarity determining region [CDR]
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- C07K2317/60—Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments
- C07K2317/62—Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments comprising only variable region components
- C07K2317/622—Single chain antibody (scFv)
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- C07K—PEPTIDES
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- C07K2319/01—Fusion polypeptide containing a localisation/targetting motif
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- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
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- C07K2319/01—Fusion polypeptide containing a localisation/targetting motif
- C07K2319/03—Fusion polypeptide containing a localisation/targetting motif containing a transmembrane segment
Definitions
- the present invention relates to an antibody that specifically binds to BCMA and a chimeric antigen receptor constructed based on the antibody, and discloses the amino acid sequence of the antibody, a cloning or expression vector, a host cell, a method for producing the antibody, and the antibody or chimeric antigen Use of receptors.
- MM Multiple myeloma
- MM is a malignant tumor characterized by massive proliferation of clonal plasma cells.
- treatment options for multiple myeloma have advanced significantly in recent years, multiple myeloma remains a disease with high morbidity and mortality. Therefore, new therapeutic methods are urgently needed for the treatment of multiple myeloma.
- Chimeric Antigen Receptor-T cell Chimeric Antigen Receptor-T cell
- CAR-T Chimeric Antigen Receptor-T cell
- scFv Single-chain antibody variable fragment
- the scFv of CAR-T cells are generally derived from monoclonal antibodies, which can bypass the major histocompatibility complex (MHC) restriction to recognize intact cell surface proteins.
- MHC major histocompatibility complex
- BCMA B Cell Maturation Antigen
- BCMA is mainly expressed by plasma cells and some mature B cells, but not expressed in most B cells and other tissues (B-cell Maturation Antigen Is a Promising Target for Adoptive T-cell Therapy of Multiple Myeloma, clinical cancer research,15 Apr 2013.). Therefore, BCMA can be used as a target antigen for CAR-T cell therapy in MM.
- CAR-T cell therapy has achieved good therapeutic effects in the treatment of multiple myeloma.
- most of the CAR-T cells currently used in clinical trials are mouse-derived single-chain antibody scFv.
- CD19 chimeric antigen receptors with humanized scFv trigger leukemia cell killing, Cellular Immunology, 14 Mar 2016.; Chimeric Antigen Receptor T-cell Therapies for Multiple Myeloma, blood, 14 Dec 2017.).
- scFv single-chain variable fragment
- the affinity of scFv to target antigen is also an important factor to determine whether CAR-T can effectively kill target cells. Therefore, screening out scFvs that can specifically and effectively recognize BCMA is crucial for the construction of a safe and effective CAR-T for the treatment of MM.
- the present invention discloses an isolated antibody that specifically binds to BCMA, comprising: a heavy chain variable domain (hereinafter abbreviated as VH) and a light chain variable domain (hereinafter abbreviated as VL), wherein
- the VH includes: VH-CDR1 comprising the amino acid sequence of SEQ ID NO: 1 (GYTFX 1 X 2 YSMN), VH-CDR2 comprising the amino acid sequence of SEQ ID NO: 2 (RINTX 3 SG X 4 P X 5 YADDFKG) and VH-CDR3 comprising the amino acid sequence of SEQ ID NO: 3 (SNDY X 6 YSLD X 7 ); wherein X 1 is selected from S, T, R; X 2 is selected from R, S, H; X 3 is selected from G, E , R; X 4 is selected from A, T, V; X 5 is selected from I, N; X 6 is selected from N, L; X 7 is selected from H, Y, F;
- the VL includes: VL-CDR1 comprising the amino acid sequence of SEQ ID NO: 4 (RAS X 8 SV X 9 X 10 X 11 G X 12 X 13 X 14 X 15 Y), VL-CDR1 comprising the amino acid sequence of SEQ ID NO: 5 (LASNVQT) VL-CDR2 of amino acid sequence and VL-CDR3 comprising the amino acid sequence of SEQ ID NO: 6 (X 16 QSR X 17 IPRT); wherein X 8 is selected from R, E; X 9 is selected from T, S; X 10 is selected from I, V; X 11 is selected from A, L; X 12 is selected from S, N; X 13 is selected from P, H; X 14 is selected from I, L; X 15 is selected from I, V; X 16 is selected from L, F; X 17 is selected from T, S.
- VL-CDR1 comprising the amino acid sequence of SEQ ID NO: 4
- VL-CDR1
- the VH of the antibody comprises: VH-CDR1 as set forth in the amino acid sequence of SEQ ID NO:1, VH-CDR2 as set forth in the amino acid sequence of SEQ ID NO:2, and VH-CDR2 as set forth in the amino acid sequence of SEQ ID NO:2 : amino acid sequence VH-CDR3 shown in 3;
- the VL of the antibody includes: VL-CDR1 as shown in the amino acid sequence of SEQ ID NO:4, VL-CDR2 as shown in the amino acid sequence of SEQ ID NO:5 and as shown in the amino acid sequence of SEQ ID NO:6 VL-CDR3.
