WO2001079438A2 - A new polypeptide- human amyloid precursor protein-binding protein 9 and the polynucleotide encoding it - Google Patents

A new polypeptide- human amyloid precursor protein-binding protein 9 and the polynucleotide encoding it Download PDF

Info

Publication number
WO2001079438A2
WO2001079438A2 PCT/CN2001/000530 CN0100530W WO0179438A2 WO 2001079438 A2 WO2001079438 A2 WO 2001079438A2 CN 0100530 W CN0100530 W CN 0100530W WO 0179438 A2 WO0179438 A2 WO 0179438A2
Authority
WO
WIPO (PCT)
Prior art keywords
polypeptide
polynucleotide
binding protein
precursor protein
amyloid precursor
Prior art date
Application number
PCT/CN2001/000530
Other languages
French (fr)
Chinese (zh)
Other versions
WO2001079438A3 (en
Inventor
Yumin Mao
Yi Xie
Original Assignee
Biowindow Gene Development Inc. Shanghai
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Biowindow Gene Development Inc. Shanghai filed Critical Biowindow Gene Development Inc. Shanghai
Priority to AU73782/01A priority Critical patent/AU7378201A/en
Publication of WO2001079438A2 publication Critical patent/WO2001079438A2/en
Publication of WO2001079438A3 publication Critical patent/WO2001079438A3/en

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/46Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
    • C07K14/47Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
    • C07K14/4701Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals not used
    • C07K14/4711Alzheimer's disease; Amyloid plaque core protein
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P3/00Drugs for disorders of the metabolism
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P37/00Drugs for immunological or allergic disorders

Definitions

  • the present invention belongs to the field of biotechnology. Specifically, the present invention describes a new polypeptide, a human precursor protein-binding protein 9, and a polynucleotide sequence encoding the polypeptide. The invention also relates to a preparation method and application of the polynucleotide and polypeptide. Background technique
  • Beta amyloid is composed of beta-amyloid peptide (AP).
  • AP is about 4kDa in size and is a soluble protein hydrolysate processed from ⁇ -amyloid protein precursor (APP).
  • APP beta-amyloid protein precursor
  • Studies have found that when APP-related AD-related mutations result in increased AP secretion, or APH APH. The ratio has changed.
  • Overexpression of APP or C-terminus of APP containing AP domains has a toxic effect on neurons.
  • APP is processed into mature proteins in the Golgi apparatus and transported to the cell surface. It is then secreted out of the cell or becomes an intrinsic protein immobilized on the cell membrane. APP plays a certain role in material transport. For example, excision of the YENPTY sequence of APP will affect the endocytosis of APP on the cell surface, and also allow APP to enter the intracellular pathway before reaching the cell surface, thereby disrupting the transport of intracellular materials.
  • APP The role of APP is related to several cytokines.
  • One of them is FE65 protein.
  • FE65 can be combined with the cytoplasmic end of APP.
  • FE65 is abundantly distributed in the mouse brain and intracellularly in the endoplasmic reticulum / Golgi apparatus.
  • FE65 can increase the amount of APP bound to the cell surface and also increase the secretion of APP and AP.
  • hFE65L human hFE65L protein.
  • the C-terminal portion of the protein can interact with the cytoplasmic portion of APP.
  • Analysis of its structure revealed that hFE65L contains several domains related to signal transmission and regulation, suggesting that it is related to this type of function.
  • hFE65L is homologous to murine FE65L.
  • the human amyloid precursor protein binding protein 9 protein plays an important role in regulating important functions of the body, such as cell division and embryonic development, and it is believed that a large number of proteins are involved in these regulatory processes, so more needs to be identified in the art
  • the human amyloid precursor protein binding protein 9 protein involved in these processes, especially the amino acid sequence of this protein is identified.
  • the separation of the new human amyloid precursor protein binding protein 9 protein encoding gene also provides a basis for research to determine the role of this protein in health and disease states. This protein may form the basis for the development of diagnostic and / or therapeutic drugs for diseases, so it is important to isolate its coding DNA. Disclosure of invention
  • Another object of the invention is to provide a polynucleotide encoding the polypeptide.
  • Another object of the present invention is to provide a recombinant vector containing a polynucleotide encoding a human amyloid precursor protein binding protein 9.
  • Another object of the present invention is to provide a method for producing human amyloid precursor protein binding protein 9.
  • Another object of the present invention is to provide an antibody against the polypeptide-human amyloid precursor protein-binding protein 9 of the present invention.
  • Another object of the present invention is to provide mimic compounds, antagonists, agonists, and inhibitors directed to the polypeptide of the present invention-human amyloid precursor protein-binding protein 9.
  • Another object of the present invention is to provide a method for diagnosing and treating diseases related to abnormalities of human amyloid precursor protein binding protein 9.
  • the present invention relates to an isolated polypeptide, which is of human origin, and includes: a polypeptide having an S EQ ID No. 2 amino acid sequence, or a conservative variant, biologically active fragment, or derivative thereof.
  • the polypeptide is a polypeptide having the amino acid sequence of SEQ ID NO: 2.
  • the invention also relates to an isolated polynucleotide comprising a nucleotide sequence or a variant thereof selected from the group consisting of:
  • polynucleotide complementary to the polynucleotide (a);
  • sequence of the polynucleotide is one selected from the group consisting of: (a) a sequence having positions 1 602-1 85 in SEQ ID NO: 1; and (b) having a sequence in SEQ ID NO: 1 Sequence of 1 -1 892 bits.
  • the invention further relates to a vector, in particular an expression vector, containing the polynucleotide of the invention; a host cell genetically engineered with the vector, including a transformed, transduced or transfected host cell; and a method comprising culturing said Host cell and method of preparing the polypeptide of the present invention by recovering the expression product.
  • a vector in particular an expression vector, containing the polynucleotide of the invention
  • a host cell genetically engineered with the vector including a transformed, transduced or transfected host cell
  • a method comprising culturing said Host cell and method of preparing the polypeptide of the present invention by recovering the expression product.
  • the invention also relates to an antibody capable of specifically binding to a polypeptide of the invention.
  • the invention also relates to a method for screening compounds that mimic, activate, antagonize or inhibit the activity of human amyloid precursor protein binding protein 9 protein, which comprises utilizing the polypeptide of the invention.
  • the invention also relates to compounds obtained by this method.
  • the invention also relates to a method for detecting a disease or disease susceptibility related to abnormal expression of human amyloid precursor protein binding protein 9 protein in vitro, which comprises detecting a mutation in the polypeptide or a sequence encoding a polynucleotide thereof in a biological sample, Alternatively, the amount or biological activity of a polypeptide of the invention in a biological sample is detected.
  • the present invention also relates to a pharmaceutical composition
  • a pharmaceutical composition comprising a polypeptide of the present invention or a mimetic thereof, an activator, an antagonist or an inhibitor, and a pharmaceutically acceptable carrier.
  • the present invention also relates to the use of the polypeptide and / or polynucleotide of the present invention for the preparation of a medicament for treating cancer, developmental disease or immune disease or other diseases caused by abnormal expression of human amyloid precursor protein binding protein 9.
  • Nucleic acid sequence refers to an oligonucleotide, a nucleotide or a polynucleotide and a fragment or part thereof, and may also refer to a genomic or synthetic DNA or RNA, they can be single-stranded or double-stranded, representing the sense or antisense strand.
  • amino acid sequence refers to an oligopeptide, peptide, polypeptide or protein sequence and fragments or portions thereof.
  • amino acid sequence in the present invention relates to the amino acid sequence of a naturally occurring protein molecule, such "polypeptide” or “protein” does not mean to limit the amino acid sequence to a complete natural amino acid related to the protein molecule .
  • a protein or polynucleotide “variant” refers to an amino acid sequence having one or more amino acids or nucleotide changes, or a polynucleotide sequence encoding it.
  • the changes may include deletions, insertions or substitutions of amino acids or nucleotides in the amino acid sequence or nucleotide sequence.
  • Variants may have "conservative" changes in which the substituted amino acid has a structural or chemical property similar to the original amino acid, such as replacing isoleucine with leucine.
  • Variants can also have non-conservative changes, such as replacing glycine with tryptophan.
  • “Deletion” refers to the deletion of one or more amino acids or nucleotides in an amino acid sequence or nucleotide sequence.
  • Insertion refers to an alteration in the amino acid sequence or nucleotide sequence that results in an increase in one or more amino acids or nucleotides compared to a naturally occurring molecule.
  • Replacement refers to the replacement of one or more amino acids or nucleotides with different amino acids or nucleotides.
  • Bioactivity refers to a protein that has the structure, regulation, or biochemical function of a natural molecule.
  • immunologically active refers to the ability of natural, recombinant or synthetic proteins and fragments thereof to induce a specific immune response and to bind specific antibodies in a suitable animal or cell.
  • An "agonist” refers to a molecule that, when combined with human amyloid precursor protein binding protein 9, causes a change in the protein to regulate the activity of the protein.
  • An agonist may include a protein, a nucleic acid, a carbohydrate, or any other molecule that can bind human starch precursor protein binding protein 9.
  • Antagonist refers to a molecule that can block or regulate the biological or immunological activity of human amyloid precursor protein binding protein 9 when bound to human amyloid precursor protein binding protein 9.
  • Antagonists and inhibitors may include proteins, nucleic acids, carbohydrates, or any other molecule that can bind human starch precursor protein binding protein 9.
  • Regular refers to a change in the function of human amyloid precursor protein binding protein 9, including an increase or decrease in protein activity, a change in binding characteristics, and any other biological properties and functions of human amyloid precursor protein binding protein 9. Or changes in immune properties.
  • substantially pure ' means essentially free of other proteins, lipids, sugars or other substances with which it is naturally associated.
  • Those skilled in the art can purify human starch precursor protein binding protein 9 using standard protein purification techniques 9
  • the substantially pure human amyloid precursor protein binding protein 9 can generate a single main band on a non-reducing polyacrylamide gel.
  • the purity of the human amyloid precursor protein binding protein 9 polypeptide can be analyzed by amino acid sequence.
  • Complementary refers to the natural binding of polynucleotides by base-pairing under conditions of acceptable salt concentration and temperature.
  • sequence C-T-G-A
  • complementary sequence G-A-C-T
  • the complementarity between two single-stranded molecules can be partial or complete.
  • the degree of complementarity between nucleic acid strands has a significant effect on the efficiency and strength of hybridization between nucleic acid strands.
  • “Homology” refers to the degree of complementarity and can be partially homologous or completely homologous.
  • Partial homology refers to a partially complementary sequence that at least partially inhibits hybridization of a fully complementary sequence to a target nucleic acid. Inhibition of this hybridization can be achieved by hybridization under conditions of reduced stringency (Sou t he rn blot or
  • Substantially homologous sequences or hybridization probes can compete and inhibit the binding of completely homologous sequences to the target sequence under conditions of reduced stringency. This does not imply a reduction in stringency Low conditions allow non-specific binding because conditions of reduced stringency require that the two sequences bind to each other as a specific or selective interaction.
  • Percent identity refers to the percentage of sequences that are identical or similar in the comparison of two or more amino acid or nucleic acid sequences. The percent identity can be determined electronically, such as by the MEGALIGN program (Lasergene software package, Leg STAR, Inc., Madison Wis.). The MEGALIGN program can compare two or more sequences according to different methods such as the Cluster method (Higgins, DG and PM Sharp (1988) Gene 73: 237-244). 0 The C Luster method groups each group by checking the distance between all pairs. The sequences are arranged in clusters. The clusters are then assigned in pairs or groups. The percent identity between two amino acid sequences such as sequence A and sequence B is calculated by the following formula: The number of matching residues between sequence A and sequence B
  • the number of residues in sequence A-the number of spacer residues in sequence A-the number of spacer residues in sequence B can also be determined by the Cluster method or by methods known in the art such as Jotun Hein. (1990) Methods in emzumology 183: 625-645).
  • Similarity refers to the degree of identical or conservative substitutions of amino acid residues at corresponding positions in the alignment of amino acid sequences.
  • Amino acids used for conservative substitutions for example, negatively charged amino acids may include aspartic acid and glutamic acid; positively charged amino acids may include lysine and arginine; having an uncharged head group is Similar hydrophilic amino acids may include leucine, isoleucine and valine; glycine and alanine; asparagine and glutamine; serine and threonine; phenylalanine and tyrosine.
  • Antisense refers to a nucleotide sequence that is complementary to a particular DNA or RNA sequence.
  • Antisense strand refers to a nucleic acid strand that is complementary to the “sense strand”.
  • Derivative refers to a chemical modification of HFP or a nucleic acid encoding it. Such a chemical modification may be the replacement of a hydrogen atom with an alkyl group, an acyl group or an amino group. Nucleic acid derivatives can encode polypeptides that retain the main biological characteristics of natural molecules.
  • Antibody refers to a complete antibody molecule and its fragments, such as Fa,? ( ⁇ ') 2 and? ⁇ It can specifically bind to the epitope of human amyloid precursor protein binding protein 9.
  • a “humanized antibody” refers to an antibody in which the amino acid sequence of a non-antigen binding region is replaced to become more similar to a human antibody, but still retains the original binding activity.
  • isolated refers to the removal of a substance from its original environment (for example, its natural environment if it occurs naturally).
  • a naturally-occurring polynucleotide or polypeptide exists in a living animal. It is not isolated, but the same polynucleotide or polypeptide is separated from some or all of the substances that coexist with it in the natural system.
  • Such a polynucleotide may be part of a certain vector, or such a polynucleotide or polypeptide may be part of a certain composition. Since the carrier or composition is not a component of its natural environment, they are still isolated.
  • isolated refers to the separation of a substance from its original environment (if it is a natural substance, the original environment is the natural environment).
  • polynucleotides and polypeptides in a natural state in a living cell are not isolated and purified, but the same polynucleotides or polypeptides are separated and purified if they are separated from other substances existing in the natural state. .
  • isolated human amyloid precursor protein binding protein 9 refers to human amyloid precursor protein binding protein 9 which is substantially free of other proteins, lipids, carbohydrates, or other substances with which it is naturally associated.
  • Those skilled in the art can purify human starch precursor protein binding protein 9 using standard protein purification techniques. Substantially pure polypeptides can produce a single main band on a non-reducing polyacrylamide gel. The purity of the human starch precursor protein-binding protein 9 polypeptide can be analyzed by amino acid sequence.
  • the present invention provides a new polypeptide, a human amyloid precursor protein binding protein 9, which is basically composed of
  • the polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide, or a synthetic polypeptide, and preferably a recombinant polypeptide.
  • the polypeptides of the present invention can be naturally purified products, or chemically synthesized products, or can be produced from prokaryotic or eukaryotic hosts (eg, bacteria, yeast, higher plants, insects, and mammalian cells) using recombinant techniques. Depending on the host used in the recombinant production protocol, the polypeptide of the invention may be glycosylated, or it may be non-glycosylated. Polypeptides of the invention may also include or exclude starting methionine residues.
  • the invention also includes fragments, derivatives, and analogs of human amyloid precursor protein-binding protein 9.
  • fragment refers to a polypeptide that substantially retains the same biological function or activity of the human amyloid precursor protein-binding protein 9 of the present invention.
  • a fragment, derivative or analog of the polypeptide of the present invention may be: (I) a kind in which one or more amino acid residues are substituted with conservative or non-conservative amino acid residues (preferably conservative amino acid residues), and the substitution
  • the amino acid may or may not be encoded by a genetic codon; or ( ⁇ ) such a type in which a group on one or more amino acid residues is substituted by another group to include a substituent; or (in) such One, wherein the mature polypeptide is fused to another compound (such as a compound that extends the half-life of the polypeptide, such as polyethylene glycol); or (IV) such a polypeptide sequence in which an additional amino acid sequence is fused into the mature polypeptide ( Such as the leader sequence or secreted sequence or the sequence used to purify this polypeptide or protease sequence)
  • an additional amino acid sequence is fused into the mature polypeptide
  • the present invention provides an isolated nucleic acid (polynucleotide), which basically consists of an amino acid encoding SEQ ID NO: 2 Polynucleotide composition of a polypeptide of the amino acid sequence.
  • the polynucleotide sequence of the present invention includes the nucleotide sequence of SEQ ID NO: 1.
  • the polynucleotide of the present invention is found from a cDNA library of human fetal brain tissue. It contains a polynucleotide sequence with a total length of 1892 bases and its open reading frame 1602-1853 encodes 83 amino acids.
  • this polypeptide has a similar expression profile with human amyloid precursor protein binding protein 13, and it can be inferred that the human amyloid precursor protein binding protein 9 is similar to human amyloid precursor protein binding protein 13. Functions.
  • the polynucleotide of the present invention may be in the form of DNA or RNA.
  • DNA forms include cDNA, genomic DNA, or synthetic DNA.
  • DNA can be single-stranded or double-stranded.
  • DNA can be coding or non-coding.
  • the coding region sequence encoding a mature polypeptide may be the same as the coding region sequence shown in SEQ ID NO: 1 or a degenerate variant.
  • a "degenerate variant" refers to a nucleic acid sequence that encodes a protein or polypeptide having SEQ ID NO: 2 but is different from the coding region sequence shown in SEQ ID NO: 1 in the present invention.
  • the polynucleotide encoding the mature polypeptide of SEQ ID NO: 2 includes: only the coding sequence of the mature polypeptide; the coding sequence of the mature polypeptide and various additional coding sequences; the coding sequence of the mature polypeptide (and optional additional coding sequences); Coding sequence.
  • polynucleotide encoding a polypeptide refers to a polynucleotide that includes the polypeptide and a polynucleotide that includes additional coding and / or non-coding sequences.
  • the invention also relates to variants of the polynucleotides described above, which encode polypeptides or fragments, analogs and derivatives of polypeptides having the same amino acid sequence as the invention.
  • This polynucleotide variant can be a naturally occurring allelic variant or a non-naturally occurring variant.
  • These nucleotide variants include substitution variants, deletion variants, and insertion variants.
  • an allelic variant is an alternative form of a polynucleotide that may be a substitution, deletion, or insertion of one or more nucleotides, but does not substantially change the function of the polypeptide it encodes .
  • the invention also relates to a polynucleotide that hybridizes to the sequence described above (having at least 50%, preferably 70% identity between the two sequences).
  • the present invention particularly relates to polynucleotides that can hybridize to the polynucleotides of the present invention under stringent conditions.
  • “strict conditions” means: (1) hybridization and elution at lower ionic strength and higher temperature, such as 0.2xSSC, 0.1% SDS, 60 ° C; or (2) hybridization When adding a denaturant, such as 503 ⁇ 4 (v / v) formamide, 0.1% calf serum / 0.1% Ficoll, 42 ° C, etc .; or (3) the identity between the two sequences is at least 95 % Or more, preferably 97% or more.
  • the polypeptide encoded by the hybridizable polynucleotide has the same biological function and activity as the mature polypeptide shown in SEQ ID NO: 2.
  • nucleic acid A contains at least 10 nucleotides in length, preferably at least 20-30 nucleotides, more preferably at least SO-SO nucleotides, and most preferably at least 100 nucleotides. Nucleic acid fragments are also Nucleic acid amplification techniques (such as PCR) can be used to identify and / or isolate polynucleotides encoding human amyloid precursor protein binding protein 9.
  • polypeptides and polynucleotides in the present invention are preferably provided in an isolated form and are more preferably purified to homogeneity.
  • the specific polynucleotide sequence encoding the human starch precursor protein-binding protein 9 of the present invention can be obtained by various methods.
  • polynucleotides are isolated using hybridization techniques well known in the art. These techniques include, but are not limited to: 1) hybridization of probes to genomic or cDNA libraries to detect homologous polynucleotide sequences, and 2) antibody screening of expression libraries to detect cloned polynucleosides with common structural characteristics Acid fragments.
  • the DNA fragment sequence of the present invention can also be obtained by the following methods: 1) isolating the double-stranded DNA sequence from the genomic DNA; 2) chemically synthesizing the DNA sequence to obtain the double-stranded DNA of the polypeptide.
  • genomic DNA isolation is the least commonly used. Direct chemical synthesis of DNA sequences is often the method of choice. The more commonly used method is the isolation of cDNA sequences.
  • the standard method for isolating the cDNA of interest is to isolate n from donor cells that overexpress the gene and perform reverse transcription to form a plasmid or phage cDNA library.
  • Various methods have been developed for mRNA extraction, and kits are also commercially available (Qiagene).
  • the construction of cDNA libraries is also a common method (Sambrook, et al., Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory. New York, 1989).
  • Commercially available cDNA libraries are also available, such as different cDNA libraries from Clontech. When combined with polymerase reaction technology, even very small expression products can be cloned.
  • genes of the present invention can be selected from these cDNA libraries by conventional methods. These methods include (but are not limited to): (DDNA-DNA or DNA-RNA hybridization; (2) the presence or absence of marker gene functions; (3) determination of the level of transcripts of human amyloid precursor protein binding protein 9; ( 4) Detecting the protein product of gene expression through immunological techniques or measuring biological activity. The above methods can be used alone or in combination.
  • the probe used for hybridization is homologous to any part of the polynucleotide of the present invention, and its length is at least 10 nucleotides, preferably at least 30 nucleotides, more preferably At least 50 nucleotides, preferably at least 100 nucleotides.
  • the length of the probe is usually within 2000 nucleotides, preferably within 1000 nucleotides.
  • the probe used here is usually a DNA sequence chemically synthesized based on the gene sequence information of the present invention.
  • the genes or fragments of the present invention can of course be used as probes.
  • DNA probes can be labeled with radioisotopes, luciferin, or enzymes (such as alkaline phosphatase).
  • the protein product of human amyloid precursor protein binding protein 9 gene expression can be detected by immunological techniques such as Western blotting, radioimmunoprecipitation, and enzyme-linked immunosorbent assay (ELISA).
  • immunological techniques such as Western blotting, radioimmunoprecipitation, and enzyme-linked immunosorbent assay (ELISA).
  • polynucleotide sequence of the gene of the present invention or various DNA fragments and the like obtained as described above can be determined by a conventional method such as dideoxy chain termination method (Sanger et al. PNAS, 1977, 74: 5463-5467). Such polynucleotide sequences can also be determined using commercial sequencing kits. In order to obtain the full-length cDNA sequence, the sequencing must be repeated. Sometimes it is necessary to determine the cDNA sequence of multiple clones in order to splice into a full-length cDNA sequence.
  • the present invention also relates to a vector comprising the polynucleotide of the present invention, and a host cell produced by genetic engineering using the vector of the present invention or directly using a human starch precursor protein binding protein 9 coding sequence, and the recombinant technology to produce the described Polypeptide method.
  • a polynucleotide sequence encoding a human starch precursor protein binding protein 9 may be inserted into a vector to constitute a recombinant vector containing the polynucleotide of the present invention.
