WO2021222363A1 - Cycloalkyl pyrimidines as ferroportin inhibitors - Google Patents

Cycloalkyl pyrimidines as ferroportin inhibitors Download PDF

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WO2021222363A1
WO2021222363A1 PCT/US2021/029574 US2021029574W WO2021222363A1 WO 2021222363 A1 WO2021222363 A1 WO 2021222363A1 US 2021029574 W US2021029574 W US 2021029574W WO 2021222363 A1 WO2021222363 A1 WO 2021222363A1
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alkyl
group
compound
pharmaceutically acceptable
heterocyclyl
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PCT/US2021/029574
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English (en)
French (fr)
Inventor
Qing Xu
Carsten ALT
Zhe Li
Shahul Nilar
Peter Michael RADEMACHER
Calvin Wesley Yee
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Global Blood Therapeutics, Inc.
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Priority to CR20220556A priority Critical patent/CR20220556A/es
Priority to CN202180047289.0A priority patent/CN115836063A/zh
Priority to EP21726289.8A priority patent/EP4143178A1/en
Priority to KR1020227041423A priority patent/KR20230007441A/ko
Priority to BR112022021806A priority patent/BR112022021806A2/pt
Priority to IL297624A priority patent/IL297624A/en
Priority to PE2022002516A priority patent/PE20230845A1/es
Priority to MX2022013518A priority patent/MX2022013518A/es
Application filed by Global Blood Therapeutics, Inc. filed Critical Global Blood Therapeutics, Inc.
Priority to CA3180661A priority patent/CA3180661A1/en
Priority to JP2022566040A priority patent/JP2023524033A/ja
Priority to AU2021263818A priority patent/AU2021263818A1/en
Publication of WO2021222363A1 publication Critical patent/WO2021222363A1/en
Priority to DO2022000236A priority patent/DOP2022000236A/es
Priority to CONC2022/0015395A priority patent/CO2022015395A2/es

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    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
    • C07D401/14Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
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    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/435Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with one nitrogen as the only ring hetero atom
    • A61K31/44Non condensed pyridines; Hydrogenated derivatives thereof
    • A61K31/4427Non condensed pyridines; Hydrogenated derivatives thereof containing further heterocyclic ring systems
    • A61K31/444Non condensed pyridines; Hydrogenated derivatives thereof containing further heterocyclic ring systems containing a six-membered ring with nitrogen as a ring heteroatom, e.g. amrinone
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    • A61K31/495Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having six-membered rings with two or more nitrogen atoms as the only ring heteroatoms, e.g. piperazine or tetrazines
    • A61K31/505Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim
    • A61K31/517Pyrimidines; Hydrogenated pyrimidines, e.g. trimethoprim ortho- or peri-condensed with carbocyclic ring systems, e.g. quinazoline, perimidine
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    • A61K31/55Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having seven-membered rings, e.g. azelastine, pentylenetetrazole
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    • A61K31/55Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having seven-membered rings, e.g. azelastine, pentylenetetrazole
    • A61K31/553Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having seven-membered rings, e.g. azelastine, pentylenetetrazole having at least one nitrogen and one oxygen as ring hetero atoms, e.g. loxapine, staurosporine
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    • A61P13/00Drugs for disorders of the urinary system
    • A61P13/12Drugs for disorders of the urinary system of the kidneys
    • AHUMAN NECESSITIES
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    • C07D401/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings
    • C07D401/04Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings directly linked by a ring-member-to-ring-member bond
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    • C07D403/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings
    • C07D403/04Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings directly linked by a ring-member-to-ring-member bond
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    • C07D471/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
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    • C07D471/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
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    • C07D491/02Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00 in which the condensed system contains two hetero rings
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    • C07D513/04Ortho-condensed systems

