WO2022003359A1 - Methods for analysing viruses using raman spectroscopy - Google Patents
Methods for analysing viruses using raman spectroscopy Download PDFInfo
- Publication number
- WO2022003359A1 WO2022003359A1 PCT/GB2021/051673 GB2021051673W WO2022003359A1 WO 2022003359 A1 WO2022003359 A1 WO 2022003359A1 GB 2021051673 W GB2021051673 W GB 2021051673W WO 2022003359 A1 WO2022003359 A1 WO 2022003359A1
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- viral
- wavenumber
- sample
- wavenumber ranges
- vip
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Ceased
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Classifications
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/65—Raman scattering
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01J—MEASUREMENT OF INTENSITY, VELOCITY, SPECTRAL CONTENT, POLARISATION, PHASE OR PULSE CHARACTERISTICS OF INFRARED, VISIBLE OR ULTRAVIOLET LIGHT; COLORIMETRY; RADIATION PYROMETRY
- G01J3/00—Spectrometry; Spectrophotometry; Monochromators; Measuring colours
- G01J3/28—Investigating the spectrum
- G01J3/44—Raman spectrometry; Scattering spectrometry ; Fluorescence spectrometry
- G01J3/4412—Scattering spectrometry
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
- G01N33/569—Immunoassay; Biospecific binding assay; Materials therefor for microorganisms, e.g. protozoa, bacteria, viruses
- G01N33/56983—Viruses
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2201/00—Features of devices classified in G01N21/00
- G01N2201/12—Circuits of general importance; Signal processing
- G01N2201/126—Microprocessor processing
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2201/00—Features of devices classified in G01N21/00
- G01N2201/12—Circuits of general importance; Signal processing
- G01N2201/129—Using chemometrical methods
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2201/00—Features of devices classified in G01N21/00
- G01N2201/12—Circuits of general importance; Signal processing
- G01N2201/129—Using chemometrical methods
- G01N2201/1296—Using chemometrical methods using neural networks
Definitions
- One advantage of the present invention is that viral nucleic acid abundance and viral structural molecule abundance, and the ratio of viral nucleic acids to viruses comprising one or more viral structural molecules, can be continuously monitored in real-time. There is no need to process samples from the viral culture medium to generate an estimate of viral nucleic acid abundance, viral structural molecule abundance and the ratio of viral nucleic acids to viruses comprising one or more viral structural molecules. Measurements may be made in situ , if desirable. In other words, measurements may be made directly on the viral culture medium in the growth incubator. Measurements may be made ex situ , if desirable. In other words, measurements may be made directly on the viral culture medium in an aliquot of the viral culture medium taken from the growth incubator or separated from the main chamber of the growth incubator.
- the change in the ratio in the sample may be used to determine the start phase, the production phase and/or the stationary phase of a viral production process. Any such method may be used to determine the optimal conditions for a viral production process. Any such method may be used to assess a process downstream of a viral production process.
- viral vectors may be based on wild type viruses, they are generally modified as compared to wild type viruses and are commonly used to introduce genetic material into target cells (e.g. genes of therapeutic use). Viral vectors therefore have particular utility, e.g. for gene therapy, cell therapy or for other molecular applications, and their production is of enormous importance to the gene therapy and cell therapy industries. It will be well understood that for example, modifications may be made to improve safety of viral vectors for gene and/or cell therapy or to improve for example the size of gene which may be carried by the vector.
- RNA viral genome and is marked by the presence of the psi sequence which ensures that the genome is subsequently packaged into the virion.
- lentiviral vectors may be produced by the transformation and expression of three (for second generation systems) or four (for third generation systems) plasmids in a producer cell line. Plasmids for the production of viral vectors are commercially available, e.g. Lenti-Pac and AAV Prime (GeneCopoeia).
- “Viral components” are considered herein to be any part of the virus, virus particle or viral vector.
- the Stokes scattered light is monitored as the measured signals are more intense at ambient temperatures.
- Figure 2 shows some example spectra; the different peaks represent the presence of different modes of vibration; some bands are overlapped regions of several underlying peaks.
- the different peaks represent the presence of different modes of vibration; some bands are overlapped regions of several underlying peaks.
- the plurality of wavenumber ranges in the Raman spectrum which are measured may comprise 5 or more of the wavenumber ranges 1 to 28 as listed in Table 3 below and wherein the VIP is > 1.00.
