WO2012037030A2 - Method and device for isolating cells from heterogeneous solution using microfluidic trapping vortices - Google Patents
Method and device for isolating cells from heterogeneous solution using microfluidic trapping vortices Download PDFInfo
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- WO2012037030A2 WO2012037030A2 PCT/US2011/051224 US2011051224W WO2012037030A2 WO 2012037030 A2 WO2012037030 A2 WO 2012037030A2 US 2011051224 W US2011051224 W US 2011051224W WO 2012037030 A2 WO2012037030 A2 WO 2012037030A2
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/02—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
- C12Q1/24—Methods of sampling, or inoculating or spreading a sample; Methods of physically isolating an intact microorganisms
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- B01L3/502—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures
- B01L3/5027—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip
- B01L3/502746—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip characterised by the means for controlling flow resistance, e.g. flow controllers, baffles
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- B01L3/502—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures
- B01L3/5027—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip
- B01L3/502761—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures by integrated microfluidic structures, i.e. dimensions of channels and chambers are such that surface tension forces are important, e.g. lab-on-a-chip specially adapted for handling suspended solids or molecules independently from the bulk fluid flow, e.g. for trapping or sorting beads, for physically stretching molecules
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- C12M23/00—Constructional details, e.g. recesses, hinges
- C12M23/02—Form or structure of the vessel
- C12M23/16—Microfluidic devices; Capillary tubes
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- C12M47/00—Means for after-treatment of the produced biomass or of the fermentation or metabolic products, e.g. storage of biomass
- C12M47/04—Cell isolation or sorting
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
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- G01N1/00—Sampling; Preparing specimens for investigation
- G01N1/28—Preparing specimens for investigation including physical details of (bio-)chemical methods covered elsewhere, e.g. G01N33/50, C12Q
- G01N1/40—Concentrating samples
- G01N1/4077—Concentrating samples by other techniques involving separation of suspended solids
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- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/5005—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells
- G01N33/5091—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells for testing the pathological state of an organism
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- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
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- G01N33/58—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances
- G01N33/582—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances with fluorescent label
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- B01L2200/00—Solutions for specific problems relating to chemical or physical laboratory apparatus
- B01L2200/06—Fluid handling related problems
- B01L2200/0647—Handling flowable solids, e.g. microscopic beads, cells, particles
- B01L2200/0668—Trapping microscopic beads
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- B01L2300/0809—Geometry, shape and general structure rectangular shaped
- B01L2300/0816—Cards, e.g. flat sample carriers usually with flow in two horizontal directions
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- B01L2300/08—Geometry, shape and general structure
- B01L2300/0861—Configuration of multiple channels and/or chambers in a single devices
- B01L2300/0864—Configuration of multiple channels and/or chambers in a single devices comprising only one inlet and multiple receiving wells, e.g. for separation, splitting
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- B01L2300/0867—Multiple inlets and one sample wells, e.g. mixing, dilution
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- B—PERFORMING OPERATIONS; TRANSPORTING
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- B01L2300/08—Geometry, shape and general structure
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- B01L2300/087—Multiple sequential chambers
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- B01L2400/04—Moving fluids with specific forces or mechanical means
- B01L2400/0475—Moving fluids with specific forces or mechanical means specific mechanical means and fluid pressure
- B01L2400/0487—Moving fluids with specific forces or mechanical means specific mechanical means and fluid pressure fluid pressure, pneumatics
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- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
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- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
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- B01L2400/08—Regulating or influencing the flow resistance
- B01L2400/084—Passive control of flow resistance
- B01L2400/086—Passive control of flow resistance using baffles or other fixed flow obstructions
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- G—PHYSICS
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- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
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- G01N1/40—Concentrating samples
Definitions
- the field of the invention generally relates to micro fluidic devices and methods for the isolation and sorting of cells or particles. More particularly, the field of the invention pertains to microfluidic devices and methods that utilize microfluidic trapping vortices for isolating cells or particles from a heterogeneous solution.
- the standard benchtop centrifuge is one of the most common instruments in the life science laboratory used ubiquitously for sample preparation in cell biology research and medical diagnostics. Typical sample preparation procedures require multiple centrifugation steps for cell labeling and washing, which can be a time consuming, laborious, and costly process for diagnostics and research. In fact, while assays themselves have widely been miniaturized and automated, sample preparation required for these assays has been identified as a key target for future automation.
- Centrifuges perform three critical sample preparation steps that make them so widely used: (i) separation of cells by size/density, (ii) concentration of cells, and (iii) solution exchange. Because centrifuges can perform such disparate functions, realizing these functions in a miniaturized platform has been challenging. Miniaturized microfluidic approaches often successfully implement one or two of these functions. For example, cell separation by size and density has been accomplished by using physical obstacles, external forces, or fluidic forces to guide particles to defined locations in a microchannel for collection at different outlets. While these methods may offer high resolution cell separation, the typical collected liquid volume is similar to the injected liquid volume - that is, no significant concentration is achieved.