  • vector refers to bacterial plasmids, phages, yeast plasmids, plant cell viruses, mammalian cell viruses such as adenoviruses, retroviruses, or other vectors well known in the art.
  • Vectors suitable for use in the present invention include, but are not limited to: T7 promoter-based expression vectors (Rosenberg, et al.
  • any plasmid and vector can be used to construct a recombinant expression vector.
  • An important feature of expression vectors is that they usually contain an origin of replication, a promoter, a marker gene, and translational regulatory elements.
  • the expression vector also includes a ribosome binding site and a transcription terminator for translation initiation. Insertion of enhancer sequences into the vector will enhance its transcription in higher eukaryotic cells. Enhancers are cis-acting factors for DNA expression, usually about 10 to 300 base pairs. To promoters to enhance gene transcription. Illustrative examples include SV40 enhancers from 100 to 270 base pairs on the late side of the origin of replication, polyoma enhancers on the late side of the origin of replication, and adenovirus enhancers.
  • the expression vector preferably contains one or more selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reduction, neomycin resistance, and green for eukaryotic cell culture.
  • selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reduction, neomycin resistance, and green for eukaryotic cell culture.
  • Fluorescent protein (GFP) or tetracycline or ampicillin resistance for E. coli.
  • a polynucleotide encoding a human starch precursor protein binding protein 9 or a recombinant vector containing the polynucleotide can be transformed or transduced into a host cell to form a genetically engineered host containing the polynucleotide or the recombinant vector.
  • the term "host cell” refers to a prokaryotic cell, such as a bacterial cell; or a lower eukaryotic cell, such as a yeast cell; or a higher eukaryotic cell, such as a mammalian cell. Representative examples are: E.
  • coli Streptomyces
  • bacterial cells such as Salmonella typhimurium
  • fungal cells such as yeast
  • plant cells such as fly S2 or Sf 9
  • animal cells such as CH0, COS, or Bowes s melanoma cells, etc. .
  • Transformation of a host cell with a DNA sequence described in the present invention or a recombinant vector containing the DNA sequence can be performed using conventional techniques well known to those skilled in the art.
  • the host is a prokaryote such as E. coli
  • competent cells capable of DNA uptake can be in the exponential growth phase were harvested, treated with (1 2 method used in the step are well known in the art. Alternatively, it is a M g C l 2.
  • transformation can also be performed by electroporation.
  • the host is a eukaryotic organism, the following transfection methods can be used: calcium phosphate co-precipitation method, or conventional mechanical methods such as microinjection, electroporation, and lipid Plastid packaging, etc.
  • the polynucleotide sequence of the present invention can be used to express or produce recombinant human amyloid precursor protein binding protein 9 (Scence, 1 984; 224: 1 431). Generally there are the following steps:
  • the medium used in the culture may be selected from various conventional mediums according to the host cells used. Culture is performed under conditions suitable for host cell growth. After the host cells have grown to an appropriate cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction), and the cells are cultured for a period of time.
  • a suitable method such as temperature conversion or chemical induction
  • the recombinant polypeptide may be coated in a cell, expressed on a cell membrane, or secreted into a cell. Extracellular.
  • recombinant proteins can be isolated and purified by various separation methods using their physical, chemical, and other properties. These methods are well known to those skilled in the art. These methods include, but are not limited to: conventional renaturation treatment, protein precipitant treatment (salting out method), centrifugation, osmotic disruption, ultrasonic treatment, ultracentrifugation, molecular sieve folding (gel filtration), adsorption chromatography, ions Exchange chromatography, high performance liquid chromatography (HPLC) and various other liquid chromatography techniques and combinations of these methods.
  • conventional renaturation treatment protein precipitant treatment (salting out method), centrifugation, osmotic disruption, ultrasonic treatment, ultracentrifugation, molecular sieve folding (gel filtration), adsorption chromatography, ions Exchange chromatography, high performance liquid chromatography (
  • FIG. 1 is a comparison diagram of gene chip expression profiles of human amyloid precursor protein-binding protein 9 and human amyloid precursor protein-binding protein 13 according to the present invention.
  • the upper graph is a graph of the expression profile of human starch precursor protein binding protein 9 and the lower graph is the graph of the expression profile of human starch precursor protein binding protein 13.
  • 1 indicates fetal kidney
  • 2 indicates fetal large intestine
  • 3 indicates fetal small intestine
  • 4 indicates fetal muscle
  • 5 indicates fetal brain
  • 6 indicates fetal bladder
  • 7 indicates non-starved L02
  • 8 indicates L02 +,
  • 11 indicates fetal liver
  • 12 means normal liver
  • 13 means thyroid
  • 14 means skin
  • 15 means fetal lung
  • 16 means lung
  • means lung cancer
  • 18 means fetal spleen
  • 19 means spleen
  • 20 means For the prostate, 21 is the fetal heart, 22 is the heart, 23 is the muscle, 24 is the testis, 25 is the fetal thymus, and 26 is the thymus.
  • Figure 2 shows the polyacrylamide gel electrophoresis (SDS-PAGE) of human amyloid precursor protein-binding protein 9 isolated.
  • 9kDa is the molecular weight of the protein.
  • the arrow indicates the isolated protein band.
  • the present invention is further described below with reference to specific embodiments. It should be understood that these examples are only used to illustrate the present invention and not to limit the scope of the present invention. In the following examples, the experimental methods without specific conditions are generally performed according to conventional conditions such as Sambrook et al., Molecular Cloning: The conditions described in the laboratory manual (New York: Cold Spring Harbor Laboratory Press, 1989), or according to the manufacturer Suggested conditions.
  • Total human fetal brain RNA was extracted by one-step method with guanidine isothiocyanate / phenol / chloroform.
  • Poly (A) mRNA was isolated from total RNA using Quik mRNA Isolation Kit (Qiegene). 2ug poly (A) mRNA is reverse transcribed to form cDNA.
  • the Smart cDNA cloning kit purchased from Clontech was used to insert the cDNA fragment into the multicloning site of pBSK (+) vector (Clontech) to transform DH5a. The bacteria formed a cDNA library.
  • Dye terminate cycle react ion sequencing kit Perkin-Elmer
  • ABI 377 automatic sequencer Perkin-Elmer
  • CDNA sequence The column was compared with the existing public DNA sequence database (Genebank), and the cDNA sequence of one of the clones 0135B04 was found to be new DNA.
  • a series of primers were synthesized to determine the inserted cDNA fragments of the clone in both directions.
  • the 0135B04 clone contained a full-length cDNA of 1892 bp (as shown in Seq ID NO: 1), and a 251 bp open reading frame (0RF) from 1602 bp to 1853 bp, encoding a new protein (such as Seq ID NO : Shown in 2).
  • This clone pBS-0135B04 and encoded the protein named human amyloid precursor protein binding protein 9.
  • Example 2 Cloning of a gene encoding human starch precursor protein binding protein 9 by RT-PCR
  • CDNA was synthesized using fetal brain total RNA as a template and oligo-dT as a primer for reverse transcription reaction. After purification using Qiagene's kit, the following primers were used for PCR amplification:
  • Primerl 5,-CTCTTCAACTAGTGAATGAAAGAA-3 '(SEQ ID NO: 3)
  • Primer2 5'- TATACAAAATCACCTTAATGGTTA- 3 '(SEQ ID NO: 4)
  • Primerl is a forward sequence starting at lbp of the 5th end of SEQ ID NO: 1;
  • Primer2 is the 3 'end reverse sequence in SEQ ID NO: 1.
  • RNA extraction in one step [Anal. Biochem 1987, 162, 156-159] 0
  • This method involves acid guanidinium thiocyanate-chloroform extraction. That is, the tissue is homogenized with 4M guanidine isothiocyanate-25mM sodium citrate, 0.2M sodium acetate (pH4.0), and 1 volume of phenol and 1/5 volume of chloroform-isoamyl alcohol (49: 1) are added. ), Mix and centrifuge. Aspirate the aqueous layer, add isopropanol (0.8 vol) and centrifuge the mixture to obtain RNA precipitate. The resulting RNA pellet was washed with 70% ethanol, dried and dissolved in water.
  • Primer3 5 -CCCCATATGATGAAGGTAGTTATTCCTGCCTGT-3 '(Seq ID No: 5)
  • Primer4 5'- CCCGAATTCTTATATAGACAGAAAATAGCTCCA- 3, (Seq ID No: 6)
  • the 5 'ends of these two primers contain Ndel and BamHI digestion sites, respectively, followed by the 5' end and
  • the Nde I and BamH I restriction sites correspond to the selective endonuclease sites on the expression vector plasmid pET-28 b (+) (Nova Gen, Cat. No. 69865.3).
  • the pBS-0135B04 plasmid containing the full-length target gene was used as a template for the PCR reaction.
  • the PCR reaction conditions are as follows: a total volume of 50 ⁇ l contains 10 pg of pBS- 0135B0 4 plasmid, primers Primer-3 and Primer-4, and 1 J is lOpmol, Advantage polymerase Mix (Clontech) 1 ⁇ 1. Cycle parameters: 94.
  • Ndel and BamHI were used to double digest the amplified product and plasmid pET-28 (+), respectively, and large fragments were recovered and ligated with T4 ligase.
  • the ligation product was transformed into the colibacillus DH5 CX by the calcium chloride method. After being cultured overnight on an LB plate containing kanamycin (final concentration 30 g / ml), positive clones were selected by colony PCR method and sequenced. A positive clone (pET-0135B04) with the correct sequence was selected, and the recombinant plasmid was transformed into E.
  • coli BL21 (DE3) plySs (product of Novagen) using the calcium chloride method.
  • the host strain BL21 (pET-0135B04) was at 37.
  • C. Cultivate to logarithmic growth phase add IPTG to a final concentration of 1 mmol / L, and continue to cultivate for 5 hours.
  • the bacteria were collected by centrifugation, and the supernatant was collected by centrifugation. The supernatant was collected by centrifugation.
  • the purified human starch precursor protein binding protein 9 was purified.
  • a titer plate coated with 15 g / ml bovine serum albumin peptide complex was used as EL I SA to determine the antibody titer in rabbit serum.
  • Total IgG was isolated from antibody-positive rabbit serum using protein A-Sepha ros e.
  • the peptide was bound to a cyanogen bromide-activated Sepha r os e4B column, and the anti-peptide antibody was separated from the total I gG by affinity chromatography.
  • the immunoprecipitation method proved that the purified antibody could specifically bind to human amyloid precursor protein binding protein 9.
  • Example 6 Application of the polynucleotide fragment of the present invention as a hybridization probe
  • Suitable oligonucleotide fragments selected from the polynucleotides of the present invention are used as hybridization probes in various aspects.
  • the probes can be used to hybridize to genomic or cDNA libraries of normal tissue or pathological tissue from different sources to It is determined whether it contains the polynucleotide sequence of the present invention and a homologous polynucleotide sequence is detected. Further, the probe can be used to detect the polynucleotide sequence of the present invention or its homologous polynucleotide sequence in normal tissue or pathology. Whether the expression in tissue cells is abnormal.
  • the purpose of this embodiment is to select a suitable oligonucleotide fragment from the polynucleotide SEQ ID NO: 1 of the present invention as a hybridization probe, and to identify whether some tissues contain the polynucleoside of the present invention by a filter hybridization method.
  • Filter hybridization methods include dot blotting, Southern blotting, Nor thern blotting, and copying methods, etc. They are all used to fix the polynucleotide sample to be tested on the filter and then hybridize using basically the same steps.
  • the sample-immobilized filter is first pre-hybridized with a probe-free hybridization buffer to saturate the non-specific binding site of the sample on the filter with the carrier and synthetic polymer.
  • the pre-hybridization solution is then replaced with a hybridization buffer containing labeled probes and incubated to hybridize the probes to the target nucleic acid.
  • the unhybridized probes are removed by a series of membrane washing steps. In this embodiment, higher-intensity washing conditions (such as lower salt concentration and higher temperature) are used to reduce the hybridization background and retain only strong specific signals.
  • the probes used in this embodiment include two types: the first type of probes are oligonucleotide fragments that are completely the same as or complementary to the polynucleotide SEQ ID NO: 1 of the present invention; the second type of probes are partially related to the present invention
  • the polynucleotide SEQ ID NO: 1 is the same or complementary oligonucleotide fragment.
  • the dot blot method is used to fix the sample on the filter membrane. Under the high-intensity washing conditions, the first type of probe and the sample have the strongest hybridization specificity and are retained.
  • oligonucleotide fragments from the polynucleotide SEQ ID NO: 1 of the present invention for use as hybridization probes should follow the following principles and several aspects to be considered: 1.
  • the preferred range of probe size is 18-50 nucleotides;
  • Those that meet the above conditions can be used as primary selection probes, and then further computer sequence analysis, including the primary selection probe and its source sequence region (ie, SEQ ID NO: 1) and other known genomic sequences and their complements The regions are compared for homology. If the homology with the non-target molecular region is greater than 85% or there are more than 15 consecutive bases, then the primary probe should not be used;
  • Probe 1 which belongs to the first type of probe, is completely homologous or complementary to the gene fragment of SEQ ID NO: 1 (41Nt):
  • Probe 2 (probe2), which belongs to the second type of probe, is equivalent to the replacement mutant sequence of the gene fragment of SEQ ID NO: 1 or its complementary fragment (41Nt):
  • PBS phosphate buffered saline
  • step 8-13 are only used when contamination must be removed, otherwise step 14 can be performed directly.
  • NC membranes nitrocellulose membranes
  • Two NC membranes are required for each probe for subsequent experiments.
  • the film is washed with high-strength conditions and strength conditions, respectively.
  • the 32 P-Probe (the second peak is free y - 32 P-dATP) is prepared.
  • the plastic bag corner cut, prepared probe was added, after the sealed bag, 42 ( 'C Los water shaking overnight.
  • probe 1 can be used to qualitatively and quantitatively analyze the presence and differential expression of the polynucleotide of the present invention in different tissues.
  • Gene microarrays or DNA microarrays are new technologies currently being developed by many national laboratories and large pharmaceutical companies. It refers to the orderly and high-density arrangement of a large number of target gene fragments on glass, Silicon and other carriers, and then use fluorescence detection and computer software to compare and analyze data to
  • the polynucleotide of the present invention can be used as target DNA for gene chip technology for high-throughput research of new gene functions; search for and screen new tissue-specific genes, especially new genes related to diseases such as tumors; diagnosis of diseases such as hereditary diseases .
  • the specific method steps have been reported in the literature. For example, see DeRisi, J. L., Lyer, V. & Brown, P.0.
  • ccDDNNAAs with a total length of 44 million polynucleotide sequences are listed as the target DDNNAA, which includes the Multi-polynucleotide. . They will be separately expanded and amplified through PPCCRR. After pure purification, the expansion and amplification products obtained will be adjusted to a concentration of 550000nngg // uull. Right and left, use a CCaarrtteessiiaann 77550000 spot sampler (purchased from CCaarrtteessiiaann Corporation of the United States) on the glass glass medium 2200 quality, between the point and the point The distance is 228800 ⁇ . .
  • Probes from the above two types of tissues were hybridized with the chip in a UniHyb TM Hybridization Solution (purchased from TeleChem) for 16 hours, washed with a washing solution (1 x SSC, 0.2% SDS) at room temperature, and then scanned with ScanArray 3000.
  • the scanner purchased from General Scanning Company, USA
  • the scanned image was analyzed and processed with Iniagene software (Biodicovery Company, USA) to calculate the Cy3 / Cy5 ratio of each point.
  • the above specific tissues are thymus, testis, muscle, spleen, lung, skin, thyroid, liver, PMA + Ecv304 cell line, PMA-Ecv304 cell line, non-starved L02 cell line, L02 cell line stimulated by arsenic for 1 hour, L02 cell line stimulated by arsenic for 6 hours prostate, heart, lung cancer, fetal bladder, fetal small intestine, fetal large intestine, fetal thymus, fetal muscle, fetal liver, fetal kidney, fetal spleen, fetal brain, Fetal lung and fetal heart.
  • polypeptide of the present invention and the antagonists, agonists and inhibitors of the polypeptide can be directly used in the treatment of diseases, for example, it can treat malignant tumors, adrenal deficiency, skin diseases, various inflammations, HIV infections and immune diseases.
  • ⁇ -amyloid precursor protein can be processed to form soluble amyloid ⁇ amyloid.
  • APP plays a certain role in the transport of proteins. For example, excision of the YENPTY sequence of AP will affect the endocytosis of APP on the cell surface, and also allow APP to enter the intracellular pathway before reaching the cell surface, thereby disrupting the transport of intracellular material.
  • APP-related AD mutations occur, AP secretion can increase, or the ratio of AP, ⁇ / AP ⁇ changes.
  • beta amyloid bodies in the brain is closely related to Alzheimer's disease (Alzheimer disease). and also It was found that the role of APP is related to several cytokines such as FE65 protein.
  • the expression profile of the polypeptide of the present invention is consistent with the expression profile of human ⁇ -amyloid precursor protein, and both have similar biological functions. It is mainly involved in cell swallowing and exocytosis in the body, and its abnormal expression is usually closely related to the occurrence of some related disorders of material metabolism, disorders of protein metabolism, and related tissue tumors and cancers, such as the Alzheimer's Moore's disease.
  • the abnormal expression of the human amyloid precursor protein binding protein 9 of the present invention will produce various diseases, especially Alzheimer's disease, various tumors, embryonic developmental disorders, growth disorders, inflammation, Immune diseases, including but not limited to:
  • Tumors of various tissues stomach cancer, liver cancer, lung cancer, esophageal cancer, breast cancer, leukemia, lymphoma, thyroid tumor, uterine fibroids, neuroblastoma, astrocytoma, ependymoma, glioblastoma, nerve Fibroma, colon cancer, melanoma, bladder cancer, uterine cancer, endometrial cancer, colon cancer, thymic tumor, nasopharyngeal cancer, laryngeal cancer, tracheal tumor, fibroid, fibrosarcoma, lipoma, liposarcoma
  • Fetal developmental disorders congenital abortion, cleft palate, limb loss, limb differentiation disorder, atrial septal defect, neural tube defect, congenital hydrocephalus, congenital glaucoma or cataract, congenital deafness
  • Growth and development disorders mental retardation, brain development disorders, skin, fat, and muscular dysplasia, bone and joint dysplasia, various metabolic defects, stunting, dwarfism, Cushing's syndrome Sexual retardation
  • Inflammation chronic active hepatitis, sarcoidosis, polymyositis, chronic rhinitis, chronic gastritis, cerebrospinal multiple sclerosis, glomerulonephritis, myocarditis, cardiomyopathy, atherosclerosis, gastric ulcer, cervicitis, Various infectious inflammations
  • Immune diseases Systemic lupus erythematosus, rheumatoid arthritis, bronchial asthma, urticaria, specific dermatitis, post-infection myocarditis, scleroderma, myasthenia gravis, Guillain-Barre syndrome, common variable immunodeficiency disease , Primary B lymphocyte immunodeficiency disease, Acquired immunodeficiency syndrome
  • Abnormal expression of the human amyloid precursor protein-binding protein 9 of the present invention will also produce certain hereditary, hematological diseases, and the like.
  • the polypeptide of the present invention and the antagonists, agonists and inhibitors of the polypeptide can be directly used in the treatment of diseases, for example, it can treat various diseases, especially Alzheimer's disease, various tumors, embryonic development disorders, growth and development. Obstructive diseases, inflammation, immune diseases, certain hereditary, blood diseases, etc.
  • the invention also provides methods for screening compounds to identify agents that increase (agonist) or suppress (antagonist) human starch precursor protein binding protein 9.
  • Agonists enhance biological functions such as human amyloid precursor protein binding protein 9 to stimulate cell proliferation, and antagonists prevent and treat disorders related to excessive cell proliferation, such as various cancers.
  • mammalian cells or human starch precursor protein-binding proteins can be bound in the presence of drugs
  • Membrane formulations of White 9 were cultured with labeled human amyloid precursor protein binding protein 9. The ability of the drug to increase or block this interaction is then determined.
  • Antagonists of human amyloid precursor protein binding protein 9 include screened antibodies, compounds, receptor deletions, and the like. Antagonists of human amyloid precursor protein binding protein 9 can bind to human amyloid precursor protein binding protein 9 and eliminate its function, or inhibit the production of the polypeptide, or bind to the active site of the polypeptide to make the polypeptide Cannot perform biological functions.
  • human amyloid precursor protein-binding protein 9 may be added to a bioanalytical assay by measuring the effect of the compound on the interaction between human amyloid precursor protein-binding protein 9 and its receptor. Determine if the compound is an antagonist.
  • Receptor deletions and analogs that act as antagonists can be screened in the same manner as described above for screening compounds.
  • Polypeptide molecules capable of binding to human amyloid precursor protein binding protein 9 can be obtained by screening a random peptide library composed of various possible combinations of amino acids bound to a solid phase. During screening, 9 molecules of human amyloid precursor protein binding protein should generally be labeled.
  • the present invention provides a method for producing an antibody using a polypeptide, a fragment, a derivative, an analog thereof, or a cell thereof as an antigen.
  • These antibodies can be polyclonal or monoclonal antibodies.
  • the present invention also provides antibodies directed against human amyloid precursor protein binding protein 9 epitopes. These antibodies include (but are not limited to): polyclonal antibodies, monoclonal antibodies, chimeric antibodies, single-chain antibodies, Fab fragments, and fragments from Fab expression libraries.
  • Polyclonal antibodies can be produced by injecting human amyloid precursor protein binding protein 9 directly into immunized animals (such as rabbits, mice, rats, etc.).
  • immunized animals such as rabbits, mice, rats, etc.
  • a variety of adjuvants can be used to enhance the immune response, including but not limited to 'S adjuvant and so on.
  • Techniques for preparing monoclonal antibodies to human amyloid precursor protein binding protein 9 include, but are not limited to, hybridoma technology (Kohler and Milstein. Nature, 1975, 256: 495-497), triple tumor technology, human B-cell hybridoma Technology, EBV-hybridoma technology, etc.
  • Chimeric antibodies combining human constant regions and non-human variable regions can be produced using existing techniques (Morrison et al, PNAS, 1985, 81: 6851). 0
  • Existing techniques for producing single-chain antibodies can also be used to produce single chain antibodies against human amyloid precursor protein binding protein 9.
  • Antibodies against human amyloid precursor protein binding protein 9 can be used in immunohistochemical techniques to detect human amyloid precursor protein binding protein 9 in biopsy specimens.
  • Monoclonal antibodies that bind to human amyloid precursor protein binding protein 9 can also be labeled with radioisotopes and injected into the body to track their location and distribution. This radiolabeled antibody can be used as a non-invasive diagnostic method to locate tumor cells and determine whether there is metastasis.
