WO2018121476A1 - Single domain antibody which recognizes complex formed by hla-a2 molecule and nlvpmvatv short peptide - Google Patents
Single domain antibody which recognizes complex formed by hla-a2 molecule and nlvpmvatv short peptide Download PDFInfo
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- WO2018121476A1 WO2018121476A1 PCT/CN2017/118291 CN2017118291W WO2018121476A1 WO 2018121476 A1 WO2018121476 A1 WO 2018121476A1 CN 2017118291 W CN2017118291 W CN 2017118291W WO 2018121476 A1 WO2018121476 A1 WO 2018121476A1
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- amino acid
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- acid sequence
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Images
Classifications
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/08—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from viruses
- C07K16/081—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from viruses from DNA viruses
- C07K16/085—Herpetoviridae, e.g. pseudorabies virus, Epstein-Barr virus
- C07K16/088—Varicella-zoster virus
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/08—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from viruses
- C07K16/081—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from viruses from DNA viruses
- C07K16/085—Herpetoviridae, e.g. pseudorabies virus, Epstein-Barr virus
- C07K16/089—Cytomegalovirus
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
- C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
- C07K16/2803—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily
- C07K16/2833—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily against MHC-molecules, e.g. HLA-molecules
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/30—Immunoglobulins specific features characterized by aspects of specificity or valency
- C07K2317/31—Immunoglobulins specific features characterized by aspects of specificity or valency multispecific
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
- C07K2317/56—Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
- C07K2317/565—Complementarity determining region [CDR]
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
- C07K2317/56—Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
- C07K2317/569—Single domain, e.g. dAb, sdAb, VHH, VNAR or nanobody®
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
Definitions
- the invention belongs to the technical field of tumor immunotherapy, and particularly relates to a single domain antibody which recognizes a complex formed by an HLA-A2 molecule and a NLVPMVATV short peptide.
- Cytomegalovirus is a double-stranded DNA virus belonging to the herpesvirus family and has latent-activated biological properties. It can infect humans, cattle, horses, pigs and other mammals.
- the human CMV is called human cytomegalovirus (HCMV), and only HCMV infects humans.
- HCMV human cytomegalovirus
- the infection rate of HCMV population is above 50%, while in China, the infection rate of HCMV population is 70%-90%, and the infection rate of children is high.
- Epidemiological data show that about 30% to 70% of American preschool children Infected with HCMV. Congenital and perinatal infection with HCMV is the main cause of birth defects, mainly leading to liver damage.
- HCMV infection can also cause diseases such as the nervous system, genitourinary system, lung and blood system.
- HCMV infection will become a lifelong carrier of HCMV, presenting a state of recessive infection.
- the latent HCMV in the carrier does not have the ability to cause disease when the immune function of the body is normal.
- the carrier is immunosuppressed or defective, the HCMV in the body may induce certain tumors.
- the manifestations of brain developmental malformations caused by HCMV infection mainly include head deformity, intracranial calcification, hydrocephalus, brain atrophy, cerebral palsy, etc. Most of the symptoms appear in infancy, and CT manifestations include brain development abnormalities, brain softening, and medulla. Sheath retardation, hydrocephalus (including obstructive hydrocephalus and external hydrocephalus) and changes in brain atrophy.
- Neonatal mice have the highest infection rate, immature developmental brain is more susceptible to infection than mature brain, and the sensitivity of CMV in developing mice decreases with age. In the experiment, almost all cells in the brain slices of newly infected mice were infected.
- the infected cells in the 7-day-old brain slices had a tendency to concentrate in the subventricular zone and the subcortex, and 14 days after birth. Infected cells of 21d mouse brain slices were more distributed in the subventricular zone and less distributed in the subcortical layer. Although this phenomenon cannot be explained, it can be seen that this spatial difference in performance protects the cortex and white matter, delays the time of virus invasion, and reduces the irreversible damage of HCMV to the nervous system.
- the phase of the cell cycle in which the cell is infected is also closely related to the severity of the infection. This phase difference in cell cycle is the result of interactions between different cyclins and HCMV that act on each phase of the cell cycle.
- GCV valganciclovir
- foscarnet bacterofovir
- ganciclovir can be used in combination with gamma globulin to treat HCMV infection and enhance the efficacy.
- GCV is currently the most important therapeutic drug used clinically and is a derivative of acyclovir.
- GCV can only suppress viral infections and cannot completely eliminate the virus.
- Pp65 protein is the main component of viral particles and can be observed early in viral replication. It is also a strong antigen that stimulates the body's immune response and helps clear the virus.
- Pp65 495-503 (NLVPMVATV) is a T cell primary recognition peptide presented by HLA-A2.
- HLA-A2/Pp65 495-503 (NLVPMVATV) are abbreviated as HLA-A2/NLVPMVATV.
- Pp65 antigen has become a research hotspot in the research of tumor biotherapy. Especially as a dominant target for genetically modified TCR, CART, TCR-like antibodies.
- TCR can recognize both extracellular antigens and intracellular antigens that are presented to the cell surface by antigen processing
- TCR usually needs to isolate specific ⁇ TCR genes from T cell clones, which is difficult and reproducible.
- transgenic TCRs have potential safety hazards associated with TCR mismatches, and the two strands of exogenous TCR may be mismatched with endogenous TCR subunits to form a new TCR. This mismatched TCR creates an unknown specificity that may target normal tissues, resulting in a severe graft-versus-host response.
- T cell immunity and mature antibody technology can be combined to develop a novel T cell modification treatment that combines the advantages of antibodies and T cells. technology.
- the novel MHC polypeptide complex recognizes the tumor extracellular antigen and recognizes the antigen through the self-heterologous recognition mechanism obtained during the evolution of life.
- the single domain antibody recognizing HLA-A2/NLVPMVATV provided by the present invention comprises a complementarity determining region CDR1, a complementarity determining region CDR2 and a complementarity determining region CDR3, and the single domain antibody is as follows (a) or (b):
- the complementarity determining region CDR1 of the single domain antibody is as follows (a1) or (a2) or (a3):
- the complementarity determining region CDR2 of the single domain antibody is as follows (a4) or (a5) or (a6):
- the complementarity determining region CDR3 of the single domain antibody is as follows (a7) or (a8) or (a9):
- the complementarity determining region CDR1 of the single domain antibody is as follows (b1) or (b2) or (b3):
- the complementarity determining region CDR2 of the single domain antibody is as follows (b4) or (b5) or (b6):
- the complementarity determining region CDR3 of the single domain antibody is as follows (b7) or (b8) or (a9):
- the single domain antibody is as follows (c1) or (c2):
- Another object of the present invention is to provide a derivative of the above single domain antibody.
- the derivative provided by the present invention is any of the following (d1) to (d9):
- the fusion protein is obtained by directly fusing the above single domain antibody with at least one polypeptide molecule having therapeutic or recognition function, or by a linker peptide and one or more therapeutic or recognition functions.
- the polypeptide molecules are linked together.
- the polypeptide molecule having a therapeutic or recognition function is a human Fc protein.
- the fusion protein is an Fc fusion protein obtained by fusing the above single domain antibody with a human Fc protein.
- the single domain antibody is fused to the human Fc protein, the monovalent antibody becomes a bivalent antibody, and the affinity is improved.
- the specific preparation method of the Fc fusion protein comprises the steps of: introducing the coding gene of the single domain antibody and the coding gene of the human Fc protein into a host cell to obtain a recombinant cell; and culturing the recombinant cell to obtain the fusion protein.
- the coding gene of the single domain antibody and the coding gene of the human Fc protein are introduced into a host cell by a recombinant vector;
- the recombinant vector is obtained by inserting a gene encoding the single domain antibody and a fragment encoding the human Fc protein into a multiple cloning site of an expression vector.
- the gene encoding the single domain antibody and the gene encoding the human Fc protein are the DNA molecules shown in SEQ ID No. 11.
- the expression vector may be pcDNA3.1; the host cell may be a 293F cell.
- the composition may be a pharmaceutical composition containing a pharmaceutically acceptable carrier.
- the pharmaceutical compositions of the invention may be administered in combination therapy, i.e., in combination with other agents.
- pharmaceutically acceptable carrier includes any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like which are physiologically compatible.
- the carrier is suitable for intravenous, intramuscular, subcutaneous, parenteral, spinal or epidermal administration (e.g., by injection or infusion).
- the active compound ie, an antibody, immunoconjugate or bispecific molecule or multispecific molecule
- the active compound can be coated in a material to protect the compound from acids and other natural compounds that can inactivate the compound.
- the role of the condition ie, an antibody, immunoconjugate or bispecific molecule or multispecific molecule.
- compositions of the invention may comprise one or more pharmaceutically acceptable salts.
- pharmaceutically acceptable salt refers to a salt which retains the desired biological activity of the parent compound and does not cause any unwanted toxicological effects. Examples of such salts include acid addition salts and base addition salts. Acid addition salts include those derived from non-toxic inorganic acids such as hydrochloric acid, nitric acid, phosphoric acid, sulfuric acid, hydrobromic acid, hydroiodic acid, phosphorous acid, and the like, as well as non-toxic organic acids such as aliphatic monocarboxylic acids and dicarboxylic acids.
- Base addition salts include those derived from alkaline earth metals such as sodium, potassium, magnesium, calcium, and the like, as well as non-toxic organic amines such as N,N'-dibenzylethylenediamine, N-methylglucamine, chlorine Salt derived from procaine, choline, diethanolamine, ethylenediamine, procaine, and the like.
- compositions of the invention may also contain a pharmaceutically acceptable antioxidant.
- pharmaceutically acceptable antioxidants include: (1) water-soluble antioxidants such as ascorbic acid, cysteine hydrochloride, sodium hydrogen sulfate, sodium metabisulfite, sodium sulfite, etc.; (2) oil-soluble antioxidants such as ascorbic acid palmitate Ester, butylated hydroxyanisole (BHA), butylated hydroxytoluene (DHT), lecithin, propyl gallate, alpha-tocopherol, etc.; (3) metal chelating agents such as citric acid, ethylenediaminetetraacetic acid (EDTA) , sorbitol, tartaric acid, phosphoric acid, etc.
- water-soluble antioxidants such as ascorbic acid, cysteine hydrochloride, sodium hydrogen sulfate, sodium metabisulfite, sodium sulfite, etc.
- oil-soluble antioxidants such as ascorbic acid palmitate Ester, butylated hydroxyani
- aqueous or nonaqueous vehicles examples include water, ethanol, polyols (e.g., glycerol, propylene glycol, polyethylene glycol, and the like), and suitable mixtures thereof, vegetable oils such as olive oil, And injectable organic esters such as ethyl oleate.
- polyols e.g., glycerol, propylene glycol, polyethylene glycol, and the like
- vegetable oils such as olive oil
- injectable organic esters such as ethyl oleate.
- Proper fluidity can be maintained, for example, by the application of coating materials such as lecithin, by the maintenance of the required particle size in the case of dispersions, and by the use of surfactants.
- compositions may also contain adjuvants such as preservatives, wetting agents, emulsifying agents and dispersing agents. Prevention of the presence of microorganisms can be ensured by a sterilization procedure or by the inclusion of various antibacterial and antifungal agents such as parabens, chlorobutanol, phenol sorbic acid, and the like.
- compositions of the invention may be administered by one or more routes of administration using one or more methods well known in the art. Those skilled in the art will appreciate that the route and/or manner of administration will vary depending on the desired result.
- compositions of the invention have therapeutic applications in vitro and in vivo.
- these molecules can be administered to cells cultured in vitro or ex vivo, or administered to a human subject in vivo to treat, prevent or diagnose a variety of diseases.
- subject as used herein includes both human and non-human animals.
- Non-human animals include all vertebrates, such as mammals and non-mammals, such as non-human primates, sheep, dogs, cats, cows, horses, chickens, amphibians, and reptiles.
- the immunoconjugate may be a conjugate obtained by coupling the above single domain antibody with a therapeutic agent such as a cytotoxin, a drug (for example, an immunosuppressive agent) or a radioactive toxin.
- a therapeutic agent such as a cytotoxin, a drug (for example, an immunosuppressive agent) or a radioactive toxin.
- conjugates are referred to as "immunoconjugates.”
- An immunoconjugate comprising one or more cytotoxins is referred to as an "immunotoxin.”
- Cytotoxins or cytotoxic agents include any agent that is detrimental to the cell (eg, kills).
- Examples include paclitaxel, cytochalasin B, gramicidin D, ethidium bromide, ipecaine, mitomycin, epipodophyllotoxin, epipodophyllotoxin, vincristine, vinblastine , colchicine, doxorubicin, daunorubicin, dihydroxy anthrax dione, mitoxantrone, phosfomycin, actinomycin D, l-dehydrotestosterone, glucocorticoid, proca , tetracaine, lidocaine, propranolol and puromycin and their analogs or homologs.
- Therapeutic agents also include, for example, antimetabolites (eg, methotrexate, 6-mercaptopurine, 6-thioguanine, cytarabine, 5-fluorouracil, decarbazine, a burning agent ( For example, nitrogen mustard, thioepa chlorambucil, phenylalanine mustard, carmustine (BSNU) and lomustine (CCNU), cyclophosphamide, busulfan, dibromomannitol, chain Oxazomycin, mitomycin C and cis-dichlorodiamine platinum (II) (DDP) cisplatin, anthracyclines (eg, daunorubicin (formerly known as daunorubicin) and trichothecene , antibiotics (eg, actinomycin D, bleomycin, phosfomycin, and amphotericin (AMC)), and anti-mitotic agents (eg, vincristine and vinblastine).
- antimetabolites e
- antibody-conjugated therapeutic cytotoxins include doxorubicin, calicheamicin, maytansin, auristatin, and derivatives thereof. Coupling of a cytotoxin with an antibody of the invention can be utilized in the art. Joint technology.
- the antibodies of the invention may also be conjugated to a radioisotope to produce a cytotoxic radiopharmaceutical, also known as a radioimmunoconjugate.
- a radioisotope that can be coupled to antibodies for diagnostic or therapeutic use include, but are not limited to, iodine 131 , indium 111 , ⁇ 90, and ⁇ 177 .
- Methods of preparing radioactive immunoconjugates have been established in the art. Examples of radioimmunoconjugates are commercially available, including Zevalin (TM) (IDEC Pharmaceuticals) and Bexxar (TM) (Corixa Pharmaceuticals), which are capable of producing radioimmunoconjugates using similar methods using the antibodies of the invention.
- the antibody conjugates of the invention can be used to modify a particular biological response, and the drug moiety should not be construed as being limited to classical chemotherapeutic agents.
- the drug moiety can be a protein or polypeptide having the desired biological activity.
- Such proteins may include, for example, enzymatically active toxins or active fragments thereof, such as abrin, ricin A, Pseudomonas exotoxin or diphtheria toxin; proteins such as tumor necrosis factor or interferon- ⁇ ; or biological response regulators such as lymphokines, interleukin-1 (IL-1), interleukin-2 (IL-2), interleukin-6 (IL-6), granulocyte macrophages Cell colony stimulating factor (GM-CSF), granulocyte colony stimulating factor (G-CSF) or other growth factors.
- IL-1 interleukin-1
- IL-2 interleukin-2
- IL-6 interleukin-6
- GM-CSF granulocyte macrophages Cell colony stimulating factor
- G-CSF granulocyte colony stimulating factor
- the antibody genetically engineered antibody obtained by modifying and/or modifying the above single domain antibody or antigen binding portion thereof is also within the scope of the present invention.
- the single domain antibodies provided herein comprise CDR1, CDR2 and CDR3 sequences, wherein one or more of these CDR sequences comprise a specific amino acid sequence based on a single domain antibody of the invention or a conservative modification thereof, and wherein the antibody retains an antibody of the invention It has the functional characteristics of identifying and/or combining HLA-A2/NLVPMVATV.
- conservative sequence modification refers to an amino acid modification that does not significantly affect or alter the binding characteristics of an antibody comprising the amino acid sequence. Such conservative modifications include amino acid substitutions, additions and deletions.
- Modifications can be introduced into the antibodies of the invention by techniques well known in the art, such as site-directed mutagenesis and PCR-mediated mutagenesis.
- Conservative amino acid substitution refers to the replacement of an amino acid residue with an amino acid residue having a similar side chain.
- a family of amino acid residues having similar side chains has been defined in the art.
- These families include: basic side chains (eg, lysine, arginine, histidine), acidic side chains (eg, aspartic acid, glutamic acid), uncharged polar side chains (eg, glycine, Asparagine, glutamine, serine, threonine, tyrosine, cysteine, tryptophan), non-polar side chains (eg alanine, valine, leucine, isoleucine) Acid, proline, phenylalanine, methionine), ⁇ -branched side chains (eg threonine, valine, isoleucine) and aromatic side chains (eg tyrosine, styrene Amino acids of amino acids, tryptophan, histidine).
- basic side chains eg, lysine, arginine, histidine
- acidic side chains eg, aspartic acid, glutamic acid
- uncharged polar side chains eg, glycine,
- one or more amino acid residues within the CDR regions of an antibody of the invention can be substituted for other amino acid residues from the same side chain family, and the above-described functions of altered antibody retention can be detected using the in vitro affinity assays described herein.
- CDR grafting One type of variable region engineering that can be performed is CDR grafting.