- This large output volume can hinder downstream cell detection platforms that may require scanning large fields of view to observe the cells of interest or leads to dilution of biomolecules of interest if collected cells must be lysed.
- a method of concentration must be used in-line with the separation system to reduce the liquid volume for rapid detection and analysis.
- Park et al. discloses a structure that continuously focuses microparticles passing through the device.
- small diameter (7 ⁇ diameter) polystyrene microspheres were run through a multi-orifice microchannel and trapping of these particles was not observed.
- Park et al. further observed that larger-sized particles tended to move away from the expanding channel regions where vortices were formed.
- Chiu et al discloses a 1-D channel having an expansion and constriction point to either slow down or speed up flow. Chiu et al. discloses that at high velocities the fluid may become separated to form internal microvortices which aid in the filtration operation by altering fluid flow dynamics. The microvortices, however, do not trap cells passing through the device. Rather, the apertures that line sections of the channel retain larger-sized cells by preventing the same from passing there through. While structures are disclosed that generate vortices for focusing or filtration aiding purposes, these structures are not used to selectively trap cells therein.
- a method of isolating cells includes providing a microfluidic device having at least one microfluidic channel coupled to an inlet and an outlet, the at least one microfluidic channel comprising at least one expansion region disposed along the length thereof, the at least one expansion region comprising an abrupt increase in a cross-sectional dimension of the at least one microfluidic channel configured to generate a vortex within the at least one expansion region in response to fluid flow.
- a solution containing a population of cells is flowed into the inlet. At least some of the cells are trapped within the vortex created within the at least one expansion region, the at least some of the cells having diameters > 10 ⁇ . The trapped cells are released from the plurality expansion regions by reducing the flow rate of solution through the at least one microfluidic channel.
- a method of exchanging solution around isolated cells includes providing a microfluidic device having at least one microfluidic channel coupled to an inlet and an outlet, the at least one microfluidic channel comprising at least one expansion region disposed along the length thereof, the at least one expansion region comprising an abrupt increase in a cross-sectional dimension of the at least one microfluidic channel configured to generate a vortex within the at least one expansion region in response to fluid flow.
- a first solution containing a population of cells is flowed into the inlet. At least a portion of the cells are trapped within the vortex created within the at least one expansion region.
- One or more solutions different from the first solution are then flowed into the inlet while continuously maintaining the vortex containing the trapped cells.
- a method of trapping particles or cells by size includes providing a microfluidic device having at least one microfluidic channel coupled to an inlet and an outlet, the at least one microfluidic channel comprising at least one expansion region disposed along the length thereof, the at least one expansion region comprising an abrupt increase in a cross-sectional dimension of the at least one microfluidic channel configured to generate a vortex within the at least one expansion region in response to fluid flow.
- a solution containing a plurality cells or particles is flowed into the inlet.
- At least some of the cells or particles are trapped within the vortex created within the at least one expansion region, wherein the cells or particles having a size above threshold value are substantially trapped within the vortex and wherein cells or particles having a size below a threshold value substantially pass by the vortex.
- a microfluidic device in another embodiment, includes a substrate containing at least one microfluidic channel coupled to at least one inlet and an outlet, the at least one microfluidic channel comprising at least one expansion region disposed along the length of the at least one microfluidic channel, the at least one expansion region comprising an abrupt increase of at least 80 ⁇ in a cross-sectional dimension of the at least one microfluidic channel, the at least one expansion region configured to generate a vortex within the at least one expansion region in response to fluid flow.
- a microfluidic system in another embodiment, includes a substrate containing at least one microfluidic channel coupled to at least one inlet and an outlet, the at least one microfluidic channel comprising at least one expansion region disposed along the length of the at least one microfluidic channel, the at least one expansion region comprising an abrupt increase in a cross-sectional dimension of the at least one microfluidic channel configured to generate a vortex within the at least one expansion region in response to fluid flow.
- the system includes at least one pump configured to pump fluid into the at least one inlet containing particles or cells.
- a computer is operatively coupled to the at least one pump and configured to adjust the flow rate of fluid passing through the at least one microfluidic channel.
- FIG. 1A illustrates a microfluidic system for isolating cells according to one embodiment.
- FIG. IB illustrates a micro system for isolating cells according to another embodiment.
- FIG. 1C illustrates a schematic representation of a microfluidic channel with a single expansion region.
- FIGS. 1D-1G illustrate various geometries of the expansion region.
- FIG. 1H illustrates a plan view of a microfluidic channel with multiple expansion regions.
- FIG. II illustrates a cross-sectional view taken along the line A-A' of FIG. 1H.