  • Antibodies can also be used to design immunotoxins that target a particular part of the body.
  • human amyloid precursor protein binding protein 9 high affinity monoclonal antibodies can interact with bacterial or plant toxins (such as diphtheria toxin, ricin, Ormosine, etc.).
  • a common method is to attack the amino group of an antibody with a thiol cross-linking agent such as SPDP and bind the toxin to the antibody through the exchange of disulfide bonds.
  • This hybrid antibody can be used to kill human starch precursor protein binding protein 9 Positive cells.
  • the antibodies of the present invention can be used to treat or prevent diseases related to human amyloid precursor protein binding protein 9.
  • Administration of an appropriate dose of antibody can stimulate or block the production or activity of human amyloid precursor protein binding protein 9.
  • the invention also relates to a diagnostic test method for quantitative and localized detection of human amyloid precursor protein binding protein 9 levels.
  • tests are well known in the art and include FI SH assays and radioimmunoassays.
  • the level of human amyloid precursor protein binding protein 9 detected in the test can be used to explain the importance of human amyloid precursor protein binding protein 9 in various diseases and to diagnose human amyloid precursor protein binding protein 9 A working disease.
  • polypeptide of the present invention can also be used for peptide mapping analysis.
  • the polypeptide can be specifically cleaved by physical, chemical or enzymatic analysis, and subjected to one-dimensional or two-dimensional or three-dimensional gel electrophoresis analysis, and more preferably mass spectrometry.
  • Polynucleotides encoding human amyloid precursor protein binding protein 9 can also be used for a variety of therapeutic purposes. Gene therapy technology can be used to treat abnormal cell proliferation, development or metabolism caused by the non-expression or abnormal / inactive expression of human amyloid precursor protein binding protein 9.
  • Recombinant gene therapy vectors (such as viral vectors) can be designed to express variant human amyloid precursor protein binding protein 9 to inhibit endogenous human amyloid precursor protein binding protein 9 activity.
  • a variant human amyloid precursor protein-binding protein 9 may be a shortened human amyloid precursor protein-binding protein 9 that lacks a signaling domain. Although it can bind to downstream substrates, it lacks signal transduction. active.
  • the recombinant gene therapy vector can be used for treating diseases caused by abnormal expression or activity of human amyloid precursor protein binding protein 9.
  • Virus-derived expression vectors such as retroviruses, adenoviruses, adenovirus-associated viruses, herpes simplex virus, parvoviruses, and the like can be used to transfer polynucleotides encoding human starch precursor protein binding protein 9 into cells.
  • a method for constructing a recombinant viral vector carrying a polynucleotide encoding a human amyloid precursor protein binding protein 9 can be found in the existing literature (Sambrook, et al.).
  • a recombinant polynucleotide encoding human amyloid precursor protein binding protein 9 can be packaged into liposomes and transferred into cells.
  • Methods for introducing a polynucleotide into a tissue or cell include: directly injecting the polynucleotide into a tissue in vivo; or introducing the polynucleotide into a cell in vitro through a vector (such as a virus, phage, or plasmid), and then transplanting the cell Into the body and so on.
  • a vector such as a virus, phage, or plasmid
  • Oligonucleotides including antisense RNA and DNA
  • ribozymes that inhibit human amyloid precursor protein binding protein 9 mRNA are also within the scope of the present invention.
  • a ribozyme is an enzyme-like RNA molecule that specifically decomposes specific RNA. Its mechanism of action is that the ribozyme molecule specifically hybridizes with a complementary target RNA for endonucleation.
  • Anti The sensed RNA, DNA and ribozyme can be obtained by any existing RNA or DNA synthesis technology. For example, the technology for the synthesis of oligonucleotides by solid-phase phosphoramidite chemical synthesis has been widely used.
  • Antisense RNA molecules can be obtained by in vitro or in vivo transcription of a DNA sequence encoding the RNA. This DNA sequence has been integrated downstream of the RNA polymerase promoter of the vector. In order to increase the stability of a nucleic acid molecule, it can be modified in a variety of ways, such as increasing the sequence length on both sides, and the ribonucleoside linkages should use phosphate thioester or peptide bonds instead of phosphodiester bonds.
  • the polynucleotide encoding human amyloid precursor protein binding protein 9 can be used for diagnosis of diseases related to human amyloid precursor protein binding protein 9.
  • the polynucleotide encoding human amyloid precursor protein-binding protein 9 can be used to detect the expression of human amyloid precursor protein-binding protein 9 or abnormal expression of human amyloid precursor protein-binding protein 9 in a disease state.
  • the DNA sequence encoding human amyloid precursor protein binding protein 9 can be used to hybridize biopsy specimens to determine the expression status of human amyloid precursor protein binding protein 9.
  • Hybridization techniques include Souternrn blotting, Northenrn blotting, in situ hybridization, and the like. These techniques and methods are publicly available and mature, and related kits are commercially available.
  • polynucleotides of the present invention can be used as probes to be fixed on a microarray (Mic roaray) or a DNA chip (also known as a "gene chip") for analyzing differential expression analysis of genes in tissues And genetic diagnosis.
  • a microarray Mo roaray
  • DNA chip also known as a "gene chip”
  • Human amyloid precursor protein binding protein 9 specific primers for RNA-polymerase chain reaction (RT-PCR) in vitro amplification can also detect the human amyloid precursor protein binding protein 9 transcription products.
  • Detection of mutations in the human amyloid precursor protein binding protein 9 gene can also be used to diagnose human amyloid precursor protein binding protein 9-related diseases.
  • Human amyloid precursor protein binding protein 9 mutations include point mutations, translocations, deletions, recombinations, and any other abnormalities compared to the normal wild-type human amyloid precursor protein binding protein 9 DNA sequence. Mutations can be detected using existing techniques such as Southern blotting, DNA sequence analysis, PCR and in situ hybridization. In addition, mutations may affect protein expression. Therefore, the use of Northern blotting and Wetternrn blotting can indirectly determine whether a gene is mutated.
  • the sequences of the invention are also valuable for chromosome identification.
  • the sequence specifically targets a specific position on a human chromosome and can hybridize to it.
  • specific sites for each gene on the chromosome need to be identified.
  • only a few chromosome markers based on actual sequence data are available for marking chromosome positions.
  • an important first step is to locate these DNA sequences on a chromosome.
  • PCR primers (preferably 1 to 35 bp) are prepared based on cDNA, and the sequences can be located on chromosomes. These primers were then used for PCR screening of somatic hybrid cells containing individual human chromosomes. Only those heterozygous cells containing the human gene corresponding to the primer will produce amplified fragments.
  • PCR localization of somatic hybrid cells is a quick way to localize DNA to specific chromosomes.
  • oligonucleotide primers of the present invention by a similar method, a set of fragments from a specific chromosome can be utilized Or a large number of genomic clones to achieve sublocalization.
  • Other similar strategies that can be used for chromosomal localization include in situ hybridization, chromosome pre-screening with labeled flow sorting, and hybrid pre-selection to construct chromosome-specific cDNA libraries.
  • Fluorescent in situ hybridization of cDNA clones with metaphase chromosomes allows precise chromosomal localization in one step.
  • FISH Fluorescent in situ hybridization
  • the physical location of the sequence on the chromosome can be correlated with the genetic map data. This data can be found, for example, in V. Mckusick, Mendelian Inheritance in Man (available online with Johns Hopkins University Welch Medical Library). Linkage analysis can then be used to determine the relationship between genes and diseases that have been mapped to chromosomal regions.
  • the difference in cDNA or genomic sequence between the affected and unaffected individuals needs to be determined. If a mutation is observed in some or all diseased individuals and the mutation is not observed in any normal individuals, the mutation may be the cause of the disease. Comparing affected and unaffected individuals usually involves first looking for structural changes in chromosomes, such as deletions or translocations that are visible at the chromosomal level or detectable with cDNA sequence-based PCR. According to the resolution capabilities of current physical mapping and gene mapping technology, the cDNA accurately mapped to the chromosomal region associated with the disease can be one of 50 to 500 potentially pathogenic genes (assuming 1 megabase mapping resolution Capacity and each 20kb corresponds to a gene).
  • the polypeptides, polynucleotides and mimetics, agonists, antagonists and inhibitors of the present invention can be used in combination with a suitable pharmaceutical carrier.
  • suitable pharmaceutical carrier can be water, glucose, ethanol, salts, buffers, glycerol, and combinations thereof.
  • the composition comprises a safe and effective amount of the polypeptide or antagonist, and carriers and excipients that do not affect the effect of the drug. These compositions can be used as drugs for the treatment of diseases.
  • the present invention also provides a kit or kit containing one or more containers containing one or more ingredients of the pharmaceutical composition of the present invention.
  • a kit or kit containing one or more containers containing one or more ingredients of the pharmaceutical composition of the present invention.
  • these containers there may be instructional instructions given by government agencies that manufacture, use, or sell pharmaceuticals or biological products, which reminders permit their administration on the human body by government agencies that manufacture, use, or sell them.
  • the polypeptide of the present invention can be used in combination with other therapeutic compounds.
  • the pharmaceutical composition can be administered in a convenient manner, such as by a topical, intravenous, intraperitoneal, intramuscular, subcutaneous, intranasal or intradermal route of administration.
  • Human amyloid precursor protein binding protein 9 is administered in an amount effective to treat and / or prevent specific indications.
  • the amount and range of human amyloid precursor protein binding protein 9 administered to a patient will depend on many factors, such as the mode of administration, the health conditions of the person to be treated, and the judgment of the diagnostician.

Landscapes

  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Medicinal Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • General Chemical & Material Sciences (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Veterinary Medicine (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Animal Behavior & Ethology (AREA)
  • Public Health (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biomedical Technology (AREA)
  • Molecular Biology (AREA)
  • Neurology (AREA)
  • Toxicology (AREA)
  • Zoology (AREA)
  • Gastroenterology & Hepatology (AREA)
  • Biochemistry (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • Immunology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Diabetes (AREA)
  • Hematology (AREA)
  • Obesity (AREA)
  • Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Peptides Or Proteins (AREA)
  • Preparation Of Compounds By Using Micro-Organisms (AREA)

Abstract

The present invention disclose a new polypeptide- human amyloid precursor protein-binding protein 9, the polynucleotide encoding it and a method producing the polypeptide by DNA recombinant technology. The present invention further disclose a method treating various disorders, e.g., Alzeihmer disease, malignant neoplasm, hemopathy, development disorders, HIV infection and immunological disease and various inflammation etc. The present invention also disclose an antagonist of the polypeptide and its therapeutic action. The present invention further disclose the use of the polynucleotide encoding the new human amyloid precursor protein-binding protein 9.

Description

一种新的多肽一一人淀粉类前体蛋白结合蛋白 9和编码这种多肽的多核苷睃 技术领域 '  A new polypeptide-human amyloid precursor protein binding protein 9 and a polynucleoside 编码 encoding the polypeptide Technical Field ''
本发明属于生物技术领域, 具体地说, 本发明描述了一种新的多肽一一人淀 粉类前体蛋白结合蛋白 9, 以及编码此多肽的多核苷酸序列。 本发明还涉及此多 核苷酸和多肽的制备方法和应用。 背景技术  The present invention belongs to the field of biotechnology. Specifically, the present invention describes a new polypeptide, a human precursor protein-binding protein 9, and a polynucleotide sequence encoding the polypeptide. The invention also relates to a preparation method and application of the polynucleotide and polypeptide. Background technique
阿尔兹海默氏症 (Alzheimer disease ) 的特点是神经元数目减少, 并且在脑 内的 β 淀粉类小体增多。 β 淀粉类小体是由 β 淀粉类小体肽(beta- amyloid peptide, AP)构成的。 AP 大小约 4kDa, 是由 β -淀粉类前体蛋白 β - amyloid protein precursor (APP)加工而成的可溶性蛋白水解产物。 研究发现, 当 APP 发生 AD相关的突变时, 会导致 AP 分泌的增加, 或者 APH APH。的比值发生变 化。 APP 的超表达或者是包含 AP 结构域的 APP 的 C 末端的超表达对神经元有毒 害作用。  Alzheimer's disease is characterized by a reduction in the number of neurons and an increase in beta amyloid bodies in the brain. Beta amyloid is composed of beta-amyloid peptide (AP). AP is about 4kDa in size and is a soluble protein hydrolysate processed from β-amyloid protein precursor (APP). Studies have found that when APP-related AD-related mutations result in increased AP secretion, or APH APH. The ratio has changed. Overexpression of APP or C-terminus of APP containing AP domains has a toxic effect on neurons.
APP 在高尔基体中加工为成熟的蛋白质后运输到细胞表面。 之后或者被分泌 出细胞外, 或者成为内在蛋白固定在细胞膜上。 APP起到一定的物质转运的作用。 例如, 将 APP 的 YENPTY序列切除就会影响细胞表面的 APP 的内吞作用, 还会使 APP 在没有到达细胞表面之前就进入细胞内途径, 从而打乱了细胞内物质的运 输。  APP is processed into mature proteins in the Golgi apparatus and transported to the cell surface. It is then secreted out of the cell or becomes an intrinsic protein immobilized on the cell membrane. APP plays a certain role in material transport. For example, excision of the YENPTY sequence of APP will affect the endocytosis of APP on the cell surface, and also allow APP to enter the intracellular pathway before reaching the cell surface, thereby disrupting the transport of intracellular materials.
APP的作用与几种细胞因子有关。 其中一种是 FE65蛋白。 FE65 可以与 APP的 胞质端相结合。 FE65 在鼠脑中大量分布, 在细胞内分布在内质网 /高尔基体中。 FE65可以增高结合到细胞表面的 APP数量, 还可以提高 APP和 AP的分泌量。 【J Biol Chem, Vol. 274, Issue 12, 7952-7957, March 19, 1999]  The role of APP is related to several cytokines. One of them is FE65 protein. FE65 can be combined with the cytoplasmic end of APP. FE65 is abundantly distributed in the mouse brain and intracellularly in the endoplasmic reticulum / Golgi apparatus. FE65 can increase the amount of APP bound to the cell surface and also increase the secretion of APP and AP. [J Biol Chem, Vol. 274, Issue 12, 7952-7957, March 19, 1999]
在人中发现了几种 APP 的作用因子, 其中一种为人 hFE65L蛋白。 该蛋白的 C 端部分可以与 APP 的胞质部分相互作用。 对其结构的分析发现 hFE65L 包含几个 与信号传递和调节相关的结构域,暗示其与这类功能有关。并且 hFE65L与鼠 FE65L 同源。 [Proc Natl Acad Sci U S A 1996 Oct 1; 93 (20): 10832-7 ]  Several APP-acting factors have been found in humans, one of which is human hFE65L protein. The C-terminal portion of the protein can interact with the cytoplasmic portion of APP. Analysis of its structure revealed that hFE65L contains several domains related to signal transmission and regulation, suggesting that it is related to this type of function. And hFE65L is homologous to murine FE65L. [Proc Natl Acad Sci U S A 1996 Oct 1; 93 (20): 10832-7]
通过基因芯片的分析发现, 在胸腺、 睾丸、 肌肉、 脾脏、 肺、 皮肤、 甲状腺、 肝、 PMA+的 Ecv304 细胞株、 PMA -的 Ecv304 细胞株、 未饥饿的 L02 细胞株、 砷 刺激 1 小时的 L02细胞株、 砷刺激 6小时的 L02细胞株前列腺、 心、 肺癌、 胎膀 胱、 胎小肠、 胎大肠、 胎胸腺、 胎肌、 胎肝、 胎肾、 胎脾、 胎脑、 胎肺以及胎心 中, 本发明的多肽的表达谱与人淀粉类前体蛋白结合蛋白 1 3的表达谱非常近似, 因此二者功能也可能类似。 本发明被命名为人淀粉类前体蛋白结合蛋白 9。 Gene chip analysis revealed that in the thymus, testis, muscle, spleen, lung, skin, thyroid, liver, PMA + Ecv304 cell line, PMA-Ecv304 cell line, non-starved L02 cell line, arsenic-stimulated L02 L02 cell line stimulated by arsenic for 6 hours prostate, heart, lung cancer, fetal bladder, fetal small intestine, fetal large intestine, fetal thymus, fetal muscle, fetal liver, fetal kidney, fetal spleen, fetal brain, fetal lung and fetal heart In the present invention, the expression profile of the polypeptide of the present invention is very similar to the expression profile of human amyloid precursor protein binding protein 1 3, so the functions of the two may also be similar. The invention is named as human amyloid precursor protein binding protein 9.
由于如上所述人淀粉类前体蛋白结合蛋白 9 蛋白在调节细胞分裂和胚胎发育 等机体重要功能中起重要作用, 而且相信这些调节过程中涉及大量的蛋白, 因而 本领域中一直需要鉴定更多参与这些过程的人淀粉类前体蛋白结合蛋白 9蛋白, 特别是鉴定这种蛋白的氨基酸序列。 新人淀粉类前体蛋白结合蛋白 9蛋白编码基 因的分离也为研究确定该蛋白在健康和疾病状态下的作用提供了基础。 这种蛋白 可能构成开发疾 1 病诊断和 /或治疗药的基础, 因此分离其编码 DNA 是非常重要 的。 发明的公开  As mentioned above, the human amyloid precursor protein binding protein 9 protein plays an important role in regulating important functions of the body, such as cell division and embryonic development, and it is believed that a large number of proteins are involved in these regulatory processes, so more needs to be identified in the art The human amyloid precursor protein binding protein 9 protein involved in these processes, especially the amino acid sequence of this protein is identified. The separation of the new human amyloid precursor protein binding protein 9 protein encoding gene also provides a basis for research to determine the role of this protein in health and disease states. This protein may form the basis for the development of diagnostic and / or therapeutic drugs for diseases, so it is important to isolate its coding DNA. Disclosure of invention
本发明的一个目的是提供分离的新的多肽一一人淀粉类前体蛋白结合蛋白 9 以及其片段、 类似物和衍生物。  It is an object of the present invention to provide isolated novel polypeptides-human amyloid precursor protein binding protein 9 and fragments, analogs and derivatives thereof.
本发明的另一个目的是提供编码该多肽的多核苷酸。  Another object of the invention is to provide a polynucleotide encoding the polypeptide.
本发明的另一个目的是提供含有编码人淀粉类前体蛋白结合蛋白 9 的多核苷 酸的重组载体。  Another object of the present invention is to provide a recombinant vector containing a polynucleotide encoding a human amyloid precursor protein binding protein 9.
本发明的另一个目的是提供含有编码人淀粉类前体蛋白结合蛋白 9 的多核苷 酸的基因工程化宿主细胞。  It is another object of the present invention to provide a genetically engineered host cell containing a polynucleotide encoding a human amyloid precursor protein binding protein 9.
本发明的另一个目的是提供生产人淀粉类前体蛋白结合蛋白 9的方法。  Another object of the present invention is to provide a method for producing human amyloid precursor protein binding protein 9.
本发明的另一个目的是提供针对本发明的多肽一一人淀粉类前体蛋白结合蛋 白 9的抗体。  Another object of the present invention is to provide an antibody against the polypeptide-human amyloid precursor protein-binding protein 9 of the present invention.
本发明的另一个目的是提供了针对本发明多肽一一人淀粉类前体蛋白结合蛋 白 9的模拟化合物、 拮抗剂、 激动剂、 抑制剂。  Another object of the present invention is to provide mimic compounds, antagonists, agonists, and inhibitors directed to the polypeptide of the present invention-human amyloid precursor protein-binding protein 9.
本发明的另一个目的是提供诊断治疗与人淀粉类前体蛋白结合蛋白 9 异常相 关的疾病的方法。  Another object of the present invention is to provide a method for diagnosing and treating diseases related to abnormalities of human amyloid precursor protein binding protein 9.
本发明涉及一种分离的多肽, 该多肽是人源的, 它包含: 具有 S EQ I D No. 2 氨基酸序列的多肽、 或其保守性变体、 生物活性片段或衍生物。 较佳地, 该多肽 是具有 SEQ I D NO: 2氨基酸序列的多肽。  The present invention relates to an isolated polypeptide, which is of human origin, and includes: a polypeptide having an S EQ ID No. 2 amino acid sequence, or a conservative variant, biologically active fragment, or derivative thereof. Preferably, the polypeptide is a polypeptide having the amino acid sequence of SEQ ID NO: 2.
本发明还涉及一种分离的多核苷酸, 它包含选自下组的一种核苷酸序列或 其变体:  The invention also relates to an isolated polynucleotide comprising a nucleotide sequence or a variant thereof selected from the group consisting of:
(a)编码具有 SEQ I D No. 2氨基酸序列的多肽的多核苷酸;  (a) a polynucleotide encoding a polypeptide having the amino acid sequence of SEQ ID D. 2;
(b)与多核苷酸(a )互补的多核苷酸; (c)与(a)或(b)的多核苷酸序列具有至少 7 0%相同性的多核苷酸。 更佳地, 该多核苷酸的序列是选自下组的一种: (a)具有 SEQ I D NO: 1 中 1 602-1 85 3位的序列; 和(b)具有 SEQ I D NO: 1 中 1 -1 892位的序列。 (b) a polynucleotide complementary to the polynucleotide (a); (c) A polynucleotide having at least 70% identity to a polynucleotide sequence of (a) or (b). More preferably, the sequence of the polynucleotide is one selected from the group consisting of: (a) a sequence having positions 1 602-1 85 in SEQ ID NO: 1; and (b) having a sequence in SEQ ID NO: 1 Sequence of 1 -1 892 bits.
本发明另外涉及一种含有本发明多核苷酸的载体, 特别是表达载体; 一种 用该载体遗传工程化的宿主细胞, 包括转化、 转导或转染的宿主细胞; 一种包括 培养所述宿主细胞和回收表达产物的制备本发明多肽的方法。  The invention further relates to a vector, in particular an expression vector, containing the polynucleotide of the invention; a host cell genetically engineered with the vector, including a transformed, transduced or transfected host cell; and a method comprising culturing said Host cell and method of preparing the polypeptide of the present invention by recovering the expression product.
本发明还涉及一种能与本发明多肽特异性结合的抗体。  The invention also relates to an antibody capable of specifically binding to a polypeptide of the invention.
本发明还涉及一种筛选的模拟、 激活、 拮抗或抑制人淀粉类前体蛋白结合蛋 白 9蛋白活性的化合物的方法, 其包括利用本发明的多肽。 本发明还涉及用该方 法获得的化合物。  The invention also relates to a method for screening compounds that mimic, activate, antagonize or inhibit the activity of human amyloid precursor protein binding protein 9 protein, which comprises utilizing the polypeptide of the invention. The invention also relates to compounds obtained by this method.