- the present invention discloses an isolated antibody that specifically binds to BCMA, comprising VH and VL, said VH comprising VH-CDR1, VH-CDR2 and VH-CDR3, said VL comprising VL-CDR1, VL-CDR2 and VL -CDR3; wherein the VH-CDR1 comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 7, 8 and 9; the VH-CDR2 comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 10, 11, 12 and 13
- the VH-CDR3 comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 14, 15 and 16; the VL-CDR1 comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 17, 18 and 19
- the VL-CDR2 comprises the amino acid sequence of SEQ ID NO:20; the VL-CDR3 comprises the amino acid sequence of SEQ ID NO:21 or SEQ ID NO:22.
- the VH-CDR1 is selected from the amino acid sequence of the group consisting of SEQ ID NOs: 7, 8 and 9; the VH-CDR2 is selected from the group consisting of SEQ ID NOs: 10, 11, 12 and 13 the amino acid sequence of the group consisting of; the VH-CDR3 is selected from the amino acid sequence of the group consisting of SEQ ID NO: 14, 15 and 16; the VL-CDR1 is selected from the group consisting of SEQ ID NO: 17, 18 and 19
- the VL-CDR2 comprises the amino acid sequence of SEQ ID NO:20; the VL-CDR3 comprises the amino acid sequence of SEQ ID NO:21 or SEQ ID NO:22.
- the antibody :
- VH comprising a VH-CDR1 as shown in SEQ ID NO:7, a VH-CDR2 as shown in SEQ ID NO:10, and a VH-CDR3 as shown in SEQ ID NO:14; and a VH comprising a VH-CDR3 as shown in SEQ ID NO:14 VL-CDR1 shown in: 17, VL-CDR2 shown in SEQ ID NO:20 and VL of VL-CDR3 shown in SEQ ID NO:21;
- VH-CDR1 shown in SEQ ID NO:8 VH-CDR2 shown in SEQ ID NO:11 and VH-CDR3 shown in SEQ ID NO:15
- VH comprising SEQ ID NO:15 VL-CDR1 shown in: 18, VL-CDR2 shown in SEQ ID NO:20 and VL of VL-CDR3 shown in SEQ ID NO:21;
- VH-CDR1 as shown in SEQ ID NO:8, VH-CDR2 as shown in SEQ ID NO:12 and VH-CDR3 as shown in SEQ ID NO:14; and a VH comprising as SEQ ID NO:14 VL-CDR1 shown in: 17, VL-CDR2 shown in SEQ ID NO:20 and VL of VL-CDR3 shown in SEQ ID NO:21;
- VH comprising the VH-CDR1 shown in SEQ ID NO:7, the VH-CDR2 shown in SEQ ID NO:10, and the VH-CDR3 shown in SEQ ID NO:14; and a VH comprising a VH-CDR3 shown in SEQ ID NO:14 VL-CDR1 shown in: 17, VL-CDR2 shown in SEQ ID NO:20 and VL of VL-CDR3 shown in SEQ ID NO:22;
- VH comprising the VH-CDR1 shown in SEQ ID NO:9, the VH-CDR2 shown in SEQ ID NO:13, and the VH-CDR3 shown in SEQ ID NO:16; and a VH comprising a VH-CDR3 shown in SEQ ID NO:16 VL-CDR1 shown in SEQ ID NO:19, VL-CDR2 shown in SEQ ID NO:20 and VL of VL-CDR3 shown in SEQ ID NO:21.
- the VH in the above-described antibody comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 23, 24, 25, 26, 27, 28, 29, 30, 31 and 32, or comprises An amino acid sequence having at least 85%, preferably at least 90%, more preferably at least 95%, further preferably at least 99% identity thereto.
- the VL in the above-described antibody comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 33, 35, 36, 37, 38, 39, 40, 41, 42, and 43, or comprises An amino acid sequence having at least 85%, preferably at least 90%, more preferably at least 95%, further preferably at least 99% identity thereto.
- the antibody :
- the antibody described above comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55 and 56, or an amino acid sequence that is at least 85%, preferably at least 90%, more preferably at least 95%, further preferably at least 99% identical to it; or
- the antibody consists of or consists essentially of the above sequence.
- the antibody of the present invention is a single-chain antibody scFv; its VH and VL are linked by a linker peptide chain rich in glycine and serine, and the sequences of VH and VL are interchangeable.
- the antibodies of the invention are chimeric or humanized antibodies.
- the present invention further discloses a chimeric antigen receptor targeting BCMA, which comprises: 1) the scFv of the present invention; 2) a hinge region; 3) a transmembrane region; 4) a costimulatory domain 5) CD3 ⁇ intracellular signal transduction domain.
- the costimulatory domain is selected from CD27, CD28, 4-1BB, OX-40, CD30, CD40, PD-1, ICOS, LFA-1, CD-2, CD7, LIGHT, NKG2C, B7-H3 or its any combination; preferably, the costimulatory domain is selected from 4-1BB, and the 4-1BB comprises the amino acid sequence as described in SEQ ID NO.57; the CD3 ⁇ intracellular signal transduction domain comprises as SEQ ID NO. The amino acid sequence described in NO.58.
- the hinge region and and the transmembrane domain are selected from IgGl, IgG4, CD8 ⁇ , CD28, IL-2 receptor, IL-7 receptor, IL-11 receptor, PD-1 or CD34 hinge and transmembrane domains.
- the present invention discloses an isolated nucleic acid molecule encoding an antibody or chimeric antigen receptor as described above.