- FIG. 1J illustrates a schematic representation of a microfluidic channel with an expansion region according to another aspect of the invention.
- FIG. 2 illustrates a schematic view of a microfluidic device for isolating cells. Also included are graphical representations of forces acting on differing cell sizes at different points along the microfluidic device.
- FIG. 3 illustrates another microfluidic device for isolating cells having a parallel configuration.
- FIG. 4A schematically illustrates blood and cancer cells passing through a portion of the device having an expansion region that traps the larger cancer cells.
- a corresponding microscope image of a device containing several expansion regions is shown immediately below.
- FIG. 4B schematically illustrates a phosphate buffered saline (PBS) flush through the device of FIG. 4A showing evacuation of the red blood cells ( BCs) while cancer cells are retained in the expansion regions.
- PBS phosphate buffered saline
- FIGS. 4C-4F illustrates a blood sample spiked with HeLa cells passing through the microfluidic device of FIG. 3 at a Reynolds number (Rc) of 270.
- FIG. 4G illustrates a comparison of the capturing efficiency of the microfluidic device as a function of cell concentration.
- FIG. 5 A illustrates a graph of the enrichment ratio (%) achieved with the micro fluidic device at various blood concentrations.
- FIG. 5B illustrates a graph of the purity (%) achieved with the micro fluidic device at various blood concentrations.
- FIG. 5C illustrates a graph of the capture efficiency (%) achieved with the microfluidic device at various blood concentrations.
- FIG. 6A illustrates a schematic representation of solution containing MCF7 cells (Solution A) wherein the cells are trapped within a vortex created within an expansion region.
- FIG. 6B illustrates a schematic representation of a first solution exchange occurring with Solution B that includes streptavidin-coated microspheres.
- FIG. 6C illustrates a schematic representation of the reaction of the MCF7 cells with the streptavidin-coated microspheres.
- FIG. 6D illustrates a schematic representation of a second solution exchanged conducted with Solution C (i.e., PBS) that acts as a wash.
- Solution C i.e., PBS
- FIG. 6E illustrates a microscopic image of MCF7 cells corresponding to FIG. 6A wherein cells orbit within a vortex created within an expansion region of the microfluidic device. Below left is a magnified view of the rectangular region. Below right is a magnified view of the square region.
- FIG. 6F illustrates a microscopic image corresponding to FIG. 6B. Below left is a magnified view of the rectangular region. Below right is a magnified view of the square region.
- FIG. 6G illustrates a microscopic image corresponding to FIG. 6C. Below left is a magnified view of the rectangular region. Below right is a magnified view of the square region.
- FIG. 6H illustrates a microscopic image corresponding to FIG. 6D. Below left is a magnified view of the rectangular region. Below right is a magnified view of the square region.
- FIG. 7 illustrates a microfluidic device according to another embodiment that includes three inlets coupled to three different solutions: cell sample, labeling agent, and wash.
- FIG. 8A illustrates the sequential steps of trapping, fluorescent solution exchange, reaction, and wash conducted on the device of FIG. 7.
- FIG. 9 illustrates a fluorescent image of a cluster of cells that was sequentially trapped inside the fluid vortex, fixed with paraformaldehyde, permeabilized, and labeled with anti-Cytokeratin-PE & DAPI.
- FIG. 10 illustrates a graph of the number of streptavi din-coated microbeads bound per cell (MCF7 cells covered with biotinylated anti-EpCAM) as a function of time for both the microfluidic device and standard centrifugation.
- FIG. 1 1 illustrates a graph of the relative normalized frequency as a function of number of beads bound per cell for both the microfluidic device and standard centrifugation.
- FIG. 1A illustrates a microfluidic device 10 for isolating cells 12 from a heterogeneous solution containing cells 12 of different sizes. While the microfluidic device 10 is illustrated in FIG. 1A as being used for isolating cells 12 it should be understood that the microfluidic device 10 may also be used in connection with the isolation of particles (not shown). Thus, use of the term “cell” or “cells” herein should be interchangeable with particle or particles. As seen in FIG. 1 A, the microfluidic device 10 includes a substrate 14 that contains a microfluidic channel 16 coupled to an inlet 18 and an outlet 20. The dimensions of the microfluidic channel 16 may vary.
- the microfluidic channel may have a width of 50 ⁇ and a height of 70 ⁇ .
- Typical dimensions for the width of microfluidic channel 16 are in the range of 20 ⁇ to 200 ⁇ .
- Typical dimensions for the height of the microfluidic channel 1 are the range of 20 ⁇ to 500 ⁇ .
- the length may also vary but it generally is several centimeters in length (e.g., 4.5 cm).
- the substrate 14 may be formed from conventional materials used for microfluidic devices. These include glass, silicon, or poly dimethyls iloxane (PDMS). For PDMS, soft lithography techniques may be used to create the microfluidic device 10.