本发明还涉及一种体外检测与人淀粉类前体蛋白结合蛋白 9 蛋白异常表达相 关的疾病或疾病易感性的方法, 包括检测生物样品中所述多肽或其编码多核苷酸序 列中的突变, 或者检测生物样品中本发明多肽的量或生物活性。  The invention also relates to a method for detecting a disease or disease susceptibility related to abnormal expression of human amyloid precursor protein binding protein 9 protein in vitro, which comprises detecting a mutation in the polypeptide or a sequence encoding a polynucleotide thereof in a biological sample, Alternatively, the amount or biological activity of a polypeptide of the invention in a biological sample is detected.
本发明也涉及一种药物组合物, 它含有本发明多肽或其模拟物、 激活剂、 拮抗 剂或抑制剂以及药学上可接受的载体。  The present invention also relates to a pharmaceutical composition comprising a polypeptide of the present invention or a mimetic thereof, an activator, an antagonist or an inhibitor, and a pharmaceutically acceptable carrier.
本发明还涉及本发明的多肽和 /或多核苷酸在制备用于治疗癌症、 发育性疾 病或免疫性疾病或其它由于人淀粉类前体蛋白结合蛋白 9 表达异常所引起疾病的 药物的用途。  The present invention also relates to the use of the polypeptide and / or polynucleotide of the present invention for the preparation of a medicament for treating cancer, developmental disease or immune disease or other diseases caused by abnormal expression of human amyloid precursor protein binding protein 9.
本发明的其它方面由于本文的技术的公开, 对本领域的技术人员而言是显而易 见的。 本说明书和权利要求书中使用的下列术语除非特别说明具有如下的含义: "核酸序列" 是指寡核苷酸、 核苷酸或多核苷酸及其片段或部分, 也可以指 基因组或合成的 DNA或 RNA, 它们可以是单链或双链的, 代表有义链或反义链。 类 似地, 术语 "氨基酸序列" 是指寡肽、 肽、 多肽或蛋白质序列及其片段或部分。 当本发明中的 "氨基酸序列" 涉及一种天然存在的蛋白质分子的氨基酸序列时, 这种 "多肽" 或 "蛋白质" 不意味着将氨基酸序列限制为与所述蛋白质分子相关 的完整的天然氨基酸。  Other aspects of the invention will be apparent to those skilled in the art from the disclosure of the techniques herein. The following terms used in this specification and claims have the following meanings unless specifically stated: "Nucleic acid sequence" refers to an oligonucleotide, a nucleotide or a polynucleotide and a fragment or part thereof, and may also refer to a genomic or synthetic DNA or RNA, they can be single-stranded or double-stranded, representing the sense or antisense strand. Similarly, the term "amino acid sequence" refers to an oligopeptide, peptide, polypeptide or protein sequence and fragments or portions thereof. When the "amino acid sequence" in the present invention relates to the amino acid sequence of a naturally occurring protein molecule, such "polypeptide" or "protein" does not mean to limit the amino acid sequence to a complete natural amino acid related to the protein molecule .
蛋白质或多核苷酸 "变体" 是指一种具有一个或多个氨基酸或核苷酸改变的 氨基酸序列或编码它的多核苷酸序列。 所述改变可包括氨基酸序列或核苷酸序列 中氨基酸或核苷酸的缺失、 插入或替换。 变体可具有 "保守性" 改变, 其中替换 的氨基酸具有与原氨基酸相类似的结构或化学性质, 如用亮氨酸替换异亮氨酸。 变体也可具有非保守性改变, 如用色氨酸替换甘氨酸。 A protein or polynucleotide "variant" refers to an amino acid sequence having one or more amino acids or nucleotide changes, or a polynucleotide sequence encoding it. The changes may include deletions, insertions or substitutions of amino acids or nucleotides in the amino acid sequence or nucleotide sequence. Variants may have "conservative" changes in which the substituted amino acid has a structural or chemical property similar to the original amino acid, such as replacing isoleucine with leucine. Variants can also have non-conservative changes, such as replacing glycine with tryptophan.
"缺失" 是指在氨基酸序列或核苷酸序列中一个或多个氨基酸或核苷酸的缺 失。  "Deletion" refers to the deletion of one or more amino acids or nucleotides in an amino acid sequence or nucleotide sequence.
"插入" 或 "添加" 是指在氨基酸序列或核苷酸序列中的改变导致与天然存在的 分子相比, 一个或多个氨基酸或核苷酸的增加。 "替换" 是指由不同的氨基酸或核苷 酸替换一个或多个氨基酸或核苷酸。  "Insertion" or "addition" refers to an alteration in the amino acid sequence or nucleotide sequence that results in an increase in one or more amino acids or nucleotides compared to a naturally occurring molecule. "Replacement" refers to the replacement of one or more amino acids or nucleotides with different amino acids or nucleotides.
"生物活性" 是指具有天然分子的结构、 调控或生物化学功能的蛋白质。 类似地, 术语 "免疫学活性" 是指天然的、 重组的或合成蛋白质及其片段在合适的动物或细 胞中诱导特定免疫反应以及与特异性抗体结合的能力。  "Biological activity" refers to a protein that has the structure, regulation, or biochemical function of a natural molecule. Similarly, the term "immunologically active" refers to the ability of natural, recombinant or synthetic proteins and fragments thereof to induce a specific immune response and to bind specific antibodies in a suitable animal or cell.
"激动剂" 是指当与人淀粉类前体蛋白结合蛋白 9结合时, 一种可引起该蛋白 质改变从而调节该蛋白质活性的分子。 激动剂可以包括蛋白质、 核酸、 碳水化合 物或任何其它可结合人淀粉类前体蛋白结合蛋白 9的分子。  An "agonist" refers to a molecule that, when combined with human amyloid precursor protein binding protein 9, causes a change in the protein to regulate the activity of the protein. An agonist may include a protein, a nucleic acid, a carbohydrate, or any other molecule that can bind human starch precursor protein binding protein 9.
"拮抗剂" 或 "抑制物" 是指当与人淀粉类前体蛋白结合蛋白 9结合时, 一种 可封闭或调节人淀粉类前体蛋白结合蛋白 9的生物学活性或免疫学活性的分子。 拮抗剂和抑制物可以包括蛋白质、 核酸、 碳水化合物或任何其它可结合人淀粉类 前体蛋白结合蛋白 9的分子。  An "antagonist" or "inhibitor" refers to a molecule that can block or regulate the biological or immunological activity of human amyloid precursor protein binding protein 9 when bound to human amyloid precursor protein binding protein 9. . Antagonists and inhibitors may include proteins, nucleic acids, carbohydrates, or any other molecule that can bind human starch precursor protein binding protein 9.
"调节" 是指人淀粉类前体蛋白结合蛋白 9的功能发生改变, 包括蛋白质活性 的升高或降低、 结合特性的改变及人淀粉类前体蛋白结合蛋白 9的任何其它生物 学性质、 功能或免疫性质的改变。  "Regulation" refers to a change in the function of human amyloid precursor protein binding protein 9, including an increase or decrease in protein activity, a change in binding characteristics, and any other biological properties and functions of human amyloid precursor protein binding protein 9. Or changes in immune properties.
"基本上纯' '是指基本上不含天然与其相关的其它蛋白、 脂类、 糖类或其它物质。 本领域的技术人员能用标准的蛋白质纯化技术纯化人淀粉类前体蛋白结合蛋白 9。 基本上纯的人淀粉类前体蛋白结合蛋白 9 在非还原性聚丙烯酰胺凝胶上能产生单一 的主带。 人淀粉类前体蛋白结合蛋白 9多肽的纯度可用氨基酸序列分析。  "Substantially pure '" means essentially free of other proteins, lipids, sugars or other substances with which it is naturally associated. Those skilled in the art can purify human starch precursor protein binding protein 9 using standard protein purification techniques 9 The substantially pure human amyloid precursor protein binding protein 9 can generate a single main band on a non-reducing polyacrylamide gel. The purity of the human amyloid precursor protein binding protein 9 polypeptide can be analyzed by amino acid sequence.
"互补的" 或 "互补" 是指在允许的盐浓度和温度条件下通过碱基配对的多 核苷酸天然结合。 例如, 序列 "C-T-G-A " 可与互补的序列 "G-A-C-T" 结合。 两 个单链分子之间的互补可以是部分的或全部的。 核酸链之间的互补程度对于核酸 链之间杂交的效率及强度有明显影响。  "Complementary" or "complementary" refers to the natural binding of polynucleotides by base-pairing under conditions of acceptable salt concentration and temperature. For example, the sequence "C-T-G-A" can be combined with the complementary sequence "G-A-C-T". The complementarity between two single-stranded molecules can be partial or complete. The degree of complementarity between nucleic acid strands has a significant effect on the efficiency and strength of hybridization between nucleic acid strands.
"同源性" 是指互补的程度, 可以是部分同源或完全同源。 "部分同源" 是 指一种部分互补的序列, 其至少可部分抑制完全互补的序列与靶核酸的杂交。 这 种杂交的抑制可通过在严格性程度降低的条件下进行杂交 ( Sou t he rn印迹或 "Homology" refers to the degree of complementarity and can be partially homologous or completely homologous. "Partial homology" refers to a partially complementary sequence that at least partially inhibits hybridization of a fully complementary sequence to a target nucleic acid. Inhibition of this hybridization can be achieved by hybridization under conditions of reduced stringency (Sou t he rn blot or
Nor t he rn印迹等) 来检测。 基本上同源的序列或杂交探针可竟争和抑制完全同源 的序列与靶序列在的严格性程度降低的条件下的结合。 这并不意味严格性程度降 低的条件允许非特异性结合, 因为严格性程度降低的条件要求两条序列相互的结 合为特异性或选择性相互作用。 Nor t he rn blot, etc.) to detect. Substantially homologous sequences or hybridization probes can compete and inhibit the binding of completely homologous sequences to the target sequence under conditions of reduced stringency. This does not imply a reduction in stringency Low conditions allow non-specific binding because conditions of reduced stringency require that the two sequences bind to each other as a specific or selective interaction.
"相同性百分率" 是指在两种或多种氨基酸或核酸序列比较中序列相同或相 似的百分率。 可用电子方法测定相同性百分率, 如通过 MEGALIGN程序 ( Lasergene software package, 腿 STAR, Inc. , Madison Wis. ) 。 MEGALIGN程序可根据不同 的方法如 Cluster法比较两种或多种序列(Higgins, D. G. 和 P.M. Sharp (1988) Gene 73: 237-244) 0 C lus ter法通过检查所有配对之间的距离将各组序列排列成 簇。 然后将各簇以成对或成组分配。 两个氨基酸序列如序列 A和序列 B之间的相同 性百分率通过下式计算: 序列 A与序列 B之间匹配的残基个数 "Percent identity" refers to the percentage of sequences that are identical or similar in the comparison of two or more amino acid or nucleic acid sequences. The percent identity can be determined electronically, such as by the MEGALIGN program (Lasergene software package, Leg STAR, Inc., Madison Wis.). The MEGALIGN program can compare two or more sequences according to different methods such as the Cluster method (Higgins, DG and PM Sharp (1988) Gene 73: 237-244). 0 The C Luster method groups each group by checking the distance between all pairs. The sequences are arranged in clusters. The clusters are then assigned in pairs or groups. The percent identity between two amino acid sequences such as sequence A and sequence B is calculated by the following formula: The number of matching residues between sequence A and sequence B
X 100  X 100
序列 A的残基数一序列 A中间隔残基数一序列 B中间隔残基数 也可以通过 Cluster法或用本领域周知的方法如 Jotun Hein 测定核酸序列之 间的相同性百分率(Hein J. , (1990) Methods in emzumology 183: 625-645)。  The number of residues in sequence A-the number of spacer residues in sequence A-the number of spacer residues in sequence B can also be determined by the Cluster method or by methods known in the art such as Jotun Hein. (1990) Methods in emzumology 183: 625-645).
"相似性" 是指氨基酸序列之间排列对比时相应位置氨基酸残基的相同或保 守性取代的程度。 用于保守性取代的氨基酸例如, 带负电荷的氨基酸可包括天冬 氨酸和谷氨酸; 带正电荷的氨基酸可包括赖氨酸和精氨酸; 具有不带电荷的头部 基团有相似亲水性的氨基酸可包括亮氨酸、 异亮氨酸和缬氨酸; 甘氨酸和丙氨酸; 天冬酰胺和谷氨酰胺; 丝氨酸和苏氨酸; 苯丙氨酸和酪氨酸。  "Similarity" refers to the degree of identical or conservative substitutions of amino acid residues at corresponding positions in the alignment of amino acid sequences. Amino acids used for conservative substitutions, for example, negatively charged amino acids may include aspartic acid and glutamic acid; positively charged amino acids may include lysine and arginine; having an uncharged head group is Similar hydrophilic amino acids may include leucine, isoleucine and valine; glycine and alanine; asparagine and glutamine; serine and threonine; phenylalanine and tyrosine.
"反义" 是指与特定的 DNA或 RNA序列互补的核苷酸序列。 "反义链" 是指与 "有义链" 互补的核酸链。  "Antisense" refers to a nucleotide sequence that is complementary to a particular DNA or RNA sequence. "Antisense strand" refers to a nucleic acid strand that is complementary to the "sense strand".
"衍生物" 是指 HFP或编码其的核酸的化学修饰物。 这种化学修饰物可以是用 烷基、 酰基或氨基替换氢原子。 核酸衍生物可编码保留天然分子的主要生物学特 性的多肽。  "Derivative" refers to a chemical modification of HFP or a nucleic acid encoding it. Such a chemical modification may be the replacement of a hydrogen atom with an alkyl group, an acyl group or an amino group. Nucleic acid derivatives can encode polypeptides that retain the main biological characteristics of natural molecules.
"抗体" 是指完整的抗体分子及其片段, 如 Fa、 ?(^')2及?^ 其能特异性 结合人淀粉类前体蛋白结合蛋白 9的抗原决定簇。 "Antibody" refers to a complete antibody molecule and its fragments, such as Fa,? (^ ') 2 and? ^ It can specifically bind to the epitope of human amyloid precursor protein binding protein 9.
"人源化抗体" 是指非抗原结合区域的氨基酸序列被替换变得与人抗体更为 相似, 但仍保留原始结合活性的抗体。  A "humanized antibody" refers to an antibody in which the amino acid sequence of a non-antigen binding region is replaced to become more similar to a human antibody, but still retains the original binding activity.
"分离的" 一词指将物质从它原来的环境 (例如, 若是自然产生的就指其天 然环境) 之中移出。 比如说, 一个自然产生的多核苷酸或多肽存在于活动物中就 是没有被分离出来, 但同样的多核苷酸或多肽同一些或全部在自然系统中与之共 存的物质分开就是分离的。 这样的多核苷酸可能是某一载体的一部分, 也可能这 样的多核苷酸或多肽是某一组合物的一部分。 既然载体或组合物不是它天然环境 的成分, 它们仍然是分离的。 如本发明所用, "分离的" 是指物质从其原始环境中分离出来 (如果是天然 的物质, 原始环境即是天然环境) 。 如活体细胞内的天然状态下的多聚核苷酸和 多肽是没有分离纯化的, 但同样的多聚核苷酸或多肽如从天然状态中同存在的其 他物质中分开, 则为分离纯化的。 The term "isolated" refers to the removal of a substance from its original environment (for example, its natural environment if it occurs naturally). For example, a naturally-occurring polynucleotide or polypeptide exists in a living animal. It is not isolated, but the same polynucleotide or polypeptide is separated from some or all of the substances that coexist with it in the natural system. Such a polynucleotide may be part of a certain vector, or such a polynucleotide or polypeptide may be part of a certain composition. Since the carrier or composition is not a component of its natural environment, they are still isolated. As used herein, "isolated" refers to the separation of a substance from its original environment (if it is a natural substance, the original environment is the natural environment). For example, polynucleotides and polypeptides in a natural state in a living cell are not isolated and purified, but the same polynucleotides or polypeptides are separated and purified if they are separated from other substances existing in the natural state. .
如本文所用, "分离的人淀粉类前体蛋白结合蛋白 9" 是指人淀粉类前体蛋 白结合蛋白 9 基本上不含天然与其相关的其它蛋白、 脂类、 糖类或其它物质。 本 领域的技术人员能用标准的蛋白质纯化技术纯化人淀粉类前体蛋白结合蛋白 9。 基本上纯的多肽在非还原聚丙烯酰胺凝胶上能产生单一的主带。 人淀粉类前体蛋 白结合蛋白 9多肽的纯度能用氨基酸序列分析。  As used herein, "isolated human amyloid precursor protein binding protein 9" refers to human amyloid precursor protein binding protein 9 which is substantially free of other proteins, lipids, carbohydrates, or other substances with which it is naturally associated. Those skilled in the art can purify human starch precursor protein binding protein 9 using standard protein purification techniques. Substantially pure polypeptides can produce a single main band on a non-reducing polyacrylamide gel. The purity of the human starch precursor protein-binding protein 9 polypeptide can be analyzed by amino acid sequence.
本发明提供了一种新的多肽一一人淀粉类前体蛋白结合蛋白 9 , 其基本上是由 The present invention provides a new polypeptide, a human amyloid precursor protein binding protein 9, which is basically composed of
SEQ ID N0: 2所示的氨基酸序列组成的。 本发明的多肽可以是重组多肽、 天然多肽、 合成多肽, 优选重组多肽。 本发明的多肽可以是天然纯化的产物, 或是化学合成的 产物, 或使用重组技术从原核或真核宿主(例如, 细菌、 酵母、 高等植物、 昆虫和 哺乳动物细胞)中产生。 根据重组生产方案所用的宿主, 本发明的多肽可以是糖基 化的, 或可以是非糖基化的。 本发明的多肽还可包括或不包括起始的甲硫氨酸残基。 Consisting of the amino acid sequence shown in SEQ ID NO: 2. The polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide, or a synthetic polypeptide, and preferably a recombinant polypeptide. The polypeptides of the present invention can be naturally purified products, or chemically synthesized products, or can be produced from prokaryotic or eukaryotic hosts (eg, bacteria, yeast, higher plants, insects, and mammalian cells) using recombinant techniques. Depending on the host used in the recombinant production protocol, the polypeptide of the invention may be glycosylated, or it may be non-glycosylated. Polypeptides of the invention may also include or exclude starting methionine residues.
本发明还包括人淀粉类前体蛋白结合蛋白 9 的片段、 衍生物和类似物。 如本 发明所用, 术语 "片段" 、 "衍生物" 和 "类似物" 是指基本上保持本发明的人 淀粉类前体蛋白结合蛋白 9 相同的生物学功能或活性的多肽。 本发明多肽的片 段、 衍生物或类似物可以是: ( I ) 这样一种, 其中一个或多个氨基酸残基被保 守或非保守氨基酸残基 (优选的是保守氨基酸残基) 取代, 并且取代的氨基酸可 以是也可以不是由遗传密码子编码的; 或者 ( Π ) 这样一种, 其中一个或多个氨 基酸残基上的某个基团被其它基团取代包含取代基; 或者 ( i n ) 这样一种, 其 中成熟多肽与另一种化合物 ( 比如延长多肽半衰期的化合物, 例如聚乙二醇) 融 合; 或者 ( IV ) 这样一种, 其中附加的氨基酸序列融合进成熟多肽而形成的多肽 序列 (如前导序列或分泌序列或用来纯化此多肽的序列或蛋白原序列) 通过本文 的阐述, 这样的片段、 衍生物和类似物被认为在本领域技术人员的知识范围之内。  The invention also includes fragments, derivatives, and analogs of human amyloid precursor protein-binding protein 9. As used in the present invention, the terms "fragment", "derivative" and "analog" refer to a polypeptide that substantially retains the same biological function or activity of the human amyloid precursor protein-binding protein 9 of the present invention. A fragment, derivative or analog of the polypeptide of the present invention may be: (I) a kind in which one or more amino acid residues are substituted with conservative or non-conservative amino acid residues (preferably conservative amino acid residues), and the substitution The amino acid may or may not be encoded by a genetic codon; or (Π) such a type in which a group on one or more amino acid residues is substituted by another group to include a substituent; or (in) such One, wherein the mature polypeptide is fused to another compound (such as a compound that extends the half-life of the polypeptide, such as polyethylene glycol); or (IV) such a polypeptide sequence in which an additional amino acid sequence is fused into the mature polypeptide ( Such as the leader sequence or secreted sequence or the sequence used to purify this polypeptide or protease sequence) As explained herein, such fragments, derivatives and analogs are considered to be within the knowledge of those skilled in the art.
本发明提供了分离的核酸 (多核苷酸) , 基本由编码具有 SEQ ID NO: 2 氨 基酸序列的多肽的多核苷酸组成。 本发明的多核苷酸序列包括 SEQ ID N0: 1 的核 苷酸序列。 本发明的多核苷酸是从人胎脑组织的 cDNA 文库中发现的。 它包含的 多核苷酸序列全长为 1892个碱基, 其开放读框 1602- 1853编码了 83个氨基酸。 根据基因芯片表达谱比较发现, 此多肽与人淀粉类前体蛋白结合蛋白 13 有相似 的表达谱, 可推断出该人淀粉类前体蛋白结合蛋白 9具有人淀粉类前体蛋白结合 蛋白 13相似的功能。 The present invention provides an isolated nucleic acid (polynucleotide), which basically consists of an amino acid encoding SEQ ID NO: 2 Polynucleotide composition of a polypeptide of the amino acid sequence. The polynucleotide sequence of the present invention includes the nucleotide sequence of SEQ ID NO: 1. The polynucleotide of the present invention is found from a cDNA library of human fetal brain tissue. It contains a polynucleotide sequence with a total length of 1892 bases and its open reading frame 1602-1853 encodes 83 amino acids. According to the comparison of gene chip expression profiles, it was found that this polypeptide has a similar expression profile with human amyloid precursor protein binding protein 13, and it can be inferred that the human amyloid precursor protein binding protein 9 is similar to human amyloid precursor protein binding protein 13. Functions.
本发明的多核苷酸可以是 DNA形式或是 RNA形式。 DNA形式包括 cDNA、 基因 组 DNA 或人工合成的 DNA。 DNA 可以是单链的或是双链的。 DNA 可以是编码链或 非编码链。 编码成熟多肽的编码区序列可以与 SEQ ID NO: 1 所示的编码区序列相 同或者是简并的变异体。 如本发明所用, "简并的变异体" 在本发明中是指编码 具有 SEQ ID NO: 2 的蛋白质或多肽, 但与 SEQ ID NO: 1 所示的编码区序列有差别 的核酸序列。  The polynucleotide of the present invention may be in the form of DNA or RNA. DNA forms include cDNA, genomic DNA, or synthetic DNA. DNA can be single-stranded or double-stranded. DNA can be coding or non-coding. The coding region sequence encoding a mature polypeptide may be the same as the coding region sequence shown in SEQ ID NO: 1 or a degenerate variant. As used herein, a "degenerate variant" refers to a nucleic acid sequence that encodes a protein or polypeptide having SEQ ID NO: 2 but is different from the coding region sequence shown in SEQ ID NO: 1 in the present invention.
