WO2023273595A1 - Antibody binding to trop2, bispecific antibody targeting trop2 and cd3, preparation methods therefor and uses thereof - Google Patents

Antibody binding to trop2, bispecific antibody targeting trop2 and cd3, preparation methods therefor and uses thereof Download PDF

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WO2023273595A1
WO2023273595A1 PCT/CN2022/090939 CN2022090939W WO2023273595A1 WO 2023273595 A1 WO2023273595 A1 WO 2023273595A1 CN 2022090939 W CN2022090939 W CN 2022090939W WO 2023273595 A1 WO2023273595 A1 WO 2023273595A1
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amino acid
acid sequence
seq
sequence shown
antibody
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袁清安
白丽莉
孟庆武
李艺嘉
赵立坤
李延虎
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益科思特(北京)医药科技发展有限公司
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Definitions

  • the invention relates to the technical field of genetic engineering antibodies, in particular to an antibody binding to TROP2, a bispecific antibody targeting TROP2 and CD3, and a preparation method and application thereof.
  • Antibody drugs are biomacromolecular drugs prepared by antibody engineering technology based on cell engineering technology and genetic engineering technology. They have the advantages of high specificity, uniform properties, and directional preparation for specific targets. Monoclonal antibodies are mainly used clinically in the following three aspects: tumor treatment, immune disease treatment and anti-infection treatment. Among them, tumor treatment is currently the most widely used field of monoclonal antibodies. Among the monoclonal antibody products that have entered clinical trials and are on the market, the number of products used for tumor treatment accounts for about 50%. Monoclonal antibody treatment of tumors is an immunotherapy that stimulates the immune system to kill target cells against specific targets of diseased cells. In order to enhance the effector function of antibodies, especially to improve the effect of killing tumor cells, people have tried various methods to modify antibody molecules.
  • the traditional hybridoma technology immunizes mice or rats, fuses the spleen cells with myeloma cells, then dilutes them (to one cell per well) and cultures them, and uses enzyme-linked immunosorbent assay (ELISA) to detect the difference between the supernatant of hybridoma cells and Immunizing the combination of antigens, and then screening monoclonal cell lines that can secrete antibodies that specifically bind to antigens. If this mouse-derived antibody is used in clinical drug development, it needs to be deimmunized by genetic engineering methods such as hybrid antibody technology (chimerization) and humanization technology (humanization).
  • ELISA enzyme-linked immunosorbent assay
  • the transgenic mouse technology replaces the variable region of the mouse antibody with the variable region of the human antibody, so that the variable region sequence of the monoclonal antibody obtained
  • the main body is human, and then the constant region can be further replaced to obtain a fully human monoclonal antibody.
  • Another technology is the phage display technology. Phage surface display technology is to construct engineered antibodies in test tubes, usually in the form of single-chain antibodies or Fabs. However, the gene fragments that make up engineered antibodies are derived from the gene pool of human immune cells, so the antibodies obtained are fully human. Antibodies obtained by multiple phage technologies have entered clinical research or been approved for the treatment of various diseases.
  • new antibody drugs based on monoclonal antibodies include drug-conjugated antibodies (Antibody drug conjugate, ADC), bispecific antibodies (bispecific antibodies,
  • ADC Antibody drug conjugate
  • bispecific antibodies bispecific antibodies
  • CAR-T chimeric antigen receptor T cells
  • the cell-bridging double antibody based on bispecificity has significantly improved the killing activity and specificity due to its ability to connect immune T cells and cancer target cells, and has a breakthrough clinical value. Much attention.
  • Bispecific antibodies can be obtained in a variety of ways, and their preparation methods mainly include: chemical coupling method, hybrid-hybridoma method and genetic engineering antibody preparation method.
  • the chemical coupling method is to link two different monoclonal antibodies together by chemical coupling to prepare a bispecific monoclonal antibody, which is the earliest bispecific monoclonal antibody.
  • the hybrid-hybridoma method is to produce bispecific monoclonal antibodies by means of cell hybridization or ternary hybridomas. These cell hybridomas or ternary hybridomas are fused by established hybridomas, or established hybridomas and hybridomas derived from mice The fusion of lymphocytes can only be used to produce murine bispecific antibodies, so its application is greatly limited.
  • bispecific microbodies mainly including bispecific microbodies, diabodies, and single-chain diabodies.
  • multivalent bispecific antibody four categories multivalent bispecific antibody four categories.
  • genetically engineered bispecific antibody drugs have entered the clinical trial stage in the world, and have shown good application prospects.
  • Trophoblastic cell surface antigen 2 is a cell surface glycoprotein encoded and expressed by the TACSTD2 gene, also known as tumor-associated calcium ion signal transducer 2 (TACSTD2), epidermal glycoprotein 1 (EGP-1), gastrointestinal tumor-related Antigen (GA733-1), surface marker 1 (M1S1), the first cell surface glycoprotein identified in human placental trophoblast, was later found to be highly expressed in most human solid tumor cancer cells, and only limited or Limited expression in normal human tissues.
  • TROP2 belongs to the GA733 protein family, and has a high structural sequence similarity with epithelial cell adhesion molecule (EpCAM, also known as TROP1, TACSTD1), with a homology of 49%.
  • TROP2 consists of 323 amino acids, including 26 amino acids in the signal peptide, 248 amino acids in the extracellular region, 23 amino acids in the transmembrane region, and 26 amino acids in the cytoplasmic region.
  • the schematic diagram of its structure is shown in Figure 1A.
  • TROP2 mainly promotes the growth, proliferation and metastasis of tumor cells by regulating calcium ion signaling pathways, cell cycle protein expression and reducing fibronectin adhesion. TROP2 can also interact with ⁇ -catenin in the Wnt signaling cascade, thus acting on the transcription of nuclear oncogenes and cell proliferation.
  • TROP2 is overexpressed in epithelial cancers such as breast cancer, pancreatic cancer, gallbladder cancer, colon cancer, gastric cancer, non-small cell lung cancer, prostate cancer, uterine cancer and oral squamous cell carcinoma, while it is normal in adults.
  • epithelial cancers such as breast cancer, pancreatic cancer, gallbladder cancer, colon cancer, gastric cancer, non-small cell lung cancer, prostate cancer, uterine cancer and oral squamous cell carcinoma, while it is normal in adults.
  • epithelial cancers such as breast cancer, pancreatic cancer, gallbladder cancer, colon cancer, gastric cancer, non-small cell lung cancer, prostate cancer, uterine cancer and oral squamous cell carcinoma, while it is normal in adults.
  • TROP2 has become an attractive target in tumor molecular targeted therapy.
  • TROP2 is a transmembrane protein whose extracellular domain is widely distributed on a variety of tumor cells, making it a natural candidate for targeted therapy.
  • the limited tissue expression of TROP2 reduces the toxicity of treatment, which is also the advantage of targeting TROP2 therapy.
  • Various forms of drugs, such as antibodies targeting TROP2, antibody conjugates, and drug combinations, are under development.
  • the utility of anti-TROP2 antibodies conjugated to other chemotherapeutic agents has been demonstrated in various preclinical studies.
  • the antibody drug conjugate (ADC) IMMU-132 for the treatment of TROP2-overexpressing epithelial malignancies has been approved by the FDA (April 2020).
  • the new antibody-conjugated drug Sacituzumab govitecan (IMMU-132) is based on TROP2 as the target, and the humanized antibody hRS7 is used as the targeting carrier to couple with the active metabolite SN38 of irinotecan, which can be used to treat a variety of epithelial malignant tumors Such as breast cancer (triple negative breast cancer), ovarian cancer, small cell lung cancer, etc.
  • the CD3 molecule on the surface of T cells consists of four subunits ⁇ , ⁇ , ⁇ , and ⁇ , with molecular masses of 18.9kDa, 23.1kDa, 20.5kDa, and 18.7kDa, and lengths of 171, 207, 182, and 164, respectively.
  • Amino acid residues, which together form 6 peptide chains, are often tightly combined with T cell receptor (TCR) to form a TCR-CD3 complex containing 8 peptide chains.
  • TCR T cell receptor
  • the schematic diagram of its structure is shown in Figure 1B. This complex has the functions of T cell activation, signal transduction and stable TCR structure.
  • CD3 cytoplasm contains immunoreceptor tyrosine-based activation motif (immunoreceptor tyrosine-based activation motif, ITAM), TCR recognizes and binds the antigenic peptide presented by MHC (major histo-compatibility complex) molecules, resulting in the activation of CD3 ITAM
  • ITAM immunoreceptor tyrosine-based activation motif
  • MHC major histo-compatibility complex
  • the phosphorylation of ITAM and the combination with ZAP-70 is one of the important biochemical reactions in the early stage of T cell activation signal transduction process. Therefore, the function of the CD3 molecule is to transduce the activation signal generated by the recognition of the antigen by the TCR. Based on the function of CD3, it is of great significance to develop a bispecific antibody that can be used for immunotherapy and simultaneously binds TROP2 and CD3.
  • the first object of the present invention is to provide a TROP2-binding antibody and its active fragment.
  • the second object of the present invention is to provide bispecific antibodies and active fragments thereof that bind to TROP2 and CD3.
  • the third object of the present invention is to provide nucleic acids encoding TROP2 antibodies and bispecific antibodies binding to TROP2 and CD3.
  • the fourth object of the present invention is to provide the use of the above-mentioned TROP2 antibody, bispecific antibody binding to TROP2 and CD3 or an active fragment thereof.
  • the present invention provides the following technical solutions:
  • the present invention provides a TROP2 antibody, which includes a heavy chain variable region and a light chain variable region, and the CDR1, CDR2, and CDR3 of the heavy chain variable region have amino acids shown in SEQ ID NO.1-3 respectively sequence, or it respectively has the amino acid sequence shown in SEQ ID NO.1-3 as a reference sequence, and contains one or more combinations of the following mutations:
  • the CDR1, CDR2 and CDR3 of the light chain variable region have the amino acid sequences shown in SEQ ID NO.4-6 respectively, or they respectively have the amino acid sequences shown in SEQ ID NO.4-6 as the reference sequence,
  • An amino acid sequence comprising a combination of one or more of the following mutations:
  • the present invention screens the anti-TROP2 genetically engineered single-chain antibody from the fully synthetic single-chain human antibody library, obtains the variable region sequence of the antibody, constructs a mutation library through a point mutation kit, and obtains clones with high affinity.
  • the DNA was mixed to assemble a single-chain antibody combinatorial library in a recombinant way, and after screening, a high-affinity TROP2 antibody that binds to human TROP2 was obtained.
  • the amino acid sequence pattern of the antibody variable region provided by the present invention is FR1-CDR1-FR2-CDR2-FR3-CDR3-FR4.
  • FR1-4 represent four framework regions
  • CDR1-3 represent three hypervariable regions.
  • FR1-4 can be isolated from the constant region sequence (such as the most commonly used amino acids of human immunoglobulin light and heavy chain class, subclass or subfamily), or can be isolated from a single human antibody framework region or from different Combination of framework region genes.
  • the present invention provides a TROP2 antibody, which includes a heavy chain variable region and a light chain variable region, and the CDR1 of the heavy chain variable region has the amino acid sequence shown in any one of SEQ ID NO.1, 7, CDR2 has the amino acid sequence shown in any one of SEQ ID NO.2,8,9, and CDR3 has the amino acid sequence shown in any one of SEQ ID NO.3,10;
  • the CDR1 of the light chain variable region has the amino acid sequence shown in any one of SEQ ID NO.4, 11, 12, the CDR2 has the amino acid sequence shown in any one of SEQ ID NO.5, 13, 14, and the CDR3 has the amino acid sequence shown in SEQ ID NO. The amino acid sequence shown in any one of 6 and 15.
  • the present invention provides the following TROP2 antibodies with higher TROP2 binding affinity, and the CDR of the heavy chain variable region is any of the following:
  • CDR1 has the amino acid sequence shown in SEQ ID NO.1
  • CDR2 has the amino acid sequence shown in SEQ ID NO.2
  • CDR3 has the amino acid sequence shown in SEQ ID NO.3;
  • CDR1 has the amino acid sequence shown in SEQ ID NO.7
  • CDR2 has the amino acid sequence shown in SEQ ID NO.9
  • CDR3 has the amino acid sequence shown in SEQ ID NO.3;
  • CDR1 has the amino acid sequence shown in SEQ ID NO.7
  • CDR2 has the amino acid sequence shown in SEQ ID NO.8
  • CDR3 has the amino acid sequence shown in SEQ ID NO.3;
  • CDR1 has the amino acid sequence shown in SEQ ID NO.7
  • CDR2 has the amino acid sequence shown in SEQ ID NO.8
  • CDR3 has the amino acid sequence shown in SEQ ID NO.10;
  • the CDRs of the light chain variable region are any of the following:
  • CDR1 has the amino acid sequence shown in SEQ ID NO.4, CDR2 has the amino acid sequence shown in SEQ ID NO.5, and CDR3 has the amino acid sequence shown in SEQ ID NO.6;
  • CDR1 has the amino acid sequence shown in SEQ ID NO.4
  • CDR2 has the amino acid sequence shown in SEQ ID NO.13
  • CDR3 has the amino acid sequence shown in SEQ ID NO.15;
  • CDR1 has the amino acid sequence shown in SEQ ID NO.11
  • CDR2 has the amino acid sequence shown in SEQ ID NO.13
  • CDR3 has the amino acid sequence shown in SEQ ID NO.15;
  • CDR1 has the amino acid sequence shown in SEQ ID NO.12
  • CDR2 has the amino acid sequence shown in SEQ ID NO.13
  • CDR3 has the amino acid sequence shown in SEQ ID NO.15;
  • CDR1 has the amino acid sequence shown in SEQ ID NO.12
  • CDR2 has the amino acid sequence shown in SEQ ID NO.14
  • CDR3 has the amino acid sequence shown in SEQ ID NO.15;
  • CDR1 has the amino acid sequence shown in SEQ ID NO.4, CDR2 has the amino acid sequence shown in SEQ ID NO.14, and CDR3 has the amino acid sequence shown in SEQ ID NO.15;
  • the following antibodies have higher binding affinity to TROP2, and the CDRs of the heavy chain variable region and the CDRs of the light chain variable region are any of the following:
  • CDR1 of the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.1, CDR2 has the amino acid sequence shown in SEQ ID NO.2, and CDR3 has the amino acid sequence shown in SEQ ID NO.3;
  • light chain CDR1 of the variable region has the amino acid sequence shown in SEQ ID NO.4, CDR2 has the amino acid sequence shown in SEQ ID NO.5, and CDR3 has the amino acid sequence shown in SEQ ID NO.6;
  • CDR1 of the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.7
  • CDR2 has the amino acid sequence shown in SEQ ID NO.8
  • CDR3 has the amino acid sequence shown in SEQ ID NO.3
  • light chain CDR1 of the variable region has the amino acid sequence shown in SEQ ID NO.4
  • CDR2 has the amino acid sequence shown in SEQ ID NO.13
  • CDR3 has the amino acid sequence shown in SEQ ID NO.15;
  • CDR1 of the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.7
  • CDR2 has the amino acid sequence shown in SEQ ID NO.8
  • CDR3 has the amino acid sequence shown in SEQ ID NO.3
  • light chain CDR1 of the variable region has the amino acid sequence shown in SEQ ID NO.12
  • CDR2 has the amino acid sequence shown in SEQ ID NO.13
  • CDR3 has the amino acid sequence shown in SEQ ID NO.15;
  • CDR1 of the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.7
  • CDR2 has the amino acid sequence shown in SEQ ID NO.8
  • CDR3 has the amino acid sequence shown in SEQ ID NO.3
  • light chain CDR1 of the variable region has the amino acid sequence shown in SEQ ID NO.12
  • CDR2 has the amino acid sequence shown in SEQ ID NO.14
  • CDR3 has the amino acid sequence shown in SEQ ID NO.15.
  • the present invention provides the sequences of the heavy chain and light chain variable regions of these TROP2 antibodies:
  • the heavy chain variable region has the amino acid sequence shown in any one of SEQ ID NO.16, 18-20, and the light chain variable region has the amino acid sequence shown in any one of SEQ ID NO.17, 21-25;
  • the heavy chain variable region and the light chain variable region have at least one of the following two requirements: a) binding to the same antigenic epitope; b) sequence identity greater than 70%, 80%, 85% %, 90%, 97%, 98% or 99% of the amino acid sequence.
  • the antibody with the following variable region sequence shows more excellent TROP2 binding affinity: the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.16, and the light chain variable region has the amino acid sequence shown in SEQ ID NO.17 The amino acid sequence shown;
  • the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.19, and the light chain variable region has the amino acid sequence shown in SEQ ID NO.21;
  • the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.19, and the light chain variable region has the amino acid sequence shown in SEQ ID NO.23;
  • the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.19
  • the light chain variable region has the amino acid sequence shown in SEQ ID NO.24.
  • the Fc fragment of the heavy chain of the above-mentioned TROP2 antibody is the Fc fragment of a human or humanized antibody
  • the human or humanized antibody is IgG1, IgG2, IgA, IgE, IgM, IgG4 or IgD.
  • the heavy chain of the TROP2 antibody has the amino acid sequence shown in any one of SEQ ID NO.27, 29, and the light chain has the amino acid sequence shown in any one of SEQ ID NO.28, 30; or, the heavy chain, light chain Compared with the aforementioned sequence, the chain has at least one of the following two: a) binding to the same antigenic epitope; b) sequence identity greater than 70%, 80%, 85%, 90%, 97%, 98% or 99% amino acid sequence.
  • the present invention provides a TROP2 antibody having the following heavy chain and light chain full-length sequences: the heavy chain has the amino acid sequence shown in SEQ ID NO.27, and the light chain has the amino acid sequence shown in SEQ ID NO.28; or, the heavy chain has the amino acid sequence shown in SEQ ID NO.28; The amino acid sequence shown in SEQ ID NO.29, the light chain has the amino acid sequence shown in SEQ ID NO.30.
  • the human anti-human TROP2 antibody provided by the invention binds to human TROP2 with an affinity of 4.35nM-7.5nM.
  • the antibody binds to cells expressing TROP2, and the cells can be human epithelial malignant tumors (gastric cancer, cervical cancer, breast cancer, lung cancer, prostate cancer, colon cancer, esophageal cancer, pancreatic cancer, head and neck cancer, ovarian cancer, intrauterine mucosa Serous papillary carcinoma and other tumors) cells.
  • the present invention also provides single-chain antibodies, Fab antibodies, miniature antibodies, chimeric antibodies, full antibody immunoglobulin IgG1, IgG2, IgA, IgE, IgM, IgG4 or IgD, bispecific antibodies, Multispecific Antibodies.
  • the present invention provides a bispecific antibody that binds to TROP2 and CD3, which includes: a first domain that binds to trophoblast cell surface antigen 2, and a second domain that binds to the T cell surface antigen CD3, wherein the first The domains include a heavy chain variable region and a light chain variable region, which are the heavy chain variable region and light chain variable region of the TROP2 antibody described above.
  • the first structural domain of the bispecific antibody is two complete light chain-heavy chain pairs connected by disulfide bonds, and the amino acid sequences of the heavy chain and the light chain are the heavy chain of the above-mentioned TROP2 antibody. Amino acid sequences of chain and light chain.
  • the heavy chain variable region preferably has the amino acid sequence shown in SEQ ID NO.31, and the light chain variable region preferably has the amino acid sequence shown in SEQ ID NO.32;
  • the light chain variable region and the heavy chain variable region of the second structural domain are connected into a single-chain antibody through a connecting peptide, and the single-chain antibody has the amino acid sequence shown in SEQ ID NO.33.
  • the bispecific antibody of the present invention is preferably designed with the following structure: the first domain contains two complete light chain-heavy chain pairs, and the second domain contains two single-chain antibodies, which are connected by any of the following methods Symmetrical structure:
  • the present invention finds that for the sequences of the above-mentioned first domain and the second domain, the bispecific antibody with the above-mentioned symmetrical structure can better retain the first domain and the second domain than bispecific antibodies with other structures.
  • the specific antigen-binding ability of the primary antibody of the structural domain, and the excellent biological function of binding TROP2 and CD3, have obvious advantages in production technology and medicinal properties.
  • the present invention has developed a bispecific antibody binding to TROP2 and CD3 having the above-mentioned antibody molecular structure.
  • the bispecific antibody has a specific targeting effect and can efficiently stimulate a oriented immune response to kill tumor cells.
  • the amino acid sequence of the connecting peptide used to connect the first domain and the second domain is (GGGGX)n, wherein X is Gly or Ser, and n is a natural number of 1-4.
  • amino acid sequence of the connecting peptide is shown in SEQ ID NO.34.
  • the present invention constructs a bispecific antibody that simultaneously binds to TROP2 and CD3, and its structure and sequence are as follows:
  • the heavy chain of the first structural domain has the amino acid sequence shown in SEQ ID NO.35 or 36 after connecting the second structural domain with the connecting peptide, and the light chain has the amino acid sequence shown in SEQ ID NO.28 or 30 .
  • the heavy chain of the first structural domain has the amino acid sequence shown in SEQ ID NO.35 after connecting the second structural domain with the connecting peptide, and the light chain has the amino acid sequence shown in SEQ ID NO.28,
  • the heavy chain of the first structural domain and the second structural domain have the amino acid sequence shown in SEQ ID NO.36 after connecting the second structural domain, and the light chain has the amino acid sequence shown in SEQ ID NO.30.
  • sequences shown in SEQ ID NO.1-36 disclosed and claimed above include “conservative sequence modifications", that is, nucleotide and amino acid sequences that do not significantly affect and change the binding characteristics of the antibody or the antibody containing the amino acid sequence grooming.
  • conservative sequence modifications include nucleotide or amino acid substitutions, additions or deletions.
  • Modifications can be introduced into SEQ ID NO.1-36 by standard techniques in the art, such as site-directed mutagenesis and PCR-mediated mutagenesis.
  • Conservative amino acid substitutions include amino acid residues being replaced by amino acid residues with similar side chains or other amino acid residue substitution. In the art, families of amino acid residues having similar side chains have been defined.
  • amino acids with basic side chains such as lysine, arginine, histidine
  • amino acids with acidic side chains such as aspartic acid, glutamic acid
  • uncharged polar side chains such as chain amino acids (such as glycine, asparagine, glutamine, serine, threonine, tyrosine, cysteine, tryptophan)
  • amino acids with non-polar side chains such as alanine, valine amino acid, leucine, isoleucine, proline, phenylalanine, methionine
  • amino acids with ⁇ -branched side chains such as threonine, valine, isoleucine
  • Amino acids with aromatic side chains eg, tyrosine, phenylalanine, tryptophan, histidine. Therefore, it is preferred to replace a non-essential amino acid residue in a human anti-TROP2 antibody with another amino acid residue from the same side chain family.
  • the antibody having the amino acid sequence disclosed above and/or the antibody comprising the amino acid sequence disclosed above includes antibodies substantially encoded by similar sequences modified by conservative sequences, or antibodies containing similar sequences modified by conservative sequences, both should be regarded as the scope of the present invention.
  • the present invention also provides nucleic acid molecules encoding the TROP2 antibody and nucleic acid molecules encoding the bispecific antibody binding to TROP2 and CD3.
  • the gene encoding the antibody of the present invention can be modified in its coding region without changing the amino acid sequence to obtain the gene encoding the same antibody.
  • Those skilled in the art can artificially synthesize and modify the gene according to the codon preference of the host expressing the antibody to improve the expression efficiency of the antibody.
  • the present invention also provides biological materials containing the nucleic acid molecules, and the biological materials include recombinant DNA, expression cassettes, vectors, host cells, engineering bacteria or cell lines.
  • the vectors include but are not limited to cloning vectors and expression vectors, and may be vectors such as plasmid vectors, viral vectors, and transposons.
  • the host cell or cell line may be a cell or cell line derived from microorganisms or animals.
  • the present invention also provides a method for preparing the TROP2 antibody or the bispecific antibody binding to TROP2 and CD3, which includes: introducing the nucleic acid encoding the antibody into a host cell to obtain a host stably expressing the bispecific antibody Cells; host cells are cultured, and the antibody is obtained through separation and purification.
  • TROP2 antibody or the bispecific antibody that binds to TROP2 and CD3 When preparing the TROP2 antibody or the bispecific antibody that binds to TROP2 and CD3, those skilled in the art can select conventional host cells, expression vectors, methods for introducing expression vectors into host cells, and antibody isolation as required. Purification method.
  • the present invention provides a TROP2 antibody, a bispecific antibody binding to TROP2 and CD3, a nucleic acid molecule encoding the antibody, and a nucleic acid molecule containing the nucleic acid molecule.