- PDMS poly dimethyls iloxane
- a 4 inch silicon wafer is spin-coated with a 70 ⁇ thick layer of a negative photoresist (KMPR 1050, Microchem), and exposed to UV-light through a designed Cr-photomask and developed.
- PDMS Sylgard 184, Dow Corning
- Cured PDMS cast was separated from the mold and the inlet 18 and outlet 20 were punched with a pin vise (Pin vise set A, Technical Innovations Inc.).
- the now-punched PDMS layer was bonded to a slide glass by exposing both PDMS and a slide glass surfaces to air plasma (Plasma Cleaner, Harrick Plasma) to enclose the device.
- the inlet 18 actually includes two inlets - inlet 18' and inlet 18".
- the first inlet 18' is used to introduce the solution containing the heterogeneous population of cells 12.
- the second inlet 18" is used to introduce a second, different solution.
- the second inlet 18" may be used to introduce a wash solution, label (e.g., fluorescent label, antibody, nucleic acid dye, fluorogenic substrate), or other chemical agent (e.g., fixation agent or permeabilization agent) into the microfluidic channel 16.
- label e.g., fluorescent label, antibody, nucleic acid dye, fluorogenic substrate
- other chemical agent e.g., fixation agent or permeabilization agent
- the inlets 18', 18" are coupled to respective pumps 22, 24.
- Each pump 22, 24 can be used to deliver a set flow rate of the respective solution to the microfluidic device 10.
- Any type of pump known to those skilled in the art may be used in connection with the invention. These include, without limitation, syringe pumps, pumps operating on pressurized air to pump fluid, peristaltic or positive displacement pumps.
- FIG. 1A illustrates syringe pumps 22, 24 used with the microfluidic device 10.
- a Harvard Apparatus, PHD 2000 syringe pump may be used to sustain an overall flow rate ranging between 10 ⁇ /min and 4.5 ml/min.
- the settings of the pumps 22, 24 are set to generate a flow rate through the microfluidic device 10 greater than 100 ⁇ /min.
- FIG. 1 A illustrates a computer 40 that can be used as part of a system 100 to control the microfluidic device 10.
- the computer 40 typically contains at least one processor 42 therein that executes software residing in or stored on the computer 40.
- the computer 40 also may include a monitor 44 that can be used to display various parameters of the microfluidic device 10. These may include, for example, flow rates of pumps 22, 24, volume of fluid contained in pumps 22, 24, and other operational data.
- the computer 40 preferably interfaces with the pumps 22, 24 such that the computer 40 is able to adjust the individual flow rates or operational states of the pumps 22, 24.
- the computer 40 may control the pumps 22, 24 automatically using a preset algorithm or set of instructions stored in the computer 40. Alternatively, control of the pumps 22, 24 may be manually adjusted using an interface device commonly used with computers (e.g., keyboard, mouse, etc.)
- the computer 40 can ensure that the desired flow of solution of maintained in the microfluidic device 10. For instance, when one pump 22 is slowed or even turned off, the flow rate of the second pump 24 is increased to ensure that the desired flow rate is maintained.
- FIG. IB illustrates an alternative system 200 that uses a pressure driven pumping system 46.
- the pumping system 46 uses a source of pressurized gas 48 along with regulators 50 to pump a first fluid 52 (e.g., wash) and second fluid 54 (e.g. blood) into the device 10.
- first fluid 52 e.g., wash
- second fluid 54 e.g. blood
- liquid valves 56, 58 are provided on the input and output, respectively, of the device 10.
- a computer 40 is configured to control the pressure driven pumping system 46 and the liquid valves 56, 58.
- valve 56 may be used to open or close flow of either the first fluid 52 or the second fluid 54 to the device 10.
- Valve 58 can be used to switch outlet flows between a waste receptacle 60 and a collection device 62 which may include, as an example, a 96 well plate.
- the micro fluidic channel 16 includes a plurality of expansion regions 30 located at selected points along the length of the micro fluidic channel 16.
- the expansion regions 30 provide an abrupt increase in the width of the microfhiidic channel 16 that, at or above certain threshold flow rates, create a detached boundary layer that causes the formation of vortices within each expansion region 30. It is the vortices created within the expansion regions 30 that trap a subpopulation of cells 12 from a solution of heterogeneous cells 12 traveling through the micro fluidic device 10. These vortices, however, are different from the vortices created in the streamwise direction such as Dean vortices created in curved channel flows with inertia (See J.
- the most efficient trapping occurs for cells 12 having diameters greater than 15 ⁇ . At diameters of less than 10 ⁇ , trapping is less efficient (e.g. 5%). Thus, the diameters of the trapped cells 12 should be > 10 ⁇ in order for meaningful trapping to occur.
- the geometry of the expansion region 30 may vary.