- the plurality of wavenumber ranges in the Raman spectrum which are measured may comprise 10 or more of the wavenumber ranges 1 to 28 as listed in Table 3 below and wherein the VIP is > 1.00.
- the plurality of wavenumber ranges in the Raman spectrum which are measured may comprise 15 or more of the wavenumber ranges 1 to 28 as listed in Table 3 below and wherein the VIP is > 1.00.
- the results show that the model using the Raman spectroscopy data is consistent with offline measurements of viral titre over time.
- a comparison of the titres obtained from the RT-qPCR assay and P24 ELISA are shown in Figure 10.
- AAV8 particles were detected using two steps 1) a biotin- conjugated anti-AAV8 antibody was bound to the immune complex 2) a streptavidin peroxidase conjugate reacts with the biotin molecules. Addition of the tetramethylbenzidine (TMB) substrate solution resulted in a colour reaction, which is proportional to the amount of specifically bound viral particles. The absorbance is then measured photometrically at 450nm.
- TMB tetramethylbenzidine
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- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Physics & Mathematics (AREA)
- Immunology (AREA)
- Chemical & Material Sciences (AREA)
- General Physics & Mathematics (AREA)
- Engineering & Computer Science (AREA)
- Biochemistry (AREA)
- Analytical Chemistry (AREA)
- General Health & Medical Sciences (AREA)
- Pathology (AREA)
- Urology & Nephrology (AREA)
- Molecular Biology (AREA)
- Hematology (AREA)
- Biomedical Technology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Virology (AREA)
- Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
- Biotechnology (AREA)
- Medicinal Chemistry (AREA)
- Food Science & Technology (AREA)
- Microbiology (AREA)
- Cell Biology (AREA)
- Tropical Medicine & Parasitology (AREA)
- Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
- Investigating Or Analysing Biological Materials (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Priority Applications (8)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP21742868.9A EP4176245A1 (en) | 2020-07-01 | 2021-07-01 | Methods for analysing viruses using raman spectroscopy |
| CN202180052867.XA CN116034263A (zh) | 2020-07-01 | 2021-07-01 | 用拉曼光谱分析病毒的方法 |
| AU2021301333A AU2021301333A1 (en) | 2020-07-01 | 2021-07-01 | Methods for analysing viruses using Raman spectroscopy |
| CA3182045A CA3182045A1 (en) | 2020-07-01 | 2021-07-01 | Methods for analysing viruses using raman spectroscopy |
| KR1020237003599A KR20230028556A (ko) | 2020-07-01 | 2021-07-01 | 라만 분광법을 사용하여 바이러스를 분석하는 방법 |
| IL299065A IL299065A (en) | 2020-07-01 | 2021-07-01 | Methods for analyzing viruses using Raman spectroscopy |
| JP2022581700A JP2023532568A (ja) | 2020-07-01 | 2021-07-01 | ラマン分光法を使用したウイルスの分析方法 |
| US18/003,629 US20230236128A1 (en) | 2020-07-01 | 2021-07-01 | Methods for analysing viruses using raman spectroscopy |
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| GBGB2010104.4A GB202010104D0 (en) | 2020-07-01 | 2020-07-01 | Method |
| GB2010104.4 | 2020-07-01 |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| WO2022003359A1 true WO2022003359A1 (en) | 2022-01-06 |
Family
ID=71949851
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/GB2021/051673 Ceased WO2022003359A1 (en) | 2020-07-01 | 2021-07-01 | Methods for analysing viruses using raman spectroscopy |
Country Status (10)
| Country | Link |
|---|---|
| US (1) | US20230236128A1 (https=) |
| EP (1) | EP4176245A1 (https=) |
| JP (1) | JP2023532568A (https=) |
| KR (1) | KR20230028556A (https=) |