  • the above-mentioned diseases related to TROP2 expression are preferably tumors with high expression/overexpression of TROP2, especially epithelial malignant tumors expressing TROP2 (including but not limited to gastric cancer, cervical cancer, breast cancer, lung cancer, prostate cancer, colon cancer, esophageal cancer, etc.) Cancer, pancreatic cancer, head and neck cancer, ovarian cancer, intrauterine mucosal serous papillary cancer and other tumors).
  • epithelial malignant tumors expressing TROP2 including but not limited to gastric cancer, cervical cancer, breast cancer, lung cancer, prostate cancer, colon cancer, esophageal cancer, etc.
  • Cancer pancreatic cancer, head and neck cancer, ovarian cancer, intrauterine mucosal serous papillary cancer and other tumors.
  • the drug is an antineoplastic drug.
  • the above-mentioned labeled antibody may be a radioisotope-labeled antibody.
  • the bispecific antibodies provided by the invention are useful in therapy and diagnosis per se.
  • Antibodies can be labeled, cross-linked or conjugated and fused with other proteins or polypeptide molecules to form complexes (such as cytotoxic substances, radioactive toxins and/or chemical molecules, etc.) for diagnosis and treatment.
  • the present invention provides a multispecific antibody, a fusion protein, an immunotoxin, a drug or a detection reagent comprising the TROP2 antibody or the bispecific antibody binding to TROP2 and CD3.
  • the immunotoxins described above comprise TROP2 antibodies or bispecific antibodies linked to cytotoxic agents in various formats.
  • the various linking forms are antibody labeling, in vitro cross-linking or molecular coupling.
  • the cytotoxic agents include chemical molecules, radioactive isotopes, polypeptides, toxins and other substances that can kill or induce cell death.
  • the above-mentioned fusion protein comprises the complex of the above-mentioned TROP2 antibody or bispecific antibody provided by the present invention and other proteins or polypeptide molecules with certain functions.
  • the fusion protein can be a recombinant expression vector constructed by linking antibody genes with immunotoxin or cytokine genes, and the recombinant fusion protein molecule can be obtained through mammalian cells or other expression systems.
  • the above-mentioned drugs and detection reagents may also contain other active ingredients or adjuvants allowed in the field of pharmacy and detection reagents (such as: antibody components and pharmacologically acceptable delivery molecules or solutions. Among them, the therapeutic group Divided into sterile, can be freeze-dried at low temperature).
  • the anti-TROP2 antibody and bispecific antibody provided by the present invention can inhibit one or more biological activities induced by TROP2. These antibodies function by depleting TROP2 on the cell surface after binding to TROP2 and internalizing the complex. All interfering functions possessed by TROP2 antagonists are equally considered objects of the present invention.
  • the present invention uses genetic engineering and phage surface display library technology to screen specific anti-TROP2 antibodies from the single-chain antibody library of natural full human sequences.
  • the TROP2 antibodies provided by the present invention have good ability to bind TROP2.
  • ELISA detection and flow cytometry detection can specifically bind to TROP2 on the surface of MDA-MB-231, MDA-MB-468, MCF7 and other cells, indicating that the target specificity is good, and the binding affinity to human TROP2 is 4.35nM-7.5 nM, has a good prospect for therapeutic application.
  • the present invention uses genetic engineering and antibody engineering methods to construct a bispecific antibody that binds to TROP2 and CD3 comprising a single-chain antibody and a complete monoclonal antibody structure, and the bispecific antibody fusion protein retains a complete monoclonal antibody structure, and has a highly stable symmetrical structure, which better retains the biological functions of anti-CD3 single-chain antibody and anti-TROP2 monoclonal antibody, and realizes a bispecific antibody molecule with excellent anti-TROP2 and anti-CD3
  • the biological function of monoclonal antibodies can build a bridge between tumor cells and immune effector cells, effectively activate immune effector cells and guide immune responses, significantly enhance the efficacy of immune cells in killing tumor cells, and at the same time minimize ADCC effect, with higher security.
  • the bispecific antibody due to the completely symmetrical structure of the bispecific antibody provided by the present invention, it will not produce protein isomers of other structures when expressed in the host, thereby greatly reducing the difficulty of extraction and purification processes, and has the advantages of simple preparation, The advantage of high yield has broad application prospects in tumor immunotherapy.
  • the present invention provides human TROP2-specific antibody candidate molecules for the development of anti-tumor antibody drugs targeting TROP2 targets, CAR-T reagent development, prevention and treatment.
  • the bispecific antibody of the present invention can simultaneously bind immune cells and tumor cells, guide T immune response, specifically and effectively kill tumor cells, and can be developed as an antibody drug for epithelial malignant tumors.
  • FIG 1 is a schematic diagram of the protein structure and TCR structure of TROP2 in the background technology of the present invention, wherein, A is the structure of the TROP2 antigen, source: Goldenberg DM, Stein R, Sharkey RM.The emergence of trophoblast cell-surface antigen 2 (TROP-2 )as a novel cancer target.Oncotarget.2018 Jun 22;9(48):28989-29006.doi:10.18632/oncotarget.25615.PMID:29989029;PMCID:PMC6034748;B is the T cell receptor (TCR) complex structure And the composition of CD3.
  • Source https://www.researchgate.net/publication/299549376.
  • Figure 2 is the flow cytometry (FACS) analysis of the combination of TROP2 and the lead clone 1F7 in Example 2 of the present invention, wherein,
  • A negative control
  • B positive control
  • C candidate clone IF7.
  • Fig. 3 is the analysis of the affinity of 1F7 and its affinity matured mutant F7A to human and cynomolgus TROP2 by plasmon resonance (SPR) technology in Example 3 of the present invention, where the ordinate is the binding reaction unit (RU).
  • SPR plasmon resonance
  • Figure 4 is a schematic diagram of the structure of the anti-TROP2 ⁇ CD3 bispecific antibody constructed based on the FIST platform in Example 4 of the present invention, wherein, A: the double antibody constructed with N-terminal fusion (nFIST): the anti-CD3 single chain antibody is fused to the anti-CD3 The N-terminal of the VH of the TROP2 antibody; B: the double antibody constructed by C-terminal fusion (cFIST): the anti-CD3 single-chain antibody is fused to the C-terminal of the Fc of the anti-TROP2 antibody.
  • nFIST N-terminal fusion
  • cFIST C-terminal fusion
  • Fig. 5 is the SPR analysis of the affinity of the single-chain antibody K3 to CD3 in Example 4 of the present invention.
  • Figure 6 is the SDS-PAGE electrophoresis of bispecific antibodies F7AK3 and 1F7K3 in Example 5 of the present invention, wherein A and C are reducing SDS-PAGE electrophoresis; B and D are non-reducing SDS-PAGE electrophoresis; A and B are 1F7 SDS-PAGE electrophoresis results of K3 bispecific antibody; C and D are SDS-PAGE electrophoresis results of F7AK3 bispecific antibody; lane M represents protein molecular weight standard, and lane 1 is target protein.
  • Fig. 7 is the HPLC-SEC purity analysis peak shape of the bispecific antibodies F7AK3 and K3F7A purified in Example 5 of the present invention, wherein, A is the bispecific antibody F7AK3; B is the bispecific antibody 1F7 K3.
  • Fig. 8 is the combination of F7AK3 and TROP2 analyzed by flow cytometry and the combination of F7AK3 and T cells in Example 6 of the present invention, wherein, A: flow cytometry analysis of the combination of F7AK3 to TROP2 cell lines; B-G: gradient analysis of F7AK3 to TROP2 The binding capacity of each cell line;
  • Figure 9 shows the bridging effect of F7AK3 on TROP2 positive cells and T cells in Example 6 of the present invention.
  • Figure 10 is the detection of the killing ability of T cells on human breast cancer cells (MCF, MDA-MB-231, MDA-MB-468, HCC1395) mediated by the binding of F7AK3 double antibody to TROP2 antigen in Example 7 of the present invention, wherein, A, B, C, and D are MCF, MDA-MB-231, MDA-MB-468, and HCC1395 cells, respectively.
  • Antibody library technology is a method of cloning all antibody variable region genes of a certain animal (including humans) into plasmids or phages. After the latter infects E. coli, antibody fragments are expressed on the surface of phage particles, or on the periplasm of E. coli, cytoplasm in the pulp. Then use the target antigen to screen the clones carrying specific antibody genes from the antibody library, so as to obtain the corresponding specific antibody technology.
  • Various antibodies needed in basic research and clinical development have been screened from the antibody library, such as tumor-associated membrane protein antigens, autoantigens related to autoimmune diseases, and antibodies against viral antigens of viral diseases. These show the great application potential of antibody library technology in basic research and antibody drug development.
  • obtaining fully human monoclonal antibodies from human antibody libraries overcomes the difficulty of obtaining human monoclonal antibodies using mouse hybridoma technology; The immunogenicity of the antibody is much lower than that of animal-derived antibodies, so it is safer.
  • RNA extraction kit such as QIAGEN's RNeasy Mini Kit, catalog number 74104
  • PBMC peripheral blood mononuclear cells
  • reverse transcription kit such as ThermoFisher Scientific's cDNA synthesis kit (SuperScript TM IV Reverse Transcriptase)
  • the heavy chain with the bridge can be The variable region (VH) 3'-end primer set and the light chain variable region (VL) 5'-end primer set with a bridge were respectively combined with the other end primer (containing a specific restriction endonuclease site ) coordination, so that the obtained VH and VL can take the head link to form a single-chain antibody (scFv) gene.
  • VH variable region
  • VL light chain variable region
  • scFv scFv genes
  • the gene is cloned into a lysogenic phagemid (phagemid, such as M13 phagemid) vector to construct an antibody library.
  • phagemid phagemid, such as M13 phagemid
  • the size of the library reaches 5 billion colony-forming units (cfu).
  • Biopanning refers to the process of screening an antibody library with a specific target to obtain a specific monoclonal antibody.
  • panning was performed by liquid phase screening.
  • the general steps of the liquid phase panning method are as follows: firstly, the commercialized TROP2 antigen (TROP2-Fc fusion protein, Acrobiosystems, cat. molecular.
  • An appropriate amount of biotin-labeled TROP2 antigen was bound to streptavidin-coupled magnetic beads (eg, Dynabeads TM M-280 Streptavidin, ThermoFisher Scientific, Cat# 11205D).
  • streptavidin-coupled magnetic beads eg, Dynabeads TM M-280 Streptavidin, ThermoFisher Scientific, Cat# 11205D.
  • Both magnetic beads and antibody libraries were blocked with 4% non-fat dry milk solution (4% MPBS) to eliminate non-specific interaction sites. Since there may be streptavidin that has not been bound by avidin on the magnetic beads, and because the TROP2 antigen molecule is a fusion protein composed of human Fc, it is necessary to add a sufficient amount (50-100 times) to the thawed antibody library at the same time. streptavidin and human antibody Fc in excess of the amount of target protein used) to remove antibody clones that bind them.
  • the phage antibody solution eluted from the first round of panning was used to infect Escherichia coli (such as TG1 strain) in the logarithmic phase that can be infected by M13 phage to obtain an infection solution.
  • the titer is also called the first round of maximum diversity, usually the output titer after the first round of panning is below 10E6 cfu.
  • helper phage M13K07 to make the multiplicity of infection 20:1, and keep it at 37°C for 30 minutes (this stage is called for phage rescue).
  • Centrifuge resuspend the cells with 50ml expression medium (2YT-AK, add Carbenicillin and Kanamycin to 2YT medium, the final concentrations are 100 ⁇ g/ml and 30 ⁇ g/ml respectively), place at 30°C, 200 rpm, and culture overnight .
  • the culture supernatant was harvested by centrifugation, 1/5 volume of PEG8000/NaCl (PEG-8000 20%, NaCl 2.5M) was added, mixed well, and incubated on ice for 1 hour. High-speed centrifugation (11500 ⁇ g) for 30 minutes to harvest phage antibody particles. Resuspend the pellet with 1ml PBS solution and centrifuge again at high speed to remove bacterial debris. The supernatant is the amplification solution after the first round of panning, and each antibody clone contained in it has been amplified more than ten thousand times. This amplification solution can be used for the second round of panning experiments.
  • the operation of the second round of panning is exactly the same as that of the first round except that it is increased to 6 times (6/6) in PBST/PBS.
  • the number of washes can be further increased to 10/10.
  • Multiple rounds of panning usually effectively enrich specific clones. Although the diversity is significantly reduced, their affinity is relatively high, which is convenient for subsequent monoclonal screening.
  • a monoclonal phage enzyme-linked immunosorbent assay (Monophage ELISA) is required.
  • Monophage ELISA monoclonal phage enzyme-linked immunosorbent assay
  • single colonies separated well in the second and/or third round of serial dilution were individually inoculated into 96-well culture plates containing 2YT-AG (93 colonies per plate, leaving three wells as a negative control), cultured overnight, this is the master plate. Inoculate the bacterial solution in each well of the master plate into a new culture plate and grow to the logarithmic phase, perform the above-mentioned phage rescue, and express the antibody of each clone on the surface of the phage.
  • TROP2 antigen (1 ⁇ g/ml) on common 96-well enzyme-linked plate. Each individually expressed monoclonal phage antibody bacterial solution was added to the TROP2 plate, followed by an appropriate secondary antibody (mouse anti-M13 monoclonal antibody) and horseradish peroxidase (HRP)-coupled tertiary antibody (rabbit anti-mouse polyclonal antibody) Antibody), add HRP substrate for color development, and read the absorbance value (450nM).
  • the method for judging TROP2 positive clones is: the signal is more than 3 times higher than that of negative control wells. After analysis, clones corresponding to multiple wells were positive for the TROP2 antigen, and these clones were collectively referred to as hits.
  • amino acid sequences of CDR1, CDR2 and CDR3 of the heavy chain variable region of 1F7 are shown in SEQ ID NO.1-3 respectively, and the amino acid sequences of CDR1, CDR2 and CDR3 of the light chain variable region are shown in SEQ ID NO.4- 6, the amino acid sequence of the heavy chain variable region is shown in SEQ ID NO.16, and the amino acid sequence of the light chain variable region is shown in SEQ ID NO.17.
  • the amino acid sequence of the single-chain antibody composed of the light chain and heavy chain variable regions of 1F7 is shown in SEQ ID NO.26.
  • the gene of the 1F7 single-chain antibody was cloned into the eukaryotic expression vector pFH (manufactured by Ekest) to obtain the plasmid pFH-1F7.
  • the scFv gene is fused with the Fc gene of human IgG4 to express the protein in the form of scFv-Fc, which can be affinity purified with Potein-A or labeled with (HRP or fluorescein) anti-human Fc antibody detection.
  • the binding of 1F7 to the TROP2-expressing CHO cell line was detected by flow cytometry, and it was confirmed that 1F7 specifically binds to the TROP2 antigen on the surface of the cell membrane (see Fig. 2).
  • the angle percentage (positive percentage) in the figure represents the binding strength of the antibody to the cell surface antigen.
  • the positive percentage of clone 1F7 was 89.33%, thus verifying the ability of the antibody to bind to the human cell surface antigen TROP2.
  • In vitro affinity maturation is a rapid directed molecular evolution operation: mutations are introduced at the DNA level and screened at the protein binding level.
  • the mutation sites are limited to the sequence of the CDR region, and each position is subjected to saturation mutations, and each mutation is expressed separately. Tested separately.
  • the operation process of affinity maturation is as follows: firstly, the light and heavy chain variable region genes of 1F7 are respectively cloned into the pUFL vector (pUFL is a plasmid capable of expressing antibody Fab in Escherichia coli, prepared by Ecosite), and the Fab form of 1F7. Design a full set of single-point random mutation primers in the CDR region, and perform PCR mutations on each CDR position with the point mutation kit (QuikChange Lightning Multi Site-Directed Mutagenesis Kit, Agilent catalog number 210515), respectively, and transform BL21 (DE3) competent bacteria, Plates of monoclonal colonies are prepared separately and these mutants are collectively referred to as single point mutation libraries.
  • point mutation kit QuantikChange Lightning Multi Site-Directed Mutagenesis Kit, Agilent catalog number 210515
  • the Fab vector of the parental 1F7 was also transformed.
  • pick 92 colonies according to the mutation of each CDR position to a 96-well culture plate containing the corresponding culture medium (containing 100 ⁇ g/ml Carbenicillin+0.1% glucose in 2YT), and pick in addition Take 3 parental colonies and leave 3 wells as blank controls.
  • the plate was placed at 37°C, cultured at 300 rpm for 6 hours, added IPTG to a final concentration of 1mM, transferred to 30°C, 300 rpm, cultured overnight, and Fab fragments were expressed and secreted into the medium.
  • Sequence analysis of the mutant region of the plasmid of the repeat-positive clone is performed to obtain the mutation information of the CDR amino acid. This process is called primary screening. In this way, all the mutation information in the CDR region that is beneficial to the improvement of affinity is obtained: the mutation sites that provide affinity in the heavy chain variable region CDR are shown in Table 1, and the mutation sites that provide affinity in the light chain variable region CDR are shown in Table 1. Table 2.
  • this library is called a combinatorial library.
  • combinatorial libraries containing multiple mutations in the variable regions of the light and heavy chains were respectively constructed and screened.
  • CDR1 of its light chain variable region has the amino acid sequence shown in any one of SEQ ID NO.4, 11, 12, CDR2 has the amino acid sequence shown in any one of SEQ ID NO.2, 13, 14, and CDR3 has the amino acid sequence shown in any one of SEQ ID NO.2, 13, 14 The amino acid sequence shown in any one of SEQ ID NO.3, 15.
  • the amino acid sequences of the 10 clones with the highest affinity were screened, and the amino acid sequences of their heavy chain variable region contained three mutant sequences, as shown in SEQ ID As shown in NO.18-20, the CDR1 of the heavy chain variable region has the amino acid sequence shown in any one of SEQ ID NO.1 and 7, and the CDR2 has the amino acid sequence shown in any one of SEQ ID NO.2, 8, or 9 , CDR3 has the amino acid sequence shown in any one of SEQ ID NO.3,10.
  • the amino acid sequence of CDR1 of the heavy chain variable region of 1F7 is shown in SEQ ID NO.1, the amino acid sequence of CDR2 is shown in SEQ ID NO.2, and the amino acid sequence of CDR3 is shown in SEQ ID NO.3; the light chain can be The amino acid sequence of CDR1 in the variable region is shown in SEQ ID NO.4, the amino acid sequence of CDR2 is shown in SEQ ID NO.5, and the amino acid sequence of CDR3 is shown in SEQ ID NO.6; the amino acid sequence of the heavy chain variable region As shown in SEQ ID NO.16, the amino acid sequence of the light chain variable region is shown in SEQ ID NO.17; the full-length sequence of the light chain is shown in SEQ ID NO.30, and the full-length sequence of the heavy chain is shown in SEQ ID NO.
  • amino acid sequence of CDR1 of the heavy chain variable region of F7A is shown in SEQ ID NO.7
  • amino acid sequence of CDR2 is shown in SEQ ID NO.8
  • amino acid sequence of CDR3 is shown in SEQ ID NO.3
  • the amino acid sequence of CDR1 in the variable region is shown in SEQ ID NO.4
  • the amino acid sequence of CDR2 is shown in SEQ ID NO.13
  • the amino acid sequence of CDR3 is shown in SEQ ID NO.15
  • amino acid sequence of the heavy chain variable region The sequence is shown in SEQ ID NO.19
  • amino acid sequence of the light chain variable region is shown in SEQ ID NO.21
  • the full-length sequence of the light chain is shown in SEQ ID NO.28
  • the full-length sequence of the heavy chain is shown in SEQ ID NO .27 shown.
  • the expressed and purified antibody products were detected by surface plasmon resonance (SPR), and their binding curves to human and cynomolgus monkey TROP2 proteins are shown in FIG. 3 .
  • the affinity analysis data are shown in Table 3. The results showed that the binding of mutant F7A to human TROP2 was 1.74 times higher than that of 1F7; the affinity to monkey TROP2 was 3.18 times higher.
  • the cross ratio between human and monkey was reduced from 5.38 times to 2.94 times (Table 3).
  • a bispecific antibody was designed using the tumor cell surface antigen TROP2 and the immune cell surface antigen CD3 as targets.
  • the present invention screened and determined bispecific antibodies with symmetrical structures including single-chain antibody units and monoclonal antibody units in a variety of bispecific antibody structures that bind TROP2 and CD3 structure.
  • the present invention refers to this technical platform as FIST (fusion of IgG and scFv technology).
  • FIST fusion of IgG and scFv technology.
  • the anti-TROP2 monoclonal antibody unit can be used as an IgG antibody, including two complete light chain-heavy chain pairs (that is, containing complete Fab and Fc domains, and the heavy chain and light chain are connected by disulfide bonds), anti-TROP2 CD3 can be used as a single chain antibody unit, including 2 single chain antibodies (ScFv).
  • the single-chain antibody and the monoclonal antibody are connected by a connecting peptide.
  • the following connection method can be designed to obtain a bispecific antibody with a symmetrical structure.
  • the schematic diagram of its structure is shown in Figure 4 shown.
  • nFIST was obtained by linking the C-terminal of the single-chain antibody to the N-terminal of the heavy chain variable region (VH) of the monoclonal antibody ( Figure 4A).
  • the single-chain antibody can also be fused to the C-terminus of IgG-Fc via a linker peptide to obtain cFIST ( Figure 4B).
  • the variable region sequence of the anti-CD3 single-chain antibody UCHT1 was obtained from the literature (Beverley, P.C. & Callard, R.E. Distinctive functional characteristics of human "T" lymphocytes defined by E rosetting or a monoclonal anti-T cell antibody (1981) Eur.J.Immunol.
  • the single-chain antibody thus constructed is named K3 (SEQ ID NO.33), which contains two cysteines (Cys) inserted in the variable region of the heavy chain and the variable region of the light chain respectively, which are formed after folding A pair of interchain disulfide bonds, the amino acid sequence of the heavy chain variable region is shown in SEQ ID NO.31, and the amino acid sequence of the light chain variable region is shown in SEQ ID NO.32. .
  • K3 SEQ ID NO.33
  • Cys cysteines
  • bispecific antibody coding gene designed in the form of cFIST in Example 4 and cloned into the expression vector pG4HK two bispecific antibodies F7AK3 and 1F7K3 were obtained, and their heavy chain amino acid sequences were shown in SEQ ID NO.35, 36, respectively. Shown; Light chain amino acid sequence shown in SEQ ID NO.28,30 respectively.
  • the expression plasmids corresponding to 1F7K3 and F7AK3 were stably transfected into CHO-K1 respectively, and the double antibody protein was expressed.
  • Feed liquid pretreatment the supernatant of the fermentation culture was centrifuged at 2000 rpm for 10 min, and then filtered through a 0.22 ⁇ M filter membrane.
  • Affinity chromatography Use Mabselect SuRe affinity chromatography column (purchased from GE Company, Cat. No. 18-5438-02) to capture the antibody in the pretreated fermentation broth, and equilibrate buffer (10mM PB, 0.1M NaCl, pH 7.0) to fully equilibrate the chromatography column, pass through the affinity chromatography column, and elute with elution buffer (0.1M citric acid, pH 3.0).
  • Cation exchange chromatography The sample prepared by affinity chromatography was further purified by molecular sieve exchange chromatography, buffer (50 mM PBS, 0.2 Man Na 2 SO 4 , pH 6.7).
  • 1F7K3 and F7AK3 were detected by SDS-PAGE and HPLC-SEC.
  • the results of SDS-PAGE are shown in FIG. 6
  • the results of HPLC-SEC detection are shown in FIG. 7 .
  • the test results showed that the bispecific antibodies 1F7K3 and F7AK3 were successfully prepared through expression and purification, and the monomer purity of the purified bispecific antibodies was above 95%.
  • a bispecific antibody of F7A and single-chain antibody K3 was constructed in the form of cFIST.
  • F7AK3 can bind to TNBC cell lines with different TROP2 expression levels in a concentration-dependent manner, and can also effectively bind to CD3 of human T cells, with a difference of 2-10 times in EC50 (Table 4).
  • F7AK3 can cross-link T cells and TNBC cancer cells (such as MDA-MB-468) to form cell clusters (synapse).
  • MCF, MDA-MB-231, MDA-MB-468, HCC1395, and murine cell 4T1 were used as target cells, and PBMC were used as immune effector cells to detect the killing effect of the target cells mediated by the bispecific antibody F7AK3 .
  • the specific experimental steps are as follows:
  • Target cell preparation culture target cells, blow evenly, count, centrifuge at 1000 rpm for 5 min, and wash once with PBS. After the target cells were centrifuged and washed, the density was adjusted to 0.2 ⁇ 10 6 /ml with GT-T551 medium, and 50 ⁇ l was added to each well, so the number of cells in each well was 10,000.