- the expansion region 30 can be rectangular as illustrated in FIG. 1A but it may also include a square, triangle, polygonal, or semi-circular profile as illustrated in FIGS. 1C-1G.
- the trapping ability is better with the long side of the expansion region 30 being oriented parallel to the main microfhiidic channel 16.
- the leading wall 31 (illustrated in FIG. 1C) of the expansion region 30 should be angled at or above 45° with respect to the flow direction of the upstream microfhiidic channel 16.
- FIG. 1C illustrates a single expansion region 30 along with the upstream micro fluidic channel 16.
- the leading wall 31 should be angled at or above 45° with respect to the axis of flow illustrated as dashed line A in FIG. 1C.
- the expansion region 30 is an abrupt expansion in cross-sectional dimension (e.g., width or height) compared to the cross-sectional dimension in the immediately upstream portion of micro fluidic channel 16.
- the leading wall 31 is angled just less than 90° which is well above the minimum 45° threshold value.
- the expansion region 30 also has a trailing wall 33.
- the trailing wall 33 may be angled with respect to the flow direction A.
- the angle at which the trailing wall 33 is not significant may be any angle.
- the trailing wall 33 is angled a small amount which causes the trailing wall 33 to gradually taper back to the width of the microfluidic channel 16.
- the expansion region 30 includes a leading wall 31 that is curved.
- the leading wall 31 initially starts a gradually divergence away from the upstream microfluidic channel 16 that increasingly diverges along the length of the leading wall 31.
- various tangents taken along different points of the leading wall 31 will have significantly different angles compared to the axis of flow A.
- the angle ⁇ is low and less than 45°.
- the angle ⁇ 2 is steep and more than 45°.
- an average angle GAVE which represents the average angle with respect to the axis of flow A along the entire length of the leading wall 31 should be greater than 45 (OAVE >45°).
- FIG. 1H illustrates a plan view of several expansion regions 30 located along a length of a microfluidic channel 16.
- FIG. II illustrates a cross-sectional view taken along the line A-A' of FIG. 1H. Both FIGS. 1H and II illustrate various dimensions of the
- microfluidic channel 16 and expansion regions 30 are typically used as stated previously.
- typical dimensions for the width (w) of microfluidic channel 16 is in the range of 20 ⁇ to 200 ⁇ .
- Typical dimensions for the height (H) of the microfluidic channel 16 are the range of 20 ⁇ to 500 ⁇ .
- the expansion region 30 may extend a distance (x) that is in the range between 80 ⁇ and 800 ⁇ but should be at least 80 ⁇ .
- the expansion region 30 may extend a distance (y) that is in the range of 200 ⁇ to 2 mm. Adjacent expansion regions 30 may be separated by distances (z) typically greater than 20 ⁇ . In some embodiments, there may be a single expansion region 30 such that there is no adjacent expansion region 30.
- the cross-sectional profile of the microfluidic channel 16 may be substantially rectangular, trapezoidal, or square.
- the microfabrication process can lead to slightly trapezoidal cross-sections or corners that are slightly rounded.
- the channels 16 may also have circular or semi-circular cross sections although current fabrication techniques do not produce these geometries. These variations are intended to be covered by the methods and devices described herein.
- the expansion regions 30 may be disposed on opposing sides of the microfluidic channel 16. This enables a single microfluidic channel 16 to have greater capturing capabilities. Moreover, as explained in more detail below, this
- expansion regions 30 are offset from one another and interleave with expansion regions 30 on adjacent microfluidic channels 16 as seen in FIG. 3.
- the larger-sized cells 12 are trapped within the expansion regions 30 while the smaller-sized cells 12 are not trapped and continue to flow down the microfluidic channel 16 where they exit via outlet 20.
- Larger-sized cells 12 (those illustrated in the expansion regions 30) are trapped within a vortex flow that is created within the expansion regions 30.
- Smaller-sized cells 12 due to their size they are not trapped within the vortex flow and pass out of the expansion regions 30. Thus, smaller-sized cells 12 are not trapped by the vortex in the expansion regions 30 and continue to flow downstream in the microfluidic channel 16.
- FIG. 2 illustrates a microfluidic device 10 for isolating cells 12 from a heterogeneous solution containing cells 12 of different sizes as well as corresponding flows within the microfluidic channel 16 and expansion regions 30.
- FIG. 2 illustrates magnified views of three regions of the microfluidic channel 16 and expansion regions 30 as identified by views A, B, and C.
- a heterogeneous population of different sized cells 12 is pumped into the device via one of the syringe pumps 22, 24.
- the other syringe pump may contain a wash or other solution such as PBS.
- the cells 12 are randomly dispersed is the y-direction.
- the cells 12 experience two counteracting forces - a shear gradient lift force (FL shear gradient) that acts on the cells 12 to move the same toward the walls of the microfluidic channel 16 and a wall effect lift force (FL wall effect) that repels cells 12 away from the walls of the microfluidic channel 16.