编码 SEQ ID NO: 2 的成熟多肽的多核苷酸包括: 只有成熟多肽的编码序列; 成熟多肽的编码序列和各种附加编码序列; 成熟多肽的编码序列 (和任选的附加 编码序列 ) 以及非编码序列。  The polynucleotide encoding the mature polypeptide of SEQ ID NO: 2 includes: only the coding sequence of the mature polypeptide; the coding sequence of the mature polypeptide and various additional coding sequences; the coding sequence of the mature polypeptide (and optional additional coding sequences); Coding sequence.
术语 "编码多肽的多核苷酸" 是指包括编码此多肽的多核苷酸和包括附加编 码和 /或非编码序列的多核苷酸。  The term "polynucleotide encoding a polypeptide" refers to a polynucleotide that includes the polypeptide and a polynucleotide that includes additional coding and / or non-coding sequences.
本发明还涉及上述描述多核苷酸的变异体, 其编码与本发明有相同的氨基酸 序列的多肽或多肽的片断、 类似物和衍生物。 此多核苷酸的变异体可以是天然发 生的等位变异体或非天然发生的变异体。 这些核苷酸变异体包括取代变异体、 缺 失变异体和插入变异体。 如本领域所知的, 等位变异体是一个多核苷酸的替换形 式, 它可能是一个或多个核苷酸的取代、 缺失或插入, 但不会从实质上改变其编 码的多肽的功能。  The invention also relates to variants of the polynucleotides described above, which encode polypeptides or fragments, analogs and derivatives of polypeptides having the same amino acid sequence as the invention. This polynucleotide variant can be a naturally occurring allelic variant or a non-naturally occurring variant. These nucleotide variants include substitution variants, deletion variants, and insertion variants. As known in the art, an allelic variant is an alternative form of a polynucleotide that may be a substitution, deletion, or insertion of one or more nucleotides, but does not substantially change the function of the polypeptide it encodes .
本发明还涉及与以上所描述的序列杂交的多核苷酸 (两个序列之间具有至少 50%, 优选具有 70%的相同性) 。 本发明特别涉及在严格条件下与本发明所述多 核苷酸可杂交的多核苷酸。 在本发明中, "严格条件" 是指: (1)在较低离子强 度和较高温度下的杂交和洗脱, 如 0.2xSSC, 0. 1%SDS, 60°C;或(2)杂交时加用变 性剂, 如 50¾(v/v)甲酰胺, 0.1%小牛血清 /0. l%Ficoll, 42°C等; 或(3)仅在两条 序列之间的相同性至少在 95%以上,更好是 97%以上时才发生杂交。 并且, 可杂交 的多核苷酸编码的多肽与 SEQ ID NO: 2 所示的成熟多肽有相同的生物学功能和 活性。  The invention also relates to a polynucleotide that hybridizes to the sequence described above (having at least 50%, preferably 70% identity between the two sequences). The present invention particularly relates to polynucleotides that can hybridize to the polynucleotides of the present invention under stringent conditions. In the present invention, "strict conditions" means: (1) hybridization and elution at lower ionic strength and higher temperature, such as 0.2xSSC, 0.1% SDS, 60 ° C; or (2) hybridization When adding a denaturant, such as 50¾ (v / v) formamide, 0.1% calf serum / 0.1% Ficoll, 42 ° C, etc .; or (3) the identity between the two sequences is at least 95 % Or more, preferably 97% or more. In addition, the polypeptide encoded by the hybridizable polynucleotide has the same biological function and activity as the mature polypeptide shown in SEQ ID NO: 2.
本发明还涉及与以上所描述的序列杂交的核酸片段。 如本发明所用, "核酸 片段"的长度至少含 10个核苷酸, 较好是至少 20- 30个核苷酸, 更好是至少 SO- SO 个核苷酸, 最好是至少 100 个核苷酸以上。 核酸片段也可用于核酸的扩增技 术(如 PCR)以确定和 /或分离编码人淀粉类前体蛋白结合蛋白 9的多核苷酸。 The invention also relates to nucleic acid fragments that hybridize to the sequences described above. As used in the present invention, "nucleic acid A "fragment" contains at least 10 nucleotides in length, preferably at least 20-30 nucleotides, more preferably at least SO-SO nucleotides, and most preferably at least 100 nucleotides. Nucleic acid fragments are also Nucleic acid amplification techniques (such as PCR) can be used to identify and / or isolate polynucleotides encoding human amyloid precursor protein binding protein 9.
本发明中的多肽和多核苷酸优选以分离的形式提供, 更佳地被纯化至均质。 本发明的编码人淀粉类前体蛋白结合蛋白 9 的特异的多核苷酸序列能用多种 方法获得。 例如, 用本领域熟知的杂交技术分离多核苷酸。 这些技术包括但不局 限于: 1)用探针与基因组或 cDNA 文库杂交以检出同源的多核苷酸序列, 和 2)表 达文库的抗体筛选以检出具有共同结构特征的克隆的多核苷酸片段。  The polypeptides and polynucleotides in the present invention are preferably provided in an isolated form and are more preferably purified to homogeneity. The specific polynucleotide sequence encoding the human starch precursor protein-binding protein 9 of the present invention can be obtained by various methods. For example, polynucleotides are isolated using hybridization techniques well known in the art. These techniques include, but are not limited to: 1) hybridization of probes to genomic or cDNA libraries to detect homologous polynucleotide sequences, and 2) antibody screening of expression libraries to detect cloned polynucleosides with common structural characteristics Acid fragments.
本发明的 DNA 片段序列也能用下列方法获得: 1)从基因组 DNA 分离双链 DNA 序列; 2)化学合成 DNA序列以获得所述多肽的双链 DNA。  The DNA fragment sequence of the present invention can also be obtained by the following methods: 1) isolating the double-stranded DNA sequence from the genomic DNA; 2) chemically synthesizing the DNA sequence to obtain the double-stranded DNA of the polypeptide.
上述提到的方法中, 分离基因组 DNA 最不常用。 DNA 序列的直接化学合成是 经常选用的方法。 更经常选用的方法是 cDNA序列的分离。 分离感兴趣的 cDNA 的 标准方法是从高表达该基因的供体细胞分离 n 并进行逆转录, 形成质粒或噬 菌体 cDNA 文库。 提取 mRNA 的方法已有多种成熟的技术, 试剂盒也可从商业途径 获得(Qiagene)。 而构建 cDNA文库也是通常的方法(Sambrook, et al. , Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory. New York , 1989)。 还可得到商业供应的 cDNA 文库, 如 Clontech公司的不同 cDNA文库。 当 结合使用聚合酶反应技术时, 即使极少的表达产物也能克隆。  Of the methods mentioned above, genomic DNA isolation is the least commonly used. Direct chemical synthesis of DNA sequences is often the method of choice. The more commonly used method is the isolation of cDNA sequences. The standard method for isolating the cDNA of interest is to isolate n from donor cells that overexpress the gene and perform reverse transcription to form a plasmid or phage cDNA library. Various methods have been developed for mRNA extraction, and kits are also commercially available (Qiagene). The construction of cDNA libraries is also a common method (Sambrook, et al., Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory. New York, 1989). Commercially available cDNA libraries are also available, such as different cDNA libraries from Clontech. When combined with polymerase reaction technology, even very small expression products can be cloned.
可用常规方法从这些 cDNA 文库中筛选本发明的基因。 这些方法包括(但不限 于): (DDNA-DNA 或 DNA-RNA 杂交; (2)标志基因功能的出现或丧失; (3)测定人 淀粉类前体蛋白结合蛋白 9 的转录本的水平; (4)通过免疫学技术或测定生物学 活性, 来检测基因表达的蛋白产物。 上述方法可单用, 也可多种方法联合应用。  The genes of the present invention can be selected from these cDNA libraries by conventional methods. These methods include (but are not limited to): (DDNA-DNA or DNA-RNA hybridization; (2) the presence or absence of marker gene functions; (3) determination of the level of transcripts of human amyloid precursor protein binding protein 9; ( 4) Detecting the protein product of gene expression through immunological techniques or measuring biological activity. The above methods can be used alone or in combination.
在第(1)种方法中, 杂交所用的探针是与本发明的多核苷酸的任何一部分同 源, 其长度至少 10 个核苷酸, 较好是至少 30 个核苷酸, 更好是至少 50 个核苷 酸, 最好是至少 100 个核苷酸。 此外, 探针的长度通常在 2000 个核苷酸之内, 较佳的为 1000 个核苷酸之内。 此处所用的探针通常是在本发明的基因序列信息 的基础上化学合成的 DNA 序列。 本发明的基因本身或者片段当然可以用作探针。 DNA探针的标记可用放射性同位素, 荧光素或酶(如碱性磷酸酶)等。  In the method (1), the probe used for hybridization is homologous to any part of the polynucleotide of the present invention, and its length is at least 10 nucleotides, preferably at least 30 nucleotides, more preferably At least 50 nucleotides, preferably at least 100 nucleotides. In addition, the length of the probe is usually within 2000 nucleotides, preferably within 1000 nucleotides. The probe used here is usually a DNA sequence chemically synthesized based on the gene sequence information of the present invention. The genes or fragments of the present invention can of course be used as probes. DNA probes can be labeled with radioisotopes, luciferin, or enzymes (such as alkaline phosphatase).
在第(4)种方法中, 检测人淀粉类前体蛋白结合蛋白 9 基因表达的蛋白产物 可用免疫学技术如 Western 印迹法, 放射免疫沉淀法, 酶联免疫吸附法(ELISA) 等。  In the method (4), the protein product of human amyloid precursor protein binding protein 9 gene expression can be detected by immunological techniques such as Western blotting, radioimmunoprecipitation, and enzyme-linked immunosorbent assay (ELISA).
应用 PCR技术扩增 DNA/RNA的方法(Saiki, et al. Science 1985; 230: 1350- 1354)被优选用于获得本发明的基因。 特别是很难从文库中得到全长的 cDNA 时, 可优选使用 RACE 法(RACE - cDNA末端快速扩增法), 用于 PCR 的引物可根据本文 所公开的本发明的多核苷酸序列信息适当地选择, 并可用常规方法合成。 可用常 规方法如通过凝胶电泳分离和纯化扩增的 DNA/RNA片段。 Methods for Amplifying DNA / RNA Using PCR Techniques (Saiki, et al. Science 1985; 230: 1350- 1354) is preferably used to obtain the genes of the present invention. In particular, when it is difficult to obtain a full-length cDNA from a library, the RACE method (RACE-rapid amplification of cDNA ends) may be preferably used. The primers used for PCR may be appropriately based on the polynucleotide sequence information of the present invention disclosed herein. Select and synthesize using conventional methods. The amplified DNA / RNA fragments can be isolated and purified by conventional methods such as by gel electrophoresis.
如上所述得到的本发明的基因, 或者各种 DNA 片段等的多核苷酸序列可用常 规方法如双脱氧链终止法(Sanger et al. PNAS, 1977, 74: 5463- 5467)测定。 这 类多核苷酸序列测定也可用商业测序试剂盒等。 为了获得全长的 cDNA 序列, 测 序需反复进行。 有时需要测定多个克隆的 cDNA序列, 才能拼接成全长的 cDNA序 列。  The polynucleotide sequence of the gene of the present invention or various DNA fragments and the like obtained as described above can be determined by a conventional method such as dideoxy chain termination method (Sanger et al. PNAS, 1977, 74: 5463-5467). Such polynucleotide sequences can also be determined using commercial sequencing kits. In order to obtain the full-length cDNA sequence, the sequencing must be repeated. Sometimes it is necessary to determine the cDNA sequence of multiple clones in order to splice into a full-length cDNA sequence.
本发明也涉及包含本发明的多核苷酸的载体, 以及用本发明的载体或直接用 人淀粉类前体蛋白结合蛋白 9 编码序列经基因工程产生的宿主细胞, 以及经重组 技术产生本发明所述多肽的方法。  The present invention also relates to a vector comprising the polynucleotide of the present invention, and a host cell produced by genetic engineering using the vector of the present invention or directly using a human starch precursor protein binding protein 9 coding sequence, and the recombinant technology to produce the described Polypeptide method.
本发明中, 编码人淀粉类前体蛋白结合蛋白 9 的多核苷酸序列可插入到载体 中, 以构成含有本发明所述多核苷酸的重组载体。 术语 "载体" 指本领域熟知的 细菌质粒、 噬菌体、 酵母质粒、 植物细胞病毒、 哺乳动物细胞病毒如腺病毒、 逆 转录病毒或其它载体。 在本发明中适用的载体包括但不限于: 在细菌中表达的基 于 T7启动子的表达载体(Rosenberg, et al. Gene, 1987, 56: 125); 在哺乳动物 细胞中表达的 pMSXND表达载体(Lee and Nathans, J Bio Chem. 263: 3521, 1988) 和在昆虫细胞中表达的来源于杆状病毒的载体。 总之, 只要能在宿主体内复制和 稳定, 任何质粒和载体都可以用于构建重组表达载体。 表达载体的一个重要特征 是通常含有复制起始点、 启动子、 标记基因和翻译调控元件。  In the present invention, a polynucleotide sequence encoding a human starch precursor protein binding protein 9 may be inserted into a vector to constitute a recombinant vector containing the polynucleotide of the present invention. The term "vector" refers to bacterial plasmids, phages, yeast plasmids, plant cell viruses, mammalian cell viruses such as adenoviruses, retroviruses, or other vectors well known in the art. Vectors suitable for use in the present invention include, but are not limited to: T7 promoter-based expression vectors (Rosenberg, et al. Gene, 1987, 56: 125) expressed in bacteria; pMSXND expression vectors expressed in mammalian cells ( Lee and Nathans, J Bio Chem. 263: 3521, 1988) and baculovirus-derived vectors expressed in insect cells. In short, as long as it can be replicated and stabilized in the host, any plasmid and vector can be used to construct a recombinant expression vector. An important feature of expression vectors is that they usually contain an origin of replication, a promoter, a marker gene, and translational regulatory elements.
本领域的技术人员熟知的方法能用于构建含编码人淀粉类前体蛋白结合蛋白 9的 DNA序列和合适的转录 /翻译调控元件的表达载体。这些方法包括体外重组 DNA 技术、 DNA合成技术、 体内重组技术等(Sambroook, et al. Molecular Cloning, a Laboratory Manual, cold Spring Harbor Laboratory. New York, 1989)。 所述 的 DNA 序列可有效连接到表达载体中的适当启动子上, 以指导 mRNA 合成。 这些 启动子的代表性例子有: 大肠杆菌的 lac或 trp启动子; λ噬菌体的 PL启动子; 真核启动子包括 CMV立即早期启动子、 HSV胸苷激酶启动子、 早期和晚期 SV40启 动子、 反转录病毒的 LTRs 和其它一些已知的可控制基因在原核细胞或真核细胞 或其病毒中表达的启动子。 表达载体还包括翻译起始用的核糖体结合位点和转录 终止子等。 在载体中插入增强子序列将会使其在高等真核细胞中的转录得到增 强。 增强子是 DNA表达的顺式作用因子, 通常大约有 10 到 300 个碱基对, 作用 于启动子以增强基因的转录。可举的例子包括在复制起始点晚期一侧的 1 00到 270 个碱基对的 SV40 增强子、 在复制起始点晚期一侧的多瘤增强子以及腺病毒增强 子等。 Methods known to those skilled in the art can be used to construct expression vectors containing a DNA sequence encoding human amyloid precursor protein binding protein 9 and appropriate transcription / translation regulatory elements. These methods include in vitro recombinant DNA technology, DNA synthesis technology, and in vivo recombination technology (Sambroook, et al. Molecular Cloning, a Laboratory Manual, cold Spring Harbor Laboratory. New York, 1989). The DNA sequence can be operably linked to an appropriate promoter in an expression vector to guide mRNA synthesis. Representative examples of these promoters are: the lac or trp promoter of E. coli; the PL promoter of lambda phage; eukaryotic promoters include the CMV immediate early promoter, the HSV thymidine kinase promoter, the early and late SV40 promoters, Retroviral LTRs and other known promoters that control the expression of genes in prokaryotic or eukaryotic cells or their viruses. The expression vector also includes a ribosome binding site and a transcription terminator for translation initiation. Insertion of enhancer sequences into the vector will enhance its transcription in higher eukaryotic cells. Enhancers are cis-acting factors for DNA expression, usually about 10 to 300 base pairs. To promoters to enhance gene transcription. Illustrative examples include SV40 enhancers from 100 to 270 base pairs on the late side of the origin of replication, polyoma enhancers on the late side of the origin of replication, and adenovirus enhancers.
此外, 表达载体优选地包含一个或多个选择性标记基因, 以提供用于选择转 化的宿主细胞的表型性状, 如真核细胞培养用的二氢叶酸还原晦、 新霉素抗性以 及绿色荧光蛋白(GFP) , 或用于大肠杆菌的四环素或氨苄青霉素抗性等。  In addition, the expression vector preferably contains one or more selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reduction, neomycin resistance, and green for eukaryotic cell culture. Fluorescent protein (GFP), or tetracycline or ampicillin resistance for E. coli.
本领域一般技术人员都清楚如何选择适当的载体 /转录调控元件 (如启动 子、 增强子等) 和选择性标记基因。  Those of ordinary skill in the art will know how to select appropriate vector / transcription control elements (such as promoters, enhancers, etc.) and selectable marker genes.
本发明中, 编码人淀粉类前体蛋白结合蛋白 9 的多核苷酸或含有该多核苷酸 的重组载体可转化或转导入宿主细胞, 以构成含有该多核苷酸或重组载体的基因 工程化宿主细胞。 术语 "宿主细胞" 指原核细胞, 如细菌细胞; 或是低等真核细 胞, 如酵母细胞; 或是高等真核细胞, 如哺乳动物细胞。 代表性例子有: 大肠杆 菌, 链霉菌属; 细菌细胞如鼠伤寒沙门氏菌; 真菌细胞如酵母; 植物细胞; 昆虫 细胞如果蝇 S2或 Sf 9 ; 动物细胞如 CH0、 COS或 Bowe s黑素瘤细胞等。  In the present invention, a polynucleotide encoding a human starch precursor protein binding protein 9 or a recombinant vector containing the polynucleotide can be transformed or transduced into a host cell to form a genetically engineered host containing the polynucleotide or the recombinant vector. cell. The term "host cell" refers to a prokaryotic cell, such as a bacterial cell; or a lower eukaryotic cell, such as a yeast cell; or a higher eukaryotic cell, such as a mammalian cell. Representative examples are: E. coli, Streptomyces; bacterial cells such as Salmonella typhimurium; fungal cells such as yeast; plant cells; insect cells such as fly S2 or Sf 9; animal cells such as CH0, COS, or Bowes s melanoma cells, etc. .
用本发明所述的 DNA序列或含有所述 DNA序列的重组载体转化宿主细胞可用 本领域技术人员熟知的常规技术进行。 当宿主为原核生物如大肠杆菌时, 能吸收 DNA 的感受态细胞可在指数生长期后收获, 用 ( 1 2 法处理, 所用的步骤在本领 域众所周知。 可供选择的是用 MgC l 2。 如果需要, 转化也可用电穿孔的方法进行。 当宿主是真核生物, 可选用如下的 應 转染方法: 磷酸钙共沉淀法, 或者常规机 械方法如显微注射、 电穿孔、 脂质体包装等。 Transformation of a host cell with a DNA sequence described in the present invention or a recombinant vector containing the DNA sequence can be performed using conventional techniques well known to those skilled in the art. When the host is a prokaryote such as E. coli, competent cells capable of DNA uptake can be in the exponential growth phase were harvested, treated with (1 2 method used in the step are well known in the art. Alternatively, it is a M g C l 2. If necessary, transformation can also be performed by electroporation. When the host is a eukaryotic organism, the following transfection methods can be used: calcium phosphate co-precipitation method, or conventional mechanical methods such as microinjection, electroporation, and lipid Plastid packaging, etc.
通过常规的重组 DNA 技术, 利用本发明的多核苷酸序列可用来表达或生产重 组的人淀粉类前体蛋白结合蛋白 9 (Sc i ence , 1 984 ; 224: 1 431 )。 一般来说有以 下步骤:  Using conventional recombinant DNA technology, the polynucleotide sequence of the present invention can be used to express or produce recombinant human amyloid precursor protein binding protein 9 (Scence, 1 984; 224: 1 431). Generally there are the following steps:
(1 ) .用本发明的编码人 人淀粉类前体蛋白结合蛋白 9 的多核苷酸(或变异 体), 或用含有该多核苷酸的重组表达载体转化或转导合适的宿主细胞;  (1) using the polynucleotide (or variant) encoding human human amyloid precursor protein binding protein 9 of the present invention, or transforming or transducing a suitable host cell with a recombinant expression vector containing the polynucleotide;
(2) .在合适的培养基中培养宿主细胞;  (2) culturing host cells in a suitable medium;
( 3) .从培养基或细胞中分离、 纯化蛋白质。  (3) Isolate and purify protein from culture medium or cells.
在步骤 ( 2 ) 中, 根据所用的宿主细胞, 培养中所用的培养基可选自各种常 规培养基。 在适于宿主细胞生长的条件下进行培养。 当宿主细胞生长到适当的细 胞密度后, 用合适的方法(如温度转换或化学诱导)诱导选择的启动子, 将细胞再 培养一段时间。  In step (2), the medium used in the culture may be selected from various conventional mediums according to the host cells used. Culture is performed under conditions suitable for host cell growth. After the host cells have grown to an appropriate cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction), and the cells are cultured for a period of time.