  • PBMC preparation use PBMC as effector cells. Take out the PBMC frozen in the liquid nitrogen tank (refer to cell freezing and recovery), thaw, add to a 15ml centrifuge tube containing PBS or GT-T551 medium, centrifuge at 1000rpm for 5min, and wash twice with PBS or GT-T551 medium. Count the number of cells, activity and density, adjust the density of viable cells to 2 ⁇ 10 6 /ml, add 50 ⁇ l to each well, then there are 100,000 cells in each well.
  • the bispecific F7AK3 was diluted with GT-T551 medium, and the initial antibody concentration was adjusted to 10 nM. Dilute in a ratio of 1:5. Add 100 ⁇ l of the diluted antibody to the prepared cells above, mix well, put the 96-well plate back into the incubator, and detect the killing effect after 24 hours.
  • Target cell killing ratio 100 ⁇ (reading value of target cell only-reading value of detection well)/reading value of detection well only.
  • the antibody concentration corresponding to the killing ratio of target cells in all the detection wells was converted into log10, and a curve was drawn using this as the abscissa and the killing ratio as the vertical axis.
  • the killing concentration-gradient curves of F7AK3 on sensitive cell lines MCF, MDA-MB-231, MDA-MB-468, and HCC1395 are shown in Figure 10; the killing percentages of different cells are shown in Table 5.
  • F7AK3 exhibits different killing abilities to different TROP2 + cells.
  • the invention relates to the technical field of genetic engineering antibodies, in particular to an antibody binding to TROP2, a bispecific antibody targeting TROP2 and CD3, and a preparation method and application thereof.
  • the TROP2 antibody provided by the present invention has a good ability to bind TROP2 and has high affinity; the bispecific antibody that binds TROP2 and CD3 has excellent biological functions of anti-TROP2 and anti-CD3 antibodies, and can bind between tumor cells and immune effector cells Build a bridge between them, effectively activate immune effector cells and oriented immune responses, significantly enhance the efficacy of immune cells in killing tumor cells, and at the same time minimize the ADCC effect. Good application prospects.

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Abstract

The present invention relates to the technical field of genetic engineering antibodies, and specifically to an antibody binding to TROP2, a bispecific antibody targeting TROP2 and CD3, preparation methods therefor and the uses thereof. The antibody binding to TROP2 provided in the present invention has a good capacity for binding to TROP2 and a high affinity. The bispecific antibody binding to TROP2 and CD3 simultaneously has the excellent biological functions of an anti-TROP2 antibody and an anti-CD3 antibody, can build a bridge between tumor cells and immune effector cells, effectively activates the immune effector cells and a directed immune response, significantly enhances the effect of immune cells in killing tumor cells in addition to reducing the ADCC effect to the largest extent, is relatively safe, and has good application prospects in tumor immunotherapy.

Description

一种结合TROP2的抗体及靶向TROP2和CD3的双特异性抗体及其制备方法与应用Antibody binding to TROP2, bispecific antibody targeting TROP2 and CD3, preparation method and application thereof
交叉引用cross reference
本申请要求2021年6月30日提交的专利名称为“一种结合TROP2的抗体及靶向TROP2和CD3的双特异性抗体及其制备方法与应用”的第202110736045.5号中国专利申请的优先权,其全部公开内容通过引用整体并入本文。This application claims the priority of the Chinese patent application No. 202110736045.5 filed on June 30, 2021, entitled "An antibody that binds TROP2 and a bispecific antibody targeting TROP2 and CD3, and its preparation method and application", The entire disclosure content thereof is incorporated herein by reference in its entirety.
技术领域technical field
本发明涉及基因工程抗体技术领域,具体涉及一种结合TROP2的抗体、靶向TROP2和CD3的双特异性抗体及其制备方法与应用。The invention relates to the technical field of genetic engineering antibodies, in particular to an antibody binding to TROP2, a bispecific antibody targeting TROP2 and CD3, and a preparation method and application thereof.
背景技术Background technique
抗体药物是以细胞工程技术和基因工程技术为主体的抗体工程技术制备的生物大分子药物,具有特异性高、性质均一、可针对特定靶点定向制备等优点。单克隆抗体在临床上主要应用于以下三个方面:肿瘤治疗、免疫性疾病治疗以及抗感染治疗。其中,肿瘤治疗是目前单克隆抗体应用最为广泛的领域,目前已经进入临床试验和上市的单克隆抗体产品中,用于肿瘤治疗的产品数量占比大概为50%。单克隆抗体治疗肿瘤是一种针对病变细胞特异靶点刺激免疫系统杀伤靶细胞的免疫疗法,为了增强抗体的效应功能,特别是提高杀伤肿瘤细胞的效果,人们尝试多种方法改造抗体分子。Antibody drugs are biomacromolecular drugs prepared by antibody engineering technology based on cell engineering technology and genetic engineering technology. They have the advantages of high specificity, uniform properties, and directional preparation for specific targets. Monoclonal antibodies are mainly used clinically in the following three aspects: tumor treatment, immune disease treatment and anti-infection treatment. Among them, tumor treatment is currently the most widely used field of monoclonal antibodies. Among the monoclonal antibody products that have entered clinical trials and are on the market, the number of products used for tumor treatment accounts for about 50%. Monoclonal antibody treatment of tumors is an immunotherapy that stimulates the immune system to kill target cells against specific targets of diseased cells. In order to enhance the effector function of antibodies, especially to improve the effect of killing tumor cells, people have tried various methods to modify antibody molecules.
获取特异性抗体的方法有多种。传统的杂交瘤技术通过免疫小鼠或大鼠,将其脾脏细胞与骨髓瘤细胞融合,然后进行稀释(至一个细胞每孔)培养,用酶联免疫法(ELISA)检测杂交瘤细胞上清与免疫抗原的结合,进而筛选可分泌与抗原特异性结合抗体的单克隆细胞株。这种鼠源抗体如果应用于临床药物研发,则需要通过杂合抗体技术(chimerization)、人源化技术(humanization)等基因工程手段进行去免疫原性改造。为了从起始阶段就消除未来临床必须解决的免疫原性问题,转基因鼠技术(transgenic mouse)通过替换鼠源抗体可变区为人源抗体可变区,使得获得的单克隆抗体的可变区序列主体上就是人源的,然后再进一步替换恒定区就可以获得全人源单克隆抗体。另外一个技术就是噬菌体表面呈现(phage display)技术。噬菌体表面呈现技术是在试管中构建工程抗体,一般是单链抗体或Fab形式。但是组成工程抗体的基因片段来源于人免疫细胞的基因库,所以获得的抗体是全人源的。已有多个噬菌体技术获得的抗体进入临床研究或获得批准,用于各个方面的疾病治疗。There are several ways to obtain specific antibodies. The traditional hybridoma technology immunizes mice or rats, fuses the spleen cells with myeloma cells, then dilutes them (to one cell per well) and cultures them, and uses enzyme-linked immunosorbent assay (ELISA) to detect the difference between the supernatant of hybridoma cells and Immunizing the combination of antigens, and then screening monoclonal cell lines that can secrete antibodies that specifically bind to antigens. If this mouse-derived antibody is used in clinical drug development, it needs to be deimmunized by genetic engineering methods such as hybrid antibody technology (chimerization) and humanization technology (humanization). In order to eliminate the immunogenicity problem that must be solved in the future clinical practice from the initial stage, the transgenic mouse technology (transgenic mouse) replaces the variable region of the mouse antibody with the variable region of the human antibody, so that the variable region sequence of the monoclonal antibody obtained The main body is human, and then the constant region can be further replaced to obtain a fully human monoclonal antibody. Another technology is the phage display technology. Phage surface display technology is to construct engineered antibodies in test tubes, usually in the form of single-chain antibodies or Fabs. However, the gene fragments that make up engineered antibodies are derived from the gene pool of human immune cells, so the antibodies obtained are fully human. Antibodies obtained by multiple phage technologies have entered clinical research or been approved for the treatment of various diseases.
在单克隆抗体的基础上,为了进一步提高药效和减少毒副作用,以单克隆抗体为基础的新抗体药物,包括药物偶联抗体(Antibody drug conjugate,ADC),双特异性抗体(bispecific antibody,bsAb)以及CAR-T(chimeric antigen receptor T cells)等新型蛋白和细胞药物的发展极为迅速。其中,基于双特异性构建的细胞桥(cell-bridging)双抗,由于具有连接免疫T细胞和癌靶细胞的能力,显著提高了杀伤活性和特异性,具有突破性的临床价值,受到了较多的关注。On the basis of monoclonal antibodies, in order to further improve drug efficacy and reduce side effects, new antibody drugs based on monoclonal antibodies include drug-conjugated antibodies (Antibody drug conjugate, ADC), bispecific antibodies (bispecific antibodies, The development of new protein and cell drugs such as bsAb) and CAR-T (chimeric antigen receptor T cells) is extremely rapid. Among them, the cell-bridging double antibody based on bispecificity has significantly improved the killing activity and specificity due to its ability to connect immune T cells and cancer target cells, and has a breakthrough clinical value. Much attention.
双特异性抗体可通过多种途径获得,其制备方法主要有:化学偶联法、杂交-杂交瘤法和基因工程抗体制备法。化学偶联法是将2个不同的单克隆抗体用化学偶联的方式连接在一起, 制备的双特异性单克隆抗体,这是最早的双特异性单克隆抗体。杂交-杂交瘤法是通过细胞杂交法或者三元杂交瘤的方式产生双特异性单克隆抗体,这些细胞杂交瘤或者三元杂交瘤是通过建成的杂交瘤融合,或者建立的杂交瘤和从小鼠的淋巴细胞融合而得到的,只能用于生产鼠源的双特异性抗体,因此,其应用受到了极大的限制。而随着分子生物学技术的迅速发展,出现了基因工程人源化或全人源的双特异性抗体的多种构建模式,主要包括双特异性微抗体、双链抗体、单链双价抗体、多价双特异性抗体四类。目前,国际上已有数种基因工程双特异性抗体药物进入临床试验阶段,并显示有较好的应用前景。Bispecific antibodies can be obtained in a variety of ways, and their preparation methods mainly include: chemical coupling method, hybrid-hybridoma method and genetic engineering antibody preparation method. The chemical coupling method is to link two different monoclonal antibodies together by chemical coupling to prepare a bispecific monoclonal antibody, which is the earliest bispecific monoclonal antibody. The hybrid-hybridoma method is to produce bispecific monoclonal antibodies by means of cell hybridization or ternary hybridomas. These cell hybridomas or ternary hybridomas are fused by established hybridomas, or established hybridomas and hybridomas derived from mice The fusion of lymphocytes can only be used to produce murine bispecific antibodies, so its application is greatly limited. With the rapid development of molecular biology technology, various construction modes of genetically engineered humanized or fully human bispecific antibodies have emerged, mainly including bispecific microbodies, diabodies, and single-chain diabodies. , multivalent bispecific antibody four categories. At present, several genetically engineered bispecific antibody drugs have entered the clinical trial stage in the world, and have shown good application prospects.
滋养层细胞表面抗原2(TROP2)是由TACSTD2基因编码表达的细胞表面糖蛋白,又名肿瘤相关钙离子信号转导子2(TACSTD2)、表皮糖蛋白1(EGP-1)、胃肠肿瘤相关抗原(GA733-1)、表面标志物1(M1S1),最早于人胎盘滋养层鉴定到的细胞表面糖蛋白,后来被发现高度表达于大部分人的实体肿瘤癌细胞中,且仅受限或有限地表达于正常人组织。TROP2属于GA733蛋白家族,与上皮细胞黏附分子(EpCAM,又称TROP1、TACSTD1)有较高结构序列相似性,同源性达49%。TROP2由323个氨基酸构成,其中信号肽含26个氨基酸,胞外区248个氨基酸,跨膜区23个氨基酸,胞质区26个氨基酸,其结构示意图如图1的A所示。TROP2主要通过调节钙离子信号通路、细胞周期蛋白表达及降低纤黏蛋白黏附作用促进肿瘤细胞生长、增殖和转移。TROP2也可以与Wnt信号级联中的β-连环蛋白相互作用,因而对细胞核癌基因的转录及细胞的增殖起作用。大量临床研究和文献报道表明,TROP2在乳腺癌、胰腺癌、胆囊癌、结肠癌、胃癌、非小细胞肺癌、前列腺癌、子宫癌和口腔鳞癌等上皮癌中过表达,而在成年人正常组织中很少表达或不表达;TROP2在肿瘤组织中的过表达与患者的预后不良和癌细胞的转移密切相关,同时影响患者的总生存率。因此,TROP2已成为肿瘤分子靶向治疗中引人注目的靶标。Trophoblastic cell surface antigen 2 (TROP2) is a cell surface glycoprotein encoded and expressed by the TACSTD2 gene, also known as tumor-associated calcium ion signal transducer 2 (TACSTD2), epidermal glycoprotein 1 (EGP-1), gastrointestinal tumor-related Antigen (GA733-1), surface marker 1 (M1S1), the first cell surface glycoprotein identified in human placental trophoblast, was later found to be highly expressed in most human solid tumor cancer cells, and only limited or Limited expression in normal human tissues. TROP2 belongs to the GA733 protein family, and has a high structural sequence similarity with epithelial cell adhesion molecule (EpCAM, also known as TROP1, TACSTD1), with a homology of 49%. TROP2 consists of 323 amino acids, including 26 amino acids in the signal peptide, 248 amino acids in the extracellular region, 23 amino acids in the transmembrane region, and 26 amino acids in the cytoplasmic region. The schematic diagram of its structure is shown in Figure 1A. TROP2 mainly promotes the growth, proliferation and metastasis of tumor cells by regulating calcium ion signaling pathways, cell cycle protein expression and reducing fibronectin adhesion. TROP2 can also interact with β-catenin in the Wnt signaling cascade, thus acting on the transcription of nuclear oncogenes and cell proliferation. A large number of clinical studies and literature reports have shown that TROP2 is overexpressed in epithelial cancers such as breast cancer, pancreatic cancer, gallbladder cancer, colon cancer, gastric cancer, non-small cell lung cancer, prostate cancer, uterine cancer and oral squamous cell carcinoma, while it is normal in adults. There is little or no expression in tissues; overexpression of TROP2 in tumor tissues is closely related to poor prognosis of patients and metastasis of cancer cells, and affects the overall survival rate of patients at the same time. Therefore, TROP2 has become an attractive target in tumor molecular targeted therapy.
TROP2是一种跨膜蛋白,其细胞外结构域在多种肿瘤细胞上分布广泛,因此成为了靶向治疗的天然候选。TROP2的组织表达局限性使得治疗的毒性降低,这也是靶向TROP2治疗的优势所在。以TROP2为靶点的抗体、抗体偶联物以及联合用药等多种形式的药物正处于研发中。抗TROP2抗体与其他化疗药物偶联的效用已在各种临床前研究中得到证实。用于治疗TROP2过表达的上皮恶性肿瘤的抗体偶联药物(ADC)IMMU-132已获FDA批准上市(2020年4月)。新型抗体偶联药物Sacituzumab govitecan(IMMU-132)是以TROP2为靶点,利用人源化抗体hRS7作为靶向载体与伊立替康活性代谢产物SN38偶联而成,可用于治疗多种上皮恶性肿瘤如乳腺癌(三阴乳腺癌)、卵巢癌、小细胞肺癌等。此外,其他人源化的抗TROP2IgG-SN-38偶联物,如抗TROP2hRS7-CL2A-SN-38抗体偶联药物,已被证明在多种肿瘤细胞系(Calu-3、Capan-1、BxPC-3和COLO-205)的异种移植模型中具有显著的特异性抗癌作用。综上所述,开发一种抗TROP2的特异抗体,尤其是具备良好的TROP2抗原结合性的完全人源化抗TROP2抗体具有重要意义。TROP2 is a transmembrane protein whose extracellular domain is widely distributed on a variety of tumor cells, making it a natural candidate for targeted therapy. The limited tissue expression of TROP2 reduces the toxicity of treatment, which is also the advantage of targeting TROP2 therapy. Various forms of drugs, such as antibodies targeting TROP2, antibody conjugates, and drug combinations, are under development. The utility of anti-TROP2 antibodies conjugated to other chemotherapeutic agents has been demonstrated in various preclinical studies. The antibody drug conjugate (ADC) IMMU-132 for the treatment of TROP2-overexpressing epithelial malignancies has been approved by the FDA (April 2020). The new antibody-conjugated drug Sacituzumab govitecan (IMMU-132) is based on TROP2 as the target, and the humanized antibody hRS7 is used as the targeting carrier to couple with the active metabolite SN38 of irinotecan, which can be used to treat a variety of epithelial malignant tumors Such as breast cancer (triple negative breast cancer), ovarian cancer, small cell lung cancer, etc. In addition, other humanized anti-TROP2 IgG-SN-38 conjugates, such as anti-TROP2hRS7-CL2A-SN-38 antibody drug conjugates, have been shown to be effective in various tumor cell lines (Calu-3, Capan-1, BxPC -3 and COLO-205) have significant specific anticancer effects in xenograft models. In summary, it is of great significance to develop a specific anti-TROP2 antibody, especially a fully humanized anti-TROP2 antibody with good TROP2 antigen binding.
T细胞表面的CD3分子由4个亚基δ、ε、γ、ζ组成,其分子质量分别为18.9k Da,23.1kDa,20.5kDa和18.7kDa,其长度分别为171、207、182、164个氨基酸残基,其共同组成6条肽链,常与T细胞受体(T cell receptor,TCR)紧密结合形成含有8条肽链的TCR-CD3复合体,其结构示意图见图1的B。该复合体具有T细胞活化、信号转导以及稳定TCR结构的功能。CD3胞质段含有免疫受体酪氨酸活化基序(immunoreceptor tyrosine-based activation motif,ITAM),TCR识别并结合由MHC(major histo-compatibility complex)分子提呈的抗原肽,导致CD3的ITAM的保守序 列中的酪氨酸残基被T细胞内的酪氨酸蛋白激酶p56lck磷酸化,然后募集其它含有SH2(Scr homology 2)结构域的酪氨酸蛋白激酶(如ZAP-70)。ITAM的磷酸化以及与ZAP-70的结合是T细胞活化信号传导过程早期阶段的重要生化反应之一。因此,CD3分子的功能是转导TCR识别抗原所产生的活化信号。基于CD3的功能,开发一种可用于免疫治疗的、同时结合TROP2和CD3的双特异性抗体具有重要意义。The CD3 molecule on the surface of T cells consists of four subunits δ, ε, γ, and ζ, with molecular masses of 18.9kDa, 23.1kDa, 20.5kDa, and 18.7kDa, and lengths of 171, 207, 182, and 164, respectively. Amino acid residues, which together form 6 peptide chains, are often tightly combined with T cell receptor (TCR) to form a TCR-CD3 complex containing 8 peptide chains. The schematic diagram of its structure is shown in Figure 1B. This complex has the functions of T cell activation, signal transduction and stable TCR structure. CD3 cytoplasm contains immunoreceptor tyrosine-based activation motif (immunoreceptor tyrosine-based activation motif, ITAM), TCR recognizes and binds the antigenic peptide presented by MHC (major histo-compatibility complex) molecules, resulting in the activation of CD3 ITAM The tyrosine residues in the conserved sequence are phosphorylated by the tyrosine protein kinase p56lck in T cells, and then recruit other tyrosine protein kinases (such as ZAP-70) containing the SH2 (Scr homology 2) domain. The phosphorylation of ITAM and the combination with ZAP-70 is one of the important biochemical reactions in the early stage of T cell activation signal transduction process. Therefore, the function of the CD3 molecule is to transduce the activation signal generated by the recognition of the antigen by the TCR. Based on the function of CD3, it is of great significance to develop a bispecific antibody that can be used for immunotherapy and simultaneously binds TROP2 and CD3.
发明内容Contents of the invention
本发明的第一目的在于提供一种结合TROP2的抗体及其活性片段。The first object of the present invention is to provide a TROP2-binding antibody and its active fragment.
本发明的第二目的在于提供结合TROP2和CD3的双特异性抗体及其活性片段。The second object of the present invention is to provide bispecific antibodies and active fragments thereof that bind to TROP2 and CD3.
本发明的第三目的在于提供编码TROP2抗体、结合TROP2和CD3的双特异性抗体的核酸。The third object of the present invention is to provide nucleic acids encoding TROP2 antibodies and bispecific antibodies binding to TROP2 and CD3.
本发明的第四目的在于提供上述TROP2抗体、结合TROP2和CD3的双特异性抗体或其活性片段的用途。The fourth object of the present invention is to provide the use of the above-mentioned TROP2 antibody, bispecific antibody binding to TROP2 and CD3 or an active fragment thereof.
具体地,本发明提供以下技术方案:Specifically, the present invention provides the following technical solutions:
首先,本发明提供一种TROP2抗体,其包括重链可变区和轻链可变区,所述重链可变区的CDR1、CDR2、CDR3分别具有SEQ ID NO.1-3所示的氨基酸序列,或者,其分别具有以SEQ ID NO.1-3所示的氨基酸序列为参考序列、含有如下突变中的一种或多种突变的组合的氨基酸序列:First, the present invention provides a TROP2 antibody, which includes a heavy chain variable region and a light chain variable region, and the CDR1, CDR2, and CDR3 of the heavy chain variable region have amino acids shown in SEQ ID NO.1-3 respectively sequence, or it respectively has the amino acid sequence shown in SEQ ID NO.1-3 as a reference sequence, and contains one or more combinations of the following mutations:
(1)SEQ ID NO.1所示的氨基酸序列的第1位S突变为N;(1) The first S of the amino acid sequence shown in SEQ ID NO.1 is mutated to N;
(2)SEQ ID NO.2所示的氨基酸序列的第4位P突变为R、K或G;(2) The fourth P of the amino acid sequence shown in SEQ ID NO.2 is mutated to R, K or G;
(3)SEQ ID NO.3所示的氨基酸序列的第1位P突变为H、A;(3) The first P in the amino acid sequence shown in SEQ ID NO.3 is mutated to H and A;
(4)SEQ ID NO.3所示的氨基酸序列的第2位N突变为E;(4) The second N of the amino acid sequence shown in SEQ ID NO.3 is mutated to E;
所述轻链可变区的CDR1、CDR2和CDR3分别具有SEQ ID NO.4-6所示的氨基酸序列,或者,其分别具有以SEQ ID NO.4-6所示的氨基酸序列为参考序列,含有如下突变中的一种或多种突变的组合的氨基酸序列:The CDR1, CDR2 and CDR3 of the light chain variable region have the amino acid sequences shown in SEQ ID NO.4-6 respectively, or they respectively have the amino acid sequences shown in SEQ ID NO.4-6 as the reference sequence, An amino acid sequence comprising a combination of one or more of the following mutations:
(1)SEQ ID NO.4所示的氨基酸序列的第5位G突变为N或E;(1) The fifth G of the amino acid sequence shown in SEQ ID NO.4 is mutated to N or E;
(2)SEQ ID NO.4所示的氨基酸序列的第7位S突变为R或K(2) The 7th S mutation of the amino acid sequence shown in SEQ ID NO.4 is R or K
(3)SEQ ID NO.5所示的氨基酸序列的第1位A突变为R;(3) The first A of the amino acid sequence shown in SEQ ID NO.5 is mutated to R;
(4)SEQ ID NO.5所示的氨基酸序列的第3位S突变为G、H或R;(4) The third S of the amino acid sequence shown in SEQ ID NO.5 is mutated to G, H or R;
(5)SEQ ID NO.5所示的氨基酸序列的第4位S突变为K。(5) The fourth S of the amino acid sequence shown in SEQ ID NO.5 is mutated into K.
本发明从全合成单链人抗体库中筛选出抗TROP2的基因工程单链抗体,并获得其抗体的可变区序列,通过点突变试剂盒构建突变文库,获得亲和力高的克隆,将这些克隆的DNA混合,以重组方式组装单链抗体组合文库,筛选后获得与人TROP2结合的亲和力高的TROP2抗体。The present invention screens the anti-TROP2 genetically engineered single-chain antibody from the fully synthetic single-chain human antibody library, obtains the variable region sequence of the antibody, constructs a mutation library through a point mutation kit, and obtains clones with high affinity. The DNA was mixed to assemble a single-chain antibody combinatorial library in a recombinant way, and after screening, a high-affinity TROP2 antibody that binds to human TROP2 was obtained.