- FL shear gradient shear gradient lift force
- FL wall effect wall effect lift force
- X eq is defined as the distance between the center of cells 12 and the wall of the microfluidic channel 16.
- the FL shear gradient force scales with the cube of the cell diameter (a), causing larger cells 12 to experience a larger FL shear gradient force.
- Size-dependent lateral migration drives cells 12 across streamlines past the detached boundary (separatrix) toward the vortex core where the cells 12 remain isolated and orbiting in the vortex. This enables size-selective trapping, as below a size cutoff, cells do not migrate at a sufficient rate to pass the separatrix and remain in focused streams, flowing out of the outlet 20.
- FIG. 3 illustrates another embodiment of a micro fluidic device 10 for isolating cells 12 that includes a plurality of channels 16 coupled to an inlet 18 and an outlet 20.
- FIG. 3 illustrates eight (8) separate channels 16 that arranged generally parallel to one another.
- Each microfluidic channel 16 has ten (10) separate expansion regions 30.
- any number of channels 16 may be used. The same applies with respect to the number of separate expansion regions 30 along a single microfluidic channel 16. Spacing between adjacent expansion regions 30 along a single microfluidic channel 16 may vary but 1 mm spacing has been found to work. Additional channels 16 may be added to create a massively parallel device 10.
- the channels 16 are straight with expansion regions 30 on adjacent channels 16 being staggered with respect to one other.
- FIG. 3 illustrates an array of channels 16 in a two- dimensional layout it should be understood that the array of channels 16 could also be configured in a three-dimensional layout. The three-dimensional configuration would allow even more throughput.
- the microfluidic channel 16 is a rectangular high-aspect ratio channel with a width of 50 ⁇ and a height of 70 ⁇ .
- the inlet 18 includes a first inlet 18' for the sample containing the cells 12 and a second inlet 18" that contains PBS or other wash solution.
- the duel inlet 18', 18" arrangement allows for easy and rapid solution exchange within the microfluidic device 10, providing, for example, a means to flush unmapped cells 12 and to enhance the final enrichment ratio and the purity of the collected samples.
- the length of the microfluidic device 10 was several centimeters long.
- the expansion regions 30 were placed in an alternating pattern in order to place the maximum number of expansion regions 30 in a given compact footprint. In the device of FIG.
- the expansion regions were squares having dimensions of 400 ⁇ x 400 ⁇ .
- the cells 12 may be released from the expansion regions 30 by allowing the vortices to reduce in size and ultimately dissipate. This can be accomplished by lowering the input flow rate (e.g., reduce flow rate(s) of pumps 22, 24). The reduced flow rate reduced the vortex size allowing the cells 12 trapped therein to be released into the flow of the microfluidic channel 16 and carried out the outlet 20 of the device.
- a flow rate of around 4 ml/minute has been found to work best with the device of FIG. 3.
- the flow rate may be rapidly decreased to substantially zero to stop the flow of fluid through the microfluidic device 10.
- the cells 12 can be collected on-chip rather than off-chip.
- the microfluidic device 10 of FIG. 3 was applied to separating and concentrating cancer cells (diameter of 20micrometers) from normal human blood cells (diameters range from 2 to 15 micrometers) to demonstrate utility for size-based enrichment and concentration in a high-throughput manner.
- Enriching and concentrating cancer cells from blood is particularly important for clinical diagnostics as circulating tumor cells (CTCs) can provide real-time information on patient status and monitoring of cancer therapies. Isolating viable CTCs from blood in a quick, effective and label-free approach remains a significant technical challenge - CTCs are rare events at rates as low as one cell per one billion blood cells.
- This device 10 addresses the need for rare cell enrichment with a massively parallel device that processes liquid volumes in the mL/min range, enriches target cells through size and density-based separation, and releases captured cells into a smaller concentrated volume.
- fluorescently-labeled breast cancer cells MCF-7 spiked into diluted human blood was injected into a device 10 similar to that illustrated in FIG. 3 at 4.4 mL/min rate.
- MCF7 breast cancer cells were cultured in media containing DMEM supplemented with 10% FBS, 1% bovine insulin, and 1% penicillin/streptomycin were trypsinized and resuspended before use.
- Spiked MCF-7 cells included single cells and 2-4 cell clusters, as clustered cells have been shown to be present at significant levels in clinical samples.
- Blood and cancer cells were observed to enter and orbit in the vortices during the injection step as illustrated in the schematic view of a single expansion region 30 in the upper panel of FIG. 4A.
- the lower panel of FIG. 4A illustrates a microscopic image showing a trapped cancer cell along with red blood cells contained in the expansion region 30. Red blood cells were observed to enter vortices even though particles of similar size did not migrate into vortices in experiments with dilute samples.