- the antibody interacts with the target antigen primarily through amino acid residues located in the complementarity determining regions (CDRs). For this reason, the amino acid sequences within the CDRs are more diverse between the individual antibodies than the sequences outside the CDRs. Since the CDR sequences are responsible for most antibody-antigen interactions, recombinant antibodies that mimic the properties of the particular antibody present can be expressed by constructing an expression vector comprising a CDR sequence from a particular antibody present, which is grafted to From the backbone sequences of different antibodies with different properties, these backbone sequences can be obtained from public DNA databases or published references.
- variable region modification is to mutate the amino acid sequence within the CDR1, CDR2 and/or CDR3 regions to improve one or more binding properties (e.g., affinity) of the antibody of interest.
- Site-directed mutagenesis or PCR-mediated mutagenesis can be performed to introduce mutations, effects on antibody binding, or other target functional properties, which can be evaluated using the assays described herein and provided in the Examples.
- Conservative sequence modifications are preferably introduced.
- the mutation may be an amino acid substitution, addition or deletion, but is preferably substituted. Moreover, typically no more than 5 residues are altered within the CDR regions.
- Engineered antibodies of the invention include, for example, antibodies whose backbone residues have been modified to improve the properties of the antibody. Such backbone modifications are generally made to reduce the immunogenicity of the antibody.
- the backbone modification involves mutating one or more residues within the framework region, or even one or more CDR regions, to remove T cell epitopes, thereby reducing the potential immunogenicity of the antibody.
- the framework region is positions 1-26, 36-49, 56-97, 111-121 of SEQ ID No. 7, or positions 1-26 of SEQ ID No. 8. , 36-49, 56-97, 115-125.
- the term "homology" as used herein may describe the degree of similarity between two or more amino acid sequences, and the percentage of homology between the first amino acid sequence and the second amino acid sequence may be determined by the formula: (first amino acid The number of amino acid residues in the sequence that is identical to the amino acid sequence at the corresponding position in the second amino acid sequence) / (total number of amino acids in the first amino acid sequence) * 100%, wherein the second amino acid sequence can only be Deletions, insertions, substitutions or additions of amino acids (compared to the first amino acid) are considered to be different.
- the percent homology can also be obtained using known computer algorithms for sequence matching such as NCBI Blast.
- the present invention also provides a biological material related to the above single domain antibody or the above derivative.
- the biomaterial provided by the present invention is any one of the following (e1) to (e4):
- (e3) a vector comprising the nucleic acid molecule of (e1) or (e2);
- (e4) A host cell comprising the nucleic acid molecule of (e1) or (e2) or the vector of (e3).
- the nucleic acid molecule is any one of the following (f1) to (f3):
- (f2) a DNA molecule having 75% or more of the identity of the nucleotide sequence defined by (f1) and encoding the above single domain antibody or fusion protein;
- (f3) a DNA molecule which hybridizes under stringent conditions to a nucleotide sequence defined by (f1) or (f2) and which encodes the above single domain antibody or fusion protein.
- the nucleic acid molecule may be a nucleotide sequence encoding each complementarity determining region or a single domain antibody or a fusion protein amino acid sequence, and the specific sequence of the corresponding nucleic acid molecule can be obtained at any time by the genetic code. Due to the annexation of the genetic code, the nucleic acid molecule can be varied for different application purposes.
- nucleic acid molecules of the invention can be obtained using conventional molecular biology techniques.
- nucleic acids encoding antibodies can be obtained from libraries.
- the nucleic acid sequence or at least part of the sequence in the vector can be expressed by a suitable expression system to obtain a corresponding protein or polypeptide;
- the expression system includes bacteria, yeast, filamentous fungus, lactation Animal cells, insect cells, plant cells or cell-free expression systems.
- the present invention also provides the novel use of the above single domain antibody or the above derivative or the above biological material.
- the present invention provides the use of the above single domain antibody or the above derivative or the above biological material in any of the following (g1) to (g4):
- (g4) A product for treating a disease caused by cytomegalovirus.
- the product is a drug.
- diseases caused by cytomegalovirus which can be treated with the antibody of the present invention include, but are not limited to, interstitial pneumonia caused by cytomegalovirus, hepatitis, gastroenteritis or retinitis.
- the T cells can be modified in vitro by using the antibody or fusion protein of the present invention to obtain T cells after arming, and the T cells are amplified after being armed, and then returned to the subject, and the armed T cells can be specific. Identify cells infected with cytomegalovirus for the treatment of diseases caused by cytomegalovirus in vivo. Modification of T cells can be achieved by conventional methods well known to those skilled in the art.
- the HLA-A2/NLVPMVATV of the present invention is an HLA-A2/NLVPMVATV antigen complex, which is a complex of the cytomegalovirus antigen peptide NLVPMVATV and the antigen molecule HLA-A2.
- the HLA-A2/NLVPMVATV antibody referred to in this patent is a single domain antibody.
- a single domain antibody differs from SCFV in that it contains only one variable region of the antibody heavy chain, approximately half the size of SCFV, and is the smallest fully functional antigen-binding fragment with weak immunogenicity; easier to penetrate through the vessel wall Solid tumors are beneficial to the treatment of tumors.
- Single domain antibodies against HLA-A2/NLVPMVATV have not been reported.
- the present invention is directed to the technical problems existing in the prior art, and the antibodies with higher affinity are screened from the phage single domain library by three rounds of biological panning, and the obtained antibodies are cloned into a prokaryotic/eukaryotic expression vector, and the human The Fc fusion gene is expressed, transfected into a host cell, and an Fc fusion protein is obtained.
- Verification of in vitro affinity The single domain antibody and Fc fusion protein provided by the invention can specifically recognize and bind HLA-A2/NLVPMVATV (cytomegalovirus antigen) antigen complex, and can be developed into antibody drugs for treating tumors and other Beneficial effects Biotherapeutic products are of great importance for the treatment of diseases caused by cytomegalovirus.
- Figure 1 is a diagram showing the first panel ELISA detection and data analysis after three rounds of panning in the present invention.
- A is the ELISA all the pore coated antigen HLA-A2/NLVPMVATV;
- B is the data analysis chart, the ordinate is the light absorption value of each hole at 650nm, the abscissa is 96 holes, of which, 1-8 is A1, B1 , C1, D1, E1, F1, G1, H1, 9-16 are A2, B2, C2, D2, E2, F2, G2, H2, and so on, 89-96 is A12, B12, C12, D12, E12, F12, G12, H12.
- A is the ELISA all the pore coated antigen HLA-A2/NLVPMVATV;
- B is the data analysis chart, the ordinate is the light absorption value of each hole at 650nm, the abscissa is 96 holes, of which, 1-8 is A1, B1 , C1, D1, E1, F1, G1, H1, 9-16 are A2, B2, C2, D2, E2, F2, G2, H2, and so on, 89-96 is A12, B12, C12, D12, E12, F12, G12, H12.
- FIG. 3 is a diagram showing the specificity detection and data analysis of two different single domain antibodies for different antigens in the present invention.
- A is the ELISA plate A and B coated antigen HLA-A2/ITDQVPFSV, C, D two lines coated antigen HLA-A2/NLVPMVATV, E, F two lines coated antigen HLA-A2/RMFPNAPYL, G, The H line is coated with the antigen HLA-A2/SLLMWITQC; the first antibody added to Line 1 is M4-F4, and the line 2 is the positive control; the line3 is an antibody MA that cross-reacts to the four antigens; the line 4 is M4-G5.
- B is a data analysis chart with ordinates at 650 nm, abscissa 1, 2, 3, 4 for HLA-A2/ITDQVPFSV antigen, HLA-A2/NLVPMVATV antigen, HLA-A2/RMFPNAPYL antigen, HLA- A2/SLLMWITQC antigen.
- a, b, c, d are M4-F4, M5 control 1, MA control 2, M4-G5.
- Figure 4 is a schematic representation of a plasmid map of a single domain antibody fused to Fc in pcDNA3.1 of the present invention.
- the single domain antibody was introduced into the BamHI restriction site, and the single domain antibody was ligated with HindIII restriction enzyme, and the Fc was digested with XbaI.
- the single domain antibody is preceded by a signal peptide and a kozak sequence.
- Figure 5 is a SDS-PAGE of the fusion protein M4-G5-Fc of pcDNA3.1 expression in the present invention. Marker's strips are from 14, 25, 30, 40, 50, 70, 100, 120, 160 KD. Line 1 is a reduced form M4-G5-Fc and Line 2 is a non-reduced M4-G5-Fc.
- Figure 6 is a specific detection and data analysis of different antigens of the fusion protein M4-G5-Fc in the present invention.
- the ordinate is the light absorption at 650 nm, and the abscissa 1, 2, 3, 4 is the HLA-A2/ITDQVPFSV antigen, HLA-A2/NLVPMVATV antigen, HLA-A2/RMFPNAPYL antigen, HLA-A2/SLLMWITQC antigen.
- the sample was M4-G5-Fc, MB control.
- the HLA-A2/NLVPMVATV antigen complex in the following examples refers to a complex of the cytomegalovirus antigen peptide NLVPMVATV and the antigen molecule HLA-A2, which is described in the literature "Stephen J. Forman etc, Development of a Candidate HLA A*0201 Restricted Peptide-Based Vaccine against Human Cytomegalovirus Infection, Blood, Vol 90, No 5 (September 1), 1997: pp 1751-1767" and "Epitope Sequence Presented by the HLA Ap0201 Allele among Human Cytomegalovirus Isolates; Journal of Virology, Mar. 2001, p.2472–2474”, the public is available from Tianjin Tianrui Biotechnology Co., Ltd.
- M13KE phage purchased from NEB#N0316S
- AlwnI purchased from NEB
- AfeI purchased from NEB
- the synthetic gene fragment was also digested with AlwnI and AfeI (purchased from NEB). They are then ligated together using T4 ligase. After ligation, TG1 was transfected to obtain helper phage BM13.
- the synthetic gene sequences are as follows: CCA GCC GGC CTT TCT GAG GGG TCG ACT ATA GAA GGA CGA GGG GCC CAC GAA GGA GGT GGG GTA CCC GGT TCC GAG GGT.
- pUC19 (purchased from NEB) was digested with HindIII (purchased from NEB) and NdeI (purchased from NEB), and a heavy chain artificial single domain antibody sequence based on the DP47 antibody sequence was added.
- the single domain antibody expression framework the single domain antibody is fused to the GIII protein, and the Myc and VSV-G tags are added in the middle for purification or identification, and the phage display vector pBG3 is constructed.
- E. coli strain CJ236 (purchased from NEB) lacks functional uracil deoxyribonucleoside triphosphatase and uracil-N glycosidase to produce a uracilized single-stranded DNA template.
- the pBG3 plasmid was transfected into CJ236 and plated on agar plate containing Carbenicillin (50 ⁇ g/ml) and chloramphenicol (15 ⁇ g/ml) and cultured overnight. A single colony screened on the plate was selected into 3 ml of 2 ⁇ TY broth medium (containing the same concentration of the above-mentioned double antibody), and cultured at 37 ° C, 250 rpm overnight.
- the phage-containing supernatant was precipitated with 5% PEG (PEG800 and 300 mM NaCl adjusted to a concentration of 5%), then resuspended in PBS, and ssDNA was prepared using QIAprep Spin M13 kit (purchased from Qiagen).
- the synthetic oligonucleotide strand was added to 100 ul of 50 mM Tris-HCl (Tris base was purchased from Soleil, adjusted to pH 7.5 with hydrochloric acid) to obtain a phosphorylation system containing the following components: 5 U T4 multinuclear Glycokinase, 10 mM MgCl 2 , 1 mM ATP and 5 mM DTT. After the phosphorylation system was reacted at 37 ° C for 1 hour, a phosphorylated oligonucleotide was obtained. The phosphorylated oligonucleotide strand was purified using a PCR purification kit (purchased from Tiangen).
- phosphorylated oligonucleotide and Uracilated ssDNA were dissolved in 50 mM Tris-HCl buffer (pH of 10 mM MgCl 2 ) . In 7.5), after heating at 90 ° C for 2 minutes, the temperature was lowered to 25 ° C at a rate of 1 ° C / min to obtain an annealing-bound phosphorylated oligonucleotide and ssDNA complex.
- dsDNA was obtained.
- the dsDNA was purified using Qiaquick PCR Purification Kit (purchased from Qiagen). The purified DNA was transformed into electrotransformed competent TG1.
- a fresh single colony of Escherichia coli TG1 (purchased from Wuhan Qiling) was picked from the basic agar medium plate, inoculated into 20 ml of 2 ⁇ TY medium, and gently shaken, and cultured at 37 ° C until the OD600 was about 0.8.
- a well-separated single phage was selected and inoculated into a 15 ml culture tube containing 2 to 3 ml of 2 x TY medium containing 25 ⁇ g/ml kanamycin. Incubate at 37 ° C, 250 rpm for 12 to 16 h. The infected supernatant was transferred to a 1.5 ml sterile microcentrifuge tube and centrifuged at 4 ° C for 2 min at maximum speed on a microfuge. The supernatant was transferred to a new tube and stored at 4 °C.
- the prepared phage library was inoculated into 100ml containing 60 ⁇ g / ml ampicillin, at 37 °C, 250rpm shaking culture conditions to an OD600 of 0.8, BM13 was added to a concentration of 2 ⁇ 10 7 pfu / ml .
- Incubate at 37 ° C, 300 rpm for 1 h, add 25 ⁇ g / ml kanamycin, continue to culture at 37 ° C for 14 ⁇ 18h.
- the bacterial solution was centrifuged, and the supernatant was precipitated with 5% PEG, and then resuspended in 5% MPBS for use.
- streptavidin immunomagnetic beads purchased from Invitrogen cat no. SKU #112-05D
- a quantity of biotinylated HLA-A2/NLVPMVATV for 5 min at room temperature. Wash PBST and PBS 2 or 3 times. MPBS was blocked for 2 h, washed with PBST and PBS for 2 to 3 times. The phage library was added to the magnetic beads and incubated for 2 h at room temperature.
- Single colonies obtained after three rounds of panning were picked into 96-well plates.
- the culture supernatant was prepared according to the 1.2 Chinese library proliferation method.
- the specific steps of the ELISA are as follows: dilute the known antigen to 1 to 10 ⁇ g/ml with a coating buffer, add 0.1 ml per well, overnight at 4 ° C; wash 3 times a day; add 0.1 ml of the sample to be tested to the above In the coated reaction well, incubate at 37 ° C for 1 hour, wash; add freshly diluted enzyme-labeled secondary antibody (horseradish peroxidase HRP-labeled anti-phage antibody, 1:5000) 0.1 ml, incubate at 37 ° C Wash for 60 minutes; wash with DDW for the last time. 0.1 ml of a temporarily prepared TMB substrate solution was added to each reaction well, and allowed to stand at 37 ° C for 10 to 30 minutes. The plate was read at a wavelength of 650 nm using an advanced plate reader.
- Clones with A650nm above 0.8 in Figures 1 and 2 were selected for sequencing to obtain a plurality of different amino acid sequences.
- the clone corresponding to the amino acid sequence shown in SEQ ID No. 7 was named M4-F4, and the corresponding single domain antibody was a single domain antibody M4-F4;
- the clone corresponding to the amino acid sequence shown in SEQ ID No. 8 was named M4-G5, the corresponding single domain antibody is a single domain antibody M4-G5.
- the amino acid sequence of the single domain antibody M4-F4 is shown in SEQ ID No. 7, and the coding gene sequence is shown in SEQ ID No. 9.
- the amino acid sequence of the CDR1 of the complementarity determining region of the single domain antibody M4-F4 is as shown in SEQ ID No. 1
- the amino acid sequence of the CDR2 of the complementarity determining region is as shown in SEQ ID No. 2
- the amino acid sequence of the CDR3 of the complementarity determining region is SEQ. ID No.3 is shown.
- the amino acid sequence of the single domain antibody M4-G5 is shown in SEQ ID No. 8, and the coding gene sequence is shown in SEQ ID No. 10.
- the amino acid sequence of the complementarity determining region CDR1 is set forth in SEQ ID No. 4
- the amino acid sequence of the complementarity determining region CDR2 is set forth in SEQ ID No. 5
- the amino acid sequence of the complementarity determining region CDR3 is set forth in SEQ ID No. 6.
- the two rows of ELISA plate A and B were coated with antigen HLA-A2/ITDQVPFSV, C and D were coated with antigen HLA-A2/NLVPMVATV, and E and F were coated with antigen HLA-A2/RMFPNAPYL.
- the two lines of G and H were coated with the antigen HLA-A2/SLLMWITQC; the single domain antibody added to each well was added as a culture supernatant.
- the first antibody in the eight wells of Line 1 was M4-F4
- the line 2 was the antibody of HLA-A2/RMFPNAPYL
- the line 3 was one for the four antigens.
- the reacted antibody MA (MA control 2); line 4 is M4-G5.
- Each antibody has two replicate wells for the affinity detection reaction of one antigen.
- Figure 3B shows the data analysis. The ordinate is the absorbance at 650 nm. The graph shows that A650 is the average of two replicate wells.