本发明提供的抗体可变区氨基酸序列模式为FR1-CDR1-FR2-CDR2-FR3-CDR3-FR4。在本申请中,FR和CDR的区域划分基于Kabat命名系统。在此,FR1~4代表4个框架区域,CDR1~3代表3个高变区。FR1~4可以是从恒定区序列分离而来(比如人免疫球蛋白轻重链类、亚类或亚家族最常用的氨基酸),也可以是从单独的人抗体框架区分离而来或从不同的框架区基因组合而来。The amino acid sequence pattern of the antibody variable region provided by the present invention is FR1-CDR1-FR2-CDR2-FR3-CDR3-FR4. In this application, the division of regions of FR and CDR is based on the Kabat nomenclature system. Here, FR1-4 represent four framework regions, and CDR1-3 represent three hypervariable regions. FR1-4 can be isolated from the constant region sequence (such as the most commonly used amino acids of human immunoglobulin light and heavy chain class, subclass or subfamily), or can be isolated from a single human antibody framework region or from different Combination of framework region genes.
进一步地,本发明提供一种TROP2抗体,其包括重链可变区和轻链可变区,所述重链可变 区的CDR1具有SEQ ID NO.1、7任一所示的氨基酸序列,CDR2具有SEQ ID NO.2、8、9任一所示的氨基酸序列,CDR3具有SEQ ID NO.3、10任一所示的氨基酸序列;Further, the present invention provides a TROP2 antibody, which includes a heavy chain variable region and a light chain variable region, and the CDR1 of the heavy chain variable region has the amino acid sequence shown in any one of SEQ ID NO.1, 7, CDR2 has the amino acid sequence shown in any one of SEQ ID NO.2,8,9, and CDR3 has the amino acid sequence shown in any one of SEQ ID NO.3,10;
轻链可变区的CDR1具有SEQ ID NO.4、11、12任一所示的氨基酸序列,CDR2具有SEQ ID NO.5、13、14任一所示的氨基酸序列,CDR3具有SEQ ID NO.6、15任一所示的氨基酸序列。The CDR1 of the light chain variable region has the amino acid sequence shown in any one of SEQ ID NO.4, 11, 12, the CDR2 has the amino acid sequence shown in any one of SEQ ID NO.5, 13, 14, and the CDR3 has the amino acid sequence shown in SEQ ID NO. The amino acid sequence shown in any one of 6 and 15.
经进一步筛选,本发明提供以下具有更高的TROP2结合亲和力的TROP2抗体,其重链可变区的CDR为如下任一种:After further screening, the present invention provides the following TROP2 antibodies with higher TROP2 binding affinity, and the CDR of the heavy chain variable region is any of the following:
(1)CDR1具有SEQ ID NO.1所示的氨基酸序列,CDR2具有SEQ ID NO.2所示的氨基酸序列,CDR3具有SEQ ID NO.3所示的氨基酸序列;(1) CDR1 has the amino acid sequence shown in SEQ ID NO.1, CDR2 has the amino acid sequence shown in SEQ ID NO.2, and CDR3 has the amino acid sequence shown in SEQ ID NO.3;
(2)CDR1具有SEQ ID NO.7所示的氨基酸序列,CDR2具有SEQ ID NO.9所示的氨基酸序列,CDR3具有SEQ ID NO.3所示的氨基酸序列;(2) CDR1 has the amino acid sequence shown in SEQ ID NO.7, CDR2 has the amino acid sequence shown in SEQ ID NO.9, and CDR3 has the amino acid sequence shown in SEQ ID NO.3;
(3)CDR1具有SEQ ID NO.7所示的氨基酸序列,CDR2具有SEQ ID NO.8所示的氨基酸序列,CDR3具有SEQ ID NO.3所示的氨基酸序列;(3) CDR1 has the amino acid sequence shown in SEQ ID NO.7, CDR2 has the amino acid sequence shown in SEQ ID NO.8, and CDR3 has the amino acid sequence shown in SEQ ID NO.3;
(4)CDR1具有SEQ ID NO.7所示的氨基酸序列,CDR2具有SEQ ID NO.8所示的氨基酸序列,CDR3具有SEQ ID NO.10所示的氨基酸序列;(4) CDR1 has the amino acid sequence shown in SEQ ID NO.7, CDR2 has the amino acid sequence shown in SEQ ID NO.8, and CDR3 has the amino acid sequence shown in SEQ ID NO.10;
轻链可变区的CDR为如下任一种:The CDRs of the light chain variable region are any of the following:
(1)CDR1具有SEQ ID NO.4所示的氨基酸序列,CDR2具有SEQ ID NO.5所示的氨基酸序列,CDR3具有SEQ ID NO.6所示的氨基酸序列;(1) CDR1 has the amino acid sequence shown in SEQ ID NO.4, CDR2 has the amino acid sequence shown in SEQ ID NO.5, and CDR3 has the amino acid sequence shown in SEQ ID NO.6;
(2)CDR1具有SEQ ID NO.4所示的氨基酸序列,CDR2具有SEQ ID NO.13所示的氨基酸序列,CDR3具有SEQ ID NO.15所示的氨基酸序列;(2) CDR1 has the amino acid sequence shown in SEQ ID NO.4, CDR2 has the amino acid sequence shown in SEQ ID NO.13, and CDR3 has the amino acid sequence shown in SEQ ID NO.15;
(3)CDR1具有SEQ ID NO.11所示的氨基酸序列,CDR2具有SEQ ID NO.13所示的氨基酸序列,CDR3具有SEQ ID NO.15所示的氨基酸序列;(3) CDR1 has the amino acid sequence shown in SEQ ID NO.11, CDR2 has the amino acid sequence shown in SEQ ID NO.13, and CDR3 has the amino acid sequence shown in SEQ ID NO.15;
(4)CDR1具有SEQ ID NO.12所示的氨基酸序列,CDR2具有SEQ ID NO.13所示的氨基酸序列,CDR3具有SEQ ID NO.15所示的氨基酸序列;(4) CDR1 has the amino acid sequence shown in SEQ ID NO.12, CDR2 has the amino acid sequence shown in SEQ ID NO.13, and CDR3 has the amino acid sequence shown in SEQ ID NO.15;
(5)CDR1具有SEQ ID NO.12所示的氨基酸序列,CDR2具有SEQ ID NO.14所示的氨基酸序列,CDR3具有SEQ ID NO.15所示的氨基酸序列;(5) CDR1 has the amino acid sequence shown in SEQ ID NO.12, CDR2 has the amino acid sequence shown in SEQ ID NO.14, and CDR3 has the amino acid sequence shown in SEQ ID NO.15;
(6)CDR1具有SEQ ID NO.4所示的氨基酸序列,CDR2具有SEQ ID NO.14所示的氨基酸序列,CDR3具有SEQ ID NO.15所示的氨基酸序列;(6) CDR1 has the amino acid sequence shown in SEQ ID NO.4, CDR2 has the amino acid sequence shown in SEQ ID NO.14, and CDR3 has the amino acid sequence shown in SEQ ID NO.15;
在上述抗体中,以下抗体具有更高的TROP2结合亲和力,其重链可变区的CDR和轻链可变区的CDR为如下任一种:Among the above-mentioned antibodies, the following antibodies have higher binding affinity to TROP2, and the CDRs of the heavy chain variable region and the CDRs of the light chain variable region are any of the following:
(1)重链可变区的CDR1具有SEQ ID NO.1所示的氨基酸序列,CDR2具有SEQ ID NO.2所示的氨基酸序列,CDR3具有SEQ ID NO.3所示的氨基酸序列;轻链可变区的CDR1具有SEQ ID NO.4所示的氨基酸序列,CDR2具有SEQ ID NO.5所示的氨基酸序列,CDR3具有SEQ ID NO.6所示的氨基酸序列;(1) CDR1 of the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.1, CDR2 has the amino acid sequence shown in SEQ ID NO.2, and CDR3 has the amino acid sequence shown in SEQ ID NO.3; light chain CDR1 of the variable region has the amino acid sequence shown in SEQ ID NO.4, CDR2 has the amino acid sequence shown in SEQ ID NO.5, and CDR3 has the amino acid sequence shown in SEQ ID NO.6;
(2)重链可变区的CDR1具有SEQ ID NO.7所示的氨基酸序列,CDR2具有SEQ ID NO.8所示的氨基酸序列,CDR3具有SEQ ID NO.3所示的氨基酸序列;轻链可变区的CDR1具有SEQ ID NO.4所示的氨基酸序列,CDR2具有SEQ ID NO.13所示的氨基酸序列,CDR3具有SEQ ID NO.15所示的氨基酸序列;(2) CDR1 of the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.7, CDR2 has the amino acid sequence shown in SEQ ID NO.8, and CDR3 has the amino acid sequence shown in SEQ ID NO.3; light chain CDR1 of the variable region has the amino acid sequence shown in SEQ ID NO.4, CDR2 has the amino acid sequence shown in SEQ ID NO.13, and CDR3 has the amino acid sequence shown in SEQ ID NO.15;
(3)重链可变区的CDR1具有SEQ ID NO.7所示的氨基酸序列,CDR2具有SEQ ID NO.8所 示的氨基酸序列,CDR3具有SEQ ID NO.3所示的氨基酸序列;轻链可变区的CDR1具有SEQ ID NO.12所示的氨基酸序列,CDR2具有SEQ ID NO.13所示的氨基酸序列,CDR3具有SEQ ID NO.15所示的氨基酸序列;(3) CDR1 of the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.7, CDR2 has the amino acid sequence shown in SEQ ID NO.8, and CDR3 has the amino acid sequence shown in SEQ ID NO.3; light chain CDR1 of the variable region has the amino acid sequence shown in SEQ ID NO.12, CDR2 has the amino acid sequence shown in SEQ ID NO.13, and CDR3 has the amino acid sequence shown in SEQ ID NO.15;
(4)重链可变区的CDR1具有SEQ ID NO.7所示的氨基酸序列,CDR2具有SEQ ID NO.8所示的氨基酸序列,CDR3具有SEQ ID NO.3所示的氨基酸序列;轻链可变区的CDR1具有SEQ ID NO.12所示的氨基酸序列,CDR2具有SEQ ID NO.14所示的氨基酸序列,CDR3具有SEQ ID NO.15所示的氨基酸序列。(4) CDR1 of the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.7, CDR2 has the amino acid sequence shown in SEQ ID NO.8, and CDR3 has the amino acid sequence shown in SEQ ID NO.3; light chain CDR1 of the variable region has the amino acid sequence shown in SEQ ID NO.12, CDR2 has the amino acid sequence shown in SEQ ID NO.14, and CDR3 has the amino acid sequence shown in SEQ ID NO.15.
在上述重链和轻链可变区的CDR区的基础上,本发明提供这些TROP2抗体的重链和轻链可变区的序列:On the basis of the CDR regions of the above-mentioned heavy chain and light chain variable regions, the present invention provides the sequences of the heavy chain and light chain variable regions of these TROP2 antibodies:
重链可变区具有SEQ ID NO.16、18-20任一所示的氨基酸序列,轻链可变区具有SEQ ID NO.17、21-25任一所示的氨基酸序列;The heavy chain variable region has the amino acid sequence shown in any one of SEQ ID NO.16, 18-20, and the light chain variable region has the amino acid sequence shown in any one of SEQ ID NO.17, 21-25;
或者,所述重链可变区、轻链可变区与前述序列相比具有满足以下二者中至少一个:a)结合相同抗原表位;b)序列同一性大于70%、80%、85%、90%、97%、98%或99%的氨基酸序列。Alternatively, compared with the aforementioned sequence, the heavy chain variable region and the light chain variable region have at least one of the following two requirements: a) binding to the same antigenic epitope; b) sequence identity greater than 70%, 80%, 85% %, 90%, 97%, 98% or 99% of the amino acid sequence.
进一步地,具有如下可变区序列的抗体表现出更为优异的TROP2结合亲和力:重链可变区具有SEQ ID NO.16所示的氨基酸序列,轻链可变区具有SEQ ID NO.17所示的氨基酸序列;Further, the antibody with the following variable region sequence shows more excellent TROP2 binding affinity: the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.16, and the light chain variable region has the amino acid sequence shown in SEQ ID NO.17 The amino acid sequence shown;
或者,所述重链可变区具有SEQ ID NO.19所示的氨基酸序列,轻链可变区具有SEQ ID NO.21所示的氨基酸序列;Alternatively, the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.19, and the light chain variable region has the amino acid sequence shown in SEQ ID NO.21;
或者,所述重链可变区具有SEQ ID NO.19所示的氨基酸序列,轻链可变区具有SEQ ID NO.23所示的氨基酸序列;Alternatively, the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.19, and the light chain variable region has the amino acid sequence shown in SEQ ID NO.23;
或者,所述重链可变区具有SEQ ID NO.19所示的氨基酸序列,轻链可变区具有SEQ ID NO.24所示的氨基酸序列。Alternatively, the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.19, and the light chain variable region has the amino acid sequence shown in SEQ ID NO.24.
可选的,以上所述的TROP2抗体的重链的Fc片段为人或人源化抗体的Fc片段,所述人或人源化抗体为IgG1、IgG2、IgA、IgE、IgM、IgG4或IgD。Optionally, the Fc fragment of the heavy chain of the above-mentioned TROP2 antibody is the Fc fragment of a human or humanized antibody, and the human or humanized antibody is IgG1, IgG2, IgA, IgE, IgM, IgG4 or IgD.
优选地,TROP2抗体的重链具有SEQ ID NO.27、29任一所示的氨基酸序列,轻链具有SEQ ID NO.28、30任一所示的氨基酸序列;或者,所述重链、轻链与前述序列相比具有满足以下二者中至少一个:a)结合相同抗原表位;b)序列同一性大于70%、80%、85%、90%、97%、98%或99%的氨基酸序列。Preferably, the heavy chain of the TROP2 antibody has the amino acid sequence shown in any one of SEQ ID NO.27, 29, and the light chain has the amino acid sequence shown in any one of SEQ ID NO.28, 30; or, the heavy chain, light chain Compared with the aforementioned sequence, the chain has at least one of the following two: a) binding to the same antigenic epitope; b) sequence identity greater than 70%, 80%, 85%, 90%, 97%, 98% or 99% amino acid sequence.
本发明提供具有如下重链和轻链全长序列的TROP2抗体:重链具有SEQ ID NO.27所示的氨基酸序列,轻链具有SEQ ID NO.28所示的氨基酸序列;或者,重链具有SEQ ID NO.29所示的氨基酸序列,轻链具有SEQ ID NO.30所示的氨基酸序列。The present invention provides a TROP2 antibody having the following heavy chain and light chain full-length sequences: the heavy chain has the amino acid sequence shown in SEQ ID NO.27, and the light chain has the amino acid sequence shown in SEQ ID NO.28; or, the heavy chain has the amino acid sequence shown in SEQ ID NO.28; The amino acid sequence shown in SEQ ID NO.29, the light chain has the amino acid sequence shown in SEQ ID NO.30.
本发明提供的人源抗人TROP2抗体以4.35nM-7.5nM的亲和力结合于人TROP2。该抗体结合于表达TROP2的细胞,所述的细胞可以为人上皮恶性肿瘤(胃癌、宫颈癌、乳腺癌、肺癌、前列腺癌、结肠癌、食道癌、胰癌、头颈癌、卵巢癌、子宫内粘膜浆液性乳头癌等肿瘤)细胞。The human anti-human TROP2 antibody provided by the invention binds to human TROP2 with an affinity of 4.35nM-7.5nM. The antibody binds to cells expressing TROP2, and the cells can be human epithelial malignant tumors (gastric cancer, cervical cancer, breast cancer, lung cancer, prostate cancer, colon cancer, esophageal cancer, pancreatic cancer, head and neck cancer, ovarian cancer, intrauterine mucosa Serous papillary carcinoma and other tumors) cells.
本发明还提供含有以上所述的TROP2抗体的单链抗体、Fab抗体、微型抗体、嵌合抗体、全抗体免疫球蛋白IgG1、IgG2、IgA、IgE、IgM、IgG4或IgD、双特异性抗体、多特异性抗体。The present invention also provides single-chain antibodies, Fab antibodies, miniature antibodies, chimeric antibodies, full antibody immunoglobulin IgG1, IgG2, IgA, IgE, IgM, IgG4 or IgD, bispecific antibodies, Multispecific Antibodies.
进一步地,本发明提供结合TROP2和CD3的双特异性抗体,其包括:第一结构域,结合滋养层细胞表面抗原2,以及,第二结构域,结合T细胞表面抗原CD3,其中,第一结构域包括重 链可变区和轻链可变区,重链可变区和轻链可变区为如以上所述的TROP2抗体的重链可变区和轻链可变区。Further, the present invention provides a bispecific antibody that binds to TROP2 and CD3, which includes: a first domain that binds to trophoblast cell surface antigen 2, and a second domain that binds to the T cell surface antigen CD3, wherein the first The domains include a heavy chain variable region and a light chain variable region, which are the heavy chain variable region and light chain variable region of the TROP2 antibody described above.
优选地,所述双特异性抗体的第一结构域为2个通过二硫键连接的完整的轻链-重链对,其重链和轻链的氨基酸序列为以上所述的TROP2抗体的重链和轻链的氨基酸序列。Preferably, the first structural domain of the bispecific antibody is two complete light chain-heavy chain pairs connected by disulfide bonds, and the amino acid sequences of the heavy chain and the light chain are the heavy chain of the above-mentioned TROP2 antibody. Amino acid sequences of chain and light chain.
对于结合CD3抗原的第二结构域,其重链可变区优选具有SEQ ID NO.31所示的氨基酸序列,轻链可变区优选具有SEQ ID NO.32所示的氨基酸序列;For the second structural domain that binds to the CD3 antigen, the heavy chain variable region preferably has the amino acid sequence shown in SEQ ID NO.31, and the light chain variable region preferably has the amino acid sequence shown in SEQ ID NO.32;
优选地,所述第二结构域的轻链可变区和重链可变区通过连接肽连接为单链抗体,所述单链抗体具有SEQ ID NO.33所示的氨基酸序列。Preferably, the light chain variable region and the heavy chain variable region of the second structural domain are connected into a single-chain antibody through a connecting peptide, and the single-chain antibody has the amino acid sequence shown in SEQ ID NO.33.
本发明的双特异性抗体优选设计为以下结构:第一结构域包含2个完整的轻链-重链对,第二结构域包含2个单链抗体,通过如下任意一种方式连接而成的对称结构:The bispecific antibody of the present invention is preferably designed with the following structure: the first domain contains two complete light chain-heavy chain pairs, and the second domain contains two single-chain antibodies, which are connected by any of the following methods Symmetrical structure:
(1)所述第二结构域的2个单链抗体的C端分别通过连接肽与所述第一结构域的2条重链的N端连接;(1) The C-terminals of the two single-chain antibodies of the second domain are respectively connected to the N-terminals of the two heavy chains of the first domain through a connecting peptide;
(2)所述第二结构域的2个单链抗体的N端分别通过连接肽与所述第一结构域的2条重链的C端连接;(2) The N-terminals of the two single-chain antibodies of the second domain are respectively connected to the C-terminals of the two heavy chains of the first domain through a connecting peptide;
本发明发现,针对上述第一结构域和第二结构域的序列,具有上述对称结构的双特异性抗体与其它结构的双特异性抗体相比,能够更好地保留第一结构域和第二结构域的原抗体的特异性抗原结合能力,同时具有优异的结合TROP2和CD3的生物学功能,在生产工艺和药用性能等方面具有明显优势。本发明开发了具有上述抗体分子结构的结合TROP2和CD3的双特异性抗体,该双特异性抗体具有特异性的靶向作用,并能够高效激发具有导向性的免疫反应,杀伤肿瘤细胞。The present invention finds that for the sequences of the above-mentioned first domain and the second domain, the bispecific antibody with the above-mentioned symmetrical structure can better retain the first domain and the second domain than bispecific antibodies with other structures. The specific antigen-binding ability of the primary antibody of the structural domain, and the excellent biological function of binding TROP2 and CD3, have obvious advantages in production technology and medicinal properties. The present invention has developed a bispecific antibody binding to TROP2 and CD3 having the above-mentioned antibody molecular structure. The bispecific antibody has a specific targeting effect and can efficiently stimulate a oriented immune response to kill tumor cells.
优选地,用于第一结构域和第二结构域连接的连接肽的氨基酸序列为(GGGGX)n,其中,X为Gly或Ser,n为1-4的自然数。Preferably, the amino acid sequence of the connecting peptide used to connect the first domain and the second domain is (GGGGX)n, wherein X is Gly or Ser, and n is a natural number of 1-4.
作为本发明的一种优选实施方式,所述连接肽的氨基酸序列如SEQ ID NO.34所示。As a preferred embodiment of the present invention, the amino acid sequence of the connecting peptide is shown in SEQ ID NO.34.
作为具有上述结构的双特异性抗体的示例,在上述TROP2抗体和CD3抗体的基础上,本发明构建了同时结合TROP2和CD3的双特异性抗体,其结构和序列如下:As an example of a bispecific antibody with the above structure, on the basis of the above-mentioned TROP2 antibody and CD3 antibody, the present invention constructs a bispecific antibody that simultaneously binds to TROP2 and CD3, and its structure and sequence are as follows:
所述第一结构域的重链与所述第二结构域经连接肽连接后具有SEQ ID NO.35或36所示的氨基酸序列,轻链具有SEQ ID NO.28或30所示的氨基酸序列。The heavy chain of the first structural domain has the amino acid sequence shown in SEQ ID NO.35 or 36 after connecting the second structural domain with the connecting peptide, and the light chain has the amino acid sequence shown in SEQ ID NO.28 or 30 .
优选地,所述第一结构域的重链与所述第二结构域经连接肽连接后具有SEQ ID NO.35所示的氨基酸序列,轻链具有SEQ ID NO.28所示的氨基酸序列,或者,所述第一结构域的重链与所述第二结构域经连接肽连接后具有SEQ ID NO.36所示的氨基酸序列,轻链具有SEQ ID NO.30所示的氨基酸序列。Preferably, the heavy chain of the first structural domain has the amino acid sequence shown in SEQ ID NO.35 after connecting the second structural domain with the connecting peptide, and the light chain has the amino acid sequence shown in SEQ ID NO.28, Alternatively, the heavy chain of the first structural domain and the second structural domain have the amino acid sequence shown in SEQ ID NO.36 after connecting the second structural domain, and the light chain has the amino acid sequence shown in SEQ ID NO.30.
以上所公开和要求保护的SEQ ID NO.1-36所示序列包括“保守序列修饰”,即不明显影响和改变所述抗体或含有所述氨基酸序列抗体的结合特征的核苷酸和氨基酸序列修饰。所述保守序列修饰包括核苷酸或氨基酸替换、添加或缺失。可以通过本领域的标准技术,如定点诱变和PCR介导的诱变等将修饰导入SEQ ID NO.1-36中,保守氨基酸替换包括氨基酸残基被具有相似侧链的氨基酸残基或其他氨基酸残基代替。本领域中,已经定义了具有相似侧链的氨基酸残基的家族。这些家族包括具有碱性侧链的氨基酸(如赖氨酸、精氨酸、组氨酸),具有酸性侧链的氨基酸(如天冬氨酸、谷氨酸),具有不带电的极性侧链的氨基酸(如甘氨酸、天冬酰胺、 谷氨酰胺、丝氨酸、苏氨酸、酪氨酸、半胱氨酸、色氨酸),具有非极性侧链的氨基酸(如丙氨酸、缬氨酸、亮氨酸、异亮氨酸、脯氨酸、苯丙氨酸、甲硫氨酸),具有β分支侧链的氨基酸(如苏氨酸、缬氨酸、异亮氨酸)和具有芳香侧链的氨基酸(如酪氨酸、苯丙氨酸、色氨酸、组氨酸)。因此,优选用来自于同一侧链家族的另一种氨基酸残基代替人抗TROP2抗体中的非必须氨基酸残基。The sequences shown in SEQ ID NO.1-36 disclosed and claimed above include "conservative sequence modifications", that is, nucleotide and amino acid sequences that do not significantly affect and change the binding characteristics of the antibody or the antibody containing the amino acid sequence grooming. Such conservative sequence modifications include nucleotide or amino acid substitutions, additions or deletions. Modifications can be introduced into SEQ ID NO.1-36 by standard techniques in the art, such as site-directed mutagenesis and PCR-mediated mutagenesis. Conservative amino acid substitutions include amino acid residues being replaced by amino acid residues with similar side chains or other amino acid residue substitution. In the art, families of amino acid residues having similar side chains have been defined. These families include amino acids with basic side chains (such as lysine, arginine, histidine), amino acids with acidic side chains (such as aspartic acid, glutamic acid), and uncharged polar side chains. Chain amino acids (such as glycine, asparagine, glutamine, serine, threonine, tyrosine, cysteine, tryptophan), amino acids with non-polar side chains (such as alanine, valine amino acid, leucine, isoleucine, proline, phenylalanine, methionine), amino acids with β-branched side chains (such as threonine, valine, isoleucine) and Amino acids with aromatic side chains (eg, tyrosine, phenylalanine, tryptophan, histidine). Therefore, it is preferred to replace a non-essential amino acid residue in a human anti-TROP2 antibody with another amino acid residue from the same side chain family.