- the present invention also discloses a cloning or expression vector, which contains the aforementioned nucleic acid molecule.
- the vector is selected from one or more of DNA, RNA, plasmid, lentiviral vector, adenoviral vector and retroviral vector.
- the present invention also discloses a host cell, comprising the aforementioned nucleic acid molecule or the aforementioned vector.
- the host cells are T lymphocytes, B lymphocytes, natural killer cells, dendritic cells, macrophages, cytotoxic T cells, tumor-infiltrating T cells or regulatory T cells.
- the present invention also discloses a composition or kit comprising the aforementioned antibody, the aforementioned chimeric antigen receptor, the aforementioned nucleic acid molecule, the aforementioned carrier, the aforementioned At least one of the host cells, and a pharmaceutically acceptable excipient, diluent or carrier.
- the present invention also discloses the aforementioned antibody, the aforementioned chimeric antigen receptor, the aforementioned nucleic acid molecule, the aforementioned vector, the aforementioned host cell, or the aforementioned Use of the composition in the preparation of a medicament for preventing or treating B cell-related tumor diseases, autoimmune diseases, and infectious diseases caused by viruses or bacteria.
- the present invention discloses a method of treating a disease, wherein an effective amount of the aforementioned antibody, the aforementioned chimeric antigen receptor, the aforementioned nucleic acid molecule, such as The aforementioned vector, the aforementioned host cell, or the aforementioned composition, wherein the subject suffers from a B cell-related tumor disease, an autoimmune disease, an infectious disease caused by a virus or bacteria at least one of.
- the B cell associated neoplastic disease is selected from the group consisting of acute leukemias such as acute lymphoblastic leukemia, acute myeloid leukemia, acute myeloid leukemia and myeloblastoid, promyelocytic, myelomonocytic type , monocytic and erythroleukemia; chronic leukemias such as chronic myeloid (myeloid) leukemia, chronic myelogenous leukemia and chronic lymphocytic leukemia; polycythemia vera, lymphoma, mantle cell lymphoma, diffuse large B-cell Lymphoma, Hodgkin's disease, non-Hodgkin's lymphoma, multiple myeloma, Waldenstrom's macroglobulinemia, heavy chain disease, myelodysplastic syndrome, hairy cell leukemia, and myeloid development at least one of the bad.
- acute leukemias such as acute lymphoblastic leukemia, acute myeloid
- Figure 1 shows a schematic diagram of a CAR molecule.
- Figure 2 shows a schematic diagram of a plasmid vector.
- the plasmid used for the preparation of lentivirus is pLenti plasmid
- the upstream promoter of the target gene is EF-1 ⁇
- the downstream of the promoter is the signal peptide, Linker region and CAR structural sequence.
- Figure 3 shows the transduction efficiency of lentiviruses with CARs with scFvs specifically recognizing BCMA in T cells.
- Figure 4 shows flow cytometry plots of BCMA expression on the surface of NCI H929 cells and K562 cells.
- Figure 5 shows the killing effect of CAR-T containing scFv-01 (01-CAR-T) on target cells, where 01-CAR-T represents CAR-T cells containing scFv-01, and C-CAR-T is Positive control, T cell treatment group was negative control.
- Figure 6 shows a graph showing the killing effect of CAR-T containing scFv-04 (04-CAR-T) on target cells.
- Figure 7 shows the killing effect of CAR-T containing scFv-05 (05-CAR-T) on target cells.
- Figure 8 shows a graph of the killing effect of CAR-T containing scFv-06 (06-CAR-T) on target cells.
- Figure 9 shows a graph of the killing effect of CAR-T containing scFv-07 (07-CAR-T) on target cells.
- Figure 10 shows a graph of the killing effect of CAR-T containing scFv-08 (08-CAR-T) on target cells.
- Figure 11 shows a graph of the killing effect of CAR-T containing scFv-09 (09-CAR-T) on target cells.
- Figure 12 shows a graph showing the killing effect of scFv-10-containing CAR-T (10-CAR-T) on target cells.
- Figure 13 shows a graph showing the killing effect of CAR-T containing scFv-11 (11-CAR-T) on target cells.
- Figure 14 shows a graph of the killing effect of CAR-T containing scFv-12 (12-CAR-T) on target cells.
- Figure 15 shows a graph of the killing effect of CAR-T containing scFv-13 (13-CAR-T) on target cells.
- Figure 16 shows a graph of the killing effect of CAR-T containing scFv-14 (14-CAR-T) on target cells.
- Figure 17 shows a graph of the killing effect of CAR-T containing scFv-15 (15-CAR-T) on target cells.
- Figure 18 shows a normalized graph of the killing effect of CAR-T in the present invention on target cells.
- Figure 19 shows a graph of cytokine expression of scFv-01-containing CAR-T (01-CAR-T) upon target cell stimulation.
- antigen refers to a molecule that elicits an immune response, which may involve antibody production, or activation of specific immunocompetent cells.
- any macromolecule including all proteins or peptides, can be used as an antigen.
- Antigens can be derived from recombinant or genomic DNA.
- DNA that includes a nucleotide sequence or part of a nucleotide sequence encoding a protein that elicits an immune response, encoding the term "antigen" as used herein.
- the antigen need not be encoded solely by the full-length nucleotide sequence of the gene.