- the abscissas 1, 2, 3 and 4 are HLA-A2/ITDQVPFSV antigen, HLA-A2. /NLVPMVATV antigen, HLA-A2/RMFPNAPYL antigen and HLA-A2/SLLMWITQC antigen.
- a, b, c, d are in turn M4-F4, M5 control 1, MA control 2 and M4-G5.
- the recombinant vector pcDNA3.1-sdAb-Fc was transiently transfected into 293F cells (ThermoFiherer, A14527), cultured for 4 days, centrifuged, and the supernatant was collected and purified with Protein A.
- the M4-G5-Fc fusion protein was purified and ran SDS-PAG. The results are shown in Fig. 5.
- 5A is a reduced electrophoresis pattern of the fusion protein M4-G5-Fc
- FIG. 5B is a non-reduced electrophoresis pattern of the fusion protein M4-G5-Fc. Marker's strips are from 14, 25, 30, 40, 50, 70, 100, 120, 160 KD.
- Line 1 is a reduced state M4-G5-Fc, approximately 43 KD
- Line 2 is a non-reduced M4-G5-Fc, approximately 100 KD.
- the specific binding of the fusion protein M4-G5-Fc to different antigens was detected by ELISA.
- the detection method is the same as 1.3.2 in Example 1.
- the ordinate has a light absorption value at 650 nm
- the abscissas 1, 2, 3 and 4 are HLA-A2/ITDQVPFSV antigen, HLA-A2/NLVPMVATV antigen, HLA-A2/RMFPNAPYL antigen and HLA-A2/SLLMWITQC antigen, respectively.
- the sample was a purified fusion protein M4-G5-Fc
- BM was an antibody of HLA-A2/RMFPNAPYL as a positive control.
- the results showed that the fusion protein M4-G5-Fc showed higher affinity for HLA-A2/NLVPMVATV and did not bind to the other three antigens.
- the present invention provides a single domain antibody that specifically recognizes the HLA-A2/NLVPMVATV complex and its CDR1, CDR2 and CDR3 amino acid sequences for specific recognition.
- the present invention is also based on the provision of a fusion protein that specifically recognizes the HLA-A2/NLVPMVATV complex and its use in the biomedical field.
- the single domain antibody screened by the present invention can be developed into an antibody drug and other beneficial products for treating cytomegalovirus, and is important for treating diseases caused by cytomegalovirus.
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Abstract
Provided is a single domain antibody which recognizes an HLA-A2/NLVPMVATV complex. Further provided on the basis of said antibody is a fusion protein which may specifically recognize an HLA-A2/NLVPMVATV complex and an application in the biomedical field.
Description
本发明属于肿瘤免疫治疗技术领域,具体涉及一种识别HLA-A2分子与NLVPMVATV短肽形成的复合物的单域抗体。The invention belongs to the technical field of tumor immunotherapy, and particularly relates to a single domain antibody which recognizes a complex formed by an HLA-A2 molecule and a NLVPMVATV short peptide.
巨细胞病毒(cytomegalovirus,CMV)为双链DNA病毒,属疱疹病毒科,具有潜伏-活化的生物学特性。它可感染人、牛、马、猪等多种哺乳动物,其中感染人类的CMV称为人巨细胞病毒(human cytomegalovirus,HCMV),且只有HCMV感染人类。在发达国家HCMV人群感染率在50%以上,而在我国HCMV人群感染率则为70%~90%,儿童感染率较高,流行病学资料显示,大约有30%~70%美国学龄前儿童感染HCMV。先天性及围产期感染HCMV是出生缺陷的主要病毒病因,主要导致肝脏损伤,严重时可伴肝功能衰竭,并发凝血功能异常,可引起胆道闭锁,甚至危及患儿生命。此外,HCMV感染还能导致神经系统、泌尿生殖系统、肺以及血液系统等病变。Cytomegalovirus (CMV) is a double-stranded DNA virus belonging to the herpesvirus family and has latent-activated biological properties. It can infect humans, cattle, horses, pigs and other mammals. The human CMV is called human cytomegalovirus (HCMV), and only HCMV infects humans. In developed countries, the infection rate of HCMV population is above 50%, while in China, the infection rate of HCMV population is 70%-90%, and the infection rate of children is high. Epidemiological data show that about 30% to 70% of American preschool children Infected with HCMV. Congenital and perinatal infection with HCMV is the main cause of birth defects, mainly leading to liver damage. In severe cases, it may be associated with liver failure, and abnormal coagulation function, which may cause biliary atresia and even endanger the life of the child. In addition, HCMV infection can also cause diseases such as the nervous system, genitourinary system, lung and blood system.
目前认为在正常的易感人群中,感染HCMV后将成为HCMV的终生携带者,呈现为隐性感染的状态。而携带者体内潜伏的HCMV在机体免疫功能处于正常状态时是不具备致病能力的,当携带者处于免疫抑制或者缺陷的时候,体内潜伏的HCMV将可能诱发某些肿瘤。It is currently believed that in a normal susceptible population, HCMV infection will become a lifelong carrier of HCMV, presenting a state of recessive infection. The latent HCMV in the carrier does not have the ability to cause disease when the immune function of the body is normal. When the carrier is immunosuppressed or defective, the HCMV in the body may induce certain tumors.
HCMV感染所致的脑发育畸形表现主要包括头畸形、颅内钙化、脑积水、脑萎缩、脑瘫等,多数在婴儿期即出现明显的症状,CT表现类型包括脑发育异常、脑软化、髓鞘发育迟缓、脑积水(包括梗阻性脑积水和外部性脑积水)和脑萎缩改变等。新生小鼠的感染率最高,未成熟的发育期大脑较成熟大脑更易被感染,且在发育期的小鼠对CMV的敏感性也随着年龄的增长而下降。实验中发现,刚出生即被感染的小鼠脑片中几乎所有细胞都被感染,出生7d的脑片中被感染的细胞有向室管膜下区及皮层下层集中的趋势,而生后14d、21d小鼠脑片被感染的细胞更多分布于室管膜下区,在皮层下层分布较少。虽然还不能解释这种现象,但从中可知,这种空间上的差异性能保护皮层及白质,延迟其遭受病毒侵袭的时间,降低HCMV对神经系统的不可逆损伤。感染发生时细胞所处细胞周期的时相也与感染严重程度密切相关。这种细胞周期时相上的区别是由于细胞周期各时相上发挥作用的不同细胞周期蛋白与HCMV相互作用的结果。The manifestations of brain developmental malformations caused by HCMV infection mainly include head deformity, intracranial calcification, hydrocephalus, brain atrophy, cerebral palsy, etc. Most of the symptoms appear in infancy, and CT manifestations include brain development abnormalities, brain softening, and medulla. Sheath retardation, hydrocephalus (including obstructive hydrocephalus and external hydrocephalus) and changes in brain atrophy. Neonatal mice have the highest infection rate, immature developmental brain is more susceptible to infection than mature brain, and the sensitivity of CMV in developing mice decreases with age. In the experiment, almost all cells in the brain slices of newly infected mice were infected. The infected cells in the 7-day-old brain slices had a tendency to concentrate in the subventricular zone and the subcortex, and 14 days after birth. Infected cells of 21d mouse brain slices were more distributed in the subventricular zone and less distributed in the subcortical layer. Although this phenomenon cannot be explained, it can be seen that this spatial difference in performance protects the cortex and white matter, delays the time of virus invasion, and reduces the irreversible damage of HCMV to the nervous system. The phase of the cell cycle in which the cell is infected is also closely related to the severity of the infection. This phase difference in cell cycle is the result of interactions between different cyclins and HCMV that act on each phase of the cell cycle.
迄今,HCMV感染尚无特效治疗药物。临床上抗病毒疗法中的药物为GCV、缬更昔洛韦、膦甲酸、西多福韦,还可以将更昔洛韦与丙种球蛋白联用治疗HCMV感染,加强疗效。GCV是目前临床上使用的最主要治疗药物,是一种无环鸟苷的衍生物。然而,GCV只能抑制病毒感染,不能彻底消灭病毒。To date, there are no specific treatments for HCMV infection. Clinically, the drugs in antiviral therapy are GCV, valganciclovir, foscarnet, cidofovir, and ganciclovir can be used in combination with gamma globulin to treat HCMV infection and enhance the efficacy. GCV is currently the most important therapeutic drug used clinically and is a derivative of acyclovir. However, GCV can only suppress viral infections and cannot completely eliminate the virus.
通过对动物模型和CMV感染者研究发现T细胞免疫应答在抑制CMV复制,阻止其致病方面具有决定性的作用,机体对CMV的免疫应答主要由Pp65所介导。Pp65 蛋白是病毒颗粒的主要成分,在病毒复制早期就可以观察到,它也是一种较强的抗原,可刺激机体免疫应答,有助于清除病毒。Pp65
495-503(NLVPMVATV)是由HLA-A2提呈的T细胞主要识别肽段。以下HLA-A2/Pp65
495-503(NLVPMVATV)均简写为HLA-A2/NLVPMVATV。基于以上研究,在肿瘤生物治疗方面的研究上,Pp65抗原又成为研究的热点。尤其作为基因修饰的TCR,CART,TCR样抗体的优势靶点。
Through studies on animal models and CMV-infected individuals, it was found that the T cell immune response plays a decisive role in inhibiting CMV replication and preventing its pathogenesis. The body's immune response to CMV is mainly mediated by Pp65. Pp65 protein is the main component of viral particles and can be observed early in viral replication. It is also a strong antigen that stimulates the body's immune response and helps clear the virus. Pp65 495-503 (NLVPMVATV) is a T cell primary recognition peptide presented by HLA-A2. The following HLA-A2/Pp65 495-503 (NLVPMVATV) are abbreviated as HLA-A2/NLVPMVATV. Based on the above research, Pp65 antigen has become a research hotspot in the research of tumor biotherapy. Especially as a dominant target for genetically modified TCR, CART, TCR-like antibodies.
TCR虽然既能识别胞外抗原也能识别通过抗原加工递呈至细胞表面的胞内抗原,但TCR通常需要从T细胞克隆中分离出特异性的αβTCR基因,难度较大,重复性不高。此外,转基因TCR还有TCR错配带来的潜在安全隐患,外源TCR的两条链可能会和内源TCR亚基发生错配,组合成新的TCR。这种错配的TCR会形成未知的特异性,可能会靶向正常组织,导致严重的移植物抗宿主反应。Although TCR can recognize both extracellular antigens and intracellular antigens that are presented to the cell surface by antigen processing, TCR usually needs to isolate specific αβTCR genes from T cell clones, which is difficult and reproducible. In addition, transgenic TCRs have potential safety hazards associated with TCR mismatches, and the two strands of exogenous TCR may be mismatched with endogenous TCR subunits to form a new TCR. This mismatched TCR creates an unknown specificity that may target normal tissues, resulting in a severe graft-versus-host response.
如果能制备出识别MHC多肽复合物的抗体分子,并表达至细胞表面,就可以将T细胞免疫和成熟的抗体技术相结合,开发出一种兼具抗体和T细胞优势的新型T细胞修饰治疗技术。这样新型的识别MHC多肽复合物的分子与CAR相比,因具有天然T细胞受体的功能,沿用生命进化过程中获得的自我异体识别机制,即可识别肿瘤胞外抗原,也可识别通过抗原加工形成的病毒抗原,因而具有更广泛的应用,具有得天独厚的优势。If an antibody molecule that recognizes the MHC polypeptide complex can be prepared and expressed on the cell surface, T cell immunity and mature antibody technology can be combined to develop a novel T cell modification treatment that combines the advantages of antibodies and T cells. technology. Compared with the CAR, the novel MHC polypeptide complex recognizes the tumor extracellular antigen and recognizes the antigen through the self-heterologous recognition mechanism obtained during the evolution of life. The formation of viral antigens, and thus has a wider range of applications, has a unique advantage.
Willensen等将MAGE-A1多肽特异性,HLA-A1限制性的MAR用反转录病毒武装T细胞后,证明MAR-A1具有特异性识别HLA-A1/MAGE-A1双阳性黑色素瘤细胞,诱导T细胞释放干扰素,并在体外特异性杀伤这些黑色素瘤细胞,首次证实这类抗体的生物学功能(Chames P et al:PANS 2000,97(14):7969-74)。Andrea Schub等用HLA-A2/NLVPMVATV特异性的人SCFV基因构建了CMV-TCR,这些CMV-TCR能够特异性识别内源性加工的Pp65,分泌IFN-γ和IL-2,细胞毒性,并可以通过抗原刺激来富集(Andrea Schub et al:J Immunol 2009;183:6819-6830)。Willensen et al. specific MAGE-A1 polypeptide, HLA-A1 restricted MAR armed with retrovirus T cells, proved that MAR-A1 specifically recognizes HLA-A1/MAGE-A1 double positive melanoma cells, induces T The cells release interferon and specifically kill these melanoma cells in vitro, confirming the biological function of these antibodies for the first time (Chames P et al: PANS 2000, 97(14): 7969-74). Andrea Schub et al. constructed CMV-TCRs using HLA-A2/NLVPMVATV-specific human SCFV genes, which specifically recognize endogenously processed Pp65, secrete IFN-γ and IL-2, cytotoxicity, and Enriched by antigen stimulation (Andrea Schub et al: J Immunol 2009; 183: 6819-6830).
发明公开Invention disclosure
本发明的一个目的是提供一种识别HLA-A2/NLVPMVATV的单域抗体。It is an object of the present invention to provide a single domain antibody that recognizes HLA-A2/NLVPMVATV.
本发明提供的识别HLA-A2/NLVPMVATV的单域抗体包括互补决定区CDR1、互补决定区CDR2和互补决定区CDR3,所述单域抗体为如下(a)或(b):The single domain antibody recognizing HLA-A2/NLVPMVATV provided by the present invention comprises a complementarity determining region CDR1, a complementarity determining region CDR2 and a complementarity determining region CDR3, and the single domain antibody is as follows (a) or (b):
(a)所述单域抗体的互补决定区CDR1为如下(a1)或(a2)或(a3):(a) The complementarity determining region CDR1 of the single domain antibody is as follows (a1) or (a2) or (a3):
(a1)包括SEQ ID No.1所示的氨基酸序列;(a1) comprising the amino acid sequence of SEQ ID No. 1;
(a2)SEQ ID No.1所示的氨基酸序列;(a2) the amino acid sequence of SEQ ID No. 1;
(a3)将SEQ ID No.1所示的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加得到的具有相同功能的氨基酸序列;(a3) an amino acid sequence having the same function obtained by subjecting the amino acid sequence represented by SEQ ID No. 1 to substitution and/or deletion and/or addition of one or several amino acid residues;
所述单域抗体的互补决定区CDR2为如下(a4)或(a5)或(a6):The complementarity determining region CDR2 of the single domain antibody is as follows (a4) or (a5) or (a6):
(a4)包括SEQ ID No.2所示的氨基酸序列;(a4) comprising the amino acid sequence shown in SEQ ID No. 2;
(a5)SEQ ID No.2所示的氨基酸序列(a5) Amino acid sequence shown in SEQ ID No. 2
(a6)将SEQ ID No.2所示的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加得到的具有相同功能的氨基酸序列;(a6) an amino acid sequence having the same function obtained by subjecting the amino acid sequence represented by SEQ ID No. 2 to substitution and/or deletion and/or addition of one or several amino acid residues;
所述单域抗体的互补决定区CDR3为如下(a7)或(a8)或(a9):The complementarity determining region CDR3 of the single domain antibody is as follows (a7) or (a8) or (a9):
(a7)包括SEQ ID No.3所示的氨基酸序列;(a7) comprising the amino acid sequence shown in SEQ ID No. 3;
(a8)SEQ ID No.3所示的氨基酸序列;(a8) an amino acid sequence of SEQ ID No. 3;
(a9)将SEQ ID No.3所示的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加得到的具有相同功能的氨基酸序列;(a9) an amino acid sequence having the same function obtained by subjecting the amino acid sequence represented by SEQ ID No. 3 to substitution and/or deletion and/or addition of one or several amino acid residues;
(b)所述单域抗体的互补决定区CDR1为如下(b1)或(b2)或(b3):(b) The complementarity determining region CDR1 of the single domain antibody is as follows (b1) or (b2) or (b3):
(b1)包括SEQ ID No.4所示的氨基酸序列;(b1) comprising the amino acid sequence shown in SEQ ID No. 4;
(b2)SEQ ID No.4所示的氨基酸序列(b2) the amino acid sequence shown in SEQ ID No.
(b3)将SEQ ID No.4所示的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加得到的具有相同功能的氨基酸序列;(b3) an amino acid sequence having the same function obtained by subjecting the amino acid sequence represented by SEQ ID No. 4 to substitution and/or deletion and/or addition of one or several amino acid residues;
所述单域抗体的互补决定区CDR2为如下(b4)或(b5)或(b6):The complementarity determining region CDR2 of the single domain antibody is as follows (b4) or (b5) or (b6):
(b4)包括SEQ ID No.5所示的氨基酸序列;(b4) comprising the amino acid sequence of SEQ ID No. 5;
(b5)SEQ ID No.5所示的氨基酸序列(b5) the amino acid sequence shown in SEQ ID No. 5
(b6)将SEQ ID No.5所示的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加得到的具有相同功能的氨基酸序列;(b6) an amino acid sequence having the same function obtained by subjecting the amino acid sequence represented by SEQ ID No. 5 to substitution and/or deletion and/or addition of one or several amino acid residues;
所述单域抗体的互补决定区CDR3为如下(b7)或(b8)或(a9):The complementarity determining region CDR3 of the single domain antibody is as follows (b7) or (b8) or (a9):
(b7)包括SEQ ID No.6所示的氨基酸序列;(b7) comprising the amino acid sequence of SEQ ID No. 6;
(b8)SEQ ID No.6所示的氨基酸序列;(b8) the amino acid sequence of SEQ ID No. 6;
(b9)将SEQ ID No.6所示的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加得到的具有相同功能的氨基酸序列。(b9) An amino acid sequence having the same function obtained by subjecting the amino acid sequence represented by SEQ ID No. 6 to substitution and/or deletion and/or addition of one or several amino acid residues.