因此,以上公开的具有所述氨基酸序列的抗体和/或含有以上公开的氨基酸序列的抗体包括基本上由经保守序列修饰的相似序列编码的,或含有经保守序列修饰的相似序列的抗体,均应视为本发明的范畴。Therefore, the antibody having the amino acid sequence disclosed above and/or the antibody comprising the amino acid sequence disclosed above includes antibodies substantially encoded by similar sequences modified by conservative sequences, or antibodies containing similar sequences modified by conservative sequences, both should be regarded as the scope of the present invention.
本发明还提供编码所述TROP2抗体的核酸分子以及编码所述结合TROP2和CD3的双特异性抗体的核酸分子。The present invention also provides nucleic acid molecules encoding the TROP2 antibody and nucleic acid molecules encoding the bispecific antibody binding to TROP2 and CD3.
考虑到密码子的简并性,编码本发明所述抗体的基因可在其编码区,在不改变氨基酸序列的条件下,对编码上述抗体的基因序列进行修改,获得编码相同抗体的基因。本领域技术人员可以根据表达抗体宿主的密码子偏爱性,人工合成改造基因,以提高抗体的表达效率。Considering the degeneracy of codons, the gene encoding the antibody of the present invention can be modified in its coding region without changing the amino acid sequence to obtain the gene encoding the same antibody. Those skilled in the art can artificially synthesize and modify the gene according to the codon preference of the host expressing the antibody to improve the expression efficiency of the antibody.
本发明还提供含有所述核酸分子的生物材料,所述生物材料包括重组DNA、表达盒、载体、宿主细胞、工程菌或细胞系。The present invention also provides biological materials containing the nucleic acid molecules, and the biological materials include recombinant DNA, expression cassettes, vectors, host cells, engineering bacteria or cell lines.
其中,所述载体包括但不限于克隆载体、表达载体,可为质粒载体、病毒载体、转座子等载体。Wherein, the vectors include but are not limited to cloning vectors and expression vectors, and may be vectors such as plasmid vectors, viral vectors, and transposons.
所述宿主细胞或细胞系可以为来源于微生物或动物的细胞或细胞系。The host cell or cell line may be a cell or cell line derived from microorganisms or animals.
本发明还提供所述TROP2抗体或所述结合TROP2和CD3的双特异性抗体的制备方法,其包括:将编码所述抗体的核酸导入宿主细胞中,获得稳定表达所述双特异性抗体的宿主细胞;培养宿主细胞,经分离纯化获得所述抗体。The present invention also provides a method for preparing the TROP2 antibody or the bispecific antibody binding to TROP2 and CD3, which includes: introducing the nucleic acid encoding the antibody into a host cell to obtain a host stably expressing the bispecific antibody Cells; host cells are cultured, and the antibody is obtained through separation and purification.
在制备所述TROP2抗体或所述结合TROP2和CD3的双特异性抗体时,本领域技术人员可根据需要选择本领域常规的宿主细胞、表达载体、将表达载体导入宿主细胞的方法以及抗体的分离纯化方法。When preparing the TROP2 antibody or the bispecific antibody that binds to TROP2 and CD3, those skilled in the art can select conventional host cells, expression vectors, methods for introducing expression vectors into host cells, and antibody isolation as required. Purification method.
基于本发明提供的TROP2抗体以及结合TROP2和CD3的双特异性抗体的功能,本发明提供TROP2抗体、结合TROP2和CD3的双特异性抗体、编码所述抗体的核酸分子、含有所述核酸分子的生物材料的如下任一种应用:Based on the functions of the TROP2 antibody and the bispecific antibody binding to TROP2 and CD3 provided by the present invention, the present invention provides a TROP2 antibody, a bispecific antibody binding to TROP2 and CD3, a nucleic acid molecule encoding the antibody, and a nucleic acid molecule containing the nucleic acid molecule. Any of the following applications of biomaterials:
(1)在制备用于诊断、预防或治疗TROP2表达的相关疾病的药物中的应用;(1) Application in the preparation of medicines for diagnosing, preventing or treating diseases related to TROP2 expression;
(2)在制备用于诊断、预防或治疗以TROP2为靶标的疾病的药物中的应用;(2) Application in the preparation of drugs for diagnosing, preventing or treating diseases targeting TROP2;
(3)在制备用于杀伤TROP2表达的细胞的药物中的应用;(3) Application in the preparation of drugs for killing cells expressing TROP2;
(4)在制备TROP2和/或CD3的检测试剂中的应用;(4) Application in the preparation of detection reagents for TROP2 and/or CD3;
(5)在制备适用于CAR-T疗法的相关试剂中的应用;(5) Application in the preparation of related reagents suitable for CAR-T therapy;
(6)在制备免疫毒素或标记抗体中的应用。(6) Application in preparation of immunotoxin or labeled antibody.
以上所述的TROP2表达的相关疾病优选为高表达/过度表达TROP2的肿瘤,特别是表达TROP2的上皮恶性肿瘤(包括但不限于胃癌、宫颈癌、乳腺癌、肺癌、前列腺癌、结肠癌、食道癌、胰癌、头颈癌、卵巢癌、子宫内粘膜浆液性乳头癌等肿瘤)。The above-mentioned diseases related to TROP2 expression are preferably tumors with high expression/overexpression of TROP2, especially epithelial malignant tumors expressing TROP2 (including but not limited to gastric cancer, cervical cancer, breast cancer, lung cancer, prostate cancer, colon cancer, esophageal cancer, etc.) Cancer, pancreatic cancer, head and neck cancer, ovarian cancer, intrauterine mucosal serous papillary cancer and other tumors).
优选地,所述药物为抗肿瘤药物。Preferably, the drug is an antineoplastic drug.
以上所述的标记抗体可为放射性同位素标记抗体。The above-mentioned labeled antibody may be a radioisotope-labeled antibody.
本发明提供的双特异性抗体本身可用于治疗和诊断。抗体可以被标记、交联或偶联及与其他蛋白或多肽分子融合表达形成复合物(如细胞毒性物质、放射性毒素和/或化学分子等)用于诊断和治疗。The bispecific antibodies provided by the invention are useful in therapy and diagnosis per se. Antibodies can be labeled, cross-linked or conjugated and fused with other proteins or polypeptide molecules to form complexes (such as cytotoxic substances, radioactive toxins and/or chemical molecules, etc.) for diagnosis and treatment.
本发明提供包含所述TROP2抗体或所述结合TROP2和CD3的双特异性抗体的多特异性抗体、融合蛋白、免疫毒素、药物或检测试剂。The present invention provides a multispecific antibody, a fusion protein, an immunotoxin, a drug or a detection reagent comprising the TROP2 antibody or the bispecific antibody binding to TROP2 and CD3.
以上所述的免疫毒素包含以各种形式连接于细胞毒性剂的TROP2抗体或双特异性抗体。The immunotoxins described above comprise TROP2 antibodies or bispecific antibodies linked to cytotoxic agents in various formats.
所述的各种连接形式为抗体被标记、体外交联或分子偶联。所述细胞毒性剂包括化学分子、放射性同位素、多肽、毒素及其他对细胞具有杀伤或诱导细胞死亡特性的物质。The various linking forms are antibody labeling, in vitro cross-linking or molecular coupling. The cytotoxic agents include chemical molecules, radioactive isotopes, polypeptides, toxins and other substances that can kill or induce cell death.
以上所述的融合蛋白,包含本发明提供的上述TROP2抗体或双特异性抗体以及具有某种功能的其他蛋白或多肽分子的复合物。The above-mentioned fusion protein comprises the complex of the above-mentioned TROP2 antibody or bispecific antibody provided by the present invention and other proteins or polypeptide molecules with certain functions.
具体地,所述的融合蛋白可为将抗体基因与免疫毒素或细胞因子基因连接构建重组表达载体,通过哺乳动物细胞或其他表达系统获得重组融合蛋白分子。Specifically, the fusion protein can be a recombinant expression vector constructed by linking antibody genes with immunotoxin or cytokine genes, and the recombinant fusion protein molecule can be obtained through mammalian cells or other expression systems.
以上所述的所述药物、检测试剂还可包含药学领域和检测试剂领域允许的其它有效成分或辅料(例如:抗体的组分和药理学上可接受的递送分子或溶液。其中,治疗用组分为无菌,可低温冻干)。The above-mentioned drugs and detection reagents may also contain other active ingredients or adjuvants allowed in the field of pharmacy and detection reagents (such as: antibody components and pharmacologically acceptable delivery molecules or solutions. Among them, the therapeutic group Divided into sterile, can be freeze-dried at low temperature).
本发明提供的抗TROP2的抗体及其双特异性抗体,能够抑制TROP2所诱导的一种或多种生物学活性。这些抗体通过与TROP2结合后复合物被内化从而消耗细胞表面的TROP2而发挥作用。TROP2拮抗剂所具有的所有干扰功能均应平等地视为本发明的目的。The anti-TROP2 antibody and bispecific antibody provided by the present invention can inhibit one or more biological activities induced by TROP2. These antibodies function by depleting TROP2 on the cell surface after binding to TROP2 and internalizing the complex. All interfering functions possessed by TROP2 antagonists are equally considered objects of the present invention.
本发明的有益效果在于:The beneficial effects of the present invention are:
本发明通过基因工程和噬菌体表面展示文库技术,从天然全人序列的单链抗体库中筛选出抗TROP2的特异性抗体,本发明提供的TROP2抗体具有良好的结合TROP2的能力,这些抗体抗体经ELISA检测及流式细胞仪检测,可与MDA-MB-231、MDA-MB-468、MCF7等细胞表面的TROP2特异性结合,表明靶标特异性良好,结合于人TROP2的亲和力为4.35nM-7.5nM,具有良好的治疗应用前景。The present invention uses genetic engineering and phage surface display library technology to screen specific anti-TROP2 antibodies from the single-chain antibody library of natural full human sequences. The TROP2 antibodies provided by the present invention have good ability to bind TROP2. ELISA detection and flow cytometry detection can specifically bind to TROP2 on the surface of MDA-MB-231, MDA-MB-468, MCF7 and other cells, indicating that the target specificity is good, and the binding affinity to human TROP2 is 4.35nM-7.5 nM, has a good prospect for therapeutic application.
在此基础上,本发明利用基因工程和抗体工程方法构建包含单链抗体和完整单克隆抗体结构的结合TROP2和CD3的双特异性抗体,该双特异性抗体融合蛋白保留了完整的单克隆抗体结构,而且具有高度稳定的对称结构,更好地保留了抗CD3单链抗体和抗TROP2单克隆抗体的生物学功能,实现了一个双特异性抗体分子同时具有优异的抗TROP2和抗CD3两个单克隆抗体的生物学功能,能够在肿瘤细胞和免疫效应细胞之间搭建桥梁,有效激活免疫效应细胞和导向性免疫反应,显著增强了免疫细胞杀伤肿瘤细胞的功效,同时最大程度地降低了ADCC效应,具有较高的安全性。此外,本发明提供的双特异性抗体由于具有结构完全对称的特点,在进行宿主表达时,不会产生其它结构的蛋白异构体,从而大大降低了提取和纯化工艺的难度,具有制备简单、产量高的优势,在肿瘤的免疫治疗中具有广阔的应用前景。On this basis, the present invention uses genetic engineering and antibody engineering methods to construct a bispecific antibody that binds to TROP2 and CD3 comprising a single-chain antibody and a complete monoclonal antibody structure, and the bispecific antibody fusion protein retains a complete monoclonal antibody structure, and has a highly stable symmetrical structure, which better retains the biological functions of anti-CD3 single-chain antibody and anti-TROP2 monoclonal antibody, and realizes a bispecific antibody molecule with excellent anti-TROP2 and anti-CD3 The biological function of monoclonal antibodies can build a bridge between tumor cells and immune effector cells, effectively activate immune effector cells and guide immune responses, significantly enhance the efficacy of immune cells in killing tumor cells, and at the same time minimize ADCC effect, with higher security. In addition, due to the completely symmetrical structure of the bispecific antibody provided by the present invention, it will not produce protein isomers of other structures when expressed in the host, thereby greatly reducing the difficulty of extraction and purification processes, and has the advantages of simple preparation, The advantage of high yield has broad application prospects in tumor immunotherapy.
本发明为研发针对TROP2靶标的抗肿瘤抗体药物、CAR-T试剂开发、预防和治疗提供了人TROP2特异性抗体候选分子。本发明的双特异性抗体能够同时结合免疫细胞和肿瘤细胞,导向T免疫反应,特异性有效杀伤肿瘤细胞,可研发为上皮恶性肿瘤的抗体药物。The present invention provides human TROP2-specific antibody candidate molecules for the development of anti-tumor antibody drugs targeting TROP2 targets, CAR-T reagent development, prevention and treatment. The bispecific antibody of the present invention can simultaneously bind immune cells and tumor cells, guide T immune response, specifically and effectively kill tumor cells, and can be developed as an antibody drug for epithelial malignant tumors.
附图说明Description of drawings
图1为本发明背景技术中TROP2的蛋白结构及TCR结构示意图,其中,A为TROP2抗原的结构,来源:Goldenberg DM,Stein R,Sharkey RM.The emergence of trophoblast cell-surface antigen 2(TROP-2)as a novel cancer target.Oncotarget.2018 Jun 22;9(48):28989-29006.doi:10.18632/oncotarget.25615.PMID:29989029;PMCID:PMC6034748;B为T细胞受体(TCR)复合体结构及其中CD3的组成。来源:https://www.researchgate.net/publication/299549376。Figure 1 is a schematic diagram of the protein structure and TCR structure of TROP2 in the background technology of the present invention, wherein, A is the structure of the TROP2 antigen, source: Goldenberg DM, Stein R, Sharkey RM.The emergence of trophoblast cell-surface antigen 2 (TROP-2 )as a novel cancer target.Oncotarget.2018 Jun 22;9(48):28989-29006.doi:10.18632/oncotarget.25615.PMID:29989029;PMCID:PMC6034748;B is the T cell receptor (TCR) complex structure And the composition of CD3. Source: https://www.researchgate.net/publication/299549376.
图2为本发明实施例2中流式细胞仪(FACS)分析TROP2与先导克隆1F7的结合,其中,Figure 2 is the flow cytometry (FACS) analysis of the combination of TROP2 and the lead clone 1F7 in Example 2 of the present invention, wherein,
A:阴性对照;B:阳性对照;C:候选克隆IF7。A: negative control; B: positive control; C: candidate clone IF7.
图3为本发明实施例3中等离子共振(SPR)技术分析1F7及其亲和力成熟突变体F7A与人及食蟹猴TROP2的亲和力,其中纵坐标为结合反应单位(RU)。Fig. 3 is the analysis of the affinity of 1F7 and its affinity matured mutant F7A to human and cynomolgus TROP2 by plasmon resonance (SPR) technology in Example 3 of the present invention, where the ordinate is the binding reaction unit (RU).
图4为本发明实施例4中基于FIST平台构建的抗TROP2×CD3双特异性抗体结构示意图,其中,A:以N端融合(nFIST)构建的双抗:抗-CD3单链抗体融合于抗TROP2抗体VH的N端;B:以C端融合(cFIST)构建的双抗:抗-CD3单链抗体融合于抗TROP2抗体Fc的C端。Figure 4 is a schematic diagram of the structure of the anti-TROP2×CD3 bispecific antibody constructed based on the FIST platform in Example 4 of the present invention, wherein, A: the double antibody constructed with N-terminal fusion (nFIST): the anti-CD3 single chain antibody is fused to the anti-CD3 The N-terminal of the VH of the TROP2 antibody; B: the double antibody constructed by C-terminal fusion (cFIST): the anti-CD3 single-chain antibody is fused to the C-terminal of the Fc of the anti-TROP2 antibody.
图5为本发明实施例4中SPR分析单链抗体K3与CD3的亲和力。Fig. 5 is the SPR analysis of the affinity of the single-chain antibody K3 to CD3 in Example 4 of the present invention.
图6为本发明实施例5中双特异抗体F7AK3和1F7K3的SDS-PAGE电泳图,其中,A和C为还原SDS-PAGE电泳;B和D为非还原SDS-PAGE电泳;A和B为1F7 K3双特异抗体SDS-PAGE电泳结果;C和D为F7AK3双特异抗体SDS-PAGE电泳结果;泳道M代表蛋白分子量标准,泳道1为目的蛋白。Figure 6 is the SDS-PAGE electrophoresis of bispecific antibodies F7AK3 and 1F7K3 in Example 5 of the present invention, wherein A and C are reducing SDS-PAGE electrophoresis; B and D are non-reducing SDS-PAGE electrophoresis; A and B are 1F7 SDS-PAGE electrophoresis results of K3 bispecific antibody; C and D are SDS-PAGE electrophoresis results of F7AK3 bispecific antibody; lane M represents protein molecular weight standard, and lane 1 is target protein.
图7为本发明实施例5中纯化的双特异抗体F7AK3和K3F7A的HPLC-SEC纯度分析峰形,其中,A为双特异抗体F7AK3;B为双特异抗体1F7 K3。Fig. 7 is the HPLC-SEC purity analysis peak shape of the bispecific antibodies F7AK3 and K3F7A purified in Example 5 of the present invention, wherein, A is the bispecific antibody F7AK3; B is the bispecific antibody 1F7 K3.
图8为本发明实施例6中流式细胞仪分析F7AK3与TROP2的结合以及F7AK3与T细胞的结合,其中,A:流式细胞术分析F7AK3对TROP2细胞系的结合;B-G:梯度分析F7AK3对TROP2各细胞系的结合能力;Fig. 8 is the combination of F7AK3 and TROP2 analyzed by flow cytometry and the combination of F7AK3 and T cells in Example 6 of the present invention, wherein, A: flow cytometry analysis of the combination of F7AK3 to TROP2 cell lines; B-G: gradient analysis of F7AK3 to TROP2 The binding capacity of each cell line;
图9为本发明实施例6中F7AK3对TROP2阳性细胞及T细胞的桥接作用。Figure 9 shows the bridging effect of F7AK3 on TROP2 positive cells and T cells in Example 6 of the present invention.
图10为本发明实施例7中F7AK3双抗对TROP2抗原的结合介导T细胞对人乳腺癌细胞(MCF、MDA-MB-231、MDA-MB-468、HCC1395)的杀伤能力检测,其中,A、B、C、D分别为MCF、MDA-MB-231、MDA-MB-468、HCC1395细胞。Figure 10 is the detection of the killing ability of T cells on human breast cancer cells (MCF, MDA-MB-231, MDA-MB-468, HCC1395) mediated by the binding of F7AK3 double antibody to TROP2 antigen in Example 7 of the present invention, wherein, A, B, C, and D are MCF, MDA-MB-231, MDA-MB-468, and HCC1395 cells, respectively.
具体实施方式detailed description
以下实施例用于说明本发明,但不用来限制本发明的范围。The following examples are used to illustrate the present invention, but are not intended to limit the scope of the present invention.
实施例1 从天然人抗体噬菌体表面呈现文库中筛选抗人TROP2抗体Example 1 Screening of anti-human TROP2 antibody from natural human antibody phage surface display library
抗体库技术是一种将某种动物(包括人)的所有抗体可变区基因克隆到质粒或噬菌体中,后者感染大肠杆菌后,抗体片段表达于噬菌体颗粒表面,或者大肠杆菌周质、胞浆中。然后用靶标抗原从抗体库中筛选出携带特异抗体基因的克隆,从而获得相应的特异性抗体的技术。从抗体库中已经筛选多种基础研究和临床研发中需要的的抗体,如肿瘤相关的膜蛋白抗原、与自身免疫病相关的自身抗原、抵抗病毒性疾病的病毒抗原的抗体。这些显示出抗体库技术在基础研究和抗体药物研发中的巨大应用潜力。特别的,从人的抗体库中得到全人源的单克隆抗体,克服了难以用鼠杂交瘤技术获得人源单抗的障碍;由于人抗体序列的高度保守性,这些抗体对人体自身免疫系统的免疫原性远低于来源于动物的抗体,因此更安全。Antibody library technology is a method of cloning all antibody variable region genes of a certain animal (including humans) into plasmids or phages. After the latter infects E. coli, antibody fragments are expressed on the surface of phage particles, or on the periplasm of E. coli, cytoplasm in the pulp. Then use the target antigen to screen the clones carrying specific antibody genes from the antibody library, so as to obtain the corresponding specific antibody technology. Various antibodies needed in basic research and clinical development have been screened from the antibody library, such as tumor-associated membrane protein antigens, autoantigens related to autoimmune diseases, and antibodies against viral antigens of viral diseases. These show the great application potential of antibody library technology in basic research and antibody drug development. In particular, obtaining fully human monoclonal antibodies from human antibody libraries overcomes the difficulty of obtaining human monoclonal antibodies using mouse hybridoma technology; The immunogenicity of the antibody is much lower than that of animal-derived antibodies, so it is safer.
非免疫的人天然抗体库以健康人为抗体基因来源,这些人称之为供体。由于使用全天然人抗体序列,获得的抗体对人体免疫系统具有极低的免疫原性。采用分子生物学和DNA操作技术,用RNA抽提试剂盒(例如QIAGEN的RNeasy Mini Kit,目录号74104),把总RNA从供体的外周血单核细胞(PBMC)中提取出来以后,从每一份RNA样品中取等量后合并,用反转录试剂盒(例如ThermoFisher Scientific的cDNA合成试剂盒(SuperScript TM IV Reverse Transcriptase)进行轻重链基因cDNA的合成。以这些抗体cDNA为模板,在第一轮扩增中,在以各个亚组特异性的上游引物和恒定区引物配合下进行PCR扩增,获得各个亚组的全部成员基因。在第二轮PCR中,带有搭桥的重链可变区(VH)3’-端引物组和带有搭桥的轻链可变区(VL)5’-端引物组分别与各自的另一端引物(包含有特异性的限制性内切酶位点)配合,使得获得的VH和VL能够搭头链接,形成单链抗体(scFv)基因。利用这些单链抗体的基因在5’-端和3’-端的特异性酶切位点,将这些scFv基因克隆至溶源性的噬菌粒(phagemid,如M13 phagemid)载体中,构建抗体文库。该文库的大小达到了50亿个集落形成单位(cfu)。 The natural antibody repertoire of non-immune people uses healthy people as the source of antibody genes, and these people are called donors. Due to the use of all natural human antibody sequences, the antibodies obtained have very low immunogenicity to the human immune system. Using molecular biology and DNA manipulation techniques, use an RNA extraction kit (such as QIAGEN's RNeasy Mini Kit, catalog number 74104) to extract total RNA from the donor's peripheral blood mononuclear cells (PBMC). Take equal amounts from one RNA sample and combine them, and use a reverse transcription kit (such as ThermoFisher Scientific's cDNA synthesis kit (SuperScript TM IV Reverse Transcriptase) to synthesize the light and heavy chain gene cDNA. Using these antibody cDNAs as templates, in In one round of amplification, carry out PCR amplification under the cooperation of each subgroup-specific upstream primer and constant region primer, and obtain all member genes of each subgroup.In the second round of PCR, the heavy chain with the bridge can be The variable region (VH) 3'-end primer set and the light chain variable region (VL) 5'-end primer set with a bridge were respectively combined with the other end primer (containing a specific restriction endonuclease site ) coordination, so that the obtained VH and VL can take the head link to form a single-chain antibody (scFv) gene. Utilize the specific enzyme cleavage sites of these scFv genes at the 5'-end and 3'-end, these scFv The gene is cloned into a lysogenic phagemid (phagemid, such as M13 phagemid) vector to construct an antibody library. The size of the library reaches 5 billion colony-forming units (cfu).