- the present disclosure includes, but is not limited to, the use of partial nucleotide sequences of more than one gene, and that these nucleotide sequences are arranged in different combinations to elicit a desired immune response.
- the antigen need not be encoded by a "gene” at all, the antigen may be generated, synthesized or derived from a biological sample.
- biological samples may include, but are not limited to, tissue samples, tumor samples, cells, or biological fluids.
- antibody refers to an immunoglobulin molecule that specifically binds to an antigen.
- Antibodies can be intact immunoglobulins derived from natural sources or from recombinant sources, and can be immunoreactive portions of intact immunoglobulins. Antibodies are usually tetramers of immunoglobulin molecules.
- Antibodies of the present invention may exist in various forms, including polyclonal, monoclonal, monospecific, multispecific, nonspecific, humanized, single chain, chimeric, synthetic, recombinant , hybrid, mutated, and grafted antibodies; antibody formats in the present invention also include full-length antibodies, antibody fragments, such as Fab, Fab', F(ab')2, Fv, scFv, di-scFv, tri-scFv, Fd and other antibody fragments that retain antigen binding function; also can be dimeric structure Diabody or trimeric structure Triabody.
- the fragment should include an antigen-binding fragment, which typically includes both VL and VH, however, it does not necessarily have to include both.
- Fd antibody fragments consist only of the VH and CH1 domains, but still retain some of the antigen-binding functions of the intact antibody.
- antibody as an immunoglobulin or fragment or derivative thereof includes any polypeptide comprising an antigen binding site, whether produced in vitro or in vivo.
- the VH or VL regions can be further subdivided into hypervariable regions called complementarity determining regions (CDRs), and interspersed more conserved regions called framework regions (FWRs).
- CDRs complementarity determining regions
- FWRs framework regions
- the variable regions of the heavy and light chains contain binding domains that interact with the antigen.
- VH-CDRs CDRs in heavy chains
- VL-CDRs CDRs in light chains
- the CDRs of the disclosed antibodies and antigen-binding fragments are defined or identified by Kabat numbering.
- single-chain variable region fragment refers to an antibody formed by recombinant DNA techniques in which the immunoglobulin heavy and light chain variable regions are formed by amino acid peptides Segments (linkers) are connected.
- Various methods of generating single chain antibodies are known, including in U.S. Patent No. 4,694,778; Bird (1988) Science 242:423-442; Huston et al. (1988) Proc. Natl. Acad. Sci. USA 85:5879-5883 ; those described in Ward et al. (1989) Nature 334:54454; Skerra et al. (1988) Science 242:1038-1041.
- variable regions of the heavy and light chains contain binding domains that interact with the antigen.
- CDRs in heavy chains are abbreviated as VH-CDRs, eg, VH-CDR1, VH-CDR2, VH-CDR3, and CDRs in light chains are abbreviated as VL-CDRs, eg, VL-CDR1, VL-CDR2, VL-CDR3.
- the CDRs of the antibodies and antigen-binding fragments disclosed herein are defined or identified by Kabat numbering.
- chimeric refers to an antibody or antibody polypeptide in which a portion of the heavy chain is derived from one species and the other portion of the heavy chain is derived from another species.
- a chimeric antibody may comprise constant regions derived from humans and variable regions derived from non-human animals such as camelids.
- the non-human animal is a mammal, such as a camelid, mouse, rat, rabbit, goat, sheep, guinea pig, or hamster.
- humanized refers to an antibody or antibody polypeptide comprising CDRs derived from non-human animals, FWR regions derived from humans, and, where applicable, constant regions derived from humans.
- BCMA can be derived from a human, and an exemplary sequence of human BCMA includes the human BCMA protein (Genbank accession No.: BAB60895.1).
- BCMA as used herein is intended to encompass any form of BCMA, eg, 1) native unprocessed BCMA molecules, "full length” BCMA chains or naturally occurring BCMA variants, including, eg, splice variants or the like allelic variants; 2) any form of BCMA produced after intracellular processing; or 3) full-length, fragments (eg, truncated forms, extracellular/transmembrane domains) of BCMA subunits produced by recombinant methods, or Modified forms thereof (eg mutant forms, glycosylation/pegylation, His-tag/immunofluorescence fusion forms).
- targeting BCMA refers to a chimeric antigen receptor capable of specifically binding to BCMA (eg, human BCMA), for example, a BCMA-targeting chimeric antigen receptor refers to a chimeric antigen receptor capable of specifically binding BCMA; for example, targeting BCMA An scFv refers to a single-chain antibody that can specifically bind to BCMA (eg, human BCMA).
- the term “specifically binds” or “specifically binds” refers to a non-random binding reaction between two molecules, eg, a binding reaction between an antibody and an antigen.
- the antibody polypeptides provided by the present disclosure specifically bind human BCMA with binding affinity (K D ) ⁇ 10 -6 M (eg, ⁇ 5x10 -7 M, ⁇ 2x10 -7 M, ⁇ 10 -7 M, ⁇ 5x10 -8 M, ⁇ 2x10 -8 M, ⁇ 10 -8 M, ⁇ 5x10 -9 M, ⁇ 4x10 -9 M, ⁇ 3x10 -9 M, ⁇ 2x10 -9 M or ⁇ 10 -9 M) .