在步骤 ( 3 ) 中, 重组多肽可包被于细胞内、 或在细胞膜上表达、 或分泌到 细胞外。 如果需要, 可利用其物理的、 化学的和其它特性通过各种分离方法分离 和纯化重组的蛋白。 这些方法是本领域技术人员所熟知的。 这些方法包括但并不 限于: 常规的复性处理、 蛋白沉淀剂处理(盐析方法)、 离心、 渗透破菌、 超声波 处理、 超离心、 分子筛层折(凝胶过滤)、 吸附层析、 离子交换层析、 高效液相层 析(HPLC)和其它各种液相层析技术及这些方法的结合。 附图的简要说明 In step (3), the recombinant polypeptide may be coated in a cell, expressed on a cell membrane, or secreted into a cell. Extracellular. If desired, recombinant proteins can be isolated and purified by various separation methods using their physical, chemical, and other properties. These methods are well known to those skilled in the art. These methods include, but are not limited to: conventional renaturation treatment, protein precipitant treatment (salting out method), centrifugation, osmotic disruption, ultrasonic treatment, ultracentrifugation, molecular sieve folding (gel filtration), adsorption chromatography, ions Exchange chromatography, high performance liquid chromatography (HPLC) and various other liquid chromatography techniques and combinations of these methods. Brief description of the drawings
下列附图用于说明本发明的具体实施方案, 而不用于限定由权利要求书所 界定的本发明范围。  The following drawings are used to illustrate specific embodiments of the invention, but not to limit the scope of the invention as defined by the claims.
图 1是本发明人淀粉类前体蛋白结合蛋白 9和人淀粉类前体蛋白结合蛋白 13 的基因芯片表达谱比较图。 上图是人淀粉类前体蛋白结合蛋白 9的表达谱折方 图, 下图是人淀粉类前体蛋白结合蛋白 13的表达谱折方图。 其中, 1表示胎肾, 2表示胎大肠, 3表示胎小肠, 4表示胎肌, 5表示胎脑, 6表示胎膀胱, 7表示未 饥饿 L02, 8表示 L02+, Ihr, As3+, 9表示 ECV304 PMA , 10表示 ECV304 PMA+, 11表 示胎肝, 12表示正常肝, 13表示甲状腺, 14表示皮肤, 15表示胎肺, 16表示肺, Π表示肺癌, 18表示胎脾, 19表示脾脏, 20表示前列腺, 21表示胎心, 22表示心 脏, 23表示肌肉, 24表示睾丸, 25表示胎胸腺, 26表示胸腺。 FIG. 1 is a comparison diagram of gene chip expression profiles of human amyloid precursor protein-binding protein 9 and human amyloid precursor protein-binding protein 13 according to the present invention. The upper graph is a graph of the expression profile of human starch precursor protein binding protein 9 and the lower graph is the graph of the expression profile of human starch precursor protein binding protein 13. Among them, 1 indicates fetal kidney, 2 indicates fetal large intestine, 3 indicates fetal small intestine, 4 indicates fetal muscle, 5 indicates fetal brain, 6 indicates fetal bladder, 7 indicates non-starved L02, 8 indicates L02 +, Ihr, As 3+ , and 9 indicates ECV304 PMA, 10 means ECV304 PMA +, 11 means fetal liver, 12 means normal liver, 13 means thyroid, 14 means skin, 15 means fetal lung, 16 means lung, Π means lung cancer, 18 means fetal spleen, 19 means spleen, 20 means For the prostate, 21 is the fetal heart, 22 is the heart, 23 is the muscle, 24 is the testis, 25 is the fetal thymus, and 26 is the thymus.
图 2为分离的人淀粉类前体蛋白结合蛋白 9的聚丙烯酰胺凝胶电泳图 (SDS - PAGE) 。 9kDa为蛋白质的分子量。 箭头所指为分离出的蛋白条带。 下面结合具体实施例, 进一步阐述本发明。 应理解, 这些实施例仅用于说明 本发明而不用于限制本发明的范围。 下列实施例中未注明具体条件的实验方法, 通常按照常规条件如 Sambrook 等人, 分子克隆: 实验室手册(New York: Cold Spring Harbor Laboratory Press, 1989)中所述的条件, 或按照制造厂商所建 议的条件。  Figure 2 shows the polyacrylamide gel electrophoresis (SDS-PAGE) of human amyloid precursor protein-binding protein 9 isolated. 9kDa is the molecular weight of the protein. The arrow indicates the isolated protein band. The present invention is further described below with reference to specific embodiments. It should be understood that these examples are only used to illustrate the present invention and not to limit the scope of the present invention. In the following examples, the experimental methods without specific conditions are generally performed according to conventional conditions such as Sambrook et al., Molecular Cloning: The conditions described in the laboratory manual (New York: Cold Spring Harbor Laboratory Press, 1989), or according to the manufacturer Suggested conditions.
实施例 1: 人淀粉类前体蛋白结合蛋白 9的克隆  Example 1: Cloning of human amyloid precursor protein binding protein 9
用异硫氰酸胍 /酚 /氯仿一步法提取人胎脑总 RNA。 用 Quik mRNA Isolation Kit (Qiegene 公司产品) 从总 RNA中分离 poly (A) mRNA。 2ug poly (A) mRNA经逆转录形 成 cDNA。 用 Smart cDNA克隆试剂盒 (购自 Clontech) 将 cDNA片段定向插入到 pBSK (+) 载体(Clontech公司产品)的多克隆位点上, 转化 DH5a , 细菌形成 cDNA文库。 用 Dye terminate cycle react ion sequencing kit (Perkin- Elmer公司产品) 和 ABI 377自 动测序仪(Perkin-Elmer公司)测定所有克隆的 5'和 3'末端的序列。 将测定的 cDNA序 列与已有的公共 DNA序列数据库(Genebank)进行比较,结果发现其中一个克隆 0135B04 的 cDNA序列为新的 DNA。 通过合成一系列引物对该克隆所含的插入 cDNA片段进行双向 测定。 结果表明, 0135B04克隆所含的全长 cDNA为 1892bp (如 Seq ID NO: 1所示) , 从第 1602bp至 1853bp有一个 251bp的开放阅读框架 ( 0RF ) , 编码一个新的蛋白质 (如 Seq ID NO: 2所示) 。 我们将此克隆命名为 pBS- 0135B04 , 编码的蛋白质命名为人淀 粉类前体蛋白结合蛋白 9。 实施例 2: 用 RT - PCR方法克隆编码人淀粉类前体蛋白结合蛋白 9的基因 Total human fetal brain RNA was extracted by one-step method with guanidine isothiocyanate / phenol / chloroform. Poly (A) mRNA was isolated from total RNA using Quik mRNA Isolation Kit (Qiegene). 2ug poly (A) mRNA is reverse transcribed to form cDNA. The Smart cDNA cloning kit (purchased from Clontech) was used to insert the cDNA fragment into the multicloning site of pBSK (+) vector (Clontech) to transform DH5a. The bacteria formed a cDNA library. Dye terminate cycle react ion sequencing kit (Perkin-Elmer) and ABI 377 automatic sequencer (Perkin-Elmer) were used to determine the sequences at the 5 'and 3' ends of all clones. CDNA sequence The column was compared with the existing public DNA sequence database (Genebank), and the cDNA sequence of one of the clones 0135B04 was found to be new DNA. A series of primers were synthesized to determine the inserted cDNA fragments of the clone in both directions. The results showed that the 0135B04 clone contained a full-length cDNA of 1892 bp (as shown in Seq ID NO: 1), and a 251 bp open reading frame (0RF) from 1602 bp to 1853 bp, encoding a new protein (such as Seq ID NO : Shown in 2). We named this clone pBS-0135B04, and encoded the protein named human amyloid precursor protein binding protein 9. Example 2: Cloning of a gene encoding human starch precursor protein binding protein 9 by RT-PCR
用胎脑细胞总 RNA为模板, 以 oligo- dT为引物进行逆转录反应合成 cDNA,用 Qiagene的试剂盒纯化后,用下列引物进行 PCR扩增:  CDNA was synthesized using fetal brain total RNA as a template and oligo-dT as a primer for reverse transcription reaction. After purification using Qiagene's kit, the following primers were used for PCR amplification:
Primerl: 5,- CTCTTCAACTAGTGAATGAAAGAA-3' (SEQ ID NO: 3)  Primerl: 5,-CTCTTCAACTAGTGAATGAAAGAA-3 '(SEQ ID NO: 3)
Primer2: 5'- TATACAAAATCACCTTAATGGTTA- 3' (SEQ ID NO: 4)  Primer2: 5'- TATACAAAATCACCTTAATGGTTA- 3 '(SEQ ID NO: 4)
Primerl为位于 SEQ ID NO: 1的 5,端的第 lbp开始的正向序列;  Primerl is a forward sequence starting at lbp of the 5th end of SEQ ID NO: 1;
Primer2为 SEQ ID NO: 1的中的 3'端反向序列。  Primer2 is the 3 'end reverse sequence in SEQ ID NO: 1.
扩增反应的条件: 在 50 μ 1的反应体积中含有 50隱 ol/L KC1, 10睡 ol/L Tris- Conditions for the amplification reaction: 50 μl of Kl1, 10 ol / L of Tris-
CI, (pH8.5), 1.5mmol/L MgCl2, 200 μ mol/L dNTP, lOpmol引物, 1U的 Taq DNA聚合酶 (C 1 on t e ch公司产品)。 在 PE 9600型 DN A热循环仪(Pe r k i n- E 1 me r公司)上按下列条件反 应 25个周期: 94。C 30sec; 55"C 30sec; 72°C 2min0 在 RT- PCR时同时设 β - actin为阳 性对照和模板空白为阴性对照。 扩增产物用 QIAGEN公司的试剂盒纯化, 用 TA克隆试 剂盒连接到 PCR载体上 ( Invitrogen公司产品 ) 。 DNA序列分析结果表明 PCR产物的 DNA 序列与 SEQ ID NO: 1所示的 1- 1892bp完全相同。 实施例 3: Northern 印迹法分析人淀粉类前体蛋白结合蛋白 9基因的表达: CI, (pH8.5), 1.5mmol / L MgCl 2 , 200 μmol / L dNTP, lOpmol primer, 1U Taq DNA polymerase (C 1 on te ch). The reaction was performed on a PE 9600 DNA thermal cycler (Perkin-Elmer) for 25 cycles under the following conditions: 94. C 30sec; 55 "C 30sec; 72 ° C 2min 0 At the same time, set β-actin as a positive control and template blank as a negative control during RT-PCR. Amplification products were purified using QIAGEN's kit and connected with TA cloning kit To a PCR vector (product of Invitrogen). The DNA sequence analysis results showed that the DNA sequence of the PCR product is exactly the same as the 1- 1892bp shown in SEQ ID NO: 1. Example 3: Northern blot analysis of human starch precursor protein binding Protein 9 gene expression:
用一步法提取总 RNA [Anal. Biochem 1987, 162, 156-159] 0 该法包括酸性硫氰 酸胍苯酚 -氯仿抽提。 即用 4M异硫氰酸胍- 25mM柠檬酸钠, 0.2M乙酸纳 ( pH4.0 ) 对组 织进行匀浆, 加入 1倍体积的苯酚和 1/5体积的氯仿-异戊醇 (49: 1 ) , 混合后离心。 吸出水相层, 加入异丙醇 ( 0.8体积) 并将混合物离心得到 RNA沉淀。 将得到的 RNA沉 淀用 70%乙醇洗涤, 干燥并溶于水中。 用 20μ§ RNA, 在含 20mM 3- (N-吗啉代) 丙磺 酸 ( pH7.0 ) -5mM乙酸钠 -ImM EDTA-2.2M甲醛的 1.2%琼脂糖凝胶上进行电泳。 然后转 移至硝酸纤维素膜上。 用 a- 32P dATP通过随机引物法制备 32P-标记的 DNA探针。 所用 的 DNA探针为图 1所示的 PCR扩增的人淀粉类前体蛋白结合蛋白 9编码区序列(1602bp至 1853bp)0 将 32P-标记的探针 (约 2 χ 106cpm/ml ) 与转移了 RNA的硝酸纤维素膜在一溶 液中于 42。C杂交过夜, 该溶液包含 50%甲酰胺 - 25mM KH2P04 ( pH7.4 ) -5 χ SSC-5 χ Denhardt's溶液和 200 g/ml鲑精 DNA。 杂交之后, 将滤膜在 1 x SSC-0.1%SDS中于 55。C 洗 30min。 然后, 用 Phosphor Imager进行分析和定量。 实施例 4: 重组人淀粉类前体蛋白结合蛋白 9的体外表达、 分离和纯化 Total RNA extraction in one step [Anal. Biochem 1987, 162, 156-159] 0 This method involves acid guanidinium thiocyanate-chloroform extraction. That is, the tissue is homogenized with 4M guanidine isothiocyanate-25mM sodium citrate, 0.2M sodium acetate (pH4.0), and 1 volume of phenol and 1/5 volume of chloroform-isoamyl alcohol (49: 1) are added. ), Mix and centrifuge. Aspirate the aqueous layer, add isopropanol (0.8 vol) and centrifuge the mixture to obtain RNA precipitate. The resulting RNA pellet was washed with 70% ethanol, dried and dissolved in water. Using 20 μ § RNA, electrophoresis was performed on a 1.2% agarose gel containing 20 mM 3- (N-morpholino) propanesulfonic acid (pH 7.0) -5 mM sodium acetate-ImM EDTA-2.2M formaldehyde. It was then transferred to a nitrocellulose membrane. Preparation 32 P- DNA probe labeled with a- 32 P dATP by random priming method. The DNA probe used was the human amyloid precursor protein-binding protein 9 coding region sequence (1602bp to 1853bp) amplified by PCR as shown in Figure 1. 0 32P-labeled probe (about 2 x 10 6 cpm / ml) Soluble with RNA-transferred nitrocellulose membrane 液 中 于 42。 In the liquid. C hybridization overnight, the solution contains 50% formamide-25mM KH 2 P0 4 (pH7.4)-5 x SSC-5 x Denhardt's solution and 200 g / ml salmon sperm DNA. After hybridization, the filters were placed in 1 x SSC-0.1% SDS at 55. C Wash for 30min. Then, Phosphor Imager was used for analysis and quantification. Example 4: In vitro expression, isolation and purification of recombinant human amyloid precursor protein binding protein 9
根据 SEQ ID N0: 1和图 1所示的编码区序列, 设计出一对特异性扩增引物, 序列 如下:  According to SEQ ID NO: 1 and the coding region sequence shown in FIG. 1, a pair of specific amplification primers was designed. The sequences are as follows:
Primer3: 5 -CCCCATATGATGAAGGTAGTTATTCCTGCCTGT-3' ( Seq ID No: 5 )  Primer3: 5 -CCCCATATGATGAAGGTAGTTATTCCTGCCTGT-3 '(Seq ID No: 5)
Primer4: 5'- CCCGAATTCTTATATAGACAGAAAATAGCTCCA- 3, ( Seq ID No: 6 ) 此两段引物的 5'端分别含有 Ndel和 BamHI酶切位点, 其后分别为目的基因 5'端和 Primer4: 5'- CCCGAATTCTTATATAGACAGAAAATAGCTCCA- 3, (Seq ID No: 6) The 5 'ends of these two primers contain Ndel and BamHI digestion sites, respectively, followed by the 5' end and
3 '端的编码序列, Nde I和 BamH I酶切位点相应于表达载体质粒 pET- 28 b (+) (Nova g en公 司产品, Cat. No.69865.3)上的选择性内切酶位点。 以含有全长目的基因的 pBS- 0135B04质粒为模板, 进行 PCR反应。 PCR反应条件为: 总体积 50 μ 1中含 pBS- 0135B04 质粒 10pg、 引物 Primer- 3和 Primer- 4分另1 J为 lOpmol、 Advantage polymerase Mix (Clontech公司产品) 1 μ 1。 循环参数: 94。C 20s, 60°C 30s, 68°C 2 min,共 25个循 环。 用 Ndel和 BamHI分别对扩增产物和质粒 pET-28(+)进行双酶切,分别回收大片段, 并用 T4连接酶连接。 连接产物转化用氯化钙法大肠杆细菌 DH5 CX ,在含卡那霉素 (终 浓度 30 g/ml ) 的 LB平板培养过夜后, 用菌落 PCR方法筛选阳性克隆, 并进行测序。 挑选序列正确的阳性克隆 ( pET-0135B04 ) 用氯化钙法将重组质粒转化大肠杆菌 BL21 (DE3)plySs (Novagen公司产品)。 在含卡那霉素 (终浓度 30 g/ml ) 的 LB液体培 养基中, 宿主菌 BL21 ( pET- 0135B04 ) 在 37。C培养至对数生长期, 加入 IPTG至终浓度 lmmol/L, 继续培养 5小时。 离心收集菌体, 经超声波破菌,离心收集上清, 用能与 6 个组氨酸 ( 6His- Tag ) 结合的亲和层析柱 His. Bind Quick Cartridge ( Novagen公司 产品) 进行层析, 得到了纯化的目的蛋白人淀粉类前体蛋白结合蛋白 9。 经 SDS - PAGE 电泳, 在 9kDa处得到一单一的条带 (图 2 ) 。 将该条带转移至 PVDF膜上用 Edams水解 法进行 N-端氨基酸序列分析, 结果 N-端 15个氨基酸与 SEQ ID NO: 2所示的 N-端 15个氨 基酸残基完全相同。 实施例 5 抗人淀粉类前体蛋白结合蛋白 9抗体的产生 At the 3 'end of the coding sequence, the Nde I and BamH I restriction sites correspond to the selective endonuclease sites on the expression vector plasmid pET-28 b (+) (Nova Gen, Cat. No. 69865.3). The pBS-0135B04 plasmid containing the full-length target gene was used as a template for the PCR reaction. The PCR reaction conditions are as follows: a total volume of 50 μl contains 10 pg of pBS- 0135B0 4 plasmid, primers Primer-3 and Primer-4, and 1 J is lOpmol, Advantage polymerase Mix (Clontech) 1 μ1. Cycle parameters: 94. C 20s, 60 ° C 30s, 68 ° C 2 min, a total of 25 cycles. Ndel and BamHI were used to double digest the amplified product and plasmid pET-28 (+), respectively, and large fragments were recovered and ligated with T4 ligase. The ligation product was transformed into the colibacillus DH5 CX by the calcium chloride method. After being cultured overnight on an LB plate containing kanamycin (final concentration 30 g / ml), positive clones were selected by colony PCR method and sequenced. A positive clone (pET-0135B04) with the correct sequence was selected, and the recombinant plasmid was transformed into E. coli BL21 (DE3) plySs (product of Novagen) using the calcium chloride method. In LB liquid medium containing kanamycin (final concentration 30 g / ml), the host strain BL21 (pET-0135B04) was at 37. C. Cultivate to logarithmic growth phase, add IPTG to a final concentration of 1 mmol / L, and continue to cultivate for 5 hours. The bacteria were collected by centrifugation, and the supernatant was collected by centrifugation. The supernatant was collected by centrifugation. The affinity chromatography column His. Bind Quick Cartridge (product of Novagen) was used to obtain 6 histidine (6His-Tag). The purified human starch precursor protein binding protein 9 was purified. After SDS-PAGE electrophoresis, a single band was obtained at 9 kDa (Figure 2). The band was transferred to a PVDF membrane and the N-terminal amino acid sequence was analyzed by the Edams hydrolysis method. As a result, the 15 amino acids at the N-terminus were identical to the 15 amino acid residues at the N-terminus shown in SEQ ID NO: 2. Example 5 Production of anti-human starch precursor protein binding protein 9 antibodies
用多肽合成仪 (PE公司产品) 合成下述人淀粉类前体蛋白结合蛋白 9特异性的多 肽:  The following peptides specific for human amyloid precursor protein binding protein 9 were synthesized using a peptide synthesizer (product of PE):
NH2-Met-Lys-Val-Val-Ile-Pro-Ala-Cys-Val-Ala-His-Leu-Phe-Thr-Lys- C00H (SEQ ID NO: 7)。 将该多肽分别与血蓝蛋白和牛血清白蛋白耦合形成复合, 方法参见: Avramea s , e t a 1. Immunochem i s t ry, 1969; 6: 43 0 用 4mg上述 l蓝蛋白 多肽复合物加上完全弗氏佐剂免疫家兔, 1 5天后再用血蓝蛋白多肽复合物加不完 全弗氏佐剂加强免疫一次。 采用经 1 5 g/m l牛血清白蛋白多肽复合物包被的滴定 板做 EL I SA测定兔血清中抗体的滴度。 用蛋白 A-Sepha ros e从抗体阳性的家兔血清 中分离总 I gG。 将多肽结合于溴化氰活化的 Sepha ros e4B柱上, 用亲和层析法从总 I gG中分离抗多肽抗体。 免疫沉淀法证明纯化的抗体可特异性地与人淀粉类前体 蛋白结合蛋白 9结合。 实施例 6: 本发明的多核苷酸片段用作杂交探针的应用 NH2-Met-Lys-Val-Val-Ile-Pro-Ala-Cys-Val-Ala-His-Leu-Phe-Thr-Lys- C00H (SEQ ID NO: 7). The peptide was coupled to hemocyanin and bovine serum albumin to form a complex. For the method, see: Avramea s, eta 1. Immunochemistry, 1969; 6: 43. 0 4 mg of the above-mentioned cyanin peptide complex plus complete Freund's The rabbits were immunized with the drug, and the immune response was enhanced with hemocyanin polypeptide complex and incomplete Freund's adjuvant once every 15 days. A titer plate coated with 15 g / ml bovine serum albumin peptide complex was used as EL I SA to determine the antibody titer in rabbit serum. Total IgG was isolated from antibody-positive rabbit serum using protein A-Sepha ros e. The peptide was bound to a cyanogen bromide-activated Sepha r os e4B column, and the anti-peptide antibody was separated from the total I gG by affinity chromatography. The immunoprecipitation method proved that the purified antibody could specifically bind to human amyloid precursor protein binding protein 9. Example 6: Application of the polynucleotide fragment of the present invention as a hybridization probe
从本发明的多核苷酸中挑选出合适的寡核苷酸片段用作杂交探针有多方面的用 途, 如用该探针可与不同来源的正常组织或病理组织的基因组或 cDNA 文库杂交以 鉴定其是否含有本发明的多核苷酸序列和检出同源的多核苷酸序列,进一步还可用 该探针检测本发明的多核苷酸序列或其同源的多核苷酸序列在正常组织或病理组织 细胞中的表达是否异常。  Suitable oligonucleotide fragments selected from the polynucleotides of the present invention are used as hybridization probes in various aspects. For example, the probes can be used to hybridize to genomic or cDNA libraries of normal tissue or pathological tissue from different sources to It is determined whether it contains the polynucleotide sequence of the present invention and a homologous polynucleotide sequence is detected. Further, the probe can be used to detect the polynucleotide sequence of the present invention or its homologous polynucleotide sequence in normal tissue or pathology. Whether the expression in tissue cells is abnormal.