- the high cell concentration induces collisions and hydrodynamic disturbances between cells that lead to cross-stream migration and entrance into vortices.
- each expansion region 30 can maintain. After the vortex occupies the entire expansion region 30 a maximum of -40 single MCF7 cells can be maintained over a range of higher flow rates. For most spiking experiments conditions were kept well below this maximum.
- the vortex-trapped cells were "washed" with PBS without disrupting the vortices. This is illustrated in the upper panel of FIG. 4B.
- the lower panel of FIG. 4B illustrates a microscopic image showing the still trapped cancer cell after a PBS wash solution has been introduced to remove the smaller and denser RBCs.
- the microfluidic device 10 performs well when quantifying key metrics for target cell concentration, enrichment, and purity.
- 10 mL volume blood samples (n > 6 samples) of 5% v/v blood (i.e., 0.5 mL whole blood or -2.5 billion blood cells) spiked with -500 cancer cells were concentrated to a final volume of less than 200 mL (20-fold volumetric concentration) with relatively little blood cell contamination in ⁇ 3 min.
- This high level of enrichment leads to high purity of the cancer cells in the 200 mL final volume: -40% as seen in FIG.
- Cells captured in the microfluidic device 10 maintained high levels of viability. No significant changes were observed in cell viability (90.1% vs. 90.3% initial) after injecting cells through the device as determined by a fluorescent live/dead assay. Viable cells may be important for some sample preparation applications.
- Cells captured and released from the microfluidic device 10 are available for standard molecular assays such as immunostaining. To this end, unlabeled spiked blood samples were enriched with the microfluidic device 10. Cancer cells were then released and labeled in a microwell. Cancer cells stained positive for Cytokeratin-PE and DAPI and negative for CD45. This ability to enrich on one device but transfer cells in a small volume for further processing offers significant advantages for rare single cell analysis.
- FIGS. 4C-4F illustrate the results of similar enrichment of a blood sample spiked with HeLa cells using the microfluidic device 10 of FIG. 3 at a Reynolds number (Rc) of 270.
- the microfluidic device 10 is flushed with PBS wash once the HeLa cells were captured in the expansion regions 30.
- FIG. 4G illustrates a comparison of the capturing efficiency of the microfluidic device 10 as a function of cell concentration.
- the number of cells indicates the number of spiked HeLa cells processed through the microfluidic device 10.
- the microfluidic device 10 was also used to effectively label cells for specific molecular markers.
- traditional centrifugation cell samples are labeled for specific markers through a series of labeling and washing steps. This includes incubating the cells with labeling reagents in a centrifuge tube, concentrating the cells into a pellet with a benchtop centrifuge, removing the supernatant layer containing unbound labeling reagents through manual aspiration, and manually resuspending the cells in a new medium. These operations were performed within the microfluidic device 10 by trapping the cells within fluid vortices and sequentially exposing trapped orbiting cells to labeling reagents, followed by a PBS wash solution. Labeled cells were then released within a small volume into a collection vial by reducing flow.
- FIGS. 6A-6D illustrate, respectively, the trapping (FIG. 6A), first solution exchange (FIG. 6B), reaction (FIG. 6C), and second solution exchange (FIG. 6D).
- FIGS. 6E- 6H illustrate, respectively, microscope images corresponding to FIGS. 6A-6D of actual MCF7 cells incubated with biotinylated EpCAM that were injected into the microfluidic device 10. As seen in FIG. 6E, cells are trapped in the vortex, undergoing a constant rotating and orbiting motion.
- FIG. 6F illustrates the first solution exchange with streptavidin-coated microspheres. The streptavidin-coated microspheres enter the expansion region 30.
- FIG. 6G illustrates the continuous reaction of the streptavidin-coated microspheres with the MCF7 cells.
- FIG. 6H illustrates a solution exchange with a second solution (i.e., PBS wash).
- the PBS wash removes unbound microspheres (arrow A).
- the cells are released from vortex traps by lowering the flow rate through the microfluidic device 10 wherein the cells are collected into a 96-well-plate for characterization.
- Arrows B in FIG. 6H point to particles that are increasingly bound to the cell over 2 minutes.
- the microfluidic device 10 included three inlets 18', 18", and 18"'.
- One inlet 18' was coupled a syringe pump 22 that was used to deliver the cell sample.
- the second syringe pump 24 was used to deliver the fluorescent agent.
- the third syringe pump 26 is used to deliver wash (PBS). Size-based trapping of cancer cells from blood, sequential fluorescent labeling, and analysis of released cells were conducted in ⁇ 1 hour.