- K D refers to the ratio of dissociation rate to association rate (K off /K on ), which can be determined using any conventional method known in the art, including but not limited to surface plasmon resonance methods, microscale thermal Electrophoresis, high performance liquid chromatography-mass spectrometry and flow cytometry (eg FACS). In certain embodiments, KD values can be appropriately determined using a flow cytometer.
- vector refers to a molecular vehicle for the transport, transduction and expression in a target cell of a contained exogenous gene of interest (eg, a polynucleotide according to the present invention) that provides a suitable The nucleotide sequence that initiates transcription, the promoter.
- Vectors include isolated nucleic acids, and which can be used to deliver isolated nucleic acids to the interior of cells. Numerous vectors are known in the art, including, but not limited to, linear polynucleotides, polynucleotides associated with ionic or amphiphilic compounds, plasmids, and viruses. Thus, the term “vector” includes autonomously replicating plasmids or viruses.
- viral vectors include, but are not limited to, Sendai virus vectors, adenovirus vectors, adeno-associated virus vectors, retroviral vectors, lentiviral vectors, and the like.
- an "expression vector” refers to a vector that includes a recombinant polynucleotide that includes expression control sequences operably linked to the nucleotide sequence to be expressed.
- the expression vector includes sufficient cis-acting elements for expression; other elements for expression can be supplied by the host cell or in an in vitro expression system.
- Expression vectors include all those known in the art that incorporate recombinant polynucleotides, such as plasmids (eg, naked or contained in liposomes) and viruses (eg, Sendai virus, lentivirus, retrovirus, adenovirus, and adeno-associated virus).
- a "cloning vector” refers to a DNA molecule such as a plasmid, cosmid, or phage that is capable of autonomous replication in a host cell.
- Cloning vectors typically contain one or a small number of restriction endonuclease recognition sites and marker genes where foreign DNA sequences are inserted in a defined manner without losing the essential biology of the vector function, the marker gene is suitable for the identification and selection of cells transformed with the cloning vector.
- Marker genes typically include genes that provide tetracycline resistance or ampicillin resistance.
- the host cell can be any prokaryotic or eukaryotic cell that contains a cloning vector or expression vector, including those prokaryotic or eukaryotic cells that have been genetically engineered to contain the cloned gene in the chromosome or genome of the host cell.
- Suitable mammalian host cells include myeloma cells, such as SP2/0 cells and NSO cells, as well as Chinese hamster ovary (CHO) cells, hybridoma cell lines, and other mammalian host cells that can be used to express antibodies. Special transgenic animals with modified immune systems can also be used to make antibodies.
- identity refers to the sequence identity between two nucleic acid molecules or polypeptides. Identity can be determined by comparing the positions in each sequence aligned for comparison purposes. When a position in the compared sequences is occupied by the same base, then the molecules are identical at that position. The degree of similarity or identity between nucleic acid or amino acid sequences is a function of the number of identical or matching nucleotides at positions shared by the nucleic acid sequences. The identity between two sequences can be calculated using various alignment algorithms and/or programs, including those available as part of the GCG sequence analysis package (University of Wisconsin, Madison, Wis.), and can be used, for example, with default settings FASTA or BLAST.
- polypeptides that are at least 70%, 85%, 90%, 95%, 98%, or 99% identical to a particular polypeptide described herein and preferably exhibit substantially the same function, and polynucleotides encoding the above-mentioned polypeptides.
- isolated means altered or removed from the natural state.
- a nucleic acid or peptide that occurs naturally in a living animal is not “isolated”, but the same nucleic acid or peptide that is partially or completely separated from coexisting materials in its natural state is “isolated.”
- An isolated nucleic acid or protein can exist in a substantially purified form, or can exist in a non-natural environment, such as a host cell.
- nucleotide sequences "encoding" a nucleic acid molecule of a protein or an amino acid sequence of a protein as used herein include degeneracy of each other and all nucleotide sequences encoding the same amino acid sequence.
- the nucleotide sequence may also include one or more introns.
- variant means a variant of a polypeptide obtained by substituting at least one residue in the amino acid sequence of the parent molecule or by adding at least one amino acid residue to the N- or C-terminus.
- the term “subject” includes any human or non-human animal.
- the term “non-human animal” includes all vertebrates such as mammals and non-mammals such as non-human primates, sheep, dogs, cats, horses, cows, chickens, rats, mice, amphibians, reptiles Wait. Unless otherwise indicated, the terms “patient” or “subject” are used interchangeably. In the present invention, the preferred subject is a human.
- beneficial or desired clinical outcomes include, but are not limited to, reduction in one or more symptoms, reduction in disease severity, stabilization (ie, no worsening) of disease state, delay or reduction in disease progression. Slowness, improvement or remission of disease state, and remission (whether partial or complete remission), whether detectable or undetectable.
- Treatment may refer to prolonging survival compared to expected survival if not receiving treatment.
- treatment includes prophylaxis.
- the treatment is “effective” if the progression of the disease is reduced or stopped.
- Treatment can also mean prolonging survival as compared to expected survival if not receiving treatment.
- Patients in need of treatment include those who have been diagnosed with disorders associated with the expression of polynucleotide sequences, and those who may develop such disorders due to genetic predisposition or other factors.
