WO2022003359A1 - Methods for analysing viruses using raman spectroscopy - Google Patents

Methods for analysing viruses using raman spectroscopy Download PDF

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Publication number
WO2022003359A1
WO2022003359A1 PCT/GB2021/051673 GB2021051673W WO2022003359A1 WO 2022003359 A1 WO2022003359 A1 WO 2022003359A1 GB 2021051673 W GB2021051673 W GB 2021051673W WO 2022003359 A1 WO2022003359 A1 WO 2022003359A1
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WIPO (PCT)
Prior art keywords
viral
wavenumber
sample
wavenumber ranges
vip
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Ceased
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PCT/GB2021/051673
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English (en)
French (fr)
Inventor
John CHURCHWELL
Marc Olivier BARADEZ
Damian Marshall
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Cell Therapy Catapult Ltd
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Cell Therapy Catapult Ltd
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Filing date
Publication date
Application filed by Cell Therapy Catapult Ltd filed Critical Cell Therapy Catapult Ltd
Priority to EP21742868.9A priority Critical patent/EP4176245A1/en
Priority to CN202180052867.XA priority patent/CN116034263A/zh
Priority to AU2021301333A priority patent/AU2021301333A1/en
Priority to CA3182045A priority patent/CA3182045A1/en
Priority to KR1020237003599A priority patent/KR20230028556A/ko
Priority to IL299065A priority patent/IL299065A/en
Priority to JP2022581700A priority patent/JP2023532568A/ja
Priority to US18/003,629 priority patent/US20230236128A1/en
Publication of WO2022003359A1 publication Critical patent/WO2022003359A1/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

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    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/65Raman scattering
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01JMEASUREMENT OF INTENSITY, VELOCITY, SPECTRAL CONTENT, POLARISATION, PHASE OR PULSE CHARACTERISTICS OF INFRARED, VISIBLE OR ULTRAVIOLET LIGHT; COLORIMETRY; RADIATION PYROMETRY
    • G01J3/00Spectrometry; Spectrophotometry; Monochromators; Measuring colours
    • G01J3/28Investigating the spectrum
    • G01J3/44Raman spectrometry; Scattering spectrometry ; Fluorescence spectrometry
    • G01J3/4412Scattering spectrometry
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/569Immunoassay; Biospecific binding assay; Materials therefor for microorganisms, e.g. protozoa, bacteria, viruses
    • G01N33/56983Viruses
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2201/00Features of devices classified in G01N21/00
    • G01N2201/12Circuits of general importance; Signal processing
    • G01N2201/126Microprocessor processing
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2201/00Features of devices classified in G01N21/00
    • G01N2201/12Circuits of general importance; Signal processing
    • G01N2201/129Using chemometrical methods
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2201/00Features of devices classified in G01N21/00
    • G01N2201/12Circuits of general importance; Signal processing
    • G01N2201/129Using chemometrical methods
    • G01N2201/1296Using chemometrical methods using neural networks