具体地,所述单域抗体为如下(c1)或(c2):Specifically, the single domain antibody is as follows (c1) or (c2):
(c1)SEQ ID No.7或SEQ ID No.8所示的氨基酸序列;(c1) the amino acid sequence of SEQ ID No. 7 or SEQ ID No. 8;
(c2)将SEQ ID No.7或SEQ ID No.8所示的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加得到的具有相同功能的氨基酸序列。(c2) An amino acid sequence having the same function obtained by subjecting the amino acid sequence represented by SEQ ID No. 7 or SEQ ID No. 8 to substitution and/or deletion and/or addition of one or several amino acid residues.
本发明的另一个目的是提供上述单域抗体的衍生物。Another object of the present invention is to provide a derivative of the above single domain antibody.
本发明提供的衍生物为如下(d1)-(d9)中任一种:The derivative provided by the present invention is any of the following (d1) to (d9):
(d1)由上述单域抗体与至少1个具治疗或识别功能的多肽分子制备而成的融合蛋白;(d1) a fusion protein prepared from the above single domain antibody and at least one polypeptide molecule having therapeutic or recognition function;
(d2)含有上述单域抗体的多特异或多功能分子;(d2) a multispecific or multifunctional molecule comprising the above single domain antibody;
(d3)含有上述单域抗体的组合物;(d3) a composition comprising the above single domain antibody;
(d4)含有上述单域抗体的免疫偶联物;(d4) an immunoconjugate comprising the above single domain antibody;
(d5)将上述单域抗体或其抗原结合部分进行修饰和/或改造后得到的抗体;(d5) an antibody obtained by modifying and/or modifying the above single domain antibody or antigen binding portion thereof;
(d6)含有上述互补决定区的重链变区或轻链变区;(d6) a heavy chain variable region or a light chain variable region comprising the above-described complementarity determining region;
(d7)含有上述互补决定区的scFv或抗体;(d7) an scFv or antibody comprising the above-described complementarity determining region;
(d8)含有上述互补决定区中的一个或者两个或者两个以上的氨基酸序列,且至少与一个互补决定区的氨基酸序列具有至少79%同源性;(d8) comprising one or two or more amino acid sequences of said complementarity determining regions, and having at least 79% homology to an amino acid sequence of one complementarity determining region;
(d9)含有上述单域抗体的框架区中的一个或者两个或者两个以上的氨基 酸序列,且至少与一个框架区的氨基酸序列具有至少90%同源性。(d9) one or two or more amino acid sequences in the framework region of the above single domain antibody, and having at least 90% homology to the amino acid sequence of one framework region.
上述衍生物中,所述融合蛋白是将上述单域抗体与至少1个具治疗或识别功能的多肽分子直接融合得到的,或通过接头肽与1个或1个以上的具治疗或识别功能的多肽分子连接得到的。In the above derivative, the fusion protein is obtained by directly fusing the above single domain antibody with at least one polypeptide molecule having therapeutic or recognition function, or by a linker peptide and one or more therapeutic or recognition functions. The polypeptide molecules are linked together.
上述衍生物中,所述具治疗或识别功能的多肽分子为人源Fc蛋白。所述融合蛋白是将上述单域抗体与人源Fc蛋白融合得到的Fc融合蛋白。上述单域抗体融合人源Fc蛋白后,由单价抗体成为双价抗体,亲和力有所提高。In the above derivatives, the polypeptide molecule having a therapeutic or recognition function is a human Fc protein. The fusion protein is an Fc fusion protein obtained by fusing the above single domain antibody with a human Fc protein. When the single domain antibody is fused to the human Fc protein, the monovalent antibody becomes a bivalent antibody, and the affinity is improved.
所述Fc融合蛋白的具体制备方法包括如下步骤:将上述单域抗体的编码基因和人源Fc蛋白的编码基因导入宿主细胞,得到重组细胞;培养所述重组细胞,得到所述融合蛋白。The specific preparation method of the Fc fusion protein comprises the steps of: introducing the coding gene of the single domain antibody and the coding gene of the human Fc protein into a host cell to obtain a recombinant cell; and culturing the recombinant cell to obtain the fusion protein.
具体地,所述单域抗体的编码基因和所述人源Fc蛋白的编码基因是通过重组载体导入宿主细胞;Specifically, the coding gene of the single domain antibody and the coding gene of the human Fc protein are introduced into a host cell by a recombinant vector;
所述重组载体为将含有所述单域抗体的编码基因和所述人源Fc蛋白的编码基因的片段插入表达载体的多克隆位点中得到的。The recombinant vector is obtained by inserting a gene encoding the single domain antibody and a fragment encoding the human Fc protein into a multiple cloning site of an expression vector.
具体地,所述含有所述单域抗体的编码基因和所述人源Fc蛋白的编码基因的片段为SEQ ID No.11所示的DNA分子。Specifically, the gene encoding the single domain antibody and the gene encoding the human Fc protein are the DNA molecules shown in SEQ ID No. 11.
具体地,所述表达载体可为pcDNA3.1;所述宿主细胞可为293F细胞。Specifically, the expression vector may be pcDNA3.1; the host cell may be a 293F cell.
上述衍生物中,所述组合物可为药物组合物,其含有与药学上可接受的载体。本发明的药物组合物可在联合治疗中施用,即与其他药剂联用。文中所用术语“药学上可接受的载体”包括生理学相容的任何和所有溶剂、分散介质、包衣、抗细菌和抗真菌剂、等渗和吸收延迟剂等。优选地,该载体适合于静脉内、肌内、皮下、肠胃外、脊柱或表皮施用(如通过注射或输注)。根据施用途径,可将活性化合物即抗体、免疫偶联物或双特异性分子或多特异性分子包被于一种材料中,以保护该化合物免于可使该化合物失活的酸和其他天然条件的作用。In the above derivatives, the composition may be a pharmaceutical composition containing a pharmaceutically acceptable carrier. The pharmaceutical compositions of the invention may be administered in combination therapy, i.e., in combination with other agents. The term "pharmaceutically acceptable carrier" as used herein includes any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like which are physiologically compatible. Preferably, the carrier is suitable for intravenous, intramuscular, subcutaneous, parenteral, spinal or epidermal administration (e.g., by injection or infusion). Depending on the route of administration, the active compound, ie, an antibody, immunoconjugate or bispecific molecule or multispecific molecule, can be coated in a material to protect the compound from acids and other natural compounds that can inactivate the compound. The role of the condition.
本发明的药物组合物可包含一种或多种药学上可接受的盐。文中所用术语“药学上可接受的盐”是指保持了亲代化合物的所需生物活性且不引起任何不想要的毒理学作用的盐。这样的盐的例子包括酸加成盐和碱加成盐。酸加成盐包括那些由无毒性无机酸如盐酸、硝酸、磷酸、硫酸、氢溴酸、氢碘酸、亚磷酸等衍生的盐,以及由无毒性有机酸如脂族单羧酸和二羧酸、苯基取代的链烷酸、羟基链烷酸、芳族酸、脂族和芳族磺酸等衍生的盐。碱加成盐包括那些由碱土金属如钠、钾、镁、钙等衍生的盐,以及由无毒性有机胺如N,N’-二苄基乙二胺、N-甲基葡糖胺、氯普鲁卡因、胆碱、二乙醇胺、乙二胺、普鲁卡因等衍生的盐。The pharmaceutical compositions of the invention may comprise one or more pharmaceutically acceptable salts. The term "pharmaceutically acceptable salt" as used herein refers to a salt which retains the desired biological activity of the parent compound and does not cause any unwanted toxicological effects. Examples of such salts include acid addition salts and base addition salts. Acid addition salts include those derived from non-toxic inorganic acids such as hydrochloric acid, nitric acid, phosphoric acid, sulfuric acid, hydrobromic acid, hydroiodic acid, phosphorous acid, and the like, as well as non-toxic organic acids such as aliphatic monocarboxylic acids and dicarboxylic acids. Derivatized salts of acids, phenyl substituted alkanoic acids, hydroxyalkanoic acids, aromatic acids, aliphatic and aromatic sulfonic acids, and the like. Base addition salts include those derived from alkaline earth metals such as sodium, potassium, magnesium, calcium, and the like, as well as non-toxic organic amines such as N,N'-dibenzylethylenediamine, N-methylglucamine, chlorine Salt derived from procaine, choline, diethanolamine, ethylenediamine, procaine, and the like.
本发明的药物组合物也可含有药学上可接受的抗氧化剂。药学上可接受的抗氧化剂的例子包括:(1)水溶性抗氧化剂,如抗坏血酸、盐酸半胱氨酸、硫酸氢钠、焦亚硫酸钠,亚硫酸钠等;(2)油溶性抗氧化剂,如棕榈酸抗坏血 酸酯、丁羟茴醚(BHA)、丁羟甲苯(DHT)、卵磷脂、没食子酸丙酯、α-生育酚等;(3)金属螯合剂,如柠檬酸、乙二胺四乙酸(EDTA)、山梨糖醇、酒石酸、磷酸等。The pharmaceutical compositions of the invention may also contain a pharmaceutically acceptable antioxidant. Examples of pharmaceutically acceptable antioxidants include: (1) water-soluble antioxidants such as ascorbic acid, cysteine hydrochloride, sodium hydrogen sulfate, sodium metabisulfite, sodium sulfite, etc.; (2) oil-soluble antioxidants such as ascorbic acid palmitate Ester, butylated hydroxyanisole (BHA), butylated hydroxytoluene (DHT), lecithin, propyl gallate, alpha-tocopherol, etc.; (3) metal chelating agents such as citric acid, ethylenediaminetetraacetic acid (EDTA) , sorbitol, tartaric acid, phosphoric acid, etc.
可用于本发明的药物组合物中的适当的水性或非水性载体的例子包括水,乙醇,多元醇(如甘油、丙二醇、聚乙二醇等),及其适当的混合物,植物油如橄榄油,和可注射的有机酯如油酸乙酯。例如通过应用包衣材料如卵磷脂,在分散液的情况下通过维持所需的颗粒大小,以及通过应用表面活性剂,可维持适当的流动性。Examples of suitable aqueous or nonaqueous vehicles which may be used in the pharmaceutical compositions of the present invention include water, ethanol, polyols (e.g., glycerol, propylene glycol, polyethylene glycol, and the like), and suitable mixtures thereof, vegetable oils such as olive oil, And injectable organic esters such as ethyl oleate. Proper fluidity can be maintained, for example, by the application of coating materials such as lecithin, by the maintenance of the required particle size in the case of dispersions, and by the use of surfactants.
在实际应用中,这些组合物也可含有佐剂,如防腐剂、润湿剂、乳化剂和分散剂。可以通过灭菌程序或通过包含各种抗细菌和抗真菌剂如对羟基苯甲酸酯、氯代丁醇、苯酚山梨酸等来确保防止存在微生物。In practical applications, these compositions may also contain adjuvants such as preservatives, wetting agents, emulsifying agents and dispersing agents. Prevention of the presence of microorganisms can be ensured by a sterilization procedure or by the inclusion of various antibacterial and antifungal agents such as parabens, chlorobutanol, phenol sorbic acid, and the like.
本发明的组合物可以利用本领域公知的一种或多种方法通过一种或多种施用途径施用。本领域技术人员应当明白,施用途径和/或方式根据需要的结果而不同。The compositions of the invention may be administered by one or more routes of administration using one or more methods well known in the art. Those skilled in the art will appreciate that the route and/or manner of administration will vary depending on the desired result.
本发明的组合物具有体外和体内治疗应用。例如,这些分子可以施用于体外或离体培养的细胞,或者体内施用于人类受试者,以治疗、预防或诊断多种疾病。文中使用的术语“受试者”包括人和非人动物。非人动物包括所有脊椎动物,例如哺乳动物和非哺乳动物,例如非人灵长类动物、绵羊、狗、猫、牛、马、鸡、两栖类动物和爬行类动物。The compositions of the invention have therapeutic applications in vitro and in vivo. For example, these molecules can be administered to cells cultured in vitro or ex vivo, or administered to a human subject in vivo to treat, prevent or diagnose a variety of diseases. The term "subject" as used herein includes both human and non-human animals. Non-human animals include all vertebrates, such as mammals and non-mammals, such as non-human primates, sheep, dogs, cats, cows, horses, chickens, amphibians, and reptiles.
上述衍生物中,所述免疫偶联物可为由上述单域抗体与治疗性剂如细胞毒素、药物(例如免疫抑制剂)或放射性毒素偶联,得到的偶联物。这些偶联物称为“免疫偶联物”。包括一个或多个细胞毒素的免疫偶联物称作“免疫毒素”。细胞毒素或细胞毒性剂包括对细胞有害(例如杀伤)的任何试剂。实例包括紫杉醇、细胞松弛素B、短杆菌肽D、溴化乙啶、吐根碱、丝裂霉素、表鬼臼毒吡喃葡糖苷、表鬼臼毒噻吩糖苷、长春新碱、长春碱、秋水仙素、阿霉素、柔红霉素、二羟基炭疽菌素二酮、米托蒽醌、光辉霉素、放线菌素D、l-脱氢睾酮、糖皮质激素、普鲁卡因、丁卡因、利多卡因、普萘洛尔和嘌呤霉素和它们的类似物或同系物。治疗剂还包括,例如,抗代谢物(例如,氨甲喋呤、6-巯基嘌呤、6-硫代鸟嘌呤、阿糖胞苷、5-氟尿嘧唳、氨烯咪胺(decarbazine),烧化剂(例如,氮芥、thioepa苯丁酸氮芥、苯丙氨酸氮芥、卡莫司汀(BSNU)和洛莫司汀(CCNU)、环磷酰胺、白消安、二溴甘露糖醇、链唑霉素、丝裂霉素C和顺-二氯二胺铂(II)(DDP)顺铂),氨茴霉素类(例如,柔红菌素(以前称为道诺霉素)和阿霉素),抗生素(例如,放线菌素D、博来霉素、光辉霉素和安曲霉素(AMC)),和抗有丝分裂剂(例如,长春新碱和长春碱)。能与本发明抗体偶联的治疗性细胞毒素的其他优选例子包括倍癌霉素、刺孢霉素、美坦生、auristatin,和它们的衍生物。将细胞毒素与本发明的抗体偶联可以利用本领域可用的接头技术。In the above derivative, the immunoconjugate may be a conjugate obtained by coupling the above single domain antibody with a therapeutic agent such as a cytotoxin, a drug (for example, an immunosuppressive agent) or a radioactive toxin. These conjugates are referred to as "immunoconjugates." An immunoconjugate comprising one or more cytotoxins is referred to as an "immunotoxin." Cytotoxins or cytotoxic agents include any agent that is detrimental to the cell (eg, kills). Examples include paclitaxel, cytochalasin B, gramicidin D, ethidium bromide, ipecaine, mitomycin, epipodophyllotoxin, epipodophyllotoxin, vincristine, vinblastine , colchicine, doxorubicin, daunorubicin, dihydroxy anthrax dione, mitoxantrone, phosfomycin, actinomycin D, l-dehydrotestosterone, glucocorticoid, proca , tetracaine, lidocaine, propranolol and puromycin and their analogs or homologs. Therapeutic agents also include, for example, antimetabolites (eg, methotrexate, 6-mercaptopurine, 6-thioguanine, cytarabine, 5-fluorouracil, decarbazine, a burning agent ( For example, nitrogen mustard, thioepa chlorambucil, phenylalanine mustard, carmustine (BSNU) and lomustine (CCNU), cyclophosphamide, busulfan, dibromomannitol, chain Oxazomycin, mitomycin C and cis-dichlorodiamine platinum (II) (DDP) cisplatin, anthracyclines (eg, daunorubicin (formerly known as daunorubicin) and trichothecene , antibiotics (eg, actinomycin D, bleomycin, phosfomycin, and amphotericin (AMC)), and anti-mitotic agents (eg, vincristine and vinblastine). Other preferred examples of antibody-conjugated therapeutic cytotoxins include doxorubicin, calicheamicin, maytansin, auristatin, and derivatives thereof. Coupling of a cytotoxin with an antibody of the invention can be utilized in the art. Joint technology.