生物淘选指的是用特异性靶标从抗体库中筛选获得特异性单克隆抗体的过程。为了获得人TROP2抗原特异性的人抗体,用液相筛选法进行淘选。液相淘选法的一般步骤是:首先把商品化的TROP2抗原(TROP2-Fc融合蛋白,Acrobiosystems,目录号TR2-H5253)经生物素修饰,让每个分子交联上3-5个生物素分子。将合适量的生物素标记的TROP2抗原结合到链亲和素偶联的磁珠上(例如Dynabeads TM M-280 Streptavidin,ThermoFisher Scientific,目录号11205D)。解冻一份人抗体库,其中包含100亿个表达有不同抗体的噬菌体颗粒。磁珠和抗体库都以4%的脱脂奶粉溶液(4%MPBS)封闭,以消除非特异性作用位点。由于磁珠上可能还有未被亲和素结合的链亲和素,同时由于TROP2抗原分子是由人Fc构成的融合蛋白,因此需要在解冻的抗体库中同时添加足量(50-100倍过量于所用的靶标蛋白的量)的链亲和素和人抗体Fc,以去除结合它们的抗体克隆。封闭好的抗体库溶液与磁珠一起(总体积<1ml)加到1.5ml的Eppendorf管中,在室温旋转混合孵育2小时,以便让TROP2和特异性的噬菌体抗体结合。孵育完成后把Eppendorf管置于磁力架上静置1分钟,分离磁珠和溶液。用移液枪尽量完全去除溶液部分,换上新的枪头(tip),加入1ml洗涤液PBST(磷酸缓冲液(PBS)溶液中加入终浓度为0.05%的Tween 20)至Eppendorf管中,远离磁力架,以移液枪轻轻悬浮磁珠,重新置于磁力架上分离磁珠和溶液。去除溶液,如此重复三次。然后把洗涤液改成PBS,洗涤磁珠3次。经过洗涤,非特异性和低亲和力的噬菌体抗体被大部分去除,特异性的噬菌体抗体就留在磁珠上。向磁珠中加入洗脱液(10mM Glycine,pH2.0),重悬磁珠,室温静置10分钟,以磁力架分离磁珠和溶液,吸取溶液至一个干净的Eppendorf管中,加入1/10 1M Tris溶液(pH8.0)以中和溶液,这就是洗脱液,其中包含了成千上万个,具有不同结合TROP2抗原亲和力的噬菌体抗体,如此就完成了第一轮淘选。 Biopanning refers to the process of screening an antibody library with a specific target to obtain a specific monoclonal antibody. In order to obtain human antibodies specific for human TROP2 antigen, panning was performed by liquid phase screening. The general steps of the liquid phase panning method are as follows: firstly, the commercialized TROP2 antigen (TROP2-Fc fusion protein, Acrobiosystems, cat. molecular. An appropriate amount of biotin-labeled TROP2 antigen was bound to streptavidin-coupled magnetic beads (eg, Dynabeads M-280 Streptavidin, ThermoFisher Scientific, Cat# 11205D). Thaw a human antibody library containing 10 billion phage particles expressing different antibodies. Both magnetic beads and antibody libraries were blocked with 4% non-fat dry milk solution (4% MPBS) to eliminate non-specific interaction sites. Since there may be streptavidin that has not been bound by avidin on the magnetic beads, and because the TROP2 antigen molecule is a fusion protein composed of human Fc, it is necessary to add a sufficient amount (50-100 times) to the thawed antibody library at the same time. streptavidin and human antibody Fc in excess of the amount of target protein used) to remove antibody clones that bind them. Add the blocked antibody library solution together with the magnetic beads (total volume <1ml) into a 1.5ml Eppendorf tube, and incubate for 2 hours at room temperature with rotation and mixing to allow TROP2 to bind to the specific phage antibody. After the incubation, place the Eppendorf tube on the magnetic stand for 1 minute to separate the magnetic beads and the solution. Use a pipette gun to completely remove the solution part as much as possible, replace with a new tip (tip), add 1ml of washing solution PBST (add Tween 20 with a final concentration of 0.05% to the phosphate buffer solution (PBS) solution) to the Eppendorf tube, keep away from the Use a pipette to gently suspend the magnetic beads on the magnetic stand, and place them back on the magnetic stand to separate the magnetic beads and the solution. The solution was removed and this was repeated three times. Then change the washing solution to PBS and wash the magnetic beads 3 times. After washing, non-specific and low-affinity phage antibodies are mostly removed, and specific phage antibodies remain on the magnetic beads. Add eluent (10mM Glycine, pH2.0) to the magnetic beads, resuspend the magnetic beads, let stand at room temperature for 10 minutes, separate the magnetic beads and the solution with a magnetic stand, draw the solution into a clean Eppendorf tube, add 1/ 10 1M Tris solution (pH8.0) to neutralize the solution, which is the eluate, which contains thousands of phage antibodies with different binding affinity to the TROP2 antigen, thus completing the first round of panning.
为了进一步收获亲和力比较高的特异性抗体克隆,需要进行更多轮淘选。为此,以第一轮淘选洗脱的噬菌体抗体溶液感染对数期的、能被M13噬菌体侵染的大肠杆菌(如TG1菌株),得到感染液。取少量感染液进行一系列10倍梯度稀释(通常 稀释至原液的百万分之一,并取最后三个梯度进行涂布)以测定第一轮产出洗脱液(output)的滴度(titer),该titer又称为第一轮最大多样性,通常第一轮淘选后的产出滴度在10E6个cfu以下。把其余感染液全部涂布于含有相应抗生素的细菌培养板上过夜培养,以获取菌落;刮下菌落层并以液体培养基重悬,取足量包含第一轮output多样性的重悬液至含足量液体培养基(2YT-CG,2YT培养基中加入Carbenicillin和葡萄糖,终浓度分别是100μg/ml和2%)的摇瓶中,使重悬液稀释至0.1OD600以下并开始培养,直到对数期,即OD 600达到0.5左右。为使第一轮淘选获取的这些抗体再次呈现于噬菌体颗粒表面,取10ml菌液,加入辅助噬菌体M13K07,使感染复数为20:1,静置于37℃,保持30分钟(这个阶段称之为噬菌体拯救)。离心,以50ml表达培养基(2YT-AK,2YT培基中加入Carbenicillin和Kanamycin,终浓度分别是100μg/ml和30μg/ml)重悬菌体,置于30℃,200转/分,培养过夜。次日离心收获培养上清,加入1/5体积的PEG8000/NaCl(PEG-8000 20%,NaCl 2.5M),充分混匀,置于冰上孵育1小时。高速离心(11500×g)30分钟以收获噬菌体抗体颗粒。以1ml PBS溶液重悬沉淀,再次置于高速离心以去除细菌碎片。上清液即为第一轮淘选后的扩增液,其中包含的每个抗体克隆都被扩增了上万倍以上。这个扩增液即可用于第二轮的淘选实验。第二轮淘选的操作除了在PBST/PBS时,增加至各做6次(6/6)之外,其余和第一轮操作方法完全相同。在第三轮中,可以进一步增加洗涤次数至10/10。多轮淘选通常会有效地富集特异性的克隆,虽然多样明显减少,但它们的亲和力都比较高,便于后续的单克隆筛选。 In order to further harvest specific antibody clones with relatively high affinity, more rounds of panning are required. To this end, the phage antibody solution eluted from the first round of panning was used to infect Escherichia coli (such as TG1 strain) in the logarithmic phase that can be infected by M13 phage to obtain an infection solution. Take a small amount of infection solution and perform a series of 10-fold serial dilutions (usually diluted to one millionth of the stock solution, and take the last three gradients for coating) to determine the titer of the first round of output eluate (output) ( titer), the titer is also called the first round of maximum diversity, usually the output titer after the first round of panning is below 10E6 cfu. Spread all the remaining infection solution on the bacterial culture plate containing the corresponding antibiotics and culture overnight to obtain colonies; scrape off the colony layer and resuspend in liquid medium, take enough resuspension containing the diversity of the first round of output to In a shaking flask containing sufficient liquid medium (2YT-CG, 2YT medium is added Carbenicillin and glucose, the final concentration is 100 μg/ml and 2% respectively), dilute the resuspension to below 0.1OD600 and start culturing until Logarithmic phase, that is, OD 600 reaches about 0.5. In order to make these antibodies obtained in the first round of panning reappear on the surface of phage particles, take 10ml of bacterial liquid, add helper phage M13K07 to make the multiplicity of infection 20:1, and keep it at 37°C for 30 minutes (this stage is called for phage rescue). Centrifuge, resuspend the cells with 50ml expression medium (2YT-AK, add Carbenicillin and Kanamycin to 2YT medium, the final concentrations are 100μg/ml and 30μg/ml respectively), place at 30°C, 200 rpm, and culture overnight . The next day, the culture supernatant was harvested by centrifugation, 1/5 volume of PEG8000/NaCl (PEG-8000 20%, NaCl 2.5M) was added, mixed well, and incubated on ice for 1 hour. High-speed centrifugation (11500×g) for 30 minutes to harvest phage antibody particles. Resuspend the pellet with 1ml PBS solution and centrifuge again at high speed to remove bacterial debris. The supernatant is the amplification solution after the first round of panning, and each antibody clone contained in it has been amplified more than ten thousand times. This amplification solution can be used for the second round of panning experiments. The operation of the second round of panning is exactly the same as that of the first round except that it is increased to 6 times (6/6) in PBST/PBS. In the third round, the number of washes can be further increased to 10/10. Multiple rounds of panning usually effectively enrich specific clones. Although the diversity is significantly reduced, their affinity is relatively high, which is convenient for subsequent monoclonal screening.
为了获取特异性的单克隆抗体,需要进行单克隆噬菌体酶联免疫实验(Monophage ELISA)。为此,把在第二轮和/或第三轮的梯度稀释中分离良好的单菌落,单独地接种至含2YT-AG的96-孔培养板中(每板接种93个菌落,留下三个孔作为阴性对照),过夜培养,这就是母板(master plate)。将母板中每孔的菌液接种至新的培养板中生长至对数期,进行上述的噬菌体拯救,使每个克隆的抗体表达于噬菌体表面。在普通的96-孔酶联板上包被TROP2抗原(1μg/ml)。每个单独表达的单克隆噬菌体抗体菌液分别加入到TROP2板,后接合适的二抗(鼠抗M13单抗)及辣根过氧化物酶(HRP)偶联的三抗(兔抗鼠多抗),加HRP底物显色,读取吸光值(450nM)。TROP2阳性克隆的判断方法是:高于阴性对照孔信号3倍以上。经过分析,多个孔对应的克隆显示对TROP2抗原阳性,这些克隆统称为hit。In order to obtain specific monoclonal antibodies, a monoclonal phage enzyme-linked immunosorbent assay (Monophage ELISA) is required. For this purpose, single colonies separated well in the second and/or third round of serial dilution were individually inoculated into 96-well culture plates containing 2YT-AG (93 colonies per plate, leaving three wells as a negative control), cultured overnight, this is the master plate. Inoculate the bacterial solution in each well of the master plate into a new culture plate and grow to the logarithmic phase, perform the above-mentioned phage rescue, and express the antibody of each clone on the surface of the phage. Coat TROP2 antigen (1 μg/ml) on common 96-well enzyme-linked plate. Each individually expressed monoclonal phage antibody bacterial solution was added to the TROP2 plate, followed by an appropriate secondary antibody (mouse anti-M13 monoclonal antibody) and horseradish peroxidase (HRP)-coupled tertiary antibody (rabbit anti-mouse polyclonal antibody) Antibody), add HRP substrate for color development, and read the absorbance value (450nM). The method for judging TROP2 positive clones is: the signal is more than 3 times higher than that of negative control wells. After analysis, clones corresponding to multiple wells were positive for the TROP2 antigen, and these clones were collectively referred to as hits.
从母板对应孔上将这些hit菌液分别接种至3ml 2YT-CG,置于37℃,200转/分,培养过夜。次日抽提噬菌粒DNA,以特异性引物测定包含每个hit的单链抗体区的序列。取编码区DNA序列翻译成氨基酸序列,对它们进行多重序列比较(CLUSTALW,网站链接https://www.genome.jp/tools-bin/clustalw)以判断克隆特异性。经过分析,这些hit在序列上属于两个不同的克隆,其中一个命名为1F7,由此获得了抗人TROP2抗原的全人抗体可变区序列。1F7的重链可变区的CDR1、CDR2和CDR3的氨基酸序列分别如SEQ ID NO.1-3所示,轻链可变区的CDR1、CDR2和CDR3的氨基酸序列分别如SEQ ID NO.4-6所示,重链可变区的氨基酸序列如SEQ ID NO.16所示,轻链可变区的氨基酸序列如SEQ ID NO.17所示。由1F7的轻链和重链可变区构成的单链抗体氨基酸序列如SEQ ID NO.26所示。Inoculate these hit bacteria liquids into 3ml 2YT-CG from the corresponding wells of the motherboard, place at 37°C, 200 rpm, and culture overnight. The next day, the phagemid DNA was extracted, and the sequence of the single-chain antibody region containing each hit was determined with specific primers. The DNA sequences of the coding regions were translated into amino acid sequences, and multiple sequence comparisons (CLUSTALW, website link https://www.genome.jp/tools-bin/clustalw) were performed on them to determine the clone specificity. After analysis, these hits belonged to two different clones in sequence, one of which was named 1F7, thus obtaining the variable region sequence of the fully human antibody against human TROP2 antigen. The amino acid sequences of CDR1, CDR2 and CDR3 of the heavy chain variable region of 1F7 are shown in SEQ ID NO.1-3 respectively, and the amino acid sequences of CDR1, CDR2 and CDR3 of the light chain variable region are shown in SEQ ID NO.4- 6, the amino acid sequence of the heavy chain variable region is shown in SEQ ID NO.16, and the amino acid sequence of the light chain variable region is shown in SEQ ID NO.17. The amino acid sequence of the single-chain antibody composed of the light chain and heavy chain variable regions of 1F7 is shown in SEQ ID NO.26.
实施例2 抗体结合及功能验证Example 2 Antibody binding and functional verification
为了验证获得的TROP2抗体克隆是否结合纯化的TROP2抗原以及细胞膜表面表达的TROP2,1F7单链抗体的基因被克隆至真核表达载体pFH(益科思特公司制备),得到质粒pFH-1F7。在该载体中,scFv基因和人IgG4的Fc基因融合,表达出scFv-Fc形式的蛋白,它可以用Potein-A进行亲和纯化,也可以用(HRP或荧光素)标记抗人Fc抗体进行检测。In order to verify whether the obtained TROP2 antibody clone binds to the purified TROP2 antigen and TROP2 expressed on the cell membrane surface, the gene of the 1F7 single-chain antibody was cloned into the eukaryotic expression vector pFH (manufactured by Ekest) to obtain the plasmid pFH-1F7. In this vector, the scFv gene is fused with the Fc gene of human IgG4 to express the protein in the form of scFv-Fc, which can be affinity purified with Potein-A or labeled with (HRP or fluorescein) anti-human Fc antibody detection.
获得了1F7的scFv-Fc蛋白后,以流式细胞仪检测了1F7对表达TROP2的CHO细胞系(益科思特公司制备)的结合,证实了1F7特异性结合细胞膜表面的TROP2抗原(见图2)。图中角百分数(阳性百分数)代表了抗体对细胞表面抗原的结合强弱。克隆1F7的阳性百分数为89.33%,由此验证了该抗体与人细胞表面抗原TROP2的结合能力。After obtaining the scFv-Fc protein of 1F7, the binding of 1F7 to the TROP2-expressing CHO cell line (manufactured by EKSTER) was detected by flow cytometry, and it was confirmed that 1F7 specifically binds to the TROP2 antigen on the surface of the cell membrane (see Fig. 2). The angle percentage (positive percentage) in the figure represents the binding strength of the antibody to the cell surface antigen. The positive percentage of clone 1F7 was 89.33%, thus verifying the ability of the antibody to bind to the human cell surface antigen TROP2.
实施例3 抗体亲和力成熟Example 3 Antibody affinity maturation
体外亲和力成熟是一种快速的定向分子进化操作:在DNA水平上引入突变,在蛋白结合的水平上进行筛选。对于1F7抗体而言,为了避免引入可能增强免疫原性的突变或者明显改变抗体的结构,突变位点局限于CDR区的序列,而且每个位置都分别进行饱和突变,每一种突变分别表达,分别检测。In vitro affinity maturation is a rapid directed molecular evolution operation: mutations are introduced at the DNA level and screened at the protein binding level. For the 1F7 antibody, in order to avoid introducing mutations that may enhance immunogenicity or significantly change the structure of the antibody, the mutation sites are limited to the sequence of the CDR region, and each position is subjected to saturation mutations, and each mutation is expressed separately. Tested separately.
亲和力成熟的操作过程是:首先把由1F7的轻重链可变区基因分别克隆至pUFL载体上(pUFL是一种可以在大肠杆菌中表达抗体Fab的质粒,由益科思特公司制备),得到1F7的Fab形式。设计全套CDR区单点随机突变引物,以点突变试剂盒(QuikChange Lightning Multi Site-Directed Mutagenesis Kit,Agilent目录号210515)分别对每个CDR位置进行PCR突变,分别转化BL21(DE3)感受态细菌,分别制备单克隆菌落平板,这些突变体统称为单点突变文库。同时把亲本1F7的Fab载体也进行转化。挑取>30个菌落制备DNA对突变区进行序列分析以评估突变效率。当突变效率合适时(大于80%)按每个CDR位置的突变挑取92个菌落至含有相应培基(2YT中含100μg/ml Carbenicillin+0.1%葡萄糖)的96-孔培养板中,另外挑取3个亲本菌落,留下三个孔为空白对照。平板置于37℃中,300转/分培养6小时,加入IPTG至终浓度1mM,转入30℃中,300转/分,培养过夜,Fab片段表达并分泌至培养基中。The operation process of affinity maturation is as follows: firstly, the light and heavy chain variable region genes of 1F7 are respectively cloned into the pUFL vector (pUFL is a plasmid capable of expressing antibody Fab in Escherichia coli, prepared by Ecosite), and the Fab form of 1F7. Design a full set of single-point random mutation primers in the CDR region, and perform PCR mutations on each CDR position with the point mutation kit (QuikChange Lightning Multi Site-Directed Mutagenesis Kit, Agilent catalog number 210515), respectively, and transform BL21 (DE3) competent bacteria, Plates of monoclonal colonies are prepared separately and these mutants are collectively referred to as single point mutation libraries. At the same time, the Fab vector of the parental 1F7 was also transformed. Pick >30 colonies to prepare DNA for sequence analysis of the mutation region to evaluate the mutation efficiency. When the mutation efficiency is appropriate (greater than 80%), pick 92 colonies according to the mutation of each CDR position to a 96-well culture plate containing the corresponding culture medium (containing 100 μg/ml Carbenicillin+0.1% glucose in 2YT), and pick in addition Take 3 parental colonies and leave 3 wells as blank controls. The plate was placed at 37°C, cultured at 300 rpm for 6 hours, added IPTG to a final concentration of 1mM, transferred to 30°C, 300 rpm, cultured overnight, and Fab fragments were expressed and secreted into the medium.
通过预实验,优化酶联反应条件,使得1F7亲本抗体Fab对抗原TROP2的结合A450吸收值略高于本底信号的3倍左右。提前一天在酶联板上按0.25μg/ml包被TROP2抗原,次日按孔加入分泌表达的突变Fab,以HRP偶联的抗人Fab作为二抗,底物显色,读取A450,获得信号高于亲本孔最高值1.5倍的孔对应的克隆,这些克隆称之为hit。收集轻可变区所有的hit,重新进行诱导表达以及酶联实验以验证它们确实具有高于亲本抗体的亲和力。对重复阳性的克隆的质粒进行突变区序列分析,获取CDR氨基酸的突变信息,这个过程称之为初级筛选(primary screening)。由此获取了CDR区所有有益于亲和力提高的突变信息:重链可变区CDR中对亲和力有提供的突变位点见表1,轻链可变区CDR中对亲和力有提供的突变位点见表2。Through preliminary experiments, the conditions of the enzyme-linked reaction were optimized so that the A450 absorption value of the 1F7 parental antibody Fab to the antigen TROP2 was slightly higher than the background signal by about 3 times. Coat TROP2 antigen at 0.25 μg/ml on the enzyme-linked plate one day in advance, add the secreted and expressed mutant Fab to the wells the next day, use HRP-coupled anti-human Fab as the secondary antibody, develop color with the substrate, and read A450 to obtain Clones corresponding to wells whose signals were 1.5 times higher than the highest value of parental wells were called hits. Collect all the hits in the light variable region, re-induce expression and enzyme-linked experiments to verify that they do have higher affinity than the parental antibody. Sequence analysis of the mutant region of the plasmid of the repeat-positive clone is performed to obtain the mutation information of the CDR amino acid. This process is called primary screening. In this way, all the mutation information in the CDR region that is beneficial to the improvement of affinity is obtained: the mutation sites that provide affinity in the heavy chain variable region CDR are shown in Table 1, and the mutation sites that provide affinity in the light chain variable region CDR are shown in Table 1. Table 2.
表1 1F7重链可变区CDR中对亲和力提高有益的突变Table 1 The beneficial mutations in the CDR of the heavy chain variable region of 1F7 for improving the affinity
CDR区位置CDR region location 亲本氨基酸parent amino acid 有益的突变氨基酸Beneficial mutant amino acids
H31H31 SS NN
H53H53 NN R,K,GR, K, G
H99H99 GG H,AH,A
H100H100 DD. EE.
表2 1F7轻链可变区CDR中对亲和力提高有益的突变Table 2 The beneficial mutations in the CDR of the light chain variable region of 1F7 for improving the affinity
CDR区位置CDR region location 亲本氨基酸parent amino acid 有益的突变氨基酸Beneficial mutant amino acids
L28L28 GG N,EN,E
L30L30 SS R,KR,K
L50L50 AA RR
L52L52 SS G,H,RG,H,R
L53L53 SS KK
从初级文库中通过酶联实验筛选获得了整个CDR区有益于亲和力提高的所有单个突变信息后,重新设计新的多点突变引物,使其包含主要的有益突变,再次以点突变试剂盒构建突变文库,这个文库称为组合文库。为了尽可能筛选轻重链可变区中所有的突变组合,分别构建及筛选包含各自多个突变的轻、重链可变区的组合文库。以亲本重链可变区的轻链变区组合文库中,筛选到亲和力最高的前10个克隆,它们的轻链可变区氨基酸序列包含5种突变序列,序列如SEQ ID NO.21-25所示,其轻链可变区的CDR1具有SEQ ID NO.4、11、12任一所示的氨基酸序列,CDR2具有SEQ ID NO.2、13、14任一所示的氨基酸序列,CDR3具有SEQ ID NO.3、15任一所示的氨基酸序列。After obtaining all the single mutation information in the entire CDR region that is beneficial to the improvement of affinity from the primary library through enzyme-linked assay screening, redesign new multi-point mutation primers to include the main beneficial mutations, and construct mutations again with the point mutation kit library, this library is called a combinatorial library. In order to screen all the combinations of mutations in the variable regions of the light and heavy chains as much as possible, combinatorial libraries containing multiple mutations in the variable regions of the light and heavy chains were respectively constructed and screened. From the light chain variable region combinatorial library of parental heavy chain variable region, the top 10 clones with the highest affinity were screened, and their light chain variable region amino acid sequences contained 5 kinds of mutant sequences, such as SEQ ID NO.21-25 As shown, CDR1 of its light chain variable region has the amino acid sequence shown in any one of SEQ ID NO.4, 11, 12, CDR2 has the amino acid sequence shown in any one of SEQ ID NO.2, 13, 14, and CDR3 has the amino acid sequence shown in any one of SEQ ID NO.2, 13, 14 The amino acid sequence shown in any one of SEQ ID NO.3, 15.
以亲本轻链可变区的重链变区组合文库中,筛选获得了亲和力最高的10个克隆的氨基酸序列,它们的重链可变区的氨基酸序列包含了3种突变序列,分别如SEQ ID NO.18-20所示,其重链可变区的CDR1具有SEQ ID NO.1、7任一所示的氨基酸序列,CDR2具有SEQ ID NO.2、8、9任一所示的氨基酸序列,CDR3具有SEQ ID NO.3、10任一所示的氨基酸序列。From the heavy chain variable region combinatorial library of the parental light chain variable region, the amino acid sequences of the 10 clones with the highest affinity were screened, and the amino acid sequences of their heavy chain variable region contained three mutant sequences, as shown in SEQ ID As shown in NO.18-20, the CDR1 of the heavy chain variable region has the amino acid sequence shown in any one of SEQ ID NO.1 and 7, and the CDR2 has the amino acid sequence shown in any one of SEQ ID NO.2, 8, or 9 , CDR3 has the amino acid sequence shown in any one of SEQ ID NO.3,10.
同时,混合上述筛选所获得的阳性全部重链可变区混合克隆及全部阳性轻链可变区克隆,分别制备它们的DNA混合质粒,以酶切、链接的重组方式组装成最终的Fab抗体组合文库。对这个文库进行筛选,挑取信号最高的前10位,分析其DNA序列,得到3株不同的Fab克隆,它们具有相同的重链可变区,其氨基酸序列如SEQ ID NO.19所示;它们的轻链可变区氨基酸序列如SEQ ID NO.21-24所示。At the same time, mix the positive all heavy chain variable region mixed clones and all positive light chain variable region clones obtained from the above screening, prepare their DNA mixed plasmids respectively, and assemble them into the final Fab antibody combination by enzyme digestion and linking recombination library. This library was screened, the top 10 positions with the highest signal were picked, and their DNA sequences were analyzed to obtain 3 different Fab clones, which had the same heavy chain variable region, and their amino acid sequences were shown in SEQ ID NO.19; Their light chain variable region amino acid sequences are shown in SEQ ID NO.21-24.