Definitions

  • One advantage of the present invention is that viral nucleic acid abundance and viral structural molecule abundance, and the ratio of viral nucleic acids to viruses comprising one or more viral structural molecules, can be continuously monitored in real-time. There is no need to process samples from the viral culture medium to generate an estimate of viral nucleic acid abundance, viral structural molecule abundance and the ratio of viral nucleic acids to viruses comprising one or more viral structural molecules. Measurements may be made in situ , if desirable. In other words, measurements may be made directly on the viral culture medium in the growth incubator. Measurements may be made ex situ , if desirable. In other words, measurements may be made directly on the viral culture medium in an aliquot of the viral culture medium taken from the growth incubator or separated from the main chamber of the growth incubator.
  • the change in the ratio in the sample may be used to determine the start phase, the production phase and/or the stationary phase of a viral production process. Any such method may be used to determine the optimal conditions for a viral production process. Any such method may be used to assess a process downstream of a viral production process.
  • viral vectors may be based on wild type viruses, they are generally modified as compared to wild type viruses and are commonly used to introduce genetic material into target cells (e.g. genes of therapeutic use). Viral vectors therefore have particular utility, e.g. for gene therapy, cell therapy or for other molecular applications, and their production is of enormous importance to the gene therapy and cell therapy industries. It will be well understood that for example, modifications may be made to improve safety of viral vectors for gene and/or cell therapy or to improve for example the size of gene which may be carried by the vector.
  • RNA viral genome and is marked by the presence of the psi sequence which ensures that the genome is subsequently packaged into the virion.
  • lentiviral vectors may be produced by the transformation and expression of three (for second generation systems) or four (for third generation systems) plasmids in a producer cell line. Plasmids for the production of viral vectors are commercially available, e.g. Lenti-Pac and AAV Prime (GeneCopoeia).
  • “Viral components” are considered herein to be any part of the virus, virus particle or viral vector.
  • the Stokes scattered light is monitored as the measured signals are more intense at ambient temperatures.
  • Figure 2 shows some example spectra; the different peaks represent the presence of different modes of vibration; some bands are overlapped regions of several underlying peaks.
  • the different peaks represent the presence of different modes of vibration; some bands are overlapped regions of several underlying peaks.
  • the plurality of wavenumber ranges in the Raman spectrum which are measured may comprise 5 or more of the wavenumber ranges 1 to 28 as listed in Table 3 below and wherein the VIP is > 1.00.
  • the plurality of wavenumber ranges in the Raman spectrum which are measured may comprise 10 or more of the wavenumber ranges 1 to 28 as listed in Table 3 below and wherein the VIP is > 1.00.
  • the plurality of wavenumber ranges in the Raman spectrum which are measured may comprise 15 or more of the wavenumber ranges 1 to 28 as listed in Table 3 below and wherein the VIP is > 1.00.
  • the results show that the model using the Raman spectroscopy data is consistent with offline measurements of viral titre over time.
  • a comparison of the titres obtained from the RT-qPCR assay and P24 ELISA are shown in Figure 10.
  • AAV8 particles were detected using two steps 1) a biotin- conjugated anti-AAV8 antibody was bound to the immune complex 2) a streptavidin peroxidase conjugate reacts with the biotin molecules. Addition of the tetramethylbenzidine (TMB) substrate solution resulted in a colour reaction, which is proportional to the amount of specifically bound viral particles. The absorbance is then measured photometrically at 450nm.
  • TMB tetramethylbenzidine

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  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Chemical & Material Sciences (AREA)
  • General Physics & Mathematics (AREA)
  • Engineering & Computer Science (AREA)
  • Biochemistry (AREA)
  • Analytical Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Pathology (AREA)
  • Urology & Nephrology (AREA)
  • Molecular Biology (AREA)
  • Hematology (AREA)
  • Biomedical Technology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Virology (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Biotechnology (AREA)
  • Medicinal Chemistry (AREA)
  • Food Science & Technology (AREA)
  • Microbiology (AREA)
  • Cell Biology (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
PCT/GB2021/051673 2020-07-01 2021-07-01 Methods for analysing viruses using raman spectroscopy Ceased WO2022003359A1 (en)

Priority Applications (8)

Application Number Priority Date Filing Date Title
EP21742868.9A EP4176245A1 (en) 2020-07-01 2021-07-01 Methods for analysing viruses using raman spectroscopy
CN202180052867.XA CN116034263A (zh) 2020-07-01 2021-07-01 用拉曼光谱分析病毒的方法
AU2021301333A AU2021301333A1 (en) 2020-07-01 2021-07-01 Methods for analysing viruses using Raman spectroscopy
CA3182045A CA3182045A1 (en) 2020-07-01 2021-07-01 Methods for analysing viruses using raman spectroscopy
KR1020237003599A KR20230028556A (ko) 2020-07-01 2021-07-01 라만 분광법을 사용하여 바이러스를 분석하는 방법
IL299065A IL299065A (en) 2020-07-01 2021-07-01 Methods for analyzing viruses using Raman spectroscopy
JP2022581700A JP2023532568A (ja) 2020-07-01 2021-07-01 ラマン分光法を使用したウイルスの分析方法
US18/003,629 US20230236128A1 (en) 2020-07-01 2021-07-01 Methods for analysing viruses using raman spectroscopy