本发明的抗体也可与放射性同位素偶联,产生细胞毒性放射性药物,也被称为放射性免疫偶联物。能够与诊断或治疗性使用的抗体偶联的放射性同位素的例子包括但不限于碘
131、铟
111、钇
90和镥
177。制备放射性免疫偶联物的方法在本领域中已经建立。放射性免疫偶联物的例子可以作为商品获得,包括Zevalin
TM(IDEC Pharmaceuticals)和Bexxar
TM(Corixa Pharmaceuticals),能够利用类似的方法使用本发明的抗体制备放射性免疫偶联物。
The antibodies of the invention may also be conjugated to a radioisotope to produce a cytotoxic radiopharmaceutical, also known as a radioimmunoconjugate. Examples of radioisotopes that can be coupled to antibodies for diagnostic or therapeutic use include, but are not limited to, iodine 131 , indium 111 , 钇90, and 镥177 . Methods of preparing radioactive immunoconjugates have been established in the art. Examples of radioimmunoconjugates are commercially available, including Zevalin (TM) (IDEC Pharmaceuticals) and Bexxar (TM) (Corixa Pharmaceuticals), which are capable of producing radioimmunoconjugates using similar methods using the antibodies of the invention.
本发明的抗体偶联物可用于修饰特定的生物学反应,且药物部分不应理解为局限于经典的化学治疗剂。例如,药物部分可以是具有需要的生物活性的蛋白质或多肽。这样的蛋白质可包括,例如,具有酶活性的毒素或其活性片段,如相思豆毒蛋白、蓖麻毒蛋白A、假单胞菌外毒素或白喉毒素;蛋白质,如肿瘤坏死因子或干扰素-γ;或生物学反应调节物,如淋巴因子、白细胞介素-1(IL-1)、白细胞介素-2(IL-2)、白细胞介素-6(IL-6)、粒细胞巨噬细胞集落刺激因子(GM-CSF)、粒细胞集落刺激因子(G-CSF)或其他生长因子。The antibody conjugates of the invention can be used to modify a particular biological response, and the drug moiety should not be construed as being limited to classical chemotherapeutic agents. For example, the drug moiety can be a protein or polypeptide having the desired biological activity. Such proteins may include, for example, enzymatically active toxins or active fragments thereof, such as abrin, ricin A, Pseudomonas exotoxin or diphtheria toxin; proteins such as tumor necrosis factor or interferon- γ; or biological response regulators such as lymphokines, interleukin-1 (IL-1), interleukin-2 (IL-2), interleukin-6 (IL-6), granulocyte macrophages Cell colony stimulating factor (GM-CSF), granulocyte colony stimulating factor (G-CSF) or other growth factors.
将上述单域抗体或其抗原结合部分进行修饰和/或改造后得到的抗体基因工程改造的抗体也属于本发明的保护范围。本发明提供的单域抗体包含CDR1、CDR2和CDR3序列,其中这些CDR序列中的一个或多个包含基于本发明的单域抗体的特定氨基酸序列或其保守修饰,并且其中该抗体保留本发明抗体具有的识别和/或结合HLA-A2/NLVPMVATV的功能特性。文中所用的术语“保守序列修饰”是指不会显著影响或改变含该氨基酸序列的抗体的结合特征的氨基酸修饰。这样的保守修饰包括氨基酸替代、添加和缺失。可以通过本领域公知的技术,如定点诱变和PCR介导的诱变,向本发明的抗体中引入修饰。保守氨基酸替代是指将氨基酸残基替代为一个具有相似侧链的氨基酸残基。具有相似侧链的氨基酸残基家族在本领域中已经定义。这些家族包括:具有碱性侧链(例如赖氨酸、精氨酸、组氨酸)、酸性侧链(例如天冬氨酸、谷氨酸)、不带电荷极性侧链(例如甘氨酸、天冬酰胺、谷氨酰胺、丝氨酸、苏氨酸、酪氨酸、半胱氨酸、色氨酸)、非极性侧链(例如丙氨酸、缬氨酸、亮氨酸、异亮氨酸、脯氨酸、苯丙氨酸、甲硫氨酸)、β-分支侧链(例如苏氨酸、缬氨酸、异亮氨酸)和芳族侧链(例如酪氨酸、苯丙氨酸、色氨酸、组氨酸)的氨基酸。因此,本发明抗体的CDR区内的一个或多个氨基酸残基可以被替代为来自相同侧链家族的其他氨基酸残基,并且可以用本文所述的体外亲和力试验检测改变的抗体保留的上述功能。The antibody genetically engineered antibody obtained by modifying and/or modifying the above single domain antibody or antigen binding portion thereof is also within the scope of the present invention. The single domain antibodies provided herein comprise CDR1, CDR2 and CDR3 sequences, wherein one or more of these CDR sequences comprise a specific amino acid sequence based on a single domain antibody of the invention or a conservative modification thereof, and wherein the antibody retains an antibody of the invention It has the functional characteristics of identifying and/or combining HLA-A2/NLVPMVATV. The term "conservative sequence modification" as used herein refers to an amino acid modification that does not significantly affect or alter the binding characteristics of an antibody comprising the amino acid sequence. Such conservative modifications include amino acid substitutions, additions and deletions. Modifications can be introduced into the antibodies of the invention by techniques well known in the art, such as site-directed mutagenesis and PCR-mediated mutagenesis. Conservative amino acid substitution refers to the replacement of an amino acid residue with an amino acid residue having a similar side chain. A family of amino acid residues having similar side chains has been defined in the art. These families include: basic side chains (eg, lysine, arginine, histidine), acidic side chains (eg, aspartic acid, glutamic acid), uncharged polar side chains (eg, glycine, Asparagine, glutamine, serine, threonine, tyrosine, cysteine, tryptophan), non-polar side chains (eg alanine, valine, leucine, isoleucine) Acid, proline, phenylalanine, methionine), β-branched side chains (eg threonine, valine, isoleucine) and aromatic side chains (eg tyrosine, styrene Amino acids of amino acids, tryptophan, histidine). Thus, one or more amino acid residues within the CDR regions of an antibody of the invention can be substituted for other amino acid residues from the same side chain family, and the above-described functions of altered antibody retention can be detected using the in vitro affinity assays described herein. .
可以进行的一种类型的可变区工程化是CDR移植。抗体主要是通过位于互补决定区(CDR)中的氨基酸残基与靶抗原相互作用。由于这个原因,CDR内的氨基酸序列比CDR外的序列在各个抗体之间更加多样化。由于CDR序列负责大多数抗体-抗原相互作用,因此通过构建如下的表达载体可以表达模拟该特定存在抗体的特性的重组抗体:该表达载体包含来自特定存在抗体的CDR序列,该 CDR序列被移植到来自具有不同特性的不同抗体的骨架序列上,这些骨架序列可以从公共DNA数据库或发表的参考文献中获得。One type of variable region engineering that can be performed is CDR grafting. The antibody interacts with the target antigen primarily through amino acid residues located in the complementarity determining regions (CDRs). For this reason, the amino acid sequences within the CDRs are more diverse between the individual antibodies than the sequences outside the CDRs. Since the CDR sequences are responsible for most antibody-antigen interactions, recombinant antibodies that mimic the properties of the particular antibody present can be expressed by constructing an expression vector comprising a CDR sequence from a particular antibody present, which is grafted to From the backbone sequences of different antibodies with different properties, these backbone sequences can be obtained from public DNA databases or published references.
另一种类型的可变区修饰是将CDR1、CDR2和/或CDR3区内的氨基酸序列突变,从而改善目标抗体的一种或多种结合特性(例如亲和力)。可以进行定点诱变或PCR介导的诱变,以引入突变,对抗体结合的影响,或者其他目标功能特性,可以用文中所述以及在实施例中提供的试验来评价。优选引入(如上文所述的)保守序列修饰。突变可以是氨基酸替代、添加或缺失,但是优选替代。而且,一般在CDR区内改变不超过5个残基。Another type of variable region modification is to mutate the amino acid sequence within the CDR1, CDR2 and/or CDR3 regions to improve one or more binding properties (e.g., affinity) of the antibody of interest. Site-directed mutagenesis or PCR-mediated mutagenesis can be performed to introduce mutations, effects on antibody binding, or other target functional properties, which can be evaluated using the assays described herein and provided in the Examples. Conservative sequence modifications (as described above) are preferably introduced. The mutation may be an amino acid substitution, addition or deletion, but is preferably substituted. Moreover, typically no more than 5 residues are altered within the CDR regions.
本发明的工程化抗体包括例如为了改善抗体性质而对其骨架残基进行了修饰的抗体。进行这样的骨架修饰一般是为了降低抗体的免疫原性。所述骨架修饰涉及对骨架区内、或者甚至一个或多个CDR区内的一个或多个残基进行突变,以除去T细胞表位,从而降低该抗体的潜在的免疫原性。Engineered antibodies of the invention include, for example, antibodies whose backbone residues have been modified to improve the properties of the antibody. Such backbone modifications are generally made to reduce the immunogenicity of the antibody. The backbone modification involves mutating one or more residues within the framework region, or even one or more CDR regions, to remove T cell epitopes, thereby reducing the potential immunogenicity of the antibody.
上述衍生物中,所述框架区为SEQ ID No.7第1-26位、第36-49位、第56-97位、第111-121位,或SEQ ID No.8第1-26位、第36-49位、第56-97位、第115-125位。In the above derivatives, the framework region is positions 1-26, 36-49, 56-97, 111-121 of SEQ ID No. 7, or positions 1-26 of SEQ ID No. 8. , 36-49, 56-97, 115-125.
在本文中使用的术语“同源性”可描述两个或更多氨基酸序列相似程度,第一个氨基酸序列和第二个氨基酸序列之间同源性的百分比可以通过公式:(第一个氨基酸序列中与第二个氨基酸序列中相应位置处的氨基酸序列相同的氨基酸残基的数量)/(第一个氨基酸序列中氨基酸总数)*100%来计算,其中第二个氨基酸序列只能够的某个氨基酸的缺失、插入、替换或添加(与第一个氨基酸相比)被认为是有差别。同源性百分比也可以利用已知的用于序列匹配的计算机运算程序如NCBI Blast获得。The term "homology" as used herein may describe the degree of similarity between two or more amino acid sequences, and the percentage of homology between the first amino acid sequence and the second amino acid sequence may be determined by the formula: (first amino acid The number of amino acid residues in the sequence that is identical to the amino acid sequence at the corresponding position in the second amino acid sequence) / (total number of amino acids in the first amino acid sequence) * 100%, wherein the second amino acid sequence can only be Deletions, insertions, substitutions or additions of amino acids (compared to the first amino acid) are considered to be different. The percent homology can also be obtained using known computer algorithms for sequence matching such as NCBI Blast.
本发明还提供了与上述单域抗体或上述衍生物相关的生物材料。The present invention also provides a biological material related to the above single domain antibody or the above derivative.
本发明提供的生物材料为如下(e1)-(e4)中任一种:The biomaterial provided by the present invention is any one of the following (e1) to (e4):
(e1)编码上述单域抗体的核酸分子;(e1) a nucleic acid molecule encoding the above single domain antibody;
(e2)编码上述融合蛋白的核酸分子;(e2) a nucleic acid molecule encoding the above fusion protein;
(e3)含有(e1)或(e2)所述的核酸分子的载体;(e3) a vector comprising the nucleic acid molecule of (e1) or (e2);
(e4)含有(e1)或(e2)所述的核酸分子或(e3)所述的载体的宿主细胞。(e4) A host cell comprising the nucleic acid molecule of (e1) or (e2) or the vector of (e3).
上述生物材料中,所述核酸分子为如下(f1)-(f3)中任一种:In the above biological material, the nucleic acid molecule is any one of the following (f1) to (f3):
(f1)SEQ ID No.9或SEQ ID No.10或SEQ ID No.11所示的DNA分子;(f1) a DNA molecule represented by SEQ ID No. 9 or SEQ ID No. 10 or SEQ ID No. 11;
(f2)与(f1)限定的核苷酸序列具有75%或75%以上同一性,且编码上述单域抗体或融合蛋白的DNA分子;(f2) a DNA molecule having 75% or more of the identity of the nucleotide sequence defined by (f1) and encoding the above single domain antibody or fusion protein;
(f3)在严格条件下与(f1)或(f2)限定的核苷酸序列杂交,且编码上述单域抗体或融合蛋白的DNA分子。(f3) a DNA molecule which hybridizes under stringent conditions to a nucleotide sequence defined by (f1) or (f2) and which encodes the above single domain antibody or fusion protein.
上述生物材料中,所述核酸分子可以为编码各互补决定区或单域抗体或融合蛋白氨基酸序列的核苷酸序列,通过遗传密码子可以随时获得相应核酸分子 的具体序列。由于遗传密码子具有兼并性,该核酸分子可以根据不同的应用目的不同。在本文中使用的术语“密码子”又称三联体密码子,指对应于某种氨基酸的核苷酸三联体。在转译过程中决定该种氨基酸插入生长中多肽链的位置。In the above biological material, the nucleic acid molecule may be a nucleotide sequence encoding each complementarity determining region or a single domain antibody or a fusion protein amino acid sequence, and the specific sequence of the corresponding nucleic acid molecule can be obtained at any time by the genetic code. Due to the annexation of the genetic code, the nucleic acid molecule can be varied for different application purposes. The term "codon" as used herein, also referred to as a triplet codon, refers to a nucleotide triplet corresponding to an amino acid. The location of the amino acid insertion into the growing polypeptide chain is determined during translation.
本发明的核酸分子可以利用常规分子生物学技术获得。对于从免疫球蛋白基因文库中获得的抗体(例如使用噬菌体展示技术),编码抗体的核酸可以从文库中获得。The nucleic acid molecules of the invention can be obtained using conventional molecular biology techniques. For antibodies obtained from immunoglobulin gene libraries (eg, using phage display technology), nucleic acids encoding antibodies can be obtained from libraries.
上述生物材料中,所述载体中的所述核酸序列或者至少部分序列可以通过合适的表达系统进行表达,以得到相应的蛋白质或多肽;所述表达系统包括细菌、酵母菌、丝状真菌、哺乳动物细胞、昆虫细胞、植物细胞或无细胞表达系统。In the above biological material, the nucleic acid sequence or at least part of the sequence in the vector can be expressed by a suitable expression system to obtain a corresponding protein or polypeptide; the expression system includes bacteria, yeast, filamentous fungus, lactation Animal cells, insect cells, plant cells or cell-free expression systems.
本发明还提供了上述单域抗体或上述衍生物或上述生物材料的新用途。The present invention also provides the novel use of the above single domain antibody or the above derivative or the above biological material.
本发明提供了上述单域抗体或上述衍生物或上述生物材料在如下(g1)-(g4)中任一种中的应用:The present invention provides the use of the above single domain antibody or the above derivative or the above biological material in any of the following (g1) to (g4):
(g1)特异性识别和/或结合HLA-A2/NLVPMVATV;(g1) specifically recognizing and/or binding to HLA-A2/NLVPMVATV;
(g2)制备特异性识别和/或结合HLA-A2/NLVPMVATV的产品;(g2) preparing a product that specifically recognizes and/or binds to HLA-A2/NLVPMVATV;
(g3)治疗巨细胞病毒引起的疾病;(g3) treating diseases caused by cytomegalovirus;
(g4)制备治疗巨细胞病毒引起的疾病的产品。(g4) A product for treating a disease caused by cytomegalovirus.
上述应用中,所述产品为药物。In the above application, the product is a drug.
可以应用本发明的抗体治疗的巨细胞病毒引起的疾病的具体例子包括但不限于:巨细胞病毒而引起的间质性肺炎、肝炎、胃肠炎或视网膜炎等。Specific examples of diseases caused by cytomegalovirus which can be treated with the antibody of the present invention include, but are not limited to, interstitial pneumonia caused by cytomegalovirus, hepatitis, gastroenteritis or retinitis.
在实际应用中,可用本发明的抗体或融合蛋白对T细胞在体外进行修饰,得到武装后T细胞,武装后T细胞增殖放大后,将其放回受试者体内,武装T细胞可特异性识别被巨细胞病毒感染的细胞,用于体内巨细胞病毒引起的疾病的治疗。T细胞的修饰可通过本领域技术人员公知的常规方法实现。In practical applications, the T cells can be modified in vitro by using the antibody or fusion protein of the present invention to obtain T cells after arming, and the T cells are amplified after being armed, and then returned to the subject, and the armed T cells can be specific. Identify cells infected with cytomegalovirus for the treatment of diseases caused by cytomegalovirus in vivo. Modification of T cells can be achieved by conventional methods well known to those skilled in the art.
本发明的HLA-A2/NLVPMVATV为HLA-A2/NLVPMVATV抗原复合物,所述HLA-A2/NLVPMVATV抗原复合物是指巨细胞病毒抗原肽NLVPMVATV与抗原分子HLA-A2的复合物。The HLA-A2/NLVPMVATV of the present invention is an HLA-A2/NLVPMVATV antigen complex, which is a complex of the cytomegalovirus antigen peptide NLVPMVATV and the antigen molecule HLA-A2.
本专利所涉及的HLA-A2/NLVPMVATV抗体为单域抗体。单域抗体不同于SCFV,它仅含有抗体重链的一个可变区,大小约是SCFV的一半,是最小的全功能性的抗原结合片段,免疫原性较弱;更易通过血管壁,穿透实体瘤,有利于肿瘤的治疗。针对HLA-A2/NLVPMVATV的单域抗体还未见报道。The HLA-A2/NLVPMVATV antibody referred to in this patent is a single domain antibody. A single domain antibody differs from SCFV in that it contains only one variable region of the antibody heavy chain, approximately half the size of SCFV, and is the smallest fully functional antigen-binding fragment with weak immunogenicity; easier to penetrate through the vessel wall Solid tumors are beneficial to the treatment of tumors. Single domain antibodies against HLA-A2/NLVPMVATV have not been reported.