- autoimmune disease as used herein is defined as a disorder resulting from an autoimmune response. Autoimmune diseases are the result of inappropriate and excessive responses to self-antigens. Examples of autoimmune diseases include, but are not limited to, Addison's disease, alopecia areata, ankylosing spondylitis, autoimmune hepatitis, autoimmune mumps, Crohn's disease, diabetes (type 1), dystrophic epidermia bullosa lysis, epididymitis, glomerulonephritis, Graves' disease, Guillain-Barré syndrome, Hashimoto's disease, hemolytic anemia, systemic lupus erythematosus, multiple sclerosis, myasthenia gravis, Pemphigus vulgaris, psoriasis, rheumatic fever, rheumatoid arthritis, sarcoidosis, scleroderma, Sjogren's syndrome, spondyloarthropathy,
- the nucleic acid encoding the scFv shown in Table 2 can be synthesized by the method of genetic engineering.
- the nucleic acid fragment encoding scFv of the present invention was synthesized in Beijing Biomed Gene Technology Co., Ltd.
- the scFv fragment contains VH, VL and a linker region.
- the linker region links the two domains together between VH and VL to form an antigen-binding site that specifically recognizes BCMA.
- a single chain antibody is generally an amino acid chain sequence encoded by a nucleotide chain, and the scFv can be further modified by amino acid deletions, insertions, substitutions, additions, and other modifications known in the art.
- the single-chain antibody scFv in Example 1 forms a CAR structure together with the hinge region, the transmembrane domain, the CD28 or 4-1BB costimulatory domain, and the CD3 ⁇ domain. wherein the hinge region and the transmembrane region are selected from CD8 ⁇ .
- the scFv gene targeting BCMA was synthesized by the method of gene synthesis (Beijing Biomed Gene Technology Co., Ltd.). 2) Using the existing CAR plasmid as a template, PCR was used to clone out the CD8 ⁇ hinge region, CD8 ⁇ transmembrane region, the intracellular region of 4-1BB (corresponding to NP_001552.2), and CD3 ⁇ (corresponding to NP_000725.2) in the CAR molecule. 1) Nucleic acid fragments in the intracellular region. 3) Using the gene obtained in step 1) and the nucleic acid fragment obtained in step 2) as a template, a complete nucleic acid fragment targeting BCMA CAR is cloned by PCR.
- step 4) Insert the complete nucleic acid fragment obtained in step 3) into the lentiviral vector pLenti6.3/V5 (Thermo Fisher, Waltham, MA, USA) by the method of restriction enzyme cleavage and ligation, and obtain the lentiviral vector carrying the targeting BCMCAR gene.
- Viral transfer plasmid ( Figure 2).
- the lentiviral packaging plasmids pLP/VSVG, pLP1/MDK, pLP2/RSK (Thermo Fisher, Waltham, MA, USA) and the transfer plasmid obtained in step 4) were mixed with Lipofectamine 3000 (Thermo Fisher, Waltham, MA, USA) After transfection into HEK293T cells, the culture medium was collected after 48 hours, centrifuged at 300 g to remove cell debris, and centrifuged at 25,000 rpm for 3 hours with an ultracentrifuge. Dissolve the pellet with 1 mL of normal saline, which is the desired lentiviral vector.
- T cells were isolated from peripheral blood mononuclear cells (Miaotong (Shanghai) Biotechnology Co., Ltd., China) of healthy volunteers using CD3/CD28 Dynabeads (Thermo Fisher).
- the isolated and purified T cells (the T cells at this time were linked to CD3/CD28Dynabeads) were seeded and cultured in X-VIVO 15 medium (Lonza, Switzerland) at 1.0 ⁇ 10 6 cells/mL, and IL- 2 (Shandong Jintai Bioengineering Co., Ltd., China) (500IU/mL) After culturing for 48 hours, T cells were infected with the above lentiviral vector.
- the cells were centrifuged to change the medium, and fresh X-VIVO 15 containing IL-2 (500 IU/mL) was added to continue the culture. After 8 days of cell culture, all cells in the culture system were collected, and the Dynabeads in the culture system were removed with a magnetic stand, and the T cells were centrifuged and counted.
- This example takes the detection of the expression of BCMA on the surface of the human myeloma cell line NCI H929 and the human leukemia cell line K562 as an example.
- NCI H929 and K562 cells were purchased from ATCC. NCI H929 cells and K562 cells were cultured to the vigorous proliferation stage, 1.0 ⁇ 10 6 cells were taken from each, the cells were resuspended in 200 ⁇ L of DPBS, and the supernatant was removed after centrifugation at 1000 g. The cell pellet was resuspended in 100 ⁇ L DPBS, 5 ⁇ L fluorescently labeled BCMA antibody (Miltenyi Biotec, USA) was added, incubated at room temperature for 20 minutes, the cells were resuspended in 200 ⁇ L DPBS, and the supernatant was removed after centrifugation at 1000 g.
- BCMA antibody Miltenyi Biotec, USA
- the cells were resuspended in 100 ⁇ L of DPBS, and the ratio of BCMA expression in the two cells was detected by flow cytometer (NovoCyte 2060R, ACEA Biosciences, San Diego, CA, USA). As shown in Figure 4, the expression level of BCMA on the surface of NCI H929 cells was high, while K562 cells hardly expressed BCMA.