采用流式细胞仪(FACS)对以上筛选得到的TROP2抗体与不同细胞株的TROP2结合能力进行检测,结果表明,相对于亲本抗体1F7而言;亲和力提高的多株抗体(F7A,F7B,F7C)在流式细胞分析中表现出显著提高的表观亲和力。ELISA检测表明,亲本抗体1F7的内在亲和力约7.5nM,而突变体F7A的内在亲和力是4.35nM。Using flow cytometry (FACS) to detect the TROP2 binding ability of the above screened TROP2 antibody and different cell lines, the results show that, compared to the parental antibody 1F7; Shows significantly improved apparent affinity in flow cytometric analysis. ELISA detection showed that the intrinsic affinity of the parental antibody 1F7 was about 7.5nM, while that of the mutant F7A was 4.35nM.
为了检验获得的突变体的亲和力是否得到了提高,分别制备、表达并纯化IgG形式的其中的一个突变体F7A以及1F7亲本抗体。1F7的重链可变区的CDR1的氨基酸序列如SEQ ID NO.1所示,CDR2的氨基酸序列如SEQ ID NO.2所示,CDR3的氨基酸序列如SEQ ID NO.3所示;轻链可变区的CDR1的氨基酸序列如SEQ ID NO.4所示,CDR2的氨基酸序列如SEQ ID NO.5所示,CDR3的氨基酸序列如SEQ ID NO.6所示;重链可变区的氨基酸序列如SEQ ID NO.16所示,轻链可变区的氨基酸序列如SEQ ID NO.17所示;轻链全长序列如SEQ ID NO.30所示,重链全长序列如SEQ ID NO.29所示。其中F7A的重链可变区的CDR1的氨基酸序列如SEQ ID NO.7所示,CDR2的氨基酸序列如SEQ ID NO.8所示,CDR3的氨基酸序列如SEQ ID NO.3所示;轻链可变区的CDR1的氨基酸序列如SEQ ID NO.4所示,CDR2的氨基酸序列如SEQ ID NO.13所示,CDR3的氨基酸序列如SEQ ID NO.15所示,重链可变区的氨基酸序列如SEQ ID NO.19所示,轻链可 变区的氨基酸序列如SEQ ID NO.21所示;轻链全长序列如SEQ ID NO.28所示,重链全长序列如SEQ ID NO.27所示。表达、纯化的抗体产物经表面等离子共振技术(SPR)检测,它们与人及食蟹猴的TROP2蛋白的结合曲线如图3所示。亲和力分析数据如表3所示。结果表明,突变体F7A对人TROP2的结合相比于1F7均有1.74倍的提高;对猴TROP2的亲和力有3.18倍的提高。人、猴交叉倍数从5.38倍缩小到2.94倍(表3)。In order to test whether the affinity of the obtained mutants was improved, one of the mutant F7A and the 1F7 parental antibody in the form of IgG were prepared, expressed and purified, respectively. The amino acid sequence of CDR1 of the heavy chain variable region of 1F7 is shown in SEQ ID NO.1, the amino acid sequence of CDR2 is shown in SEQ ID NO.2, and the amino acid sequence of CDR3 is shown in SEQ ID NO.3; the light chain can be The amino acid sequence of CDR1 in the variable region is shown in SEQ ID NO.4, the amino acid sequence of CDR2 is shown in SEQ ID NO.5, and the amino acid sequence of CDR3 is shown in SEQ ID NO.6; the amino acid sequence of the heavy chain variable region As shown in SEQ ID NO.16, the amino acid sequence of the light chain variable region is shown in SEQ ID NO.17; the full-length sequence of the light chain is shown in SEQ ID NO.30, and the full-length sequence of the heavy chain is shown in SEQ ID NO. 29. Wherein the amino acid sequence of CDR1 of the heavy chain variable region of F7A is shown in SEQ ID NO.7, the amino acid sequence of CDR2 is shown in SEQ ID NO.8, and the amino acid sequence of CDR3 is shown in SEQ ID NO.3; The amino acid sequence of CDR1 in the variable region is shown in SEQ ID NO.4, the amino acid sequence of CDR2 is shown in SEQ ID NO.13, the amino acid sequence of CDR3 is shown in SEQ ID NO.15, and the amino acid sequence of the heavy chain variable region The sequence is shown in SEQ ID NO.19, the amino acid sequence of the light chain variable region is shown in SEQ ID NO.21; the full-length sequence of the light chain is shown in SEQ ID NO.28, and the full-length sequence of the heavy chain is shown in SEQ ID NO .27 shown. The expressed and purified antibody products were detected by surface plasmon resonance (SPR), and their binding curves to human and cynomolgus monkey TROP2 proteins are shown in FIG. 3 . The affinity analysis data are shown in Table 3. The results showed that the binding of mutant F7A to human TROP2 was 1.74 times higher than that of 1F7; the affinity to monkey TROP2 was 3.18 times higher. The cross ratio between human and monkey was reduced from 5.38 times to 2.94 times (Table 3).
表3 SPR分析1F7及F7A对人、猴TROP2的亲和力Table 3 SPR analysis of the affinity of 1F7 and F7A to human and monkey TROP2
抗体Antibody 抗原antigen ka(1/Ms)ka(1/Ms) kd(1/s)kd(1/s) 亲和力KD(M)Affinity KD(M)
1F71F7 Human TROP-2Human TROP-2 1.18E+051.18E+05 8.92E-048.92E-04 7.57E-097.57E-09
1F71F7 Rhesus TROP-2Rhesus TROP-2 2.31E+042.31E+04 9.42E-049.42E-04 4.07E-084.07E-08
F7AF7A Human TROP-2Human TROP-2 1.92E+051.92E+05 8.34E-048.34E-04 4.35E-094.35E-09
F7AF7A Rhesus TROP-2Rhesus TROP-2 1.28E+051.28E+05 1.65E-031.65E-03 1.28E-081.28E-08
实施例4 TROP2×CD3双特异性抗体设计Example 4 Design of TROP2×CD3 bispecific antibody
本实施例以肿瘤细胞表面抗原TROP2和免疫细胞表面抗原CD3作为靶点,设计双特异性抗体。In this example, a bispecific antibody was designed using the tumor cell surface antigen TROP2 and the immune cell surface antigen CD3 as targets.
结合蛋白质结构设计软件和大量的人工实验筛选,本发明在多种结合TROP2和CD3的双特异性抗体结构中筛选确定了包括单链抗体单元和单克隆抗体单元的具有对称结构的双特异性抗体结构。本发明将这种技术平台称之为FIST(fusion of IgG and scFv technology)。例如,抗TROP2单克隆抗体单元可以作为IgG抗体,包括2个完整的轻链-重链对(即含有完整的Fab和Fc结构域,重链和轻链之间通过二硫键连接),抗CD3可以作为单链抗体单元,包括2个单链抗体(ScFv)。单链抗体和单克隆抗体之间采用连接肽连接,对于单链抗体和单克隆抗体的连接方式,可以设计下述连接方式,由此获得对称结构的双特异性抗体,其结构示意图如图4所示。Combining protein structure design software and a large number of manual experimental screening, the present invention screened and determined bispecific antibodies with symmetrical structures including single-chain antibody units and monoclonal antibody units in a variety of bispecific antibody structures that bind TROP2 and CD3 structure. The present invention refers to this technical platform as FIST (fusion of IgG and scFv technology). For example, the anti-TROP2 monoclonal antibody unit can be used as an IgG antibody, including two complete light chain-heavy chain pairs (that is, containing complete Fab and Fc domains, and the heavy chain and light chain are connected by disulfide bonds), anti-TROP2 CD3 can be used as a single chain antibody unit, including 2 single chain antibodies (ScFv). The single-chain antibody and the monoclonal antibody are connected by a connecting peptide. For the connection method of the single-chain antibody and the monoclonal antibody, the following connection method can be designed to obtain a bispecific antibody with a symmetrical structure. The schematic diagram of its structure is shown in Figure 4 shown.
将单链抗体的C端与单克隆抗体的重链可变区(VH)N端通过连接,得到nFIST(图4的A)。单链抗体也可与IgG-Fc的C端通过连接肽融合,得到cFIST(图4的B)。抗CD3单链抗体UCHT1的可变区序列来自文献(Beverley,P.C.&Callard,R.E.Distinctive functional characteristics of human"T"lymphocytes defined by E rosetting or a monoclonal anti-T cell antibody(1981)Eur.J.Immunol.11,329-334)并经人源化改造(Shalaby et.al.,Development of humanized bispecific antibodies reactive with cytotoxic lymphocytes and tumor cells overexpressing the HER2 protooncogene.(1992)J Exp Med.Jan 1;175(1):217-25)。由此构建的单链抗体命名为K3(SEQ ID NO.33),包含了分别安插在重链可变区和轻链可变区里面的两个半胱氨酸(Cys),在折叠之后形成一对链间二硫键,其重链可变区的氨基酸序列如SEQ ID NO.31所示,轻链可变区的氨基酸序列如SEQ ID NO.32所示。。利用表面等离子共振技术,对单链抗体形式K3与人CD3的结合力进行了检测,结果如图5所示。nFIST was obtained by linking the C-terminal of the single-chain antibody to the N-terminal of the heavy chain variable region (VH) of the monoclonal antibody (Figure 4A). The single-chain antibody can also be fused to the C-terminus of IgG-Fc via a linker peptide to obtain cFIST (Figure 4B). The variable region sequence of the anti-CD3 single-chain antibody UCHT1 was obtained from the literature (Beverley, P.C. & Callard, R.E. Distinctive functional characteristics of human "T" lymphocytes defined by E rosetting or a monoclonal anti-T cell antibody (1981) Eur.J.Immunol. 11,329-334) and transformed by humanization (Shalaby et.al., Development of humanized bispecific antibodies reactive with cytotoxic lymphocytes and tumor cells overexpressing the HER2 protooncogene. (1992) J Exp Med. Jan 1; 175 (1): 217 -25). The single-chain antibody thus constructed is named K3 (SEQ ID NO.33), which contains two cysteines (Cys) inserted in the variable region of the heavy chain and the variable region of the light chain respectively, which are formed after folding A pair of interchain disulfide bonds, the amino acid sequence of the heavy chain variable region is shown in SEQ ID NO.31, and the amino acid sequence of the light chain variable region is shown in SEQ ID NO.32. . Using the surface plasmon resonance technique, the binding force of the single-chain antibody form K3 to human CD3 was detected, and the results are shown in FIG. 5 .
实施例5 TROP2×CD3双特异性抗体的制备Example 5 Preparation of TROP2×CD3 bispecific antibody
根据实施例4中设计中cFIST形式的双特异性抗体编码基因并克隆至表达载体pG4HK,得到的2个双特异性抗体F7AK3和1F7K3,它们的重链氨基酸序列分别如SEQ ID NO.35、36所示;轻链氨基酸序列分别如SEQ ID NO.28、30所示。将1F7K3和F7AK3各自对应的表达质粒分别稳 定转染CHO-K1,表达制备双抗蛋白。According to the bispecific antibody coding gene designed in the form of cFIST in Example 4 and cloned into the expression vector pG4HK, two bispecific antibodies F7AK3 and 1F7K3 were obtained, and their heavy chain amino acid sequences were shown in SEQ ID NO.35, 36, respectively. Shown; Light chain amino acid sequence shown in SEQ ID NO.28,30 respectively. The expression plasmids corresponding to 1F7K3 and F7AK3 were stably transfected into CHO-K1 respectively, and the double antibody protein was expressed.
为获得高纯度的双特异性抗体,按照以下步骤进行纯化。(1)料液预处理:发酵培养的上清液通过2000rpm离心,10min,然后用0.22μM滤膜过滤处理。(2)亲和层析:用Mabselect SuRe亲和层析柱(购自GE公司,货号18-5438-02)捕获经过预处理的发酵液中的抗体,用平衡缓冲液(10mM PB,0.1M NaCl,pH7.0)充分平衡层析柱后,过亲和层析柱,用洗脱缓冲液(0.1M柠檬酸酸,pH 3.0)洗脱。(3)阳离子交换层析:经亲和层析制备的样品,进一步通过分子筛交换层析纯化,缓冲液(50mM PBS,0.2Man Na 2SO 4,pH 6.7)。 In order to obtain high-purity bispecific antibodies, follow the steps below for purification. (1) Feed liquid pretreatment: the supernatant of the fermentation culture was centrifuged at 2000 rpm for 10 min, and then filtered through a 0.22 μM filter membrane. (2) Affinity chromatography: Use Mabselect SuRe affinity chromatography column (purchased from GE Company, Cat. No. 18-5438-02) to capture the antibody in the pretreated fermentation broth, and equilibrate buffer (10mM PB, 0.1M NaCl, pH 7.0) to fully equilibrate the chromatography column, pass through the affinity chromatography column, and elute with elution buffer (0.1M citric acid, pH 3.0). (3) Cation exchange chromatography: The sample prepared by affinity chromatography was further purified by molecular sieve exchange chromatography, buffer (50 mM PBS, 0.2 Man Na 2 SO 4 , pH 6.7).
将1F7K3和F7AK3进行SDS-PAGE和HPLC-SEC检测,SDS-PAGE的结果如图6所示,HPLC-SEC检测结果如图7所示。检测结果表明,经表达和纯化成功制备得到了双特异性抗体1F7K3和F7AK3,经纯化后的双特异性抗体的单体纯度在95%以上。1F7K3 and F7AK3 were detected by SDS-PAGE and HPLC-SEC. The results of SDS-PAGE are shown in FIG. 6 , and the results of HPLC-SEC detection are shown in FIG. 7 . The test results showed that the bispecific antibodies 1F7K3 and F7AK3 were successfully prepared through expression and purification, and the monomer purity of the purified bispecific antibodies was above 95%.
实施例6 流式分析法检测双特异性抗体F7AK3与TROP2细胞及T细胞的结合活性Example 6 Detection of binding activity of bispecific antibody F7AK3 to TROP2 cells and T cells by flow cytometry
为验证F7AK3对TROP2细胞系及T细胞的结合,以cFIST形式,构建F7A与单链抗体K3的双特异性抗体。In order to verify the binding of F7AK3 to TROP2 cell line and T cells, a bispecific antibody of F7A and single-chain antibody K3 was constructed in the form of cFIST.
取乳腺癌细胞系MCF、MDA-MB-231、MDA-MB-468、HCC1395、CD3 +T细胞,按1×10 6细胞/反应管重悬于PBS中,以1ml结合缓冲液(含有0.5%w/v BSA+2mM EDTA的PBS)漂洗细胞一次,离心(350×g,4℃,5min),后用200μl结合缓冲液重悬细胞。加入双特异抗体和F7AK3至5μg/ml,冰上孵育45min。如上漂洗细胞一次后用100μl结合缓冲液重悬细胞。样品管加入5μl荧光标记二抗抗体(PE anti-human IgG Fc Antibody,Biolegend,409304)。如上漂洗细胞一次。用200μl PBS重悬细胞后,上机(Beckman)检测。对各细胞系的流式分析图如图8的A。结合梯度分析见图8的B-E,其中,对人T细胞的CD3的结合见图8的F。EC50分析数据如表4和图8的G所示。结果表明,F7AK3能够浓度依赖性的结合不同TROP2表达水平的TNBC细胞系,同时也能有效地结合人T细胞的CD3,其EC50相差2倍~10倍(表4)。同时,如图9所示,F7AK3能交联T细胞和TNBC癌细胞(如MDA-MB-468),形成胞簇体(synapse)。 Take breast cancer cell lines MCF, MDA-MB-231, MDA-MB-468, HCC1395, CD3 + T cells, resuspend in PBS at 1×10 6 cells/reaction tube, add 1ml binding buffer (containing 0.5% w/v BSA+2mM EDTA in PBS), rinse the cells once, centrifuge (350×g, 4° C., 5 min), and then resuspend the cells with 200 μl binding buffer. Add bispecific antibody and F7AK3 to 5 μg/ml, and incubate on ice for 45 minutes. Cells were washed once as above and resuspended in 100 μl of binding buffer. 5 μl of fluorescently labeled secondary antibody (PE anti-human IgG Fc Antibody, Biolegend, 409304) was added to the sample tube. Cells were rinsed once as above. After the cells were resuspended in 200 μl of PBS, they were tested on a machine (Beckman). The flow cytometric analysis charts for each cell line are shown in Figure 8A. The binding gradient analysis is shown in BE of FIG. 8 , and the binding to CD3 of human T cells is shown in FIG. 8F . The EC50 analysis data are shown in Table 4 and G of Figure 8 . The results showed that F7AK3 can bind to TNBC cell lines with different TROP2 expression levels in a concentration-dependent manner, and can also effectively bind to CD3 of human T cells, with a difference of 2-10 times in EC50 (Table 4). At the same time, as shown in Figure 9, F7AK3 can cross-link T cells and TNBC cancer cells (such as MDA-MB-468) to form cell clusters (synapse).
表4流式细胞术检测F7AK3对TROP2 +细胞系及CD3 +T细胞的结合 Table 4 The binding of F7AK3 to TROP2 + cell lines and CD3 + T cells detected by flow cytometry
 the MCFMCF MDA-MB-231MDA-MB-231 MDA-MB-468MDA-MB-468 HCC1395HCC1395 CD3 +T细胞 CD3 + T cells
EC50(ng/ml)EC50(ng/ml) 204.8204.8 89.0689.06 66.7766.77 53.2453.24 568.3568.3
实施例7 双特异性抗体介导的体外细胞杀伤效率检测Example 7 Detection of in vitro cell killing efficiency mediated by bispecific antibodies
本实施例分别以MCF、MDA-MB-231、MDA-MB-468、HCC1395及鼠源细胞4T1为靶细胞,以PBMC为免疫效应细胞,检测双特异性抗体F7AK3介导的靶细胞的杀伤作用。具体实验步骤如下:In this example, MCF, MDA-MB-231, MDA-MB-468, HCC1395, and murine cell 4T1 were used as target cells, and PBMC were used as immune effector cells to detect the killing effect of the target cells mediated by the bispecific antibody F7AK3 . The specific experimental steps are as follows:
1)靶细胞准备:培养靶细胞,吹匀后计数,1000rpm,离心5min,PBS洗涤一次。靶细胞离心洗涤后用GT-T551培养基调整密度为0.2×10 6/ml,每孔加入50μl,则每孔中细胞为10000个。 1) Target cell preparation: culture target cells, blow evenly, count, centrifuge at 1000 rpm for 5 min, and wash once with PBS. After the target cells were centrifuged and washed, the density was adjusted to 0.2×10 6 /ml with GT-T551 medium, and 50 μl was added to each well, so the number of cells in each well was 10,000.
2)PBMC准备:以PBMC为效应细胞。将冻存在液氮罐中的PBMC取出(参考细胞冻存与复苏)解冻,加入含有PBS或GT-T551培养基的15ml离心管中,1000rpm,离心5min,用PBS或GT-T551培养基洗涤两次,计细胞数、活度与密度,并调整活细胞密度为2×10 6/ml,每孔加入50μl,则每孔中细胞为100000个。 2) PBMC preparation: use PBMC as effector cells. Take out the PBMC frozen in the liquid nitrogen tank (refer to cell freezing and recovery), thaw, add to a 15ml centrifuge tube containing PBS or GT-T551 medium, centrifuge at 1000rpm for 5min, and wash twice with PBS or GT-T551 medium. Count the number of cells, activity and density, adjust the density of viable cells to 2×10 6 /ml, add 50 μl to each well, then there are 100,000 cells in each well.
3)抗体稀释:采用GT-T551培养基稀释双特异性F7AK3,将抗体起始浓度调整到10nM。 依次以1:5的比例稀释。将稀释好的抗体取100μl加入上述准备的细胞中,混匀,将96孔板放回培养箱,24小时后检测杀伤效果。3) Antibody dilution: The bispecific F7AK3 was diluted with GT-T551 medium, and the initial antibody concentration was adjusted to 10 nM. Dilute in a ratio of 1:5. Add 100 μl of the diluted antibody to the prepared cells above, mix well, put the 96-well plate back into the incubator, and detect the killing effect after 24 hours.
4)检测:通过PMA染色区分死活细胞,然后通过细胞计数计算出杀伤效率。4) Detection: distinguish dead and living cells by PMA staining, and then calculate the killing efficiency by cell counting.
5)数据处理:靶细胞杀伤比例的计算公式如下:5) Data processing: the formula for calculating the killing ratio of target cells is as follows:
靶细胞杀伤比例(百分数)=100×(仅有靶细胞孔读值-检测孔读值)/仅有检测孔读值。Target cell killing ratio (percentage)=100×(reading value of target cell only-reading value of detection well)/reading value of detection well only.
将所有检测孔的靶细胞杀伤比例对应的抗体浓度转变为log10,以此作为横坐标、以杀伤比例作为纵坐标制作曲线。F7AK3对敏感细胞株MCF、MDA-MB-231、MDA-MB-468、HCC1395的杀伤浓度-梯度曲线如图10所示;不同细胞杀伤百分数如表5所示。F7AK3对不同的TROP2 +细胞,表现出不同的杀伤能力。 The antibody concentration corresponding to the killing ratio of target cells in all the detection wells was converted into log10, and a curve was drawn using this as the abscissa and the killing ratio as the vertical axis. The killing concentration-gradient curves of F7AK3 on sensitive cell lines MCF, MDA-MB-231, MDA-MB-468, and HCC1395 are shown in Figure 10; the killing percentages of different cells are shown in Table 5. F7AK3 exhibits different killing abilities to different TROP2 + cells.
表5双特异性抗体介导的靶细胞杀伤效果Table 5 Bispecific antibody-mediated target cell killing effect
 the MCFMCF MDA-MB-231MDA-MB-231 MDA-MB-468MDA-MB-468 HCC1395HCC1395
杀伤效率(%)Killing efficiency (%) 2525 5050 7575 8282
虽然,上文中已经用一般性说明及具体实施方案对本发明作了详尽的描述,但在本发明基础上,可以对之作一些修改或改进,这对本领域技术人员而言是显而易见的。因此,在不偏离本发明精神的基础上所做的这些修改或改进,均属于本发明要求保护的范围。Although the present invention has been described in detail with general descriptions and specific embodiments above, it is obvious to those skilled in the art that some modifications or improvements can be made on the basis of the present invention. Therefore, the modifications or improvements made on the basis of not departing from the spirit of the present invention all belong to the protection scope of the present invention.
工业实用性Industrial Applicability
本发明涉及基因工程抗体技术领域,具体涉及一种结合TROP2的抗体及靶向TROP2和CD3的双特异性抗体及其制备方法与应用。本发明提供的TROP2抗体具有良好的结合TROP2的能力,亲和力高;结合TROP2和CD3的双特异性抗体同时具有优异的抗TROP2和抗CD3抗体的生物学功能,能够在肿瘤细胞和免疫效应细胞之间搭建桥梁,有效激活免疫效应细胞和导向性免疫反应,显著增强了免疫细胞杀伤肿瘤细胞的功效,同时最大程度地降低了ADCC效应,具有较高的安全性,在肿瘤的免疫治疗中具有较好的应用前景。The invention relates to the technical field of genetic engineering antibodies, in particular to an antibody binding to TROP2, a bispecific antibody targeting TROP2 and CD3, and a preparation method and application thereof. The TROP2 antibody provided by the present invention has a good ability to bind TROP2 and has high affinity; the bispecific antibody that binds TROP2 and CD3 has excellent biological functions of anti-TROP2 and anti-CD3 antibodies, and can bind between tumor cells and immune effector cells Build a bridge between them, effectively activate immune effector cells and oriented immune responses, significantly enhance the efficacy of immune cells in killing tumor cells, and at the same time minimize the ADCC effect. Good application prospects.