本发明针对现有技术中存在的技术问题,通过三轮生物淘选,从噬菌体单域文库中筛选得到亲和力较高的抗体,并将得到的抗体克隆至原核/真核表达载体中,与人源Fc融合表达,转染宿主细胞,获得Fc融合蛋白。经体外亲和力的验证:本发明提供的单域抗体及Fc融合蛋白均可特异性识别并结合HLA-A2/NLVPMVATV(巨细胞病毒抗原)抗原复合物,可开发成治疗肿瘤的抗体药物及其他有有益效果生物治疗产品,对于治疗巨细胞病毒引起的疾病具有重 要意义。The present invention is directed to the technical problems existing in the prior art, and the antibodies with higher affinity are screened from the phage single domain library by three rounds of biological panning, and the obtained antibodies are cloned into a prokaryotic/eukaryotic expression vector, and the human The Fc fusion gene is expressed, transfected into a host cell, and an Fc fusion protein is obtained. Verification of in vitro affinity: The single domain antibody and Fc fusion protein provided by the invention can specifically recognize and bind HLA-A2/NLVPMVATV (cytomegalovirus antigen) antigen complex, and can be developed into antibody drugs for treating tumors and other Beneficial effects Biotherapeutic products are of great importance for the treatment of diseases caused by cytomegalovirus.
本发明进一步通过下面的实施例进行阐述,不应将该实施例理解为进一步的限制。The invention is further illustrated by the following examples, which should not be construed as further limiting.
图1为本发明中三轮淘选后第一板ELISA检测及数据分析图。A是ELISA所有孔均包被抗原HLA-A2/NLVPMVATV;B是数据分析图,纵坐标为各孔在650nm下的光吸收值,横坐标为96个孔,其中,1-8为A1、B1、C1、D1、E1、F1、G1、H1,9-16为A2、B2、C2、D2、E2、F2、G2、H2,依次类推,89-96为A12、B12、C12、D12、E12、F12、G12、H12。Figure 1 is a diagram showing the first panel ELISA detection and data analysis after three rounds of panning in the present invention. A is the ELISA all the pore coated antigen HLA-A2/NLVPMVATV; B is the data analysis chart, the ordinate is the light absorption value of each hole at 650nm, the abscissa is 96 holes, of which, 1-8 is A1, B1 , C1, D1, E1, F1, G1, H1, 9-16 are A2, B2, C2, D2, E2, F2, G2, H2, and so on, 89-96 is A12, B12, C12, D12, E12, F12, G12, H12.
图2为本发明中三轮淘选后第二板ELISA检测及数据分析。A是ELISA所有孔均包被抗原HLA-A2/NLVPMVATV;B是数据分析图,纵坐标为各孔在650nm下的光吸收值,横坐标为96个孔,其中,1-8为A1、B1、C1、D1、E1、F1、G1、H1,9-16为A2、B2、C2、D2、E2、F2、G2、H2,依次类推,89-96为A12、B12、C12、D12、E12、F12、G12、H12。2 is an ELISA test and data analysis of a second plate after three rounds of panning in the present invention. A is the ELISA all the pore coated antigen HLA-A2/NLVPMVATV; B is the data analysis chart, the ordinate is the light absorption value of each hole at 650nm, the abscissa is 96 holes, of which, 1-8 is A1, B1 , C1, D1, E1, F1, G1, H1, 9-16 are A2, B2, C2, D2, E2, F2, G2, H2, and so on, 89-96 is A12, B12, C12, D12, E12, F12, G12, H12.
图3为本发明中的两种不同单域抗体对不同抗原的特异性检测及数据分析图。A是ELISA酶标板A、B两行包被抗原HLA-A2/ITDQVPFSV,C、D两行包被抗原HLA-A2/NLVPMVATV,E、F两行包被抗原HLA-A2/RMFPNAPYL,G、H两行包被抗原HLA-A2/SLLMWITQC;Line 1所加一抗为M4-F4,line 2为阳性对照;line3为某一个对四种抗原有交叉反应的抗体MA;line 4为M4-G5;B是数据分析图,纵坐标为650nm下的光吸收值,横坐标1,2,3,4为HLA-A2/ITDQVPFSV抗原,HLA-A2/NLVPMVATV抗原,HLA-A2/RMFPNAPYL抗原,HLA-A2/SLLMWITQC抗原。a,b,c,d依次为M4-F4,M5对照1,MA对照2,M4-G5。Figure 3 is a diagram showing the specificity detection and data analysis of two different single domain antibodies for different antigens in the present invention. A is the ELISA plate A and B coated antigen HLA-A2/ITDQVPFSV, C, D two lines coated antigen HLA-A2/NLVPMVATV, E, F two lines coated antigen HLA-A2/RMFPNAPYL, G, The H line is coated with the antigen HLA-A2/SLLMWITQC; the first antibody added to Line 1 is M4-F4, and the line 2 is the positive control; the line3 is an antibody MA that cross-reacts to the four antigens; the line 4 is M4-G5. B is a data analysis chart with ordinates at 650 nm, abscissa 1, 2, 3, 4 for HLA-A2/ITDQVPFSV antigen, HLA-A2/NLVPMVATV antigen, HLA-A2/RMFPNAPYL antigen, HLA- A2/SLLMWITQC antigen. a, b, c, d are M4-F4, M5 control 1, MA control 2, M4-G5.
图4为本发明中的单域抗体在pcDNA3.1中融合Fc的质粒图谱示意图。单域抗体与Fc之间引入通过BamHⅠ酶切位点,单域抗体前使用HindⅢ限制性内切酶,Fc后使用XbaⅠ限制性酶切。单域抗体前有信号肽以及kozak序列。Figure 4 is a schematic representation of a plasmid map of a single domain antibody fused to Fc in pcDNA3.1 of the present invention. The single domain antibody was introduced into the BamHI restriction site, and the single domain antibody was ligated with HindIII restriction enzyme, and the Fc was digested with XbaI. The single domain antibody is preceded by a signal peptide and a kozak sequence.
图5为本发明中的pcDNA3.1表达的融合蛋白M4-G5-Fc的SDS-PAGE。Marker的条带从小到大依次为14,25,30,40,50,70,100,120,160KD。Line1为还原态M4-G5-Fc,Line2为非还原态M4-G5-Fc。Figure 5 is a SDS-PAGE of the fusion protein M4-G5-Fc of pcDNA3.1 expression in the present invention. Marker's strips are from 14, 25, 30, 40, 50, 70, 100, 120, 160 KD. Line 1 is a reduced form M4-G5-Fc and Line 2 is a non-reduced M4-G5-Fc.
图6为本发明中的融合蛋白M4-G5-Fc对不同抗原的特异性检测及数据分析。纵坐标为650nm下的光吸收值,横坐标1,2,3,4为HLA-A2/ITDQVPFSV抗原,HLA-A2/NLVPMVATV抗原,HLA-A2/RMFPNAPYL抗原,HLA-A2/SLLMWITQC抗原。样品为M4-G5-Fc,MB对照。Figure 6 is a specific detection and data analysis of different antigens of the fusion protein M4-G5-Fc in the present invention. The ordinate is the light absorption at 650 nm, and the abscissa 1, 2, 3, 4 is the HLA-A2/ITDQVPFSV antigen, HLA-A2/NLVPMVATV antigen, HLA-A2/RMFPNAPYL antigen, HLA-A2/SLLMWITQC antigen. The sample was M4-G5-Fc, MB control.
实施发明的最佳方式The best way to implement the invention
下述实施例中所使用的实验方法如无特殊说明,均为常规方法。The experimental methods used in the following examples are conventional methods unless otherwise specified.
下述实施例中所用的材料、试剂等,如无特殊说明,均可从商业途径得到。The materials, reagents and the like used in the following examples are commercially available unless otherwise specified.
下述实施例中的HLA-A2/NLVPMVATV抗原复合物是指巨细胞病毒抗原肽NLVPMVATV与抗原分子HLA-A2的复合物,记载于文献“Stephen J.Forman etc,Development of a Candidate HLA A*0201 Restricted Peptide-Based Vaccine Against Human Cytomegalovirus Infection,Blood,Vol 90,No 5(September 1),1997:pp 1751-1767”和“Epitope Sequence Presented by the HLA Ap0201 Allele among Human Cytomegalovirus Isolates;Journal of Virology,Mar.2001,p.2472–2474”中,公众可从天津天锐生物科技有限公司获得。The HLA-A2/NLVPMVATV antigen complex in the following examples refers to a complex of the cytomegalovirus antigen peptide NLVPMVATV and the antigen molecule HLA-A2, which is described in the literature "Stephen J. Forman etc, Development of a Candidate HLA A*0201 Restricted Peptide-Based Vaccine Against Human Cytomegalovirus Infection, Blood, Vol 90, No 5 (September 1), 1997: pp 1751-1767" and "Epitope Sequence Presented by the HLA Ap0201 Allele among Human Cytomegalovirus Isolates; Journal of Virology, Mar. 2001, p.2472–2474”, the public is available from Tianjin Tianrui Biotechnology Co., Ltd.
实施例1筛选特异性结合HLA-A2/NLVPMVATV复合物的单域抗体Example 1 Screening for single domain antibodies that specifically bind to HLA-A2/NLVPMVATV complexes
1.1单域抗体噬菌体文库制备1.1 Single domain antibody phage library preparation
1.1.1辅助噬菌体(BM13)的制备1.1.1 Preparation of helper phage (BM13)
将M13KE噬菌体(购自NEB#N0316S)的复制子用AlwnI(购自NEB)和AfeI(购自NEB)双酶切,同时人工合成基因片段也用AlwnI和AfeI(购自NEB)双酶切,然后用T4连接酶连接在一起。连接后转染TG1得到辅助噬菌体BM13。如此,M13KE噬菌体的复制子中的如下序列:tctggtggtggttctggtggcggctctgagggtggtggctctgagggtggcggttctgagggtggcggctctgagggaggcggttccggtggtggctct被人工合成基因序列所取代,即在噬菌体GIII编码区域,添加了胰蛋白酶切割序列,一旦用作辅助噬菌体时,增加胰蛋白酶消化步骤,减少不含融合目的基因蛋白噬菌体的数目。The replicon of M13KE phage (purchased from NEB#N0316S) was digested with AlwnI (purchased from NEB) and AfeI (purchased from NEB), and the synthetic gene fragment was also digested with AlwnI and AfeI (purchased from NEB). They are then ligated together using T4 ligase. After ligation, TG1 was transfected to obtain helper phage BM13. Thus, the following sequence in the replicon of the M13KE phage: tctggtggtggttctggtggcggctctgagggtggtggctctgagggtggcggttctgagggtggcggctctgagggaggcggttccggtggtggctct is replaced by a synthetic gene sequence, in which a trypsin cleavage sequence is added to the phage GIII coding region, and once used as a helper phage, the trypsin digestion step is increased, and the decrease is not The number of phage containing the gene of interest fusion.
人工合成基因序列如下:CCA GCC GGC CTT TCT GAG GGG TCG ACT ATA GAA GGA CGA GGG GCC CAC GAA GGA GGT GGG GTA CCC GGT TCC GAG GGT。The synthetic gene sequences are as follows: CCA GCC GGC CTT TCT GAG GGG TCG ACT ATA GAA GGA CGA GGG GCC CAC GAA GGA GGT GGG GTA CCC GGT TCC GAG GGT.
1.1.2噬菌体文库构建1.1.2 phage library construction
1.1.2.1载体构建1.1.2.1 Carrier construction
将pUC19(购自NEB)用HindIII(购自NEB)和NdeI(购自NEB)双酶切,加入基于DP47抗体序列的重链人工单域抗体序列。单域抗体表达框架中,单域抗体与GIII蛋白融合,中间加入Myc和VSV-G标签,用于纯化或鉴定,构建成噬菌体展示载体pBG3。pUC19 (purchased from NEB) was digested with HindIII (purchased from NEB) and NdeI (purchased from NEB), and a heavy chain artificial single domain antibody sequence based on the DP47 antibody sequence was added. In the single domain antibody expression framework, the single domain antibody is fused to the GIII protein, and the Myc and VSV-G tags are added in the middle for purification or identification, and the phage display vector pBG3 is constructed.
1.1.2.2ssDNA模板制备1.1.2.2ssDNA template preparation
大肠杆菌菌株CJ236(购自NEB)缺乏功能性尿嘧啶脱氧核糖核苷三磷酸酶和尿嘧啶-N糖苷酶,可以产生尿嘧啶化单链DNA模板。将pBG3质粒转染进入CJ236并涂布在含Carbenicillin(50μg/ml)和chloramphenicol(15μg/ml)琼脂平板上,培养过夜。挑选平板上筛选出的单个菌落到3ml 2×TY肉汤培养基中(含上述同样浓度的双抗),在37℃,250rpm条件下培养过夜。次日取0.3ml过夜培养物加入30ml新鲜2×TY肉汤培养基中(Carbenicillin 50μg/ml),持续3-4小时培养,使OD600=0.4-0.6,加入辅助噬菌体(按细菌:噬菌体个数比为1:10的比例加入),在37℃,150rpm的条件下离心1小时,将细菌沉淀重悬于60ml 2×TY双抗培养基中,在25℃,250rpm的条件下培养22小时,离心弃沉淀。含噬菌体的上清液用5%PEG(PEG800和300mM NaCl调至浓度为5%)沉淀,然后重悬于PBS中,使用QIAprep Spin M13试剂盒(购自Qiagen)制备 出ssDNA。E. coli strain CJ236 (purchased from NEB) lacks functional uracil deoxyribonucleoside triphosphatase and uracil-N glycosidase to produce a uracilized single-stranded DNA template. The pBG3 plasmid was transfected into CJ236 and plated on agar plate containing Carbenicillin (50 μg/ml) and chloramphenicol (15 μg/ml) and cultured overnight. A single colony screened on the plate was selected into 3 ml of 2×TY broth medium (containing the same concentration of the above-mentioned double antibody), and cultured at 37 ° C, 250 rpm overnight. On the next day, 0.3 ml of the overnight culture was added to 30 ml of fresh 2×TY broth medium (Carbenicillin 50 μg/ml) for 3-4 hours, and the OD600 was 0.4-0.6, and the helper phage was added (by bacteria: number of phage) The ratio was 1:10, and the mixture was centrifuged at 37 ° C, 150 rpm for 1 hour, and the bacterial pellet was resuspended in 60 ml of 2 × TY double-antibody medium, and cultured at 25 ° C, 250 rpm for 22 hours. The precipitate was discarded by centrifugation. The phage-containing supernatant was precipitated with 5% PEG (PEG800 and 300 mM NaCl adjusted to a concentration of 5%), then resuspended in PBS, and ssDNA was prepared using QIAprep Spin M13 kit (purchased from Qiagen).
1.1.2.3文库制备1.1.2.3 Library preparation
1.1.2.3.1用KunKel方法制备如下CDR突变寡核苷酸链(由金唯智公司合成):1.1.2.3.1 The following CDR mutant oligonucleotide strands (synthesized by Jin Weizhi) were prepared by the KunKel method:
Olig_CDR1:Olig_CDR1:
Olig_CDR2:Olig_CDR2:
Olig_CDR3a:Olig_CDR3a:
Olig_CDR3b:Olig_CDR3b:
1.1.2.3.2寡核苷酸链的磷酸化1.1.2.3.2 Phosphorylation of Oligonucleotide Chains
将人工合成的寡核苷酸链加入100ul 50mM Tris-HCl(Tris碱购自索莱宝,用盐酸调PH至7.5可得)中,得到磷酸化体系,磷酸化体系含下列成份:5U T4多核苷酸激酶、10mM MgCl
2、1mM ATP及5mM DTT。将磷酸化体系在37℃反应1小时后,得到磷酸化的寡核苷酸。用PCR纯化试剂盒(购自天根)纯化磷酸化的寡核苷酸链。
The synthetic oligonucleotide strand was added to 100 ul of 50 mM Tris-HCl (Tris base was purchased from Soleil, adjusted to pH 7.5 with hydrochloric acid) to obtain a phosphorylation system containing the following components: 5 U T4 multinuclear Glycokinase, 10 mM MgCl 2 , 1 mM ATP and 5 mM DTT. After the phosphorylation system was reacted at 37 ° C for 1 hour, a phosphorylated oligonucleotide was obtained. The phosphorylated oligonucleotide strand was purified using a PCR purification kit (purchased from Tiangen).