- the killing efficiency of CAR-T containing scFv, CD8 ⁇ hinge region, CD8 ⁇ transmembrane domain, 4-1BB costimulatory domain and CD3 ⁇ domain that specifically recognizes BCMA is detected on BCMA-positive target cells as an example.
- NCI H929 target cells ATCC
- BCMA negative K562 cells Resuspend 2 ⁇ 10 6 NCI H929 target cells (ATCC) or BCMA negative K562 cells in 1 mL of normal saline, add 5 ⁇ L Calcein-AM (concentration 1 ⁇ g/ ⁇ L, ThermoFisher, USA), mix gently, and then put in 37 Incubate in a water bath for 5 min to label target cells, wash twice with 10 mL of normal saline to remove excess dye, and resuspend cells in 1 mL of normal saline for counting.
- Calcein-AM Concentration 1 ⁇ g/ ⁇ L, ThermoFisher, USA
- the fluorescence value of the cell supernatant was detected with a fluorescence microplate reader (Varioscan Lux, ThermoFisher) (excitation wavelength: 495 nm, emission wavelength: 515 nm).
- FIGS 5 to 17 show that CAR-Ts with BCMA-targeting scFv, co-stimulatory signaling domains and CD3 ⁇ signaling domains can effectively kill NCI H929 cells by recognizing BCMA target proteins, and are more effective than Bluebird Bio's BCMA-targeting CAR-Ts.
- CAR-T (C-CAR-T, sequence reference Seq No.15 in patent WO2016/014789A2) has higher killing efficiency on NCI H929 cells, but cannot effectively kill BCMA negative K562 cells, indicating that these CAR-Ts can effectively kill NCI H929 cells.
- BCMA is specifically recognized by scFv, and CAR-T is activated, causing CAR-T to kill tumor cells.
- Figure 18 shows that compared with C-CAR-T, most CAR-T cells (except 05-CAR-T) have higher killing efficiency on NCI H929 cells, indicating that these CAR-T cells have stronger effect on tumor cells reactivity.
- CAR-T containing scFv-01, CD8 ⁇ hinge region, CD8 ⁇ transmembrane domain, 4-1BB costimulatory domain and CD3 ⁇ domain that specifically recognizes BCMA in BCMA-positive target cells (NCI H929) and BCMA
- T cells and CAR-T cells were co-incubated with NCI H929 cells or K562 cells for 6 hours in a 37°C, 5% CO2 incubator (the ratio of effector cells to target cells was 10:1, 5:1, 1:1, respectively). 1), collect the supernatant, and use the CBA Human Th1/Th2/Th17 Cytokine Kit (BD Biosciences) to detect cytokine expression.
- Figure 19 shows that, compared with T cells, BCMA CAR-T cells co-incubated with BCMA-positive target cells (NCI H929) significantly enhanced the induction effect of IFN- ⁇ , and at the same time, with the increase of the ratio of effector cells to NCI H929 cells , the cytokine release effect was enhanced.
- BCMA CAR-T cells co-incubated with BCMA-positive target cells (NCI H929) significantly enhanced the induction effect of IFN- ⁇ , and at the same time, with the increase of the ratio of effector cells to NCI H929 cells , the cytokine release effect was enhanced.
- the induction effect of IFN- ⁇ was not significantly different from that of the T cell group.
- the above experimental results show that the CAR-T cells of the present invention can specifically recognize the BCMA target antigen, thereby producing cytotoxicity-related cytokines.
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Abstract
Description
Claims (15)
- 一种特异性结合BCMA的分离的抗体,包括重链可变结构域VH和轻链可变结构域VL,所述VH包括:包含SEQ ID NO:1的VH-CDR1、包含SEQ ID NO:2的VH-CDR2和包含SEQ ID NO:3的VH-CDR3;所述VL包括:包含SEQ ID NO:4的VL-CDR1,包含SEQ ID NO:5的VL-CDR2和包含SEQ ID NO:21的VL-CDR3。
- 如权利要求1所述的抗体,其中,所述VH-CDR1包含选自由SEQ ID NO:7、8和9组成的组中的氨基酸序列;所述VH-CDR2包含选自由SEQ ID NO:10、11、12和13组成的组中的氨基酸序列;所述VH-CDR3包含选自由SEQ ID NO:14、15和16组成的组中的氨基酸序列;所述VL-CDR1包含选自由SEQ ID NO:17、18和19组成的组中的氨基酸序列;所述VL-CDR2包含SEQ ID NO:20的氨基酸序列;所述VL-CDR3包含SEQ ID NO:21的氨基酸序列。