| CN (1) | CN116034263A (https=) |
| AU (1) | AU2021301333A1 (https=) |
| CA (1) | CA3182045A1 (https=) |
| GB (1) | GB202010104D0 (https=) |
| IL (1) | IL299065A (https=) |
| WO (1) | WO2022003359A1 (https=) |
Cited By (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2023091740A1 (en) * | 2021-11-19 | 2023-05-25 | Janssen Biotech, Inc. | Methods for determination of virus titer in a sample using raman spectroscopy |
| WO2023227438A1 (en) | 2022-05-23 | 2023-11-30 | F. Hoffmann-La Roche Ag | Raman-based method for the differentiation of aav particle serotype and aav particle loading status |
| WO2024092247A1 (en) * | 2022-10-27 | 2024-05-02 | Hyperspectral Corp. | Systems and methods for particle of interest detection |
| US20240219299A1 (en) * | 2019-03-07 | 2024-07-04 | Missouri State University | Ir spectra matching systems and methods |
| US12398176B2 (en) | 2018-08-27 | 2025-08-26 | Regeneron Pharmaceuticals, Inc. | Use of Raman spectroscopy in downstream purification |
Families Citing this family (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN117783088B (zh) * | 2024-02-23 | 2024-05-14 | 广州贝拓科学技术有限公司 | 激光显微拉曼光谱仪的控制模型训练方法及装置、设备 |
| WO2025250834A1 (en) * | 2024-05-31 | 2025-12-04 | Thermo Scientific Portable Analytical Instruments Inc. | Raman-based quality monitoring of biopharmaceutical production processes |
| CN119964654B (zh) * | 2025-04-09 | 2025-11-28 | 中国农业科学院北京畜牧兽医研究所 | 一种基于拉曼光谱的肌纤维类型分析方法、系统、设备及介质 |
Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2020136376A1 (en) * | 2018-12-24 | 2020-07-02 | Cell Therapy Catapult Limited | Methods for determining viral titre using raman spectroscopy |
Family Cites Families (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US7940387B2 (en) * | 2005-03-15 | 2011-05-10 | Univeristy Of Georgia Research Foundation, Inc. | Surface enhanced Raman spectroscopy (SERS) systems for the detection of viruses and methods of use thereof |
| US8712141B2 (en) * | 2007-05-30 | 2014-04-29 | Intelligent Virus Imagaing Inc. | Method for counting and segmenting viral particles in an image |
| JP2020534829A (ja) * | 2017-09-27 | 2020-12-03 | ユニバーセルズ エス.エー.Univercells S.A. | ウイルスワクチンなどの生体分子の製造システムおよび製造方法 |
-
2020
- 2020-07-01 GB GBGB2010104.4A patent/GB202010104D0/en not_active Ceased
-
2021
- 2021-07-01 JP JP2022581700A patent/JP2023532568A/ja active Pending
- 2021-07-01 AU AU2021301333A patent/AU2021301333A1/en not_active Abandoned
- 2021-07-01 IL IL299065A patent/IL299065A/en unknown
- 2021-07-01 WO PCT/GB2021/051673 patent/WO2022003359A1/en not_active Ceased
- 2021-07-01 KR KR1020237003599A patent/KR20230028556A/ko active Pending
- 2021-07-01 EP EP21742868.9A patent/EP4176245A1/en active Pending
- 2021-07-01 CA CA3182045A patent/CA3182045A1/en active Pending
- 2021-07-01 US US18/003,629 patent/US20230236128A1/en active Pending
- 2021-07-01 CN CN202180052867.XA patent/CN116034263A/zh active Pending
Patent Citations (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2020136376A1 (en) * | 2018-12-24 | 2020-07-02 | Cell Therapy Catapult Limited | Methods for determining viral titre using raman spectroscopy |
Non-Patent Citations (13)
| Title |
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| BARNES, R. J.DHANOA, M. S.LISTER, S. J.: "Standard Normal Variate Transformation and De-trending of Near-Infrared Diffuse Reflectance Spectra", APPLIED SPECTROSCOPY, vol. 43, no. 5, 1989, pages 772 - 777, XP000560625, DOI: 10.1366/0003702894202201 |
| BUCKLEY, K.RYDER, A. G.: "Applications of Raman Spectroscopy in Biopharmaceutical Manufacturing: A Short Review", APPLIED SPECTROSCOPY, vol. 71, no. 6, 2017, pages l085 - 1116 |