Definitions

  • FIELD FIELD
  • the subject matter described herein is directed to ferroportin inhibitor compounds, methods of making the compounds, their pharmaceutical compositions, and their use in the prophylaxis and/or treatment of diseases caused by a lack of hepcidin or iron metabolism disorders, particularly iron overload states, such as thalassemia, sickle cell disease and hemochromatosis, and also kidney injuries.
  • BACKGROUND [0003]
  • iron is an essential trace element.
  • iron is a critical component for oxygen transport, oxygen uptake, cell functions such as mitochondrial electron transport, cognitive functions, and energy metabolism. Iron is present in enzymes, hemoglobin and myoglobin, as well as in depots in the form of ferritin and hemosiderin.
  • Hepcidin Antimicrobial Peptide is a 25 amino acid peptide (Krause et al., FEBS Lett. 480, 147-150, 2000). Hepcidin has a hairpin structure with 8 cysteines that form 4 disulfide bridges (Jordan et al., J Biol Chem. 284, 24155–24167, 2009). The N-terminus appears to be important for the iron-regulatory function since deletion of the first 5 amino acids resulted in complete loss of bioactivity (Nemeth et al., Blood, 107, 328-333, 2006).
  • Hepcidin itself is limited in its use as a drug because of its complex structure which requires a complicated manufacturing, and also its limited in vivo duration of action. Continuous efforts have been made to search for hepcidin mimetics and chemical compounds that could be used to increase hepcidin levels.
  • a common approach relates to small hepcidin-derived or hepcidin-like peptides, which can be produced affordably, and can be used to treat hepcidin-related diseases and disorders such as those described herein.
  • mini-hepcidins are rationally designed small peptides that mimic hepcidin activity and may be useful for the treatment of iron overload, and also iron overload related disease symptoms.
  • acyl refers to a group -C(O)R y , wherein R y is hydrogen, alkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, aryl, heteroalkyl or heteroaryl; each of which may be optionally substituted, as defined herein.
  • R y is hydrogen, alkyl, alkenyl, alkynyl, cycloalkyl, heterocyclyl, aryl, heteroalkyl or heteroaryl; each of which may be optionally substituted, as defined herein.
  • acyl include, e.g., formyl, acetyl, cyclohexylcarbonyl, cyclohexylmethyl- carbonyl and benzoyl.
  • Aryl refers to an aromatic carbocyclic group having a single ring (e.g., monocyclic) or multiple rings (e.g., bicyclic or tricyclic) including fused systems.
  • aryl has 6 to 20 ring carbon atoms (i.e., C6-C20 aryl), 6 to 12 carbon ring atoms (i.e., C6-C12 aryl), or 6 to 10 carbon ring atoms (i.e., C 6 -C 10 aryl).
  • Examples of aryl groups include, e.g., phenyl, naphthyl, fluorenyl and anthryl.
  • heteroaryl includes 1 to 20 ring carbon atoms (i.e., C 1 -C 20 heteroaryl), 3 to 12 ring carbon atoms (i.e., C 3 -C 12 heteroaryl), or 3 to 8 carbon ring atoms (i.e., C 3 -C 8 heteroaryl), and 1 to 5 ring heteroatoms, 1 to 4 ring heteroatoms, 1 to 3 ring heteroatoms, 1 to 2 ring heteroatoms, or 1 ring heteroatom independently selected from nitrogen, oxygen and sulfur.