- 如权利要求1所述的抗体,其中,所述抗体包括:1)VH,其包括:包含SEQ ID NO:7的VH-CDR1,包含SEQ ID NO:10的VH-CDR2和包含SEQ ID NO:14的VH-CDR3;VL,其包括:包含SEQ ID NO:17的VL-CDR1,包含SEQ ID NO:20的VL-CDR2和包含SEQ ID NO:21的VL-CDR3;2)VH,其包括:包含SEQ ID NO:8的VH-CDR1,包含SEQ ID NO:11的VH-CDR2和包含SEQ ID NO:15的VH-CDR3;VL,其包括:包含SEQ ID NO:18的VL-CDR1,包含SEQ ID NO:20的VL-CDR2和包含SEQ ID NO:21的VL-CDR3;;3)VH,其包括:包含SEQ ID NO:8的VH-CDR1,包含SEQ ID NO:12的VH-CDR2和包含SEQ ID NO:14的VH-CDR3;VL,其包括:包含SEQ ID NO:17的VL-CDR1,包含SEQ ID NO:20的VL-CDR2和包含SEQ ID NO:21的VL-CDR3;;4)VH,其包括:包含SEQ ID NO:9的VH-CDR1,包含SEQ ID NO:13的VH-CDR2和包含SEQ ID NO:16的VH-CDR3;VL,其包括:包含SEQ ID NO:19的VL-CDR1,包含SEQ ID NO:20的VL-CDR2和包含SEQ ID NO:21的VL-CDR3。
- 如权利要求1所述的抗体,其中所述VH包含选自由SEQ ID NO:23、24、 25、26、27、28、29、30、31和32组成的组中的氨基酸序列,或包含与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列;所述VL包含选自由SEQ ID NO:33、35、36、37、38、39、40、41、42和43组成的组中的氨基酸序列,或包含与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列。
- 如权利要求1所述的抗体,包括:1)包含SEQ ID NO:23或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VH;和包含SEQ ID NO:33或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VL;2)包含SEQ ID NO:24或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VH;和包含SEQ ID NO:33或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VL;3)包含SEQ ID NO:25或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VH;和包含SEQ ID NO:35或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VL;4)包含SEQ ID NO:26或包含与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VH;和包含SEQ ID NO:36或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VL;5)包含SEQ ID NO:27或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VH;和包含SEQ ID NO:37或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VL;6)包含SEQ ID NO:28或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VH;和包含SEQ ID NO:38或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VL;7)包含SEQ ID NO:29或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VH;和包含SEQ ID NO:33或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VL;8)包含SEQ ID NO:30或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VH;和包含SEQ ID NO:39或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VL;9)包含SEQ ID NO:31或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VH;和包含SEQ ID NO:40或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VL;10)包含SEQ ID NO:32或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VH;和包含SEQ ID NO:41或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VL;11)包含SEQ ID NO:28或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VH;和包含SEQ ID NO:42或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VL;或12)包含SEQ ID NO:29或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VH;和包含SEQ ID NO:43或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列的VL。
- 如权利要求1所述的抗体,其包含SEQ ID NO:44、45、47、48、49、50、51、52、53、54、55或56所示的氨基酸序列或与其具有至少85%、优选至少90%、更优选至少95%、进一步优选至少99%同一性的氨基酸序列。
- 如权利要求1-6中任一项所述的抗体,其中所述抗体为scFv。
- 一种靶向BCMA的嵌合抗原受体,其包含如权利要求7所述的scFv,其可 选择地进一步包括铰链区、跨膜区、共刺激结构域、胞内信号转导结构域中的至少一种。
- 如权利要求8所述的嵌合抗原受体,其中所述共刺激结构域选自CD27、CD28、4-1BB、OX-40、CD30、CD40、PD-1、ICOS、LFA-1、CD-2、CD7、LIGHT、NKG2C、B7-H3或其任意组合;优选地,所述共刺激结构域选自4-1BB,所述4-1BB包含如SEQ ID NO:57所述的氨基酸序列;优选地,所述胞内信号转导结构域选自CD3ζ,包含如SEQ ID NO:58所述的氨基酸序列。
- 一种分离的核酸分子,其编码如权利要求1-7任一项所述的抗体或8-9任一项所述的嵌合抗原受体。
- 一种载体,其含有如权利要求10所述的核酸分子。
- 一种宿主细胞,包括如权利要求10所述的核酸分子或如权利要求11所述的载体。
- 一种组合物或试剂盒,其包含如权利要求1至7中任一项所述的抗体、如权利要求8-9任一项所述的嵌合抗原受体、如权利要求10所述的核酸分子、如权利要求11所述的载体、如权利要求12所述的宿主细胞中的至少一种,以及药学可接受的赋形剂、稀释剂或载体。
- 如权利要求1至7中任一项所述的抗体、如权利要求7-8任一项所述的嵌合抗原受体、如权利要求9所述的核酸分子、如权利要求10所述的载体、如权利要求11所述的宿主细胞、或如权利要求12所述的组合物在制备用于预防或治疗受试者的B细胞相关肿瘤疾病、自身免疫疾病、病毒或细菌引起的感染性疾病的药物中的用途。
- 如权利要求13所述的用途,其中所述的B细胞相关肿瘤疾病选自:急性白血病诸如急性淋巴细胞白血病、急性髓细胞白血病、急性骨髓性白血病和成髓细胞性、前髓细胞性、粒-单核细胞型、单核细胞性和红白血病;慢性白血病诸如慢性髓细胞(粒细胞性)白血病、慢性骨髓性白血病和慢性淋巴细胞白血病;真性红细胞增多症、淋巴瘤、套细胞淋巴瘤、弥漫大B-细胞淋巴瘤、霍奇金氏疾病、非霍奇金氏淋巴瘤、多发性骨髓瘤、瓦尔登斯特伦氏巨球蛋白血症、重链病、骨髓增生异 常综合征、多毛细胞白血病和脊髓发育不良中的至少一种。
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