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
GBGB2010104.4A GB202010104D0 (en) 2020-07-01 2020-07-01 Method
GB2010104.4 2020-07-01

Publications (1)

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WO2022003359A1 true WO2022003359A1 (en) 2022-01-06

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US (1) US20230236128A1 (https=)
EP (1) EP4176245A1 (https=)
JP (1) JP2023532568A (https=)
KR (1) KR20230028556A (https=)
CN (1) CN116034263A (https=)
AU (1) AU2021301333A1 (https=)
CA (1) CA3182045A1 (https=)
GB (1) GB202010104D0 (https=)
IL (1) IL299065A (https=)
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Cited By (5)

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Publication number Priority date Publication date Assignee Title
WO2023091740A1 (en) * 2021-11-19 2023-05-25 Janssen Biotech, Inc. Methods for determination of virus titer in a sample using raman spectroscopy
WO2023227438A1 (en) 2022-05-23 2023-11-30 F. Hoffmann-La Roche Ag Raman-based method for the differentiation of aav particle serotype and aav particle loading status
WO2024092247A1 (en) * 2022-10-27 2024-05-02 Hyperspectral Corp. Systems and methods for particle of interest detection
US20240219299A1 (en) * 2019-03-07 2024-07-04 Missouri State University Ir spectra matching systems and methods
US12398176B2 (en) 2018-08-27 2025-08-26 Regeneron Pharmaceuticals, Inc. Use of Raman spectroscopy in downstream purification

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CN117783088B (zh) * 2024-02-23 2024-05-14 广州贝拓科学技术有限公司 激光显微拉曼光谱仪的控制模型训练方法及装置、设备
WO2025250834A1 (en) * 2024-05-31 2025-12-04 Thermo Scientific Portable Analytical Instruments Inc. Raman-based quality monitoring of biopharmaceutical production processes
CN119964654B (zh) * 2025-04-09 2025-11-28 中国农业科学院北京畜牧兽医研究所 一种基于拉曼光谱的肌纤维类型分析方法、系统、设备及介质

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Cited By (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US12398176B2 (en) 2018-08-27 2025-08-26 Regeneron Pharmaceuticals, Inc. Use of Raman spectroscopy in downstream purification
US20240219299A1 (en) * 2019-03-07 2024-07-04 Missouri State University Ir spectra matching systems and methods
US12429419B2 (en) * 2019-03-07 2025-09-30 Missouri State University IR spectra matching systems and methods
WO2023091740A1 (en) * 2021-11-19 2023-05-25 Janssen Biotech, Inc. Methods for determination of virus titer in a sample using raman spectroscopy
US12422367B2 (en) 2021-11-19 2025-09-23 Janssen Biotech, Inc. Methods for determination of virus titer in a sample using Raman spectroscopy
WO2023227438A1 (en) 2022-05-23 2023-11-30 F. Hoffmann-La Roche Ag Raman-based method for the differentiation of aav particle serotype and aav particle loading status
WO2024092247A1 (en) * 2022-10-27 2024-05-02 Hyperspectral Corp. Systems and methods for particle of interest detection

Also Published As

Publication number Publication date
JP2023532568A (ja) 2023-07-28
IL299065A (en) 2023-02-01
US20230236128A1 (en) 2023-07-27
EP4176245A1 (en) 2023-05-10
KR20230028556A (ko) 2023-02-28
GB202010104D0 (en) 2020-08-12
CN116034263A (zh) 2023-04-28
CA3182045A1 (en) 2022-01-06
AU2021301333A1 (en) 2023-02-02

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