  • Useful compounds of Formula I’ or I include those where two R 6 groups, taken together with the atom to which each is attached, form a pyrazolyl, dioxanyl, pyridinyl, pyrimidinyl, thiazolyl, furanyl, dioxolanyl, or phenyl ring fused with Ring B, wherein said ring is optionally substituted with one substituent selected from the group consisting of hydroxy, methoxy, tetrahydropyranyl, -CH 2 OH, and methyl.
  • Useful compounds of Formula I’ or I include those where two vicinal R 6 groups, taken together with the atom to which each is attached, form a ring selected from the group consisting of
  • Useful compounds of Formula I’ or Formula I include those where R 3 and R 4 taken together with the nitrogen atom to which each is attached form a 7-membered monocyclic or bridged bicyclic heterocyclyl containing one or two heteroatoms; wherein when said 7-membered heterocyclyl contains one heteroatom, said heterocyclyl is optionally substituted with one, two, or three substituents, each independently selected from the group consisting of oxo, halogen, hydroxy, C 1 -C 3 alkoxy, cyano, and C 1 -C 3 alkyl; and when said 7-membered heterocyclyl contains two heteroatoms, said heteroatoms are each independently N or O, and said heterocyclyl is optionally substituted with one, two, or three substituents, each independently selected from the group consisting of C 1 -C 3 alkyl, cyano, oxo, halogen, halo-C 1 -C 3 alkyl, and C 6 -C 10 monocycl
  • R 4a is (C 6 -C 10 aryl)-C 1 -C 3 alkyl or (5- to 10-membered monocyclic heteroaryl)-C 1 -C 3 alkyl, optionally substituted with one or two substituents, each independently selected from the group consisting of halogen, C 1 -C 6 alkyl, haloalkyl, hydroxy, C 1 -C 3 alkoxy, C 3 -C 7 cycloalkyl, and 5- to 10-membered monocyclic, bicyclic fused, or spiro heterocyclyl. 36A.
  • R 4a is selected from the group consisting of cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, and bicyclo[1.1.1]pentan-1-yl, optionally substituted with one or two substituents, each independently selected from the group consisting of methyl, -CF 3 , fluoro, or hydroxy. 52C.
  • R 4a is selected from the group consisting of 49B.
  • R 4a is selected from the group consisting of 53C.
  • Step 2 [0312] Tert-butyl 3-[(4-methoxyphenyl)amino]piperidine-1-carboxylate (178 mg; 0.58 mmol; 1 eq.) was dissolved in DCM (5 ml) and cooled in an ice bath. Trifluoroacetic acid (2.55 mL) was added slowly and the reaction was stirred at 20 o C for 1 h. The reaction was evaporated, and the residue was co-evaporated with toluene to give 3-[(4-methoxyphenyl)amino]piperidin-1-ium trifluoroacetate, which was used directly in the next step.
  • Step 2 Into a 500-mL 3-round-bottom flask was placed ethyl 2-methyl-2-((tetrahydro-2H-pyran-2- yl)oxy)propanoate (15.0 g, 69.4 mmol, 1.00 equiv) in THF (150.00 mL).
  • N-(tert-butyl)-2-((2-(4-fluoropyridin-2-yl)-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4- yl)(methyl)amino)acetamide (4 g, 11.2 mmol, 1.00 equiv) was added at 0-5 o C.
  • the reaction mixture was stirred for 5 h at 50 o C. (The reaction was repeated in 2 batches).
  • the reaction mixture was cooled to room temperature, diluted with 150 mL of water, and extracted with 3x100 mL of ethyl acetate.
  • Scheme 20 depicts a synthetic route for preparing an exemplary compound.
  • Scheme 20 [0339] To a solution of 2- ⁇ methyl[2-(pyridin-2-yl)-5H,6H,7H-cyclopenta[d]pyrimidin-4- yl]amino ⁇ acetic acid (65.00 mg; 0.23 mmol; 1.00 eq.) in DMF (1.5 mL) was added 2-methoxyaniline (33.79 mg; 0.27 mmol; 1.20 eq.) followed by Hunig's base (0.08 mL; 0.46 mmol; 2.00 eq.), and HATU (86.93 mg; 0.23 mmol; 1.00 eq.).