本实施例的目的是从本发明的多核苷酸 SEQ ID NO: 1 中挑选出合适的寡核苷酸 片段用作杂交探针, 并用滤膜杂交方法鉴定一些组织中是否含有本发明的多核苷酸 序列或其同源的多核苷酸序列。 滤膜杂交方法包括斑点印迹法、 Southern 印迹法、 Nor thern 印迹法和复印方法等, 它们都是将待测的多核苷酸样品固定在滤膜上后使 用基本相同的步骤杂交。 这些相同的步骤是: 固定了样品的滤膜首先用不含探针的 杂交缓冲液进行预杂交, 以使滤膜上样品的非特异性的结合部位被载体和合成的多 聚物所饱和。 然后预杂交液被含有标记探针的杂交缓冲液替换, 并保温使探针与靶 核酸杂交。 杂交步骤之后, 未杂交上的探针被一系列洗膜步骤除掉。 本实施例利用 较高强度的洗膜条件 (如较低盐浓度和较高的温度), 以使杂交背景降低且只保留 特异性强的信号。 本实施例选用的探针包括两类: 第一类探针是完全与本发明的多 核苷酸 SEQ I D NO: 1 相同或互补的寡核苷酸片段; 第二类探针是部分与本发明的 多核苷酸 SEQ ID NO: 1 相同或互补的寡核苷酸片段。 本实施例选用斑点印迹法将 样品固定在滤膜上, 在较高强度的的洗膜条件下, 第一类探针与样品的杂交特异性 最强而得以保留。  The purpose of this embodiment is to select a suitable oligonucleotide fragment from the polynucleotide SEQ ID NO: 1 of the present invention as a hybridization probe, and to identify whether some tissues contain the polynucleoside of the present invention by a filter hybridization method. Acid sequence or a homologous polynucleotide sequence thereof. Filter hybridization methods include dot blotting, Southern blotting, Nor thern blotting, and copying methods, etc. They are all used to fix the polynucleotide sample to be tested on the filter and then hybridize using basically the same steps. These same steps are as follows: The sample-immobilized filter is first pre-hybridized with a probe-free hybridization buffer to saturate the non-specific binding site of the sample on the filter with the carrier and synthetic polymer. The pre-hybridization solution is then replaced with a hybridization buffer containing labeled probes and incubated to hybridize the probes to the target nucleic acid. After the hybridization step, the unhybridized probes are removed by a series of membrane washing steps. In this embodiment, higher-intensity washing conditions (such as lower salt concentration and higher temperature) are used to reduce the hybridization background and retain only strong specific signals. The probes used in this embodiment include two types: the first type of probes are oligonucleotide fragments that are completely the same as or complementary to the polynucleotide SEQ ID NO: 1 of the present invention; the second type of probes are partially related to the present invention The polynucleotide SEQ ID NO: 1 is the same or complementary oligonucleotide fragment. In this embodiment, the dot blot method is used to fix the sample on the filter membrane. Under the high-intensity washing conditions, the first type of probe and the sample have the strongest hybridization specificity and are retained.
一、 探针的选用 First, the selection of the probe
从本发明的多核苷酸 SEQ ID NO: 1 中选择寡核苷酸片段用作杂交探针, 应遵 循以下原则和需要考虑的几个方面: 1, 探针大小优选范围为 18- 50个核苷酸; The selection of oligonucleotide fragments from the polynucleotide SEQ ID NO: 1 of the present invention for use as hybridization probes should follow the following principles and several aspects to be considered: 1. The preferred range of probe size is 18-50 nucleotides;
2, GC含量为 30%- 70%, 超过则非特异性杂交增加;  2, GC content is 30% -70%, non-specific hybridization increases when it exceeds;
3, 探针内部应无互补区域;  3. There should be no complementary regions inside the probe;
4, 符合以上条件的可作为初选探针, 然后进一步作计算机序列分析, 包括将该初 选探针分别与其来源序列区域 (即 SEQ ID NO: 1 ) 和其它已知的基因组序列及 其互补区进行同源性比较, 若与非靶分子区域的同源性大于 85%或者有超过 15 个连续碱基完全相同, 则该初选探针一般就不应该使用;  4. Those that meet the above conditions can be used as primary selection probes, and then further computer sequence analysis, including the primary selection probe and its source sequence region (ie, SEQ ID NO: 1) and other known genomic sequences and their complements The regions are compared for homology. If the homology with the non-target molecular region is greater than 85% or there are more than 15 consecutive bases, then the primary probe should not be used;
5, 初选探针是否最终选定为有实际应用价值的探针还应进一步由实验确定。 5. Whether the preliminary selection probe is finally selected as a probe with practical application value should be further determined by experiments.
完成以上各方面的分析后挑选并合成以下二个探针:  After completing the above analysis, select and synthesize the following two probes:
探针 1 ( probel ), 属于第一类探针, 与 SEQ ID NO: 1 的基因片段完全同 源或互补 ( 41Nt ):  Probe 1 (probel), which belongs to the first type of probe, is completely homologous or complementary to the gene fragment of SEQ ID NO: 1 (41Nt):
5'-TGAAGGTAGTTATTCCTCCCTGTGTTGCCCACCTGTTCACA-3' ( SEQ ID NO: 8)  5'-TGAAGGTAGTTATTCCTCCCTGTGTTGCCCACCTGTTCACA-3 '(SEQ ID NO: 8)
探针 2 ( probe2 ), 属于第二类探针, 相当于 SEQ ID NO: 1 的基因片段或 其互补片段的替换突变序列 (41Nt ):  Probe 2 (probe2), which belongs to the second type of probe, is equivalent to the replacement mutant sequence of the gene fragment of SEQ ID NO: 1 or its complementary fragment (41Nt):
5 -TGAAGGTAGTTATTCCTGCCCGTGTTGCCCACCTGTTCACA-3' (SEQ ID NO: 9 ) 与以下具体实验步骤有关的其它未列出的常用试剂及其配制方法请参考文献: DNA PROBES G. H. Kel ler; M. M. Manak; Stockton Press, 1989 (USA)以及更常用的分 子克隆实验手册书籍如 《分子克隆实验指南》 U 998 年第二版) [美]萨姆布鲁克等 著, 科学出版社。  5 -TGAAGGTAGTTATTCCTGCCCGTGTTGCCCACCTGTTCACA-3 '(SEQ ID NO: 9) For other commonly used reagents and their preparation methods not related to the following specific experimental procedures, please refer to the literature: DNA PROBES GH Kel ler; MM Manak; Stockton Press, 1989 (USA ) And more commonly used molecular cloning experiment manual books such as "Molecular Cloning Experiment Guide" U 998 Second Edition) [US] Sambruck et al., Science Press.
样品制备:  Sample Preparation:
1 , 从新鲜或冰冻组织中提取 DNA  1.Extract DNA from fresh or frozen tissue
步骤: 1 ) 将新鲜或新鲜解冻的正常肝组织放入浸在冰上并盛有磷酸盐缓冲液 (PBS ) 的平皿中。 用剪刀或手术刀将组织切成小块。 操作中应保持组织湿润。 2 ) 以 lOOOg 离心切碎组织 10 分钟。 3 ) 用冷匀浆缓冲液 ( 0.25mol/L 蔗糖; 25瞧 ol/L Tris-HCl, pH7.5; 25隱 ol/LiiaCl; 25mmol/L MgCl2 ) 悬浮沉淀 (大约 10ml/g )0 4 ) 在 4°C用电动匀浆器以全速匀浆组织悬液, 直至组织被完全破碎。 5 ) 1000g离心 10 分钟。 6 ) 用重悬细胞沉淀 (每 0. Ig 最初组织样品加 l-5ml ), 再以 1000g 离心 10 分钟。 7 ) 用裂解缓冲液重悬沉淀 (每 O. lg最初组织样品加 lml ), 然后接以下的苯 酚抽提法。 Steps: 1) Place fresh or freshly thawed normal liver tissue in a plate immersed in ice and filled with phosphate buffered saline (PBS). Cut the tissue into small pieces with scissors or a scalpel. Keep tissue moist during operation. 2) Centrifuge the tissue at 1,000 g for 10 minutes. 3) Use cold homogenate buffer (0.25mol / L sucrose; 25 ol / L Tris-HCl, pH7.5; 25 crypto ol / LiiaCl; 25mmol / L MgCl 2 ) suspension pellet (about 10ml / g) 0 4 ) Homogenize the tissue suspension at 4 ° C at full speed with an electric homogenizer until the tissue is completely broken. 5) Centrifuge at 1000g for 10 minutes. 6) Resuspend the cell pellet (l-5ml per 0.1g of the original tissue sample), and centrifuge at 1000g for 10 minutes. 7) Resuspend the pellet in lysis buffer (1 ml per 0.1 g of the initial tissue sample), and then follow the phenol extraction method below.
2, DNA的苯酚抽提法 2, phenol extraction method for DNA
步骤: 1 ) 用 l-10nil 冷 PBS 洗细胞, lOOOg 离心 10分钟。 2 ) 用冷细胞裂解液 重悬浮沉淀的细胞 ( 1 108细胞 /ml ) 最少应用 lOOul 裂解缓冲液。 3 ) 加 SDS 至终 浓度为 1%, 如果在重悬细胞之前将 SDS直接加入到细胞沉淀中, 细胞可能会形成大 的团块而难以破碎, 并降低的总产率。 这一点在抽提 >107细胞时特别严重。 4 ) 加 蛋白酶 K至终浓度 200ug/ml。 5 ) 50。C保温反应 1小时或在 37°C轻轻振摇过夜。 6 ) 用等体积苯酚: 氯仿: 异戊醇 (25: 24: 1 ) 抽提, 在小离心机管中离心 10 分钟。 两相应清楚分离, 否则重新进行离心。 7 ) 将水相转移至新管。 8 ) 用等体积氯仿: 异戊醇(24: 1 )抽提, 离心 10分钟。 9 )将含 DNA的水相转移至新管。 然后进行 DM 的纯化和乙醇沉淀。 Steps: 1) Wash cells with l-10nil cold PBS and centrifuge at 1000g for 10 minutes. 2) with cold cell lysate pelleted cells were resuspended (1 108 cells / ml) Minimum application lOOul lysis buffer. 3) Add SDS to the end The concentration is 1%. If SDS is added directly to the cell pellet before resuspending the cells, the cells may form large clumps that are difficult to break, and reduce the overall yield. This is particularly serious when extracting> 10 7 cells. 4) Add proteinase K to a final concentration of 200ug / ml. 5) 50. C. Incubate for 1 hour or shake gently at 37 ° C overnight. 6) Extract with an equal volume of phenol: chloroform: isoamyl alcohol (25: 24: 1) and centrifuge in a small centrifuge tube for 10 minutes. The two should be clearly separated, otherwise centrifuge again. 7) Transfer the water phase to a new tube. 8) Extract with an equal volume of chloroform: isoamyl alcohol (24: 1) and centrifuge for 10 minutes. 9) Transfer the DNA-containing aqueous phase to a new tube. Purification of DM and ethanol precipitation were then performed.
3, DNA的纯化和乙醇沉淀 3, DNA purification and ethanol precipitation
步骤: 1 ) 将 1/10体积 2mol/L醋酸钠和 2倍体积冷 100%乙醇加到 DNA溶液中, 混匀。 在- 20°C放置 1小时或至过夜。 2 ) 离心 10分钟。 3 ) 小心吸出或倒出乙醇。 4 ) 用 70%冷乙醇 500ul 洗涤沉淀, 离心 5分钟。 5 ) 小心吸出或倒出乙醇。 用 500ul 冷乙醇洗涤沉淀, 离心 5 分钟。 6 ) 小心吸出或倒出乙醇, 然后在吸水纸上倒置使 残余乙醇流尽。 空气干燥 10-15 分钟, 以使表面乙醇挥发。 注意不要使沉淀完全干 燥, 否则较难重新溶解。 7 ) 以小体积 TE或水重悬 DNA沉淀。 低速涡旋振荡或用滴 管吹吸, 同时逐渐增加 TE, 混合至 舰 充分溶解, 每 1-5 X 10δ细胞所提取的大约 加 1 u 1。 Steps: 1) Add 1/10 volume of 2mol / L sodium acetate and 2 volumes of cold 100% ethanol to the DNA solution and mix. Leave at -20 ° C for 1 hour or overnight. 2) Centrifuge for 10 minutes. 3) Carefully aspirate or pour out the ethanol. 4) Wash the pellet with 500ul of 70% cold ethanol and centrifuge for 5 minutes. 5) Carefully aspirate or pour out the ethanol. Wash the pellet with 500ul of cold ethanol and centrifuge for 5 minutes. 6) Carefully aspirate or pour out the ethanol, then invert on the absorbent paper to drain off the residual ethanol. Air dry for 10-15 minutes to allow the surface ethanol to evaporate. Be careful not to allow the pellet to dry completely, otherwise it will be more difficult to re-dissolve. 7) Resuspend the DNA pellet in a small volume of TE or water. Vortex at low speed or suck with a dropper, and gradually increase TE, mix until the vessel is fully dissolved, and add approximately 1 u 1 for each 1-5 X 10 δ cells.
以下第 8-13步骤仅用于必须除去污染时, 否则可直接进行第 14步骤。  The following steps 8-13 are only used when contamination must be removed, otherwise step 14 can be performed directly.
8 ) 将 RNA酶 Α加到 DNA溶液中, 终浓度为 100ug/ml, 37 C保温 30分钟。 9 ) 加入 SDS 和蛋白酶 K, 终浓度分别为 0.5%和 100ug/ml。 37。C保温 30 分钟。 10 ) 用等体 积的苯酚: 氯仿: 异戊醇 ( 25: 24: 1 ) 抽提反应液, 离心 10 分钟。 11 ) 小心移出 水相, 用等体积的氯仿: 异戊醇 ( 24: 1 ) 重新抽提, 离心 10 分钟。 12 ) 小心移出 水相, 加 1/10体积 2mol/L醋酸钠和 2.5体积冷乙醇, 混匀置 - 20。C 1 小时。 13 ) 用 70%乙醇及 100%乙醇洗涤沉淀, 空气干燥, 重悬核酸, 过程同第 3-6 步骤。 14 ) 测定 A26。和 A28。以检测 DNA的纯度及产率。 15 ) 分装后存放于 - 20°C。 8) Add RNase A to the DNA solution to a final concentration of 100 ug / ml, and incubate at 37 C for 30 minutes. 9) Add SDS and proteinase K to the final concentration of 0.5% and 100ug / ml. 37. C incubate for 30 minutes. 10) Extract the reaction solution with an equal volume of phenol: chloroform: isoamyl alcohol (25: 24: 1) and centrifuge for 10 minutes. 11) Carefully remove the aqueous phase, re-extract with an equal volume of chloroform: isoamyl alcohol (24: 1), and centrifuge for 10 minutes. 12) Carefully remove the water phase, add 1/10 volume of 2mol / L sodium acetate and 2.5 volumes of cold ethanol, mix well and set to -20. C for 1 hour. 13) Wash the precipitate with 70% ethanol and 100% ethanol, air dry, and resuspend the nucleic acid. The process is the same as steps 3-6. 14) Measure A 26 . And A 28 . To detect the purity and yield of DNA. 15) Store at -20 ° C after dispensing.
样膜的制备: Preparation of sample film:
1 ) 取 4 x 2 张适当大小的硝酸纤维素膜 (NC 膜), 用铅笔在其上轻轻标出点样位 置及样号, 每一探针需两张 NC 膜, 以便在后面的实验步骤中分别用高强度条件和 强度条件洗膜 。  1) Take 4 x 2 pieces of nitrocellulose membranes (NC membranes) of appropriate size, and mark the spotting position and sample number on it with a pencil. Two NC membranes are required for each probe for subsequent experiments. In the step, the film is washed with high-strength conditions and strength conditions, respectively.
2 ) 吸取及对照各 15微升, 点于样膜上, 在室温中晾干。  2) Aspirate and control 15 microliters each, spot on the sample film, and dry at room temperature.
3 ) 置于浸润有 0. Imol/LNaOH, 1.5mol/LNaCl 的滤纸上 5分钟 (两次), 晾干置于 浸润有 0.5mol/L Tris-HCl ( pH7.0 ), 3mol/LNaCl的滤纸上 5分钟 (两次 ), 晾干。  3) Place on filter paper impregnated with 0.1 mol / L NaOH, 1.5 mol / L NaCl for 5 minutes (twice), dry and place on filter paper impregnated with 0.5 mol / L Tris-HCl (pH 7.0), 3 mol / L NaCl Allow to dry for 5 minutes (twice).
4 ) 夹于干净滤纸中, 以铝箔包好, 60-80。C真空干燥 2小时。 探针的标记 4) Clamp in clean filter paper and wrap with aluminum foil, 60-80. C was dried under vacuum for 2 hours. Labeling of probes
1 ) 3 μ IProbe ( 0. IOD/Ιθμ 1 ), 加入 2 μ IKinase缓冲液, 8-10 uCi γ- 32P- dATP+2U Kinase, 以补加至终体积 20 μ 1。 1) 3 μ IProbe (0.1 IOD / Ιθμ 1), add 2 μ IKinase buffer, 8-10 uCi γ- 32 P- dATP + 2U Kinase, to make up to a final volume of 20 μ 1.
2 ) 37 °C 保温 1小时。  2) Incubate at 37 ° C for 1 hour.
3) 加 1/5体积的溴酚蓝指示剂 (BPB)。  3) Add 1/5 volume of Bromophenol Blue Indicator (BPB).
4 ) 过 Sephadex G-50柱。  4) Pass through a Sephadex G-50 column.
5 ) 至有 32P-Pr0be洗出前开始收集第一峰 (可用 Monitor监测 )。 5) Start to collect the first peak before 32 P-Pr 0 be washed out (can be monitored by Monitor).
6) 5滴 /管, 收集 10-15管。  6) 5 drops / tube, collect 10-15 tubes.
7 ) 用液体闪烁仪监测同位素量  7) Monitor the amount of isotope with a liquid scintillator
8 ) 合并第一峰的收集液后即为所需制备的 32P-Probe (第二峰为游离 y-32P-dATP )。 预杂交 8) After combining the collection solutions of the first peak, the 32 P-Probe (the second peak is free y - 32 P-dATP) is prepared. Pre-hybridization
将样膜置于塑料袋中, 加入 3- lOmg预杂交液( lOxDenhardt's; 6xSSC, 0. lmg/ml CT DNA (小牛胸腺 DNA)。), 封好袋口后, 68°C水浴摇 2小时。  Put the sample membrane in a plastic bag, add 3- lOmg pre-hybridization solution (lOxDenhardt's; 6xSSC, 0.1 mg / ml CT DNA (calf thymus DNA).), Seal the bag, and shake at 68 ° C for 2 hours .
杂交  Cross
将塑料袋剪去一角, 加入制备好的探针, 封好袋口后, 42('C水洛摇过夜。 The plastic bag corner cut, prepared probe was added, after the sealed bag, 42 ( 'C Los water shaking overnight.
洗膜:  Wash film:
高强度洗膜:  High-intensity washing film:
1 ) 取出已杂交好的样膜。  1) Take out the hybridized sample membrane.
2 ) 2xSSC, 0.1%SDS中, 40°C洗 15分钟 ( 2次)。  2) 2xSSC, 0.1% SDS, wash at 40 ° C for 15 minutes (twice).
3 ) 0. lxSSC, 0.1%SDS中 , 40°C洗 15分钟 ( 2次)。  3) 0.1xSSC, 0.1% SDS, wash at 40 ° C for 15 minutes (twice).
4 ) 0. IxSSC, 0.1%SDS中, 55('C洗 30分钟 ( 2次), 室温晾干。 低强度洗膜: 4) 0. IxSSC, 0.1% SDS, 55 ( washed for 30 minutes (2 times), and dried at room temperature. Low-intensity washing film:
1 ) 取出已杂交好的样膜。  1) Take out the hybridized sample membrane.
2 ) 2xSSC, 0.1%SDS中, 37。C洗 15分钟 ( 2次)。  2) 2xSSC, 0.1% SDS, 37. C Wash for 15 minutes (twice).
3 ) 0. IxSSC, 0.1%SDS中, 37。C洗 15分钟 ( 2次)。  3) 0. IxSSC, 0.1% SDS, 37. C Wash for 15 minutes (twice).
4 ) 0. IxSSC, 0.1%SDS中, 40。C洗 15分钟 ( 2次), 室温晾干。  4) 0. IxSSC, 0.1% SDS, 40. Wash for 15 minutes (twice) and dry at room temperature.
X -光自显影: X-ray autoradiography:
-70°C, X-光自显影 (压片时间根据杂交斑放射性强弱而定)。  -70 ° C, X-ray autoradiography (pressing time depends on the radioactivity of the hybrid spot).
实验结果:  Experimental results:
釆用低强度洗膜条件所进行的杂交实验, 以上两个探针杂交斑放射性强弱没有 明显区别; 而采用高强度洗膜条件所进行的杂交实验, 探针 1 的杂交斑放射性强度 明显强于另一个探针杂交斑的放射性强度。 因而可用探针 1 定性和定量地分析本发 明的多核苷酸在不同组织中的存在和差异表达。 的 Hybridization experiments using low-intensity washing conditions, the radioactivity of the hybrid spots of the above two probes is not strong. The difference is obvious; and in the hybridization experiment using high-intensity washing conditions, the radioactive intensity of the hybrid spot of probe 1 is significantly stronger than that of the hybrid spot of the other probe. Therefore, probe 1 can be used to qualitatively and quantitatively analyze the presence and differential expression of the polynucleotide of the present invention in different tissues.
实施例 7 DNA Microarray Example 7 DNA Microarray
基因芯片或基因微矩阵 (DNA Microarray )是目前许多国家实验室和大制药公 司都在着手研制和开发的新技术, 它是指将大量的靶基因片段有序地、 高密度地排 列在玻璃、 硅等载体上, 然后用荧光检测和计算机软件进行数据的比较和分析, 以 Gene microarrays or DNA microarrays are new technologies currently being developed by many national laboratories and large pharmaceutical companies. It refers to the orderly and high-density arrangement of a large number of target gene fragments on glass, Silicon and other carriers, and then use fluorescence detection and computer software to compare and analyze data to
10 达到快速、 高效、 高通量地分析生物信息的目的。 本发明的多核苷酸可作为靶 DNA 用于基因芯片技术用于高通量研究新基因功能; 寻找和筛选组织特异性新基因特别 是肿瘤等疾病相关新基因; 疾病的诊断, 如遗传性疾病。 其具体方法步骤在文献中 已有多种报道, 如可参阅文献 DeRisi, J. L. , Lyer, V. &Brown, P.0. 10 To achieve the purpose of fast, efficient and high-throughput analysis of biological information. The polynucleotide of the present invention can be used as target DNA for gene chip technology for high-throughput research of new gene functions; search for and screen new tissue-specific genes, especially new genes related to diseases such as tumors; diagnosis of diseases such as hereditary diseases . The specific method steps have been reported in the literature. For example, see DeRisi, J. L., Lyer, V. & Brown, P.0.