1.1.2.3.3磷酸化的寡核苷酸与ssDNA退火结合1.1.2.3.3 phosphorylated oligonucleotides anneal to ssDNA
将磷酸化的寡核苷酸和Uracilated ssDNA(磷酸化寡核苷酸:ssDNA=3:1,ssDNA由1.1.2.2中制备所得)溶于含有10mM MgCl
2的50mM Tris-HCl缓冲液(pH为7.5)中,在90℃条件下加热2分钟后,以1℃/min的降速降至25℃,得到退火结合的磷酸化寡核苷酸与ssDNA复合物。
The phosphorylated oligonucleotide and Uracilated ssDNA (phosphorylated oligonucleotide: ssDNA=3:1, ssDNA prepared from 1.1.2.2) were dissolved in 50 mM Tris-HCl buffer (pH of 10 mM MgCl 2 ) . In 7.5), after heating at 90 ° C for 2 minutes, the temperature was lowered to 25 ° C at a rate of 1 ° C / min to obtain an annealing-bound phosphorylated oligonucleotide and ssDNA complex.
1.1.2.3.4dsDNA的合成1.1.2.3.4 Synthesis of dsDNA
将0.55mM ATP,0.8mM dNTPs,5mM DTT,15U T4DNA合成酶及15U T7DNA合成酶加入退火结合的磷酸化寡核苷酸与ssDNA复合物中,在20℃下保温3小时后,得到dsDNA。用Qiaquick PCR纯化试剂盒(购自Qiagen)纯化dsDNA。将纯化后的DNA转化至电转感受态TG1中。0.55 mM ATP, 0.8 mM dNTPs, 5 mM DTT, 15 U T4 DNA synthetase and 15 U T7 DNA synthetase were added to the annealing-bound phosphorylated oligonucleotide and the ssDNA complex, and after incubation at 20 ° C for 3 hours, dsDNA was obtained. The dsDNA was purified using Qiaquick PCR Purification Kit (purchased from Qiagen). The purified DNA was transformed into electrotransformed competent TG1.
1.2BM13辅助噬菌体以及噬菌体文库的增殖1.2BM13 helper phage and proliferation of phage library
1.2.1BM13辅助噬菌体的增殖1.2.1 proliferation of BM13 helper phage
从基本琼脂培养基平板上挑取一个大肠杆菌TG1(购于武汉淼灵)的新鲜单菌落,接种到20ml 2×TY培养基中,温和摇动,37℃条件下培养至OD600约为0.8备用。将1.1.1中制备的原始BM13辅助噬菌体用2×TY培养基制备一系列 10倍稀释的BM13噬菌体。各稀释度分别取10μl与200μl TG1(OD600=0.8)菌液混匀,振荡器温和震荡3s,并与上层琼脂培养基混匀,倾倒在预先平衡室温的TY平板上。转动平板以确保菌体和上层琼脂分布均匀。待上层培养基凝固后,于37℃生化培养箱倒置培养过夜。A fresh single colony of Escherichia coli TG1 (purchased from Wuhan Qiling) was picked from the basic agar medium plate, inoculated into 20 ml of 2×TY medium, and gently shaken, and cultured at 37 ° C until the OD600 was about 0.8. A series of 10-fold diluted BM13 phage were prepared from the original BM13 helper phage prepared in 1.1.1 using 2 x TY medium. Each dilution was mixed with 10 μl and 200 μl of TG1 (OD600=0.8), and the shaker was gently shaken for 3 s, mixed with the upper agar medium, and poured on a pre-equilibrated room temperature TY plate. Rotate the plate to ensure even distribution of the cells and the upper agar. After the supernatant medium was coagulated, it was cultured in an inverted culture at 37 ° C in a biochemical incubator overnight.
次日挑选分离良好的单个噬菌体接种于装有2~3ml含25μg/ml卡那霉素的2×TY培养基的15ml培养管中。在37℃,250rpm条件下震荡培养12~16h。将感染上清液转移至1.5ml无菌微量离心管,在微量离心机上,以最大转速,4℃离心2min。上清液转移至新管中4℃保存。The next day, a well-separated single phage was selected and inoculated into a 15 ml culture tube containing 2 to 3 ml of 2 x TY medium containing 25 μg/ml kanamycin. Incubate at 37 ° C, 250 rpm for 12 to 16 h. The infected supernatant was transferred to a 1.5 ml sterile microcentrifuge tube and centrifuged at 4 ° C for 2 min at maximum speed on a microfuge. The supernatant was transferred to a new tube and stored at 4 °C.
1.2.2噬菌体文库的增殖1.2.2 Proliferation of phage library
将制备好的噬菌体文库接种至100ml含60μg/ml氨苄青霉素的2×TY培养基中,在37℃,250rpm条件下震荡培养至OD600为0.8时,加入BM13至浓度为2×10
7pfu/ml。在37℃,300rpm条件下培养1h,加入25μg/ml卡那霉素,在37℃条件下继续培养14~18h。将菌液离心,上清液用5%PEG沉淀,然后重悬于5%MPBS中备用。
2 × TY medium the prepared phage library was inoculated into 100ml containing 60μg / ml ampicillin, at 37 ℃, 250rpm shaking culture conditions to an OD600 of 0.8, BM13 was added to a concentration of 2 × 10 7 pfu / ml . Incubate at 37 ° C, 300 rpm for 1 h, add 25 μg / ml kanamycin, continue to culture at 37 ° C for 14 ~ 18h. The bacterial solution was centrifuged, and the supernatant was precipitated with 5% PEG, and then resuspended in 5% MPBS for use.
1.3筛选特异性结合HLA-A2/NLVPMVATV复合物的单域抗体1.3 Screening for single domain antibodies that specifically bind to HLA-A2/NLVPMVATV complexes
1.3.1生物淘选1.3.1 Biopanning
链酶亲和素免疫磁珠(购自Invitrogen cat no.SKU#112-05D)取25μl,加入一定量的生物素化的HLA-A2/NLVPMVATV,室温结合5min。PBST及PBS洗2~3次。MPBS封闭2h,PBST及PBS洗2~3次。将噬菌体文库加入磁珠中,室温孵育2h。25 μl of streptavidin immunomagnetic beads (purchased from Invitrogen cat no. SKU #112-05D) was added to a quantity of biotinylated HLA-A2/NLVPMVATV for 5 min at room temperature. Wash PBST and PBS 2 or 3 times. MPBS was blocked for 2 h, washed with PBST and PBS for 2 to 3 times. The phage library was added to the magnetic beads and incubated for 2 h at room temperature.
移走未结合文库,磁珠用PBST及PBS各洗10次。向磁珠中加入0.01%胰酶溶液,室温孵育1H,得胰酶洗脱液。Unbound libraries were removed and magnetic beads were washed 10 times with PBST and PBS. 0.01% trypsin solution was added to the magnetic beads, and 1H was incubated at room temperature to obtain a trypsin eluate.
将胰酶洗脱液加入到30ml TG1(OD600=0.5)中,按1.2中方法增殖第一次洗脱文库。The trypsin eluate was added to 30 ml of TG1 (OD600 = 0.5), and the library was first eluted by the method of 1.2.
如此进行第二轮、第三轮淘选。挑取三轮淘选后所得的单菌落至96孔板中。按1.2中文库增殖方法制备出培养物上清液。This is the second round and the third round of panning. Single colonies obtained after three rounds of panning were picked into 96-well plates. The culture supernatant was prepared according to the 1.2 Chinese library proliferation method.
1.3.2ELISA鉴定1.3.2 ELISA identification
取一定量上清液做ELISA鉴定。见图1A和图2A。Take a certain amount of supernatant for ELISA. See Figure 1A and Figure 2A.
ELISA具体步骤如下:用包被缓冲液将已知抗原稀释至1~10μg/ml,每孔加0.1ml,4℃过夜;次日洗涤3次;加一定稀释的待检样品0.1ml于上述已包被之反应孔中,置37℃孵育1小时,洗涤;加入新鲜稀释的酶标第二抗体(辣根过氧化物酶HRP标记的抗噬菌体的抗体,1:5000)0.1ml,37℃孵育60分钟,洗涤;最后一遍用DDW洗涤。于各反应孔中加入临时配制的TMB底物溶液0.1ml,在37℃条件下静置10~30分钟。用高级读板机在650nm波长下读板。The specific steps of the ELISA are as follows: dilute the known antigen to 1 to 10 μg/ml with a coating buffer, add 0.1 ml per well, overnight at 4 ° C; wash 3 times a day; add 0.1 ml of the sample to be tested to the above In the coated reaction well, incubate at 37 ° C for 1 hour, wash; add freshly diluted enzyme-labeled secondary antibody (horseradish peroxidase HRP-labeled anti-phage antibody, 1:5000) 0.1 ml, incubate at 37 ° C Wash for 60 minutes; wash with DDW for the last time. 0.1 ml of a temporarily prepared TMB substrate solution was added to each reaction well, and allowed to stand at 37 ° C for 10 to 30 minutes. The plate was read at a wavelength of 650 nm using an advanced plate reader.
ELISA鉴定的结果如图1A和图2A所示,各孔光吸收值如图1B和图2B所示。其中,A:ELISA所有孔均包被抗原HLA-A2/NLVPMVATV;每孔中抗体各不相同。B:数据分析,纵坐标为各孔在650nm下的光吸收值,横坐标为96个孔, 其中,1-8为A1、B1、C1、D1、E1、F1、G1、H1,9-16为A2、B2、C2、D2、E2、F2、G2、H2,依次类推,89-96为A12、B12、C12、D12、E12、F12、G12、H12。The results of ELISA identification are shown in Figures 1A and 2A, and the light absorption values of the respective wells are shown in Figures 1B and 2B. Among them, all wells of A: ELISA were coated with antigen HLA-A2/NLVPMVATV; the antibodies in each well were different. B: Data analysis, the ordinate is the light absorption value of each hole at 650 nm, and the abscissa is 96 holes, wherein 1-8 are A1, B1, C1, D1, E1, F1, G1, H1, 9-16 For A2, B2, C2, D2, E2, F2, G2, H2, and so on, 89-96 is A12, B12, C12, D12, E12, F12, G12, H12.
选择图1和2中A650nm在0.8以上的克隆进行测序,得到多个不同的氨基酸序列。将SEQ ID No.7所示的氨基酸序列对应的克隆命名为M4-F4,其对应的单域抗体为单域抗体M4-F4;将SEQ ID No.8所示的氨基酸序列对应的克隆命名为M4-G5,其对应的单域抗体为单域抗体M4-G5。Clones with A650nm above 0.8 in Figures 1 and 2 were selected for sequencing to obtain a plurality of different amino acid sequences. The clone corresponding to the amino acid sequence shown in SEQ ID No. 7 was named M4-F4, and the corresponding single domain antibody was a single domain antibody M4-F4; the clone corresponding to the amino acid sequence shown in SEQ ID No. 8 was named M4-G5, the corresponding single domain antibody is a single domain antibody M4-G5.
单域抗体M4-F4的氨基酸序列如SEQ ID No.7所示,编码基因序列如SEQ ID No.9所示。其中,单域抗体M4-F4的互补决定区CDR1的氨基酸序列如SEQ ID No.1所示、互补决定区CDR2的氨基酸序列如SEQ ID No.2所示、互补决定区CDR3的氨基酸序列如SEQ ID No.3所示。The amino acid sequence of the single domain antibody M4-F4 is shown in SEQ ID No. 7, and the coding gene sequence is shown in SEQ ID No. 9. Wherein, the amino acid sequence of the CDR1 of the complementarity determining region of the single domain antibody M4-F4 is as shown in SEQ ID No. 1, the amino acid sequence of the CDR2 of the complementarity determining region is as shown in SEQ ID No. 2, and the amino acid sequence of the CDR3 of the complementarity determining region is SEQ. ID No.3 is shown.
单域抗体M4-G5的氨基酸序列如SEQ ID No.8所示,编码基因序列如SEQ ID No.10所示。其中,互补决定区CDR1的氨基酸序列如SEQ ID No.4所示、互补决定区CDR2的氨基酸序列如SEQ ID No.5所示、互补决定区CDR3的氨基酸序列如SEQ ID No.6所示。The amino acid sequence of the single domain antibody M4-G5 is shown in SEQ ID No. 8, and the coding gene sequence is shown in SEQ ID No. 10. Wherein, the amino acid sequence of the complementarity determining region CDR1 is set forth in SEQ ID No. 4, the amino acid sequence of the complementarity determining region CDR2 is set forth in SEQ ID No. 5, and the amino acid sequence of the complementarity determining region CDR3 is set forth in SEQ ID No. 6.
两种不同单域抗体:单域抗体M4-F4和单域抗体M4-G5对不同抗原的特异性和亲和力的ELISA鉴定结果如图3A。加入TMB 20min后用高级读板机在650nm波长下读板,数据整理如图3B。The results of ELISA identification of the specificity and affinity of two different single domain antibodies: single domain antibody M4-F4 and single domain antibody M4-G5 for different antigens are shown in Figure 3A. After TMB was added for 20 min, the plate was read at a wavelength of 650 nm using an advanced plate reader, and the data was organized as shown in Fig. 3B.
其中,图3A中ELISA酶标板A、B两行包被抗原HLA-A2/ITDQVPFSV,C、D两行包被抗原HLA-A2/NLVPMVATV,E、F两行包被抗原HLA-A2/RMFPNAPYL,G、H两行包被抗原HLA-A2/SLLMWITQC;每个孔中所加入的单域抗体均以培养上清液的形式加入。其中,Line 1的八个孔中的孵育一抗均为M4-F4,line 2为HLA-A2/RMFPNAPYL的抗体,做阳性对照(M5对照1);line 3为某一个对四种抗原有交叉反应的抗体MA(MA对照2);line 4为M4-G5。每种抗体对一种抗原的亲和检测反应均有两个重复孔。图3B为数据分析,纵坐标为650nm下的光吸收值,图中显示A650均为两个重复孔的平均值,横坐标1,2,3和4为HLA-A2/ITDQVPFSV抗原、HLA-A2/NLVPMVATV抗原、HLA-A2/RMFPNAPYL抗原和HLA-A2/SLLMWITQC抗原。a,b,c,d依次为M4-F4、M5对照1、MA对照2和M4-G5。Among them, in Figure 3A, the two rows of ELISA plate A and B were coated with antigen HLA-A2/ITDQVPFSV, C and D were coated with antigen HLA-A2/NLVPMVATV, and E and F were coated with antigen HLA-A2/RMFPNAPYL. The two lines of G and H were coated with the antigen HLA-A2/SLLMWITQC; the single domain antibody added to each well was added as a culture supernatant. Among them, the first antibody in the eight wells of Line 1 was M4-F4, the line 2 was the antibody of HLA-A2/RMFPNAPYL, and the positive control (M5 control 1); the line 3 was one for the four antigens. The reacted antibody MA (MA control 2); line 4 is M4-G5. Each antibody has two replicate wells for the affinity detection reaction of one antigen. Figure 3B shows the data analysis. The ordinate is the absorbance at 650 nm. The graph shows that A650 is the average of two replicate wells. The abscissas 1, 2, 3 and 4 are HLA-A2/ITDQVPFSV antigen, HLA-A2. /NLVPMVATV antigen, HLA-A2/RMFPNAPYL antigen and HLA-A2/SLLMWITQC antigen. a, b, c, d are in turn M4-F4, M5 control 1, MA control 2 and M4-G5.
结果显示筛选得到阳性克隆M4-F4和M4-G5均对HLA-A2/NLVPMVATV表现特异性高亲和力,对其它三个抗原基本不结合。The results showed that the positive clones M4-F4 and M4-G5 showed high specific affinity for HLA-A2/NLVPMVATV, and did not bind to the other three antigens.
实施例2融合蛋白M4-G5-Fc的制备Example 2 Preparation of Fusion Protein M4-G5-Fc
1、重组载体的构建1. Construction of recombinant vector
将SEQ ID No.11所示的DNA分子(其包括Kozak序列及信号肽、M4-G5抗体序列、人源Fc序列及标签序列)克隆到pcDNA3.1的HindⅢ和XbaI限制性内切酶位点间,得到重组载体pcDNA3.1-sdAb-Fc,其结构如图4所示。Cloning of the DNA molecule set forth in SEQ ID No. 11 (which includes the Kozak sequence and the signal peptide, the M4-G5 antibody sequence, the human Fc sequence and the tag sequence) into the HindIII and XbaI restriction endonuclease sites of pcDNA3.1 The recombinant vector pcDNA3.1-sdAb-Fc was obtained, and its structure is shown in Fig. 4.
2、重组细胞的构建及培养2. Construction and culture of recombinant cells
将重组载体pcDNA3.1-sdAb-Fc瞬时转染到293F细胞(ThermoFi sher,A14527)中,培养4天后离心,收集上清液,并用Protein A纯化。The recombinant vector pcDNA3.1-sdAb-Fc was transiently transfected into 293F cells (ThermoFiherer, A14527), cultured for 4 days, centrifuged, and the supernatant was collected and purified with Protein A.
3、M4-G5-Fc融合蛋白的鉴定3. Identification of M4-G5-Fc fusion protein
M4-G5-Fc融合蛋白纯化后跑SDS-PAG,结果见图5。其中,图5A为融合蛋白M4-G5-Fc的还原电泳图,图5B为融合蛋白M4-G5-Fc非还原电泳图。Marker的条带从小到大依次为14,25,30,40,50,70,100,120,160KD。Line1为还原态M4-G5-Fc,大约43KD,Line2为非还原态M4-G5-Fc,大约100KD。The M4-G5-Fc fusion protein was purified and ran SDS-PAG. The results are shown in Fig. 5. 5A is a reduced electrophoresis pattern of the fusion protein M4-G5-Fc, and FIG. 5B is a non-reduced electrophoresis pattern of the fusion protein M4-G5-Fc. Marker's strips are from 14, 25, 30, 40, 50, 70, 100, 120, 160 KD. Line 1 is a reduced state M4-G5-Fc, approximately 43 KD, and Line 2 is a non-reduced M4-G5-Fc, approximately 100 KD.