  • Step 1 To a solution of 2,4-dichloro-6,7-dihydro-5H-cyclopenta[d]pyrimidine (500.00 mg; 2.64 mmol; 1.00 eq.) in AcCN (5 mL) was added DIPEA (1.15 mL; 6.61 mmol; 2.50 eq.) and ethyl 1- aminocyclopropane-1-carboxylate (409.93 mg; 3.17 mmol; 1.20 eq.). The mixture was heated at 60 °C for 24 h, and 80 °C for an additional 4 days (HPLC showed the conversion to be about 50%).
  • the crude product was purified by Prep-HPLC with the following conditions: Column, SunFire Prep C18 OBD Column, 19x150mm, 5um; mobile phase, phase A: H2O (0.1% FA); phase B: CH 3 CN (5% CH 3 CN up to 35% CH 3 CN in 10 min).
  • Step 3 Into a 25-mL round-bottom flask, was placed a solution of N-(tert-butyl)-2-((2-chloro-6,7- dihydro-5H-cyclopenta[d]pyrimidin-4-yl)(ethyl)amino)acetamide (150.00 mg, 0.331 mmol, 1.00 equiv) in MeOH (7 mL), pTSA (5.69 mg, 0.033 mmol, 0.1 equiv). The resulting solution was stirred for 12 hr at room temperature. The resulting mixture was concentrated.
  • Step 4 Into a 100-mL round-bottom flask was placed N-tert-butyl-2-([2-cyano-5H,6H,7H- cyclopenta[d]pyrimidin-4-yl](methyl)amino)acetamide (530 mg, 1.84 mmol, 1.00 equiv), DMF (6.0 mL), (NH4) 2 S (251 mg, 3.68 mmol, 2.00 equiv), and TEA (373 mg, 3.68 mmol, 2.00 equiv). The resulting solution was stirred for 0.5 h at room temperature.
  • Step 3 2,4-dichloro-6,7-dihydro-5H-cyclopenta[d]pyrimidine (420.00 mg; 2.22 mmol; 1.00 eq.) was dissolved in acetonitrile (7 ml), and to this was added (2R)-N-cyclohexyl-2-(methylamino)propanamide; trifluoroacetic acid (729.02 mg; 2.44 mmol; 1.10 eq.), and Hunig's base (1.93 mL; 11.11 mmol; 5.00 eq.).
  • Step 5 Into a 40-mL vial purged and maintained in an inert atmosphere of nitrogen was placed 4-(2- ((tetrahydro-2H-pyran-2-yl)oxy)ethyl)-2-(trimethylstannyl)pyridine (the reaction solution of last step), dioxane (10.0 mL), N-tert-butyl-2-([2-chloro-5H,6H,7H-cyclopenta[d]pyrimidin-4- yl](methyl)amino)acetamide (Intermediate II, 385 mg, 1.30 mmol, 0.6 equiv), and Pd(PPh3)4 (500 mg, 0.43 mmol, 0.2 equiv).
  • Step 2 2,4-dichloro-6,7-dihydro-5H-cyclopenta[d]pyrimidine (200.00 mg; 1.06 mmol; 1.00 eq.) was dissolved in acetonitrile (4 ml), and to this was added (2R)-2-amino-N-tert-butyl-3-methylbutanamide; trifluoroacetic acid (333.18 mg; 1.16 mmol; 1.10 eq.), and Hunig's base (0.92 mL; 5.29 mmol; 5.00 eq.).

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PCT/US2021/029574 2020-04-28 2021-04-28 Cycloalkyl pyrimidines as ferroportin inhibitors WO2021222363A1 (en)

Priority Applications (13)

Application Number Priority Date Filing Date Title
PE2022002516A PE20230845A1 (es) 2020-04-28 2021-04-28 Pirimidinas cicloalquiladas como inhibidores de la ferroportina
EP21726289.8A EP4143178A1 (en) 2020-04-28 2021-04-28 Cycloalkyl pyrimidines as ferroportin inhibitors
KR1020227041423A KR20230007441A (ko) 2020-04-28 2021-04-28 페로포르틴 억제제로서의 시클로알킬 피리미딘
BR112022021806A BR112022021806A2 (pt) 2020-04-28 2021-04-28 Cicloalquilpirimidinas como inibidores de ferroportina
IL297624A IL297624A (en) 2020-04-28 2021-04-28 Cycloalkyl pyrimidines as profortin inhibitors
CR20220556A CR20220556A (es) 2020-04-28 2021-04-28 Pirimidinas cicloalquiladas como inhibidores de la ferroportina
MX2022013518A MX2022013518A (es) 2020-04-28 2021-04-28 Pirimidinas cicloalquiladas como inhibidores de la ferroportina.
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