| HU H.BAI, J.XIA, G.ZHANG, W.MA, Y.: "Improved Baseline Correction Method Based on Polynomial Fitting for Raman Spectroscopy", PHOTONIC SENSORS, vol. 8, no. 4, 2018, pages 332 - 340 |
| HUANG, J.ROMERO-TORRES, S.MOSHGBAR, M.: "Practical Considerations in Data Pretreatment for NIR and Raman Spectroscopy", AMERICAN PHARMACEUTICAL REVIEW, 2010 |
| JEREMY D. DRISKELL ET AL: "Rapid and Sensitive Detection of Rotavirus Molecular Signatures Using Surface Enhanced Raman Spectroscopy", PLOS ONE, vol. 5, no. 4, 19 April 2010 (2010-04-19), pages e10222, XP055178522, DOI: 10.1371/journal.pone.0010222 * |
| KOCH, M.SUHR, C.ROTH, B.MEINHARDT-WOLLWEBER, M.: "Iterative morphological and mollifier-based baseline correction for Raman spectra", JOURNAL OF RAMAN SPECTROSCOPY, vol. 48, no. 2, 2017, pages 336 - 342 |
| LEE, J. H.KIM, B. C.OH, B. K.CHOI, J. W.: "Rapid and Sensitive Determination of HIV-1 Virus Based on Surface Enhanced Raman Spectroscopy", J. BIOMED. NANOTECHNOL., vol. 11, no. 12, 2015, pages 2223 - 2230 |
| LIEBER, C. A.MAHADEVAN-JANSEN, A.: "Automated method for subtraction of fluorescence from biological Raman spectra", APPLIED SPECTROSCOPY, vol. 57, no. 11, 2003, pages 1363 - 1367, XP002660248 |
| OTANGE BEN O ET AL: "Conductive silver paste smeared glass substrates for label-free Raman spectroscopic detection of HIV-1 and HIV-1 p24 antigen in blood plasma", ANALYTICAL AND BIOANALYTICAL CHEMISTRY, SPRINGER BERLIN HEIDELBERG, DE, vol. 409, no. 12, 2 March 2017 (2017-03-02), pages 3253 - 3259, XP036213408, ISSN: 1618-2642, [retrieved on 20170302], DOI: 10.1007/S00216-017-0267-0 * |
| SAVITZKY, A.GOLAY, M. J. E.: "Smoothing and Differentiation of Data by Simplified Least Squares Procedures", ANALYTICAL CHEMISTRY, vol. 36, no. 8, 1964, pages I627 - 1639, XP000560623, DOI: 10.1021/ac60214a047 |
| WOLD, S.SJOSTROM, MERIKSSON, L.: "PLS-regression: a basic tool of chemometrics", CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS, vol. 58, 2001, pages 109 - 130, XP004320297, DOI: 10.1016/S0169-7439(01)00155-1 |
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Cited By (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US12398176B2 (en) | 2018-08-27 | 2025-08-26 | Regeneron Pharmaceuticals, Inc. | Use of Raman spectroscopy in downstream purification |
| US20240219299A1 (en) * | 2019-03-07 | 2024-07-04 | Missouri State University | Ir spectra matching systems and methods |
| US12429419B2 (en) * | 2019-03-07 | 2025-09-30 | Missouri State University | IR spectra matching systems and methods |
| WO2023091740A1 (en) * | 2021-11-19 | 2023-05-25 | Janssen Biotech, Inc. | Methods for determination of virus titer in a sample using raman spectroscopy |
| US12422367B2 (en) | 2021-11-19 | 2025-09-23 | Janssen Biotech, Inc. | Methods for determination of virus titer in a sample using Raman spectroscopy |
| WO2023227438A1 (en) | 2022-05-23 | 2023-11-30 | F. Hoffmann-La Roche Ag | Raman-based method for the differentiation of aav particle serotype and aav particle loading status |
| WO2024092247A1 (en) * | 2022-10-27 | 2024-05-02 | Hyperspectral Corp. | Systems and methods for particle of interest detection |
Also Published As
| Publication number | Publication date |
|---|---|
| JP2023532568A (ja) | 2023-07-28 |
| IL299065A (en) | 2023-02-01 |
| US20230236128A1 (en) | 2023-07-27 |
| EP4176245A1 (en) | 2023-05-10 |
| KR20230028556A (ko) | 2023-02-28 |
| GB202010104D0 (en) | 2020-08-12 |
| CN116034263A (zh) | 2023-04-28 |
| CA3182045A1 (en) | 2022-01-06 |
| AU2021301333A1 (en) | 2023-02-02 |
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