实施例3融合蛋白M4-G5-Fc特异性识别HLA-A2/NLVPMVATV复合物Example 3 Fusion Protein M4-G5-Fc specifically recognizes HLA-A2/NLVPMVATV complex
ELISA检测融合蛋白M4-G5-Fc对不同抗原的特异性结合情况。检测方法同实施例1中的1.3.2。The specific binding of the fusion protein M4-G5-Fc to different antigens was detected by ELISA. The detection method is the same as 1.3.2 in Example 1.
结果如图6所示。其中,纵坐标为650nm下的光吸收值,横坐标1,2,3和4分别为HLA-A2/ITDQVPFSV抗原、HLA-A2/NLVPMVATV抗原、HLA-A2/RMFPNAPYL抗原和HLA-A2/SLLMWITQC抗原。样品为纯化后的融合蛋白M4-G5-Fc,BM为HLA-A2/RMFPNAPYL的一种抗体,做阳性对照。结果显示:融合蛋白M4-G5-Fc对HLA-A2/NLVPMVATV表现较高亲和力,对其它三个抗原基本不结合。The result is shown in Figure 6. Among them, the ordinate has a light absorption value at 650 nm, and the abscissas 1, 2, 3 and 4 are HLA-A2/ITDQVPFSV antigen, HLA-A2/NLVPMVATV antigen, HLA-A2/RMFPNAPYL antigen and HLA-A2/SLLMWITQC antigen, respectively. . The sample was a purified fusion protein M4-G5-Fc, and BM was an antibody of HLA-A2/RMFPNAPYL as a positive control. The results showed that the fusion protein M4-G5-Fc showed higher affinity for HLA-A2/NLVPMVATV and did not bind to the other three antigens.
以上通过实施例对本发明进行了详细说明,但所述内容仅为本发明的示例性实施例,不能被认为用于限定本发明的实施范围。本发明的保护范围由权利要求书限定。凡利用本发明所述的技术方案,或本领域的技术人员在本发明技术方案的启发下,在本发明的实质和保护范围内,设计出类似的技术方案而达到上述技术效果的,或者对申请范围所作的均等变化与改进等,均应仍归属于本发明的专利涵盖保护范围之内。The present invention has been described in detail by way of example only, and is not intended to limit the scope of the invention. The scope of the invention is defined by the claims. In the light of the technical solutions of the present invention, or by those skilled in the art, within the spirit and scope of the present invention, a similar technical solution is designed to achieve the above technical effects, or Equivalent changes and improvements in the scope of application shall remain within the scope of protection covered by the patents of the present invention.
工业应用Industrial application
本发明提供了一种可特异性识别HLA-A2/NLVPMVATV复合物的单域抗体及其特异性识别作用的CDR1、CDR2和CDR3氨基酸序列。本发明还基于这种抗体提供了可特异性识别HLA-A2/NLVPMVATV复合物的融合蛋白以及在生物医学领域的应用。本发明所筛选得到的单域抗体可开发成治疗巨细胞病毒的抗体药及其他有益产品,对于治疗巨细胞病毒引起的疾病具有重要意义。The present invention provides a single domain antibody that specifically recognizes the HLA-A2/NLVPMVATV complex and its CDR1, CDR2 and CDR3 amino acid sequences for specific recognition. The present invention is also based on the provision of a fusion protein that specifically recognizes the HLA-A2/NLVPMVATV complex and its use in the biomedical field. The single domain antibody screened by the present invention can be developed into an antibody drug and other beneficial products for treating cytomegalovirus, and is important for treating diseases caused by cytomegalovirus.
Claims (15)
- 一种识别HLA-A2/NLVPMVATV的单域抗体,所述单域抗体包括互补决定区CDR1、互补决定区CDR2和互补决定区CDR3,所述单域抗体为如下(a)或(b):A single domain antibody recognizing HLA-A2/NLVPMVATV, comprising a complementarity determining region CDR1, a complementarity determining region CDR2 and a complementarity determining region CDR3, wherein the single domain antibody is as follows (a) or (b):(a)所述单域抗体的互补决定区CDR1为如下(a1)或(a2)或(a3):(a) The complementarity determining region CDR1 of the single domain antibody is as follows (a1) or (a2) or (a3):(a1)包括SEQ ID No.1所示的氨基酸序列;(a1) comprising the amino acid sequence of SEQ ID No. 1;(a2)SEQ ID No.1所示的氨基酸序列;(a2) the amino acid sequence of SEQ ID No. 1;(a3)将SEQ ID No.1所示的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加得到的具有相同功能的氨基酸序列;(a3) an amino acid sequence having the same function obtained by subjecting the amino acid sequence represented by SEQ ID No. 1 to substitution and/or deletion and/or addition of one or several amino acid residues;所述单域抗体的互补决定区CDR2为如下(a4)或(a5)或(a6):The complementarity determining region CDR2 of the single domain antibody is as follows (a4) or (a5) or (a6):(a4)包括SEQ ID No.2所示的氨基酸序列;(a4) comprising the amino acid sequence shown in SEQ ID No. 2;(a5)SEQ ID No.2所示的氨基酸序列;(a5) the amino acid sequence shown in SEQ ID No. 2;(a6)将SEQ ID No.2所示的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加得到的具有相同功能的氨基酸序列;(a6) an amino acid sequence having the same function obtained by subjecting the amino acid sequence represented by SEQ ID No. 2 to substitution and/or deletion and/or addition of one or several amino acid residues;所述单域抗体的互补决定区CDR3为如下(a7)或(a8)或(a9):The complementarity determining region CDR3 of the single domain antibody is as follows (a7) or (a8) or (a9):(a7)包括SEQ ID No.3所示的氨基酸序列;(a7) comprising the amino acid sequence shown in SEQ ID No. 3;(a8)SEQ ID No.3所示的氨基酸序列;(a8) an amino acid sequence of SEQ ID No. 3;(a9)将SEQ ID No.3所示的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加得到的具有相同功能的氨基酸序列;(a9) an amino acid sequence having the same function obtained by subjecting the amino acid sequence represented by SEQ ID No. 3 to substitution and/or deletion and/or addition of one or several amino acid residues;(b)所述单域抗体的互补决定区CDR1为如下(b1)或(b2)或(b3):(b) The complementarity determining region CDR1 of the single domain antibody is as follows (b1) or (b2) or (b3):(b1)包括SEQ ID No.4所示的氨基酸序列;(b1) comprising the amino acid sequence shown in SEQ ID No. 4;(b2)SEQ ID No.4所示的氨基酸序列;(b2) an amino acid sequence represented by SEQ ID No. 4;(b3)将SEQ ID No.4所示的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加得到的具有相同功能的氨基酸序列;(b3) an amino acid sequence having the same function obtained by subjecting the amino acid sequence represented by SEQ ID No. 4 to substitution and/or deletion and/or addition of one or several amino acid residues;所述单域抗体的互补决定区CDR2为如下(b4)或(b5)或(b6):The complementarity determining region CDR2 of the single domain antibody is as follows (b4) or (b5) or (b6):(b4)包括SEQ ID No.5所示的氨基酸序列;(b4) comprising the amino acid sequence of SEQ ID No. 5;(b5)SEQ ID No.5所示的氨基酸序列;(b5) an amino acid sequence of SEQ ID No. 5;(b6)将SEQ ID No.5所示的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加得到的具有相同功能的氨基酸序列;(b6) an amino acid sequence having the same function obtained by subjecting the amino acid sequence represented by SEQ ID No. 5 to substitution and/or deletion and/or addition of one or several amino acid residues;所述单域抗体的互补决定区CDR3为如下(b7)或(b8)或(a9):The complementarity determining region CDR3 of the single domain antibody is as follows (b7) or (b8) or (a9):(b7)包括SEQ ID No.6所示的氨基酸序列;(b7) comprising the amino acid sequence of SEQ ID No. 6;(b8)SEQ ID No.6所示的氨基酸序列;(b8) the amino acid sequence of SEQ ID No. 6;(b9)将SEQ ID No.6所示的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加得到的具有相同功能的氨基酸序列。(b9) An amino acid sequence having the same function obtained by subjecting the amino acid sequence represented by SEQ ID No. 6 to substitution and/or deletion and/or addition of one or several amino acid residues.
- 根据权利要求1所述的单域抗体,其特征在于:所述单域抗体为如下(c1)或(c2):The single domain antibody according to claim 1, wherein the single domain antibody is as follows (c1) or (c2):(c1)SEQ ID No.7或SEQ ID No.8所示的氨基酸序列;(c1) the amino acid sequence of SEQ ID No. 7 or SEQ ID No. 8;(c2)将SEQ ID No.7或SEQ ID No.8所示的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加得到的具有相同功能的氨基酸序列。(c2) An amino acid sequence having the same function obtained by subjecting the amino acid sequence represented by SEQ ID No. 7 or SEQ ID No. 8 to substitution and/or deletion and/or addition of one or several amino acid residues.
- 权利要求1或2所述的单域抗体的衍生物,为如下(d1)-(d9)中任一种:The derivative of the single domain antibody according to claim 1 or 2, which is any one of the following (d1) to (d9):(d1)由权利要求1或2所述的单域抗体与至少1个具治疗或识别功能的多肽分子制备而成的融合蛋白;(d1) a fusion protein prepared by the single domain antibody of claim 1 or 2 and at least one polypeptide molecule having therapeutic or recognition function;(d2)含有权利要求1或2所述的单域抗体的多特异或多功能分子;(d2) a multispecific or multifunctional molecule comprising the single domain antibody of claim 1 or 2;(d3)含有权利要求1或2所述的单域抗体的组合物;(d3) a composition comprising the single domain antibody of claim 1 or 2;(d4)含有权利要求1或2所述的单域抗体的免疫偶联物;(d4) an immunoconjugate comprising the single domain antibody of claim 1 or 2;(d5)将权利要求1或2所述的单域抗体或其抗原结合部分进行修饰和/或改造后得到的抗体;(d5) an antibody obtained by modifying and/or modifying the single domain antibody or antigen-binding portion thereof according to claim 1 or 2;(d6)含有权利要求1中所述的互补决定区的重链变区或轻链变区;(d6) a heavy chain variable region or a light chain variable region comprising the complementarity determining region of claim 1;(d7)含有权利要求1中所述的互补决定区的scFv或抗体;(d7) an scFv or antibody comprising the complementarity determining region of claim 1;(d8)含有权利要求1中所述的互补决定区中的一个或者两个或者两个以上的氨基酸序列,且至少与一个互补决定区的氨基酸序列具有至少79%同源性;(d8) comprising one or two or more amino acid sequences of the complementarity determining regions of claim 1, and having at least 79% homology with an amino acid sequence of one complementarity determining region;(d9)含有权利要求1或2所述的单域抗体的框架区中的一个或者两个或者两个以上的氨基酸序列,且至少与一个框架区的氨基酸序列具有至少90%同源性。(d9) one or two or more amino acid sequences in the framework region of the single domain antibody according to claim 1 or 2, and having at least 90% homology with the amino acid sequence of one framework region.
- 根据权利要求3所述的衍生物,其特征在于:The derivative according to claim 3, characterized in that:所述融合蛋白是将权利要求1或2所述的单域抗体与至少1个具治疗或识别功能的多肽分子直接融合得到的,或通过接头肽与1个或1个以上的具治疗或识别功能的多肽分子连接得到的。The fusion protein is obtained by directly fusing the single domain antibody of claim 1 or 2 with at least one polypeptide molecule having therapeutic or recognition function, or by treating or recognizing one or more peptides with a linker peptide. Functional peptide molecules are obtained by ligation.
- 根据权利要求4所述的衍生物,其特征在于:The derivative according to claim 4, characterized in that:所述具治疗或识别功能的多肽分子为人源Fc蛋白。The polypeptide molecule having therapeutic or recognition function is a human Fc protein.
- 根据权利要求3所述的衍生物,其特征在于:The derivative according to claim 3, characterized in that:所述免疫偶联物含有药学上可接受的载体。The immunoconjugate comprises a pharmaceutically acceptable carrier.
- 与权利要求1或2所述的单域抗体或权利要求3-6任一所述的衍生物相关的生物材料,为如下(e1)-(e4)中任一种:The biomaterial related to the single domain antibody according to claim 1 or 2 or the derivative according to any one of claims 3 to 6 is any one of the following (e1) to (e4):(e1)编码权利要求1或2所述的单域抗体的核酸分子;(e1) a nucleic acid molecule encoding the single domain antibody of claim 1 or 2;(e2)编码权利要求3中所述的融合蛋白的核酸分子;(e2) a nucleic acid molecule encoding the fusion protein of claim 3;(e3)含有(e1)或(e2)所述的核酸分子的载体;(e3) a vector comprising the nucleic acid molecule of (e1) or (e2);(e4)含有(e1)或(e2)所述的核酸分子或(e3)所述的载体的宿主细胞。(e4) A host cell comprising the nucleic acid molecule of (e1) or (e2) or the vector of (e3).
- 根据权利要求7所述的生物材料,其特征在于:The biomaterial according to claim 7, wherein:所述核酸分子为如下(f1)-(f3)中任一种:The nucleic acid molecule is any one of the following (f1) to (f3):(f1)SEQ ID No.9或SEQ ID No.10或SEQ ID No.11所示的DNA分子;(f1) a DNA molecule represented by SEQ ID No. 9 or SEQ ID No. 10 or SEQ ID No. 11;(f2)与(f1)限定的核苷酸序列具有75%或75%以上同一性,且编码权利要求1或2所述的单域抗体或权利要求3中所述的融合蛋白的DNA分子;(f2) a DNA molecule having 75% or more of the identity of the nucleotide sequence defined by (f1), and encoding the single domain antibody of claim 1 or 2 or the fusion protein of claim 3.(f3)在严格条件下与(f1)或(f2)限定的核苷酸序列杂交,且编码权利要求1或2所述的单域抗体或权利要求3中所述的融合蛋白的DNA分子。(f3) a DNA molecule which hybridizes under stringent conditions to a nucleotide sequence defined by (f1) or (f2) and which encodes the single domain antibody of claim 1 or 2 or the fusion protein of claim 3.
- 权利要求1或2所述的单域抗体或权利要求3-6任一所述的衍生物或权利要求7或8所述的生物材料在如下(g1)-(g4)中任一种中的应用:The single domain antibody according to claim 1 or 2 or the derivative according to any one of claims 3 to 6 or the biological material according to claim 7 or 8 in any one of the following (g1) to (g4) application:(g1)特异性识别和/或结合HLA-A2/NLVPMVATV;(g1) specifically recognizing and/or binding to HLA-A2/NLVPMVATV;(g2)制备特异性识别和/或结合HLA-A2/NLVPMVATV的产品;(g2) preparing a product that specifically recognizes and/or binds to HLA-A2/NLVPMVATV;(g3)治疗巨细胞病毒引起的疾病;(g3) treating diseases caused by cytomegalovirus;(g4)制备治疗巨细胞病毒引起的疾病的产品。(g4) A product for treating a disease caused by cytomegalovirus.
- 根据权利要求9所述的应用,其特征在于:所述产品为药物。The use according to claim 9, wherein the product is a medicament.
- 权利要求3中所述的融合蛋白的制备方法,包括如下步骤:将权利要求1或2所述的单域抗体的编码基因和人源Fc蛋白的编码基因导入宿主细胞,得到重组细胞;培养所述重组细胞,得到所述融合蛋白。The method for producing a fusion protein according to claim 3, comprising the steps of: introducing the gene encoding the single domain antibody of claim 1 or 2 and the gene encoding the human Fc protein into a host cell to obtain a recombinant cell; The recombinant cells are described to obtain the fusion protein.
- 根据权利要求11所述的方法,其特征在于:所述单域抗体的编码基因和所述人源Fc蛋白的编码基因是通过重组载体导入宿主细胞;The method according to claim 11, wherein the gene encoding the single domain antibody and the gene encoding the human Fc protein are introduced into a host cell by a recombinant vector;所述重组载体为将含有所述单域抗体的编码基因和所述人源Fc蛋白的编码基因的片段插入表达载体的多克隆位点中得到的。The recombinant vector is obtained by inserting a gene encoding the single domain antibody and a fragment encoding the human Fc protein into a multiple cloning site of an expression vector.
- 根据权利要求12所述的方法,其特征在于:所述含有所述单域抗体的编码基因和所述人源Fc蛋白的编码基因的片段为SEQ ID No.11所示的DNA分子。The method according to claim 12, wherein the gene encoding the single domain antibody and the gene encoding the human Fc protein are the DNA molecule of SEQ ID No. 11.
- 根据权利要求12所述的方法,其特征在于:所述表达载体为pcDNA3.1。The method according to claim 12, wherein the expression vector is pcDNA3.1.
- 根据权利要求11或12所述的方法,其特征在于:所述宿主细胞为293F细胞。The method according to claim 11 or 12, wherein the host cell is a 293F cell.
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