Claims (16)

  1. 一种TROP2抗体,其特征在于,包括重链可变区和轻链可变区,所述重链可变区的CDR1、CDR2、CDR3分别具有SEQ ID NO.1-3所示的氨基酸序列,或者,其分别具有以SEQ ID NO.1-3所示的氨基酸序列为参考序列、含有如下突变中的一种或多种突变的组合的氨基酸序列:A TROP2 antibody, characterized in that it includes a heavy chain variable region and a light chain variable region, and the CDR1, CDR2, and CDR3 of the heavy chain variable region have the amino acid sequences shown in SEQ ID NO.1-3 respectively, Alternatively, they respectively have amino acid sequences that take the amino acid sequence shown in SEQ ID NO.1-3 as a reference sequence and contain one or a combination of the following mutations:
    (1)SEQ ID NO.1所示的氨基酸序列的第1位S突变为N;(1) The first S of the amino acid sequence shown in SEQ ID NO.1 is mutated to N;
    (2)SEQ ID NO.2所示的氨基酸序列的第4位P突变为R、K或G;(2) The fourth P of the amino acid sequence shown in SEQ ID NO.2 is mutated to R, K or G;
    (3)SEQ ID NO.3所示的氨基酸序列的第1位P突变为H、A;(3) The first P in the amino acid sequence shown in SEQ ID NO.3 is mutated to H and A;
    (4)SEQ ID NO.3所示的氨基酸序列的第2位N突变为E;(4) The second N of the amino acid sequence shown in SEQ ID NO.3 is mutated to E;
    所述轻链可变区的CDR1、CDR2和CDR3分别具有SEQ ID NO.4-6所示的氨基酸序列,或者,其分别具有以SEQ ID NO.4-6所示的氨基酸序列为参考序列,含有如下突变中的一种或多种突变的组合的氨基酸序列:The CDR1, CDR2 and CDR3 of the light chain variable region have the amino acid sequences shown in SEQ ID NO.4-6 respectively, or they respectively have the amino acid sequences shown in SEQ ID NO.4-6 as the reference sequence, An amino acid sequence comprising a combination of one or more of the following mutations:
    (1)SEQ ID NO.4所示的氨基酸序列的第5位G突变为N或E;(1) The fifth G of the amino acid sequence shown in SEQ ID NO.4 is mutated to N or E;
    (2)SEQ ID NO.4所示的氨基酸序列的第7位S突变为R或K;(2) The seventh S of the amino acid sequence shown in SEQ ID NO.4 is mutated to R or K;
    (3)SEQ ID NO.5所示的氨基酸序列的第1位A突变为R;(3) The first A of the amino acid sequence shown in SEQ ID NO.5 is mutated to R;
    (4)SEQ ID NO.5所示的氨基酸序列的第3位S突变为G、H或R;(4) The third S of the amino acid sequence shown in SEQ ID NO.5 is mutated to G, H or R;
    (5)SEQ ID NO.5所示的氨基酸序列的第4位S突变为K。(5) The fourth S of the amino acid sequence shown in SEQ ID NO.5 is mutated into K.
  2. 一种TROP2抗体,其特征在于,包括重链可变区和轻链可变区,所述重链可变区的CDR1具有SEQ ID NO.1、7任一所示的氨基酸序列,CDR2具有SEQ ID NO.2、8、9任一所示的氨基酸序列,CDR3具有SEQ ID NO.3、10任一所示的氨基酸序列;A TROP2 antibody, characterized in that it comprises a heavy chain variable region and a light chain variable region, the CDR1 of the heavy chain variable region has the amino acid sequence shown in any one of SEQ ID NO.1 and 7, and the CDR2 has the amino acid sequence shown in SEQ ID NO.1, 7. The amino acid sequence shown in any one of ID NO.2, 8, 9, CDR3 has the amino acid sequence shown in any one of SEQ ID NO.3, 10;
    轻链可变区的CDR1具有SEQ ID NO.4、11、12任一所示的氨基酸序列,CDR2具有SEQ ID NO.5、13、14任一所示的氨基酸序列,CDR3具有SEQ ID NO.6、15任一所示的氨基酸序列;The CDR1 of the light chain variable region has the amino acid sequence shown in any one of SEQ ID NO.4, 11, 12, the CDR2 has the amino acid sequence shown in any one of SEQ ID NO.5, 13, 14, and the CDR3 has the amino acid sequence shown in SEQ ID NO. 6. The amino acid sequence shown in any one of 15;
    优选地,所述重链可变区的CDR为如下任一种:Preferably, the CDRs of the heavy chain variable region are any of the following:
    (1)CDR1具有SEQ ID NO.1所示的氨基酸序列,CDR2具有SEQ ID NO.2所示的氨基酸序列,CDR3具有SEQ ID NO.3所示的氨基酸序列;(1) CDR1 has the amino acid sequence shown in SEQ ID NO.1, CDR2 has the amino acid sequence shown in SEQ ID NO.2, and CDR3 has the amino acid sequence shown in SEQ ID NO.3;
    (2)CDR1具有SEQ ID NO.7所示的氨基酸序列,CDR2具有SEQ ID NO.9所示的氨基酸序列,CDR3具有SEQ ID NO.3所示的氨基酸序列;(2) CDR1 has the amino acid sequence shown in SEQ ID NO.7, CDR2 has the amino acid sequence shown in SEQ ID NO.9, and CDR3 has the amino acid sequence shown in SEQ ID NO.3;
    (3)CDR1具有SEQ ID NO.7所示的氨基酸序列,CDR2具有SEQ ID NO.8所示的氨基酸序列,CDR3具有SEQ ID NO.3所示的氨基酸序列;(3) CDR1 has the amino acid sequence shown in SEQ ID NO.7, CDR2 has the amino acid sequence shown in SEQ ID NO.8, and CDR3 has the amino acid sequence shown in SEQ ID NO.3;
    (4)CDR1具有SEQ ID NO.7所示的氨基酸序列,CDR2具有SEQ ID NO.8所示的氨基酸序列,CDR3具有SEQ ID NO.10所示的氨基酸序列;(4) CDR1 has the amino acid sequence shown in SEQ ID NO.7, CDR2 has the amino acid sequence shown in SEQ ID NO.8, and CDR3 has the amino acid sequence shown in SEQ ID NO.10;
    轻链可变区的CDR为如下任一种:The CDRs of the light chain variable region are any of the following:
    (1)CDR1具有SEQ ID NO.4所示的氨基酸序列,CDR2具有SEQ ID NO.5所示的氨基酸序列,CDR3具有SEQ ID NO.6所示的氨基酸序列;(1) CDR1 has the amino acid sequence shown in SEQ ID NO.4, CDR2 has the amino acid sequence shown in SEQ ID NO.5, and CDR3 has the amino acid sequence shown in SEQ ID NO.6;
    (2)CDR1具有SEQ ID NO.4所示的氨基酸序列,CDR2具有SEQ ID NO.13所示的氨基酸序列,CDR3具有SEQ ID NO.15所示的氨基酸序列;(2) CDR1 has the amino acid sequence shown in SEQ ID NO.4, CDR2 has the amino acid sequence shown in SEQ ID NO.13, and CDR3 has the amino acid sequence shown in SEQ ID NO.15;
    (3)CDR1具有SEQ ID NO.11所示的氨基酸序列,CDR2具有SEQ ID NO.13所示的氨基酸 序列,CDR3具有SEQ ID NO.15所示的氨基酸序列;(3) CDR1 has the amino acid sequence shown in SEQ ID NO.11, CDR2 has the amino acid sequence shown in SEQ ID NO.13, and CDR3 has the amino acid sequence shown in SEQ ID NO.15;
    (4)CDR1具有SEQ ID NO.12所示的氨基酸序列,CDR2具有SEQ ID NO.13所示的氨基酸序列,CDR3具有SEQ ID NO.15所示的氨基酸序列;(4) CDR1 has the amino acid sequence shown in SEQ ID NO.12, CDR2 has the amino acid sequence shown in SEQ ID NO.13, and CDR3 has the amino acid sequence shown in SEQ ID NO.15;
    (5)CDR1具有SEQ ID NO.12所示的氨基酸序列,CDR2具有SEQ ID NO.14所示的氨基酸序列,CDR3具有SEQ ID NO.15所示的氨基酸序列;(5) CDR1 has the amino acid sequence shown in SEQ ID NO.12, CDR2 has the amino acid sequence shown in SEQ ID NO.14, and CDR3 has the amino acid sequence shown in SEQ ID NO.15;
    (6)CDR1具有SEQ ID NO.4所示的氨基酸序列,CDR2具有SEQ ID NO.14所示的氨基酸序列,CDR3具有SEQ ID NO.15所示的氨基酸序列;(6) CDR1 has the amino acid sequence shown in SEQ ID NO.4, CDR2 has the amino acid sequence shown in SEQ ID NO.14, and CDR3 has the amino acid sequence shown in SEQ ID NO.15;
    更优选地,所述重链可变区的CDR和轻链可变区的CDR为如下任一种:More preferably, the CDR of the heavy chain variable region and the CDR of the light chain variable region are any of the following:
    (1)重链可变区的CDR1具有SEQ ID NO.1所示的氨基酸序列,CDR2具有SEQ ID NO.2所示的氨基酸序列,CDR3具有SEQ ID NO.3所示的氨基酸序列;轻链可变区的CDR1具有SEQ ID NO.4所示的氨基酸序列,CDR2具有SEQ ID NO.5所示的氨基酸序列,CDR3具有SEQ ID NO.6所示的氨基酸序列;(1) CDR1 of the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.1, CDR2 has the amino acid sequence shown in SEQ ID NO.2, and CDR3 has the amino acid sequence shown in SEQ ID NO.3; light chain CDR1 of the variable region has the amino acid sequence shown in SEQ ID NO.4, CDR2 has the amino acid sequence shown in SEQ ID NO.5, and CDR3 has the amino acid sequence shown in SEQ ID NO.6;
    (2)重链可变区的CDR1具有SEQ ID NO.7所示的氨基酸序列,CDR2具有SEQ ID NO.8所示的氨基酸序列,CDR3具有SEQ ID NO.3所示的氨基酸序列;轻链可变区的CDR1具有SEQ ID NO.4所示的氨基酸序列,CDR2具有SEQ ID NO.13所示的氨基酸序列,CDR3具有SEQ ID NO.15所示的氨基酸序列;(2) CDR1 of the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.7, CDR2 has the amino acid sequence shown in SEQ ID NO.8, and CDR3 has the amino acid sequence shown in SEQ ID NO.3; light chain CDR1 of the variable region has the amino acid sequence shown in SEQ ID NO.4, CDR2 has the amino acid sequence shown in SEQ ID NO.13, and CDR3 has the amino acid sequence shown in SEQ ID NO.15;
    (3)重链可变区的CDR1具有SEQ ID NO.7所示的氨基酸序列,CDR2具有SEQ ID NO.8所示的氨基酸序列,CDR3具有SEQ ID NO.3所示的氨基酸序列;轻链可变区的CDR1具有SEQ ID NO.12所示的氨基酸序列,CDR2具有SEQ ID NO.13所示的氨基酸序列,CDR3具有SEQ ID NO.15所示的氨基酸序列;(3) CDR1 of the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.7, CDR2 has the amino acid sequence shown in SEQ ID NO.8, and CDR3 has the amino acid sequence shown in SEQ ID NO.3; light chain CDR1 of the variable region has the amino acid sequence shown in SEQ ID NO.12, CDR2 has the amino acid sequence shown in SEQ ID NO.13, and CDR3 has the amino acid sequence shown in SEQ ID NO.15;
    (4)重链可变区的CDR1具有SEQ ID NO.7所示的氨基酸序列,CDR2具有SEQ ID NO.8所示的氨基酸序列,CDR3具有SEQ ID NO.3所示的氨基酸序列;轻链可变区的CDR1具有SEQ ID NO.12所示的氨基酸序列,CDR2具有SEQ ID NO.14所示的氨基酸序列,CDR3具有SEQ ID NO.15所示的氨基酸序列。(4) CDR1 of the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.7, CDR2 has the amino acid sequence shown in SEQ ID NO.8, and CDR3 has the amino acid sequence shown in SEQ ID NO.3; light chain CDR1 of the variable region has the amino acid sequence shown in SEQ ID NO.12, CDR2 has the amino acid sequence shown in SEQ ID NO.14, and CDR3 has the amino acid sequence shown in SEQ ID NO.15.
  3. 根据权利要求2所述的TROP2抗体,其特征在于,所述重链可变区具有SEQ ID NO.16、18-20任一所示的氨基酸序列,轻链可变区具有SEQ ID NO.17、21-25任一所示的氨基酸序列;The TROP2 antibody according to claim 2, wherein the heavy chain variable region has the amino acid sequence shown in any one of SEQ ID NO.16, 18-20, and the light chain variable region has SEQ ID NO.17 , the amino acid sequence shown in any one of 21-25;
    或者,所述重链可变区、轻链可变区与前述序列相比具有满足以下二者中至少一个:a)结合相同抗原表位;b)序列同一性大于70%、80%、85%、90%、97%、98%或99%的氨基酸序列;Alternatively, compared with the aforementioned sequence, the heavy chain variable region and the light chain variable region have at least one of the following two requirements: a) binding to the same antigenic epitope; b) sequence identity greater than 70%, 80%, 85% %, 90%, 97%, 98% or 99% of the amino acid sequence;
    优选地,所述重链可变区具有SEQ ID NO.16所示的氨基酸序列,轻链可变区具有SEQ ID NO.17所示的氨基酸序列;Preferably, the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.16, and the light chain variable region has the amino acid sequence shown in SEQ ID NO.17;
    或者,所述重链可变区具有SEQ ID NO.19所示的氨基酸序列,轻链可变区具有SEQ ID NO.21所示的氨基酸序列;Alternatively, the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.19, and the light chain variable region has the amino acid sequence shown in SEQ ID NO.21;
    或者,所述重链可变区具有SEQ ID NO.19所示的氨基酸序列,轻链可变区具有SEQ ID NO.23所示的氨基酸序列;Alternatively, the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.19, and the light chain variable region has the amino acid sequence shown in SEQ ID NO.23;
    或者,所述重链可变区具有SEQ ID NO.19所示的氨基酸序列,轻链可变区具有SEQ ID NO.24所示的氨基酸序列。Alternatively, the heavy chain variable region has the amino acid sequence shown in SEQ ID NO.19, and the light chain variable region has the amino acid sequence shown in SEQ ID NO.24.
  4. 根据权利要求1~3任一项所述的TROP2抗体,其特征在于,所述重链的Fc片段为人或人 源化抗体的Fc片段,所述人或人源化抗体为IgG1、IgG2、IgA、IgE、IgM、IgG4或IgD。The TROP2 antibody according to any one of claims 1 to 3, wherein the Fc fragment of the heavy chain is the Fc fragment of a human or humanized antibody, and the human or humanized antibody is IgG1, IgG2, IgA , IgE, IgM, IgG4 or IgD.
  5. 根据权利要求1~4任一项所述的TROP2抗体,其特征在于,所述抗体的重链具有SEQ ID NO.27、29任一所示的氨基酸序列,轻链具有SEQ ID NO.28、30任一所示的氨基酸序列;The TROP2 antibody according to any one of claims 1 to 4, wherein the heavy chain of the antibody has the amino acid sequence shown in any one of SEQ ID NO.27, 29, and the light chain has the amino acid sequence shown in SEQ ID NO.28, 30 any one of the amino acid sequences shown;
    或者,所述重链、轻链与前述序列相比具有满足以下二者中至少一个:a)结合相同抗原表位;b)序列同一性大于70%、80%、85%、90%、97%、98%或99%的氨基酸序列;Alternatively, compared with the aforementioned sequence, the heavy chain and light chain have at least one of the following two requirements: a) binding to the same antigenic epitope; b) sequence identity greater than 70%, 80%, 85%, 90%, 97% %, 98% or 99% of the amino acid sequence;
    优选地,所述抗体的重链具有SEQ ID NO.27所示的氨基酸序列,轻链具有SEQ ID NO.28所示的氨基酸序列;或者,所述抗体的重链具有SEQ ID NO.29所示的氨基酸序列,轻链具有SEQ ID NO.30所示的氨基酸序列。Preferably, the heavy chain of the antibody has the amino acid sequence shown in SEQ ID NO.27, and the light chain has the amino acid sequence shown in SEQ ID NO.28; or, the heavy chain of the antibody has the amino acid sequence shown in SEQ ID NO.29 The amino acid sequence shown, the light chain has the amino acid sequence shown in SEQ ID NO.30.
  6. 含有权利要求1~5任一项所述的TROP2抗体的单链抗体、Fab抗体、微型抗体、嵌合抗体、全抗体免疫球蛋白IgG1、IgG2、IgA、IgE、IgM、IgG4或IgD、双特异性抗体、多特异性抗体。Single chain antibody, Fab antibody, miniature antibody, chimeric antibody, full antibody immunoglobulin IgG1, IgG2, IgA, IgE, IgM, IgG4 or IgD containing the TROP2 antibody described in any one of claims 1 to 5, bispecific Antibodies, multispecific antibodies.
  7. 结合TROP2和CD3的双特异性抗体,其特征在于,包括:A bispecific antibody binding to TROP2 and CD3, characterized in that it comprises:
    第一结构域,结合滋养层细胞表面抗原2,The first domain, which binds trophoblast surface antigen 2,
    以及,第二结构域,结合T细胞表面抗原CD3,and, the second domain, which binds the T cell surface antigen CD3,
    所述第一结构域包括重链可变区和轻链可变区,所述重链可变区和轻链可变区为如权利要求1~3任一项所述的TROP2抗体的重链可变区和轻链可变区。The first structural domain comprises a heavy chain variable region and a light chain variable region, and the heavy chain variable region and the light chain variable region are the heavy chain of the TROP2 antibody according to any one of claims 1 to 3 Variable region and light chain variable region.
  8. 根据权利要求7所述的结合TROP2和CD3的双特异性抗体,其特征在于,所述第一结构域为2个通过二硫键连接的完整的轻链-重链对,其重链和轻链的氨基酸序列为如权利要求5所述的TROP2抗体的重链和轻链的氨基酸序列。The bispecific antibody binding TROP2 and CD3 according to claim 7, characterized in that the first domain is two complete light chain-heavy chain pairs connected by disulfide bonds, the heavy chain and light chain The amino acid sequence of the chain is the amino acid sequence of the heavy chain and the light chain of the TROP2 antibody as claimed in claim 5.
  9. 根据权利要求7或8所述的结合TROP2和CD3的双特异性抗体,其特征在于,所述第二结构域的重链可变区具有SEQ ID NO.31所示的氨基酸序列,轻链可变区具有SEQ ID NO.32所示的氨基酸序列;The bispecific antibody binding to TROP2 and CD3 according to claim 7 or 8, wherein the heavy chain variable region of the second domain has the amino acid sequence shown in SEQ ID NO.31, and the light chain can be The variable region has the amino acid sequence shown in SEQ ID NO.32;
    优选地,所述第二结构域的轻链可变区和重链可变区通过连接肽连接为单链抗体,所述单链抗体具有SEQ ID NO.33所示的氨基酸序列。Preferably, the light chain variable region and the heavy chain variable region of the second structural domain are connected into a single-chain antibody through a connecting peptide, and the single-chain antibody has the amino acid sequence shown in SEQ ID NO.33.
  10. 根据权利要求7~9任一项所述的结合TROP2和CD3的双特异性抗体,其特征在于,所述第二结构域包含2个单链抗体,所述双特异性抗体为通过如下任意一种方式连接而成的对称结构:The bispecific antibody that binds to TROP2 and CD3 according to any one of claims 7 to 9, wherein the second domain contains two single-chain antibodies, and the bispecific antibody is obtained through any of the following methods: A symmetrical structure connected in several ways:
    (1)所述第二结构域的2个单链抗体的C端分别通过连接肽与所述第一结构域的2条重链的N端连接;(1) The C-terminals of the two single-chain antibodies of the second domain are respectively connected to the N-terminals of the two heavy chains of the first domain through a connecting peptide;
    (2)所述第二结构域的2个单链抗体的N端分别通过连接肽与所述第一结构域的2条重链的C端连接;(2) The N-terminals of the two single-chain antibodies of the second domain are respectively connected to the C-terminals of the two heavy chains of the first domain through a connecting peptide;
    优选地,所述连接肽的氨基酸序列为(GGGGX)n,其中,X为Gly或Ser,n为1-4的自然数;Preferably, the amino acid sequence of the connecting peptide is (GGGGX)n, wherein X is Gly or Ser, and n is a natural number of 1-4;
    更优选地,所述连接肽的氨基酸序列如SEQ ID NO.34所示。More preferably, the amino acid sequence of the connecting peptide is shown in SEQ ID NO.34.
  11. 根据权利要求7~10任一项所述的结合TROP2和CD3的双特异性抗体,其特征在于,所述第一结构域的重链与所述第二结构域经连接肽连接后具有SEQ ID NO.35或36所示的氨基酸序列,轻链具有SEQ ID NO.28或30所示的氨基酸序列;The bispecific antibody binding to TROP2 and CD3 according to any one of claims 7 to 10, characterized in that the heavy chain of the first domain and the second domain have SEQ ID after being connected via a connecting peptide The amino acid sequence shown in NO.35 or 36, the light chain has the amino acid sequence shown in SEQ ID NO.28 or 30;
    优选地,所述第一结构域的重链与所述第二结构域经连接肽连接后具有SEQ ID NO.35所示 的氨基酸序列,轻链具有SEQ ID NO.28所示的氨基酸序列,或者,所述第一结构域的重链与所述第二结构域经连接肽连接后具有SEQ ID NO.36所示的氨基酸序列,轻链具有SEQ ID NO.30所示的氨基酸序列。Preferably, the heavy chain of the first structural domain has the amino acid sequence shown in SEQ ID NO.35 after connecting the second structural domain with the connecting peptide, and the light chain has the amino acid sequence shown in SEQ ID NO.28, Alternatively, the heavy chain of the first structural domain and the second structural domain have the amino acid sequence shown in SEQ ID NO.36 after connecting the second structural domain, and the light chain has the amino acid sequence shown in SEQ ID NO.30.
  12. 一种核酸分子,其特征在于,其编码权利要求1~5任一项所述的TROP2抗体,或者,其编码权利要求7~11任一项所述的结合TROP2和CD3的双特异性抗体。A nucleic acid molecule, characterized in that it encodes the TROP2 antibody according to any one of claims 1-5, or it encodes the bispecific antibody binding to TROP2 and CD3 according to any one of claims 7-11.
  13. 含有权利要求12所述的核酸分子的生物材料,所述生物材料包括重组DNA、表达盒、载体、宿主细胞、工程菌或细胞系。The biological material containing the nucleic acid molecule of claim 12, said biological material comprising recombinant DNA, expression cassette, vector, host cell, engineering bacteria or cell line.
  14. 权利要求1~5任一项所述的TROP2抗体或权利要求7~11任一项所述的结合TROP2和CD3的双特异性抗体的制备方法,其特征在于,包括:将编码所述抗体的核酸导入宿主细胞中,获得稳定表达所述双特异性抗体的宿主细胞;培养宿主细胞,经分离纯化获得所述抗体。The preparation method of the TROP2 antibody according to any one of claims 1 to 5 or the bispecific antibody binding to TROP2 and CD3 according to any one of claims 7 to 11, characterized in that it comprises: encoding the antibody The nucleic acid is introduced into the host cell to obtain the host cell stably expressing the bispecific antibody; the host cell is cultured, and the antibody is obtained through separation and purification.
  15. 权利要求1~5任一项所述的TROP2抗体或权利要求7~11任一项所述的结合TROP2和CD3的双特异性抗体或权利要求12所述的核酸分子或权利要求13所述的生物材料的如下任一种应用:The TROP2 antibody of any one of claims 1 to 5 or the bispecific antibody binding to TROP2 and CD3 of any one of claims 7 to 11 or the nucleic acid molecule of claim 12 or the nucleic acid molecule of claim 13 Any of the following applications of biomaterials:
    (1)在制备用于诊断、预防或治疗TROP2表达的相关疾病的药物中的应用;(1) Application in the preparation of medicines for diagnosing, preventing or treating diseases related to TROP2 expression;
    (2)在制备用于诊断、预防或治疗以TROP2为靶标的疾病的药物中的应用;(2) Application in the preparation of drugs for diagnosing, preventing or treating diseases targeting TROP2;
    (3)在制备用于杀伤TROP2表达的细胞的药物中的应用;(3) Application in the preparation of drugs for killing cells expressing TROP2;
    (4)在制备TROP2和/或CD3的检测试剂中的应用;(4) Application in the preparation of detection reagents for TROP2 and/or CD3;
    (5)在制备适用于CAR-T疗法的相关试剂中的应用;(5) Application in the preparation of related reagents suitable for CAR-T therapy;
    (6)在制备免疫毒素或标记抗体中的应用。(6) Application in preparation of immunotoxin or labeled antibody.
  16. 包含权利要求1~5任一项所述的TROP2抗体或权利要求7~11任一项所述的结合TROP2和CD3的双特异性抗体的多特异性抗体、融合蛋白、免疫毒素、药物或检测试剂。A multispecific antibody, fusion protein, immunotoxin, drug or detection comprising the TROP2 antibody according to any one of claims 1 to 5 or the bispecific antibody binding to TROP2 and CD3 according to any one of claims 7 to 11 reagent.
PCT/CN2022/090939 2021-06-30 2022-05-05 Antibody binding to trop2, bispecific antibody targeting trop2 and cd3, preparation methods therefor and uses thereof WO2023273595A1 (en)

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