- Diluted human blood (10 mL) spiked with cancer cells was injected into the microfluidic device 10 for ⁇ 3 min to enrich the cancer cells. Trapped cells were sequentially prepared with a fixation agent (paraformaldehyde) and permeabilization agent and stained with fluorescent antibodies (anti-Cytokeratin-PE & DAPI) for 20 min. The sequence of trapping, first solution exchange, reaction, and second solution exchange is seen in FIGS. 8A-8D. Cells were then washed with PBS for ⁇ 1 min, and collected into a 96-well- plate for characterization. Collected cells labeled positive for cytokeratin and DAPI, indicating the success of sequential sample preparation as illustrated in FIG.
- FIG. 9 which shows a fluorescent image of a cluster of cells that was sequentially trapped inside the fluid vortex, fixed with paraformaldehyde, permeabilized, and labeled with anti-Cytokeratin-PE & DAPI.
- MCF7 cells covered with biotinylated anti-EpCAM are coated with streptavidin conjugated microbeads in ⁇ 5 minutes at the same level as a standard off-chip protocol after 30 minutes.
- FIG. 1A1 illustrates uniform labeling with microbeads over the cell population after 30 minutes.
- the microfluidic device 10 centrifuge-on-chip results in a larger number of beads bound per cell. The results above demonstrate a complete route to automation of all of the sample preparation processes required for cell analysis in a single simple platform.
- the devices 10 and methods described herein are useful for inexpensive and rapid circulating tumor cell (CTC) analysis.
- CTC detection and enumeration is a valuable and promising diagnostic tool for monitoring breast cancer status and outcome.
- CTCs are tumor- derived cells that spread via the bloodstream and can reflect the aggressiveness of a tumor.
- CTCs are rare events at rates as low as one cell per one billion cells.
- CTC isolation thus presents a significant technological challenge.
- the devices 10 and methods described herein can exploit the cell size difference between CTCs and blood cells (CTCs are 2-4 times larger than RBCs) to isolate viable CTCs from whole blood in a label-free manner.
- Other potential applications of the devices 10 and methods include prenatal testing that involves the isolation of fetal cells from maternal blood cells. Fetal cells of interest can be isolated without labeling or external bulk machines.
- the microfluidic device 10 has particular application for isolating CTCs, other applications include concentrating cells 12 obtained from a sample.
- cells 12 of interest having a size that enables trapping within expansion regions 30 can be captured then released into a sample in concentrated form.
- cells 12 contained in a biological source of fluid like urine, pleural fluid, and peritoneal washes can be run through the microfluidic device 10 to concentrate cells 12 contained therein.
- the microfluidic device 10 is well suited for concentrating cells 12. For example, on a volumetric basis, the microfluidic device 10 can concentrate cells 12 more than ten (10) or twenty (20) times the concentration of the cells 12 in the initial solution.
Abstract
Description
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US13/823,112 US9133499B2 (en) | 2010-09-14 | 2011-09-12 | Method and device for isolating cells from heterogeneous solution using microfluidic trapping vortices |
CA2809877A CA2809877C (en) | 2010-09-14 | 2011-09-12 | Method and device for isolating cells from heterogeneous solution using microfluidic trapping vortices |
AU2011302302A AU2011302302B2 (en) | 2010-09-14 | 2011-09-12 | Method and device for isolating cells from heterogeneous solution using microfluidic trapping vortices |
EP11825738.5A EP2616551B1 (en) | 2010-09-14 | 2011-09-12 | Method for isolating cells from heterogeneous solution using microfluidic trapping vortices |
US14/819,302 US10407709B2 (en) | 2010-09-14 | 2015-08-05 | Method and device for isolating cells from heterogeneous solution using microfluidic trapping vortices |
US14/948,119 US10351894B2 (en) | 2010-09-14 | 2015-11-20 | Method and device for isolating cells from heterogeneous solution using microfluidic trapping vortices |
US15/345,359 US20170114385A1 (en) | 2010-09-14 | 2016-11-07 | Method and device for isolating cells from heterogeneous solution using microfluidic trapping vortices |
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WO2012037030A3 (en) | 2012-06-07 |
CN104741157A (en) | 2015-07-01 |
US9133499B2 (en) | 2015-09-15 |
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AU2015200910A1 (en) | 2015-03-12 |
CA2809877A1 (en) | 2012-03-22 |
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EP2616551A4 (en) | 2016-05-04 |
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US20130171628A1 (en) | 2013-07-04 |
AU2011302302A1 (en) | 2013-03-21 |
US10351894B2 (en) | 2019-07-16 |
US20150355060A1 (en) | 2015-12-10 |
CN103261436A (en) | 2013-08-21 |
EP2616551B1 (en) | 2020-08-19 |
JP2013541331A (en) | 2013-11-14 |
US20160139015A1 (en) | 2016-05-19 |
JP5920895B2 (en) | 2016-05-25 |
AU2011302302B2 (en) | 2014-12-11 |
CA2809877C (en) | 2021-11-23 |
AU2015200910B2 (en) | 2016-09-22 |
CN103261436B (en) | 2015-03-25 |
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