(1997) Science278, 680-686.及文献 Hel le, R. A. , Schema, M. , Chai, A. , Shalom, D., (1997) Science 278, 680-686. And literature Hel le, R. A., Schema, M., Chai, A., Shalom, D.,
15 (1997) PNAS 94: 2150-2155. 15 (1997) PNAS 94: 2150-2155.
(一) 点样  (A) spotting
各各种种不不同同的的全全长长 ccDDNNAA共共计计 44000000条条多多核核苷苷酸酸序序列列作作为为靶靶 DDNNAA,,其其中中包包括括本本发发明明的的 多多核核苷苷酸酸。。 将将它它们们分分别别通通过过 PPCCRR 进进行行扩扩增增,, 纯纯化化所所得得扩扩增增产产物物后后将将其其浓浓度度调调到到 550000nngg//uull 左左右右,, 用用 CCaarrtteessiiaann 77550000 点点样样仪仪((购购自自美美国国 CCaarrtteessiiaann公公司司))点点于于玻玻璃璃介介 2200 质质上上,, 点点与与点点之之间间的的距距离离为为 228800 μμηηιι。。 将将点点样样后后的的玻玻片片进进行行水水合合、、 干干燥燥、、 置置于于紫紫外外交交 联联仪仪中中交交联联,, 洗洗脱脱后后干干燥燥使使 DDNNAA 固固定定在在玻玻璃璃片片上上制制备备成成芯芯片片。。 其其具具体体方方法法步步骤骤在在文文 献献中中已已有有多多种种报报道道,, 本本实实施施例例的的点点样样后后处处理理步步骤骤是是::  A variety of different full-length ccDDNNAAs with a total length of 44 million polynucleotide sequences are listed as the target DDNNAA, which includes the Multi-polynucleotide. . They will be separately expanded and amplified through PPCCRR. After pure purification, the expansion and amplification products obtained will be adjusted to a concentration of 550000nngg // uull. Right and left, use a CCaarrtteessiiaann 77550000 spot sampler (purchased from CCaarrtteessiiaann Corporation of the United States) on the glass glass medium 2200 quality, between the point and the point The distance is 228800 μμηι. . The glass slides after the spotting are hydrated, dried, and placed in a violet ultraviolet cross-linking instrument for cross-linking. After washing and eluting, Dry and dry to make DDNNAA fixed on glass slides to prepare core chips. . Its specific method and method steps have been reported in the literature, and many reports have been reported. The actual implementation of the examples in the present embodiment is followed by processing steps. ::
11.. 潮潮湿湿环环境境中中水水合合 44小小时时;;  11. Hydration and hydration in the humid and humid environment for 44 hours;
22.. 00..22%%SSDDSS洗洗涤涤 11分分钟钟;; 22 .. 00..22 %% SSDDSS washing and washing for 11 minutes;
Figure imgf000019_0001
Figure imgf000019_0001
4. NaBH4封闭 5分钟; 4. NaBH 4 is blocked for 5 minutes;
5. 95°C水中 2分钟;  5. 95 ° C water for 2 minutes;
6. 0.2%SDS洗涤 1分钟;  6. Wash with 0.2% SDS for 1 minute;
7. ddH20冲洗两次; 7. Rinse twice with ddH 2 0;
8. 凉干, 25。C储存于暗处备用。  8. Dry dry, 25. C Store in a dark place for future use.
(二)探针标记  (Two) probe marking
用一步法分别从人体混合组织与机体特定组织 (或经过刺激的细胞株) 中抽 提总 mRNA, 并用 Oligotex mRNA Midi Kit (购自 QiaGen公司)纯化 mRNA,通过反转 录分另!将焚光试刻 Cy3dUTP (5-Amino-propargy 1-2' -deoxyuri dine 5'-tr iphate coupled to Cy3 fluorescent dye, 购自 Amersham Phamacia Biotech公司)标记人 体混合组织的 mRNA, 用荧光试剂 Cy5dUTP (5-Amino-propargy 1-2- -deoxyuridine 5"— tr iphate coupled to Cy5 fluorescent dye, 购自 Amersham Phamacia Biotech公 司)标记机体特定组织 (或经过刺激的细胞株) niRNA, 经纯化后制备出探针。 具体 步骤参照及方法见: One-step extraction from the human mixed tissue and the body's specific tissue (or stimulated cell lines) Total mRNA was extracted and purified using Oligotex mRNA Midi Kit (purchased from QiaGen), and separated by reverse transcription! Cy3dUTP (5-Amino-propargy 1-2 '-deoxyuri dine 5'-tr iphate coupled to Cy3 fluorescent dye, purchased from Amersham Phamacia Biotech) labeled mRNA of human mixed tissues, with Cy5dUTP (5-Amino-propargy 1-2- -deoxyuridine 5 "-tr iphate coupled to Cy5 fluorescent dye, purchased from Amersham Phamacia Biotech company) labeled niRNA in specific tissues (or stimulated cell lines) of the body, and prepared probes after purification. For specific steps and methods, see:
Schena, M., Shalon, D. , Heller, R. (1996) Proc. Natl. Acad. Sci. USA. Vol.93: 10614- 10619. Schena, M. , Shalon, Dari. , Davis, R. W. (1995) Science.270. (20) : 467-480. (三) 杂交  Schena, M., Shalon, D., Heller, R. (1996) Proc. Natl. Acad. Sci. USA. Vol. 93: 10614- 10619. Schena, M., Shalon, Dari., Davis, RW (1995 ) Science.270. (20): 467-480. (3) Hybridization
分别将来自 以上两种组织的探针与芯片一起在 UniHyb™ Hybridization Solution (购自 TeleChem 公司)杂交液中进行杂交 16 小时, 室温用洗涤液 ( 1 x SSC, 0.2%SDS ) 洗涤后用 ScanArray 3000扫描仪 (购自美国 General Scanning公司 ) 进行扫描, 扫描的图象用 Iniagene 软件 (美国 Biodi scovery 公司) 进行数据分析 处理, 算出每个点的 Cy3/Cy5 比值。  Probes from the above two types of tissues were hybridized with the chip in a UniHyb ™ Hybridization Solution (purchased from TeleChem) for 16 hours, washed with a washing solution (1 x SSC, 0.2% SDS) at room temperature, and then scanned with ScanArray 3000. The scanner (purchased from General Scanning Company, USA) was used for scanning. The scanned image was analyzed and processed with Iniagene software (Biodicovery Company, USA) to calculate the Cy3 / Cy5 ratio of each point.
以上机体特定组织 (或经过刺激的细胞株) 分别为胸腺、 睾丸、 肌肉、 脾脏、 肺、 皮肤、 甲状腺、 肝、 PMA+的 Ecv304细胞株、 PMA -的 Ecv304细胞株、 未饥饿的 L02 细胞株、 砷刺激 1小时的 L02细胞株、 砷刺激 6小时的 L02细胞株前列腺、 心、 肺癌、 胎膀胱、 胎小肠、 胎大肠、 胎胸腺、 胎肌、 胎肝、 胎肾、 胎脾、 胎脑、 胎肺以及胎 心。 根据这 26个 Cy3/Cy5比值绘出折方图。 (图 1 ) 。 由图可见本发明所述的人淀粉 类前体蛋白结合蛋白 9和人淀粉类前体蛋白结合蛋白 13表达谱很相似。 工业实用性  The above specific tissues (or stimulated cell lines) are thymus, testis, muscle, spleen, lung, skin, thyroid, liver, PMA + Ecv304 cell line, PMA-Ecv304 cell line, non-starved L02 cell line, L02 cell line stimulated by arsenic for 1 hour, L02 cell line stimulated by arsenic for 6 hours prostate, heart, lung cancer, fetal bladder, fetal small intestine, fetal large intestine, fetal thymus, fetal muscle, fetal liver, fetal kidney, fetal spleen, fetal brain, Fetal lung and fetal heart. Draw a graph based on these 26 Cy3 / Cy5 ratios. (figure 1 ) . It can be seen from the figure that the expression profiles of human amyloid precursor protein binding protein 9 and human amyloid precursor protein binding protein 13 according to the present invention are very similar. Industrial applicability
本发明的多肽以及该多肽的拮抗剂、 激动剂和抑制剂可直接用于疾病治疗, 例如, 可治疗恶性肿瘤、 肾上腺缺乏症、 皮肤病、 各类炎症、 HIV 感染和免疫性 疾病等。  The polypeptide of the present invention and the antagonists, agonists and inhibitors of the polypeptide can be directly used in the treatment of diseases, for example, it can treat malignant tumors, adrenal deficiency, skin diseases, various inflammations, HIV infections and immune diseases.
β -淀粉类前体蛋白 (ΑΡΡ)经加工可形成可溶性蛋白水解产物 β淀粉类小体。 ΑΡΡ 在蛋白运输中起到一定的物质转运的作用。 例如, 将 ΑΡΡ 的 YENPTY 序列切 除就会影响细胞表面的 APP的内吞作用, 还会使 APP在没有到达细胞表面之前就 进入细胞内途径, 从而打乱了细胞内物质的运输。 研究发现, 当 APP 发生 AD相 关的突变时, 会导致 AP分泌的增加, 或者 ΑΡ,^/ΑΡ ^的比值发生变化。 并且脑 内的 β淀粉类小体增多与阿尔兹海默氏症 ( Alzheimer disease ) 密切相关。 也 发现 APP的作用与几种细胞因子如 FE65蛋白有关。 β-amyloid precursor protein (APP) can be processed to form soluble amyloid β amyloid. APP plays a certain role in the transport of proteins. For example, excision of the YENPTY sequence of AP will affect the endocytosis of APP on the cell surface, and also allow APP to enter the intracellular pathway before reaching the cell surface, thereby disrupting the transport of intracellular material. Studies have found that when APP-related AD mutations occur, AP secretion can increase, or the ratio of AP, ^ / AP ^ changes. And the increase of beta amyloid bodies in the brain is closely related to Alzheimer's disease (Alzheimer disease). and also It was found that the role of APP is related to several cytokines such as FE65 protein.
本发明的多肽的表达谱与人 β -淀粉类前体蛋白的表达谱相一致, 两者具有 相似的生物学功能。 它在体内主要参与细胞吞饮与出胞运输, 其表达异常通常与 一些相关的物质代谢紊乱性疾病、 蛋白代谢紊乱性疾病及相关组织的肿瘤及癌症 等疾病的发生密切相关, 如阿尔兹海默氏症。  The expression profile of the polypeptide of the present invention is consistent with the expression profile of human β-amyloid precursor protein, and both have similar biological functions. It is mainly involved in cell swallowing and exocytosis in the body, and its abnormal expression is usually closely related to the occurrence of some related disorders of material metabolism, disorders of protein metabolism, and related tissue tumors and cancers, such as the Alzheimer's Moore's disease.
由此可见, 本发明的人淀粉类前体蛋白结合蛋白 9 的表达异常将产生各种疾 病尤其是阿尔兹海默氏症、 各种肿瘤、 胚胎发育紊乱症、 生长发育障碍性疾病、 炎症、 免疫性疾病, 这些疾病包括但不限于:  It can be seen that the abnormal expression of the human amyloid precursor protein binding protein 9 of the present invention will produce various diseases, especially Alzheimer's disease, various tumors, embryonic developmental disorders, growth disorders, inflammation, Immune diseases, including but not limited to:
各种组织的肿瘤: 胃癌, 肝癌, 肺癌, 食管癌, 乳腺癌, 白血病, 淋巴瘤, 甲状腺肿瘤, 子宫肌瘤, 神经细胞瘤, 星形细胞瘤, 室管膜瘤, 胶质细胞瘤, 神经纤维瘤, 结肠癌, 黑色素瘤, 膀胱癌, 子宫癌, 子宫内膜癌, 结肠癌, 胸 腺肿瘤, 鼻咽癌, 喉癌, 气管肿瘤, 纤维瘤, 纤维肉瘤, 脂肪瘤, 脂肪肉瘤  Tumors of various tissues: stomach cancer, liver cancer, lung cancer, esophageal cancer, breast cancer, leukemia, lymphoma, thyroid tumor, uterine fibroids, neuroblastoma, astrocytoma, ependymoma, glioblastoma, nerve Fibroma, colon cancer, melanoma, bladder cancer, uterine cancer, endometrial cancer, colon cancer, thymic tumor, nasopharyngeal cancer, laryngeal cancer, tracheal tumor, fibroid, fibrosarcoma, lipoma, liposarcoma
胚胎发育紊乱症: 先天性流产, 腭裂, 肢体缺如, 肢体分化障碍, 房间隔缺 损, 神经管缺陷, 先天性脑积水, 先天性青光眼或白内障, 先天性耳聋  Fetal developmental disorders: congenital abortion, cleft palate, limb loss, limb differentiation disorder, atrial septal defect, neural tube defect, congenital hydrocephalus, congenital glaucoma or cataract, congenital deafness
生长发育障碍性疾病: 精神发育迟缓, 脑发育障碍, 皮肤、 脂肪和肌肉发育 不良性疾病, 骨与关节发育不良性疾病, 各种代谢缺陷病, 呆小症, 侏儒症, 库兴综合这征, 性发育迟缓症  Growth and development disorders: mental retardation, brain development disorders, skin, fat, and muscular dysplasia, bone and joint dysplasia, various metabolic defects, stunting, dwarfism, Cushing's syndrome Sexual retardation
炎症: 慢性活动性肝炎, 结节病, 多肌炎, 慢性鼻炎, 慢性胃炎, 脑脊髓多 发性硬化, 肾小球性肾炎, 心肌炎, 心肌病, 动脉粥样硬化, 胃溃疡, 子宫颈 炎, 各种感染性炎症  Inflammation: chronic active hepatitis, sarcoidosis, polymyositis, chronic rhinitis, chronic gastritis, cerebrospinal multiple sclerosis, glomerulonephritis, myocarditis, cardiomyopathy, atherosclerosis, gastric ulcer, cervicitis, Various infectious inflammations
免疫性疾病: 系统性红斑狼疮, 类风湿性关节炎, 支气管哮喘, 荨麻疹, 特 异性皮炎, 感染后心肌炎, 硬皮病, 重症肌无力, 格林-巴利综合症, 普通易变 免疫缺陷病, 原发性 Β淋巴细胞免疫缺陷病, 获得性免疫缺陷综合症  Immune diseases: Systemic lupus erythematosus, rheumatoid arthritis, bronchial asthma, urticaria, specific dermatitis, post-infection myocarditis, scleroderma, myasthenia gravis, Guillain-Barre syndrome, common variable immunodeficiency disease , Primary B lymphocyte immunodeficiency disease, Acquired immunodeficiency syndrome
本发明的人淀粉类前体蛋白结合蛋白 9 的表达异常还将产生某些遗传性, 血液 性疾病等。  Abnormal expression of the human amyloid precursor protein-binding protein 9 of the present invention will also produce certain hereditary, hematological diseases, and the like.
本发明的多肽以及该多肽的拮抗剂、 激动剂和抑制剂可直接用于疾病治疗, 例如, 可治疗各种疾病尤其是阿尔兹海默氏症、 各种肿瘤、 胚胎发育紊乱症、 生 长发育障碍性疾病、 炎症、 免疫性疾病, 某些遗传性, 血液性疾病等。  The polypeptide of the present invention and the antagonists, agonists and inhibitors of the polypeptide can be directly used in the treatment of diseases, for example, it can treat various diseases, especially Alzheimer's disease, various tumors, embryonic development disorders, growth and development. Obstructive diseases, inflammation, immune diseases, certain hereditary, blood diseases, etc.
本发明也提供了筛选化合物以鉴定提高(激动剂)或阻遏(拮抗剂)人淀粉类前 体蛋白结合蛋白 9 的药剂的方法。 激动剂提高人淀粉类前体蛋白结合蛋白 9刺激 细胞增殖等生物功能, 而拮抗剂阻止和治疗与细胞过度增殖有关的紊乱如各种癌 症。 例如, 能在药物的存在下, 将哺乳动物细胞或表达人淀粉类前体蛋白结合蛋 白 9 的膜制剂与标记的人淀粉类前体蛋白结合蛋白 9 一起培养。 然后测定药物提 高或阻遏此相互作用的能力。 The invention also provides methods for screening compounds to identify agents that increase (agonist) or suppress (antagonist) human starch precursor protein binding protein 9. Agonists enhance biological functions such as human amyloid precursor protein binding protein 9 to stimulate cell proliferation, and antagonists prevent and treat disorders related to excessive cell proliferation, such as various cancers. For example, mammalian cells or human starch precursor protein-binding proteins can be bound in the presence of drugs Membrane formulations of White 9 were cultured with labeled human amyloid precursor protein binding protein 9. The ability of the drug to increase or block this interaction is then determined.
人淀粉类前体蛋白结合蛋白 9 的拮抗剂包括筛选出的抗体、 化合物、 受体缺 失物和类似物等。 人淀粉类前体蛋白结合蛋白 9 的拮抗剂可以与人淀粉类前体蛋 白结合蛋白 9 结合并消除其功能, 或是抑制该多肽的产生, 或是与该多肽的活性 位点结合使该多肽不能发挥生物学功能。  Antagonists of human amyloid precursor protein binding protein 9 include screened antibodies, compounds, receptor deletions, and the like. Antagonists of human amyloid precursor protein binding protein 9 can bind to human amyloid precursor protein binding protein 9 and eliminate its function, or inhibit the production of the polypeptide, or bind to the active site of the polypeptide to make the polypeptide Cannot perform biological functions.
在筛选作为拮抗剂的化合物时, 可以将人淀粉类前体蛋白结合蛋白 9 加入生 物分析测定中, 通过测定化合物对人淀粉类前体蛋白结合蛋白 9 和其受体之间相 互作用的影响来确定化合物是否是拮抗剂。 用上述筛选化合物的同样方法, 可以 筛选出起拮抗剂作用的受体缺失物和类似物。 能与人淀粉类前体蛋白结合蛋白 9 结合的多肽分子可通过筛选由各种可能组合的氨基酸结合于固相物组成的随机多 肽库而获得。 筛选时, 一般应对人淀粉类前体蛋白结合蛋白 9分子进行标记。  When screening compounds as antagonists, human amyloid precursor protein-binding protein 9 may be added to a bioanalytical assay by measuring the effect of the compound on the interaction between human amyloid precursor protein-binding protein 9 and its receptor. Determine if the compound is an antagonist. Receptor deletions and analogs that act as antagonists can be screened in the same manner as described above for screening compounds. Polypeptide molecules capable of binding to human amyloid precursor protein binding protein 9 can be obtained by screening a random peptide library composed of various possible combinations of amino acids bound to a solid phase. During screening, 9 molecules of human amyloid precursor protein binding protein should generally be labeled.
本发明提供了用多肽, 及其片段、 衍生物、 类似物或它们的细胞作为抗原以 生产抗体的方法。 这些抗体可以是多克隆抗体或单克隆抗体。 本发明还提供了针 对人淀粉类前体蛋白结合蛋白 9 抗原决定簇的抗体。 这些抗体包括(但不限于): 多克隆抗体、 单克隆抗体、 嵌合抗体、 单链抗体、 Fab 片段和 Fab 表达文库产生 的片段。  The present invention provides a method for producing an antibody using a polypeptide, a fragment, a derivative, an analog thereof, or a cell thereof as an antigen. These antibodies can be polyclonal or monoclonal antibodies. The present invention also provides antibodies directed against human amyloid precursor protein binding protein 9 epitopes. These antibodies include (but are not limited to): polyclonal antibodies, monoclonal antibodies, chimeric antibodies, single-chain antibodies, Fab fragments, and fragments from Fab expression libraries.
多克隆抗体的生产可用人淀粉类前体蛋白结合蛋白 9 直接注射免疫动物 (如 家兔, 小鼠, 大鼠等) 的方法得到, 多种佐剂可用于增强免疫反应, 包括但不限 于弗氏佐剂等。 制备人淀粉类前体蛋白结合蛋白 9 的单克隆抗体的技术包括但不 限于杂交瘤技术(Kohler and Mi lstein. Nature, 1975, 256: 495-497) , 三瘤技术, 人 B-细胞杂交瘤技术, EBV-杂交瘤技术等。 将人恒定区和非人源的可变区结合的 嵌合抗体可用已有的技术生产(Morrison et al , PNAS, 1985, 81: 6851) 0 而已有的 生产单链抗体的技术(U. S. Pat No.4946778)也可用于生产抗人淀粉类前体蛋白结 合蛋白 9的单链抗体。 Polyclonal antibodies can be produced by injecting human amyloid precursor protein binding protein 9 directly into immunized animals (such as rabbits, mice, rats, etc.). A variety of adjuvants can be used to enhance the immune response, including but not limited to 'S adjuvant and so on. Techniques for preparing monoclonal antibodies to human amyloid precursor protein binding protein 9 include, but are not limited to, hybridoma technology (Kohler and Milstein. Nature, 1975, 256: 495-497), triple tumor technology, human B-cell hybridoma Technology, EBV-hybridoma technology, etc. Chimeric antibodies combining human constant regions and non-human variable regions can be produced using existing techniques (Morrison et al, PNAS, 1985, 81: 6851). 0 Existing techniques for producing single-chain antibodies (US Pat No. .4946778) can also be used to produce single chain antibodies against human amyloid precursor protein binding protein 9.
抗人淀粉类前体蛋白结合蛋白 9 的抗体可用于免疫组织化学技术中, 检测活 检标本中的人淀粉类前体蛋白结合蛋白 9。  Antibodies against human amyloid precursor protein binding protein 9 can be used in immunohistochemical techniques to detect human amyloid precursor protein binding protein 9 in biopsy specimens.
与人淀粉类前体蛋白结合蛋白 9 结合的单克隆抗体也可用放射性同位素标 记, 注入体内可跟踪其位置和分布。 这种放射性标记的抗体可作为一种非创伤性 诊断方法用于肿瘤细胞的定位和判断是否有转移。  Monoclonal antibodies that bind to human amyloid precursor protein binding protein 9 can also be labeled with radioisotopes and injected into the body to track their location and distribution. This radiolabeled antibody can be used as a non-invasive diagnostic method to locate tumor cells and determine whether there is metastasis.
抗体还可用于设计针对体内某一特殊部位的免疫毒素。 如人淀粉类前体蛋白 结合蛋白 9 高亲和性的单克隆抗体可与细菌或植物毒素(如白喉毒素, 蓖麻蛋白, 红豆碱等)共价结合。 一种通常的方法是用巯基交联剂如 SPDP , 攻击抗体的氨基, 通过二硫键的交换, 将毒素结合于抗体上, 这种杂交抗体可用于杀灭人淀粉类前 体蛋白结合蛋白 9阳性的细胞。 Antibodies can also be used to design immunotoxins that target a particular part of the body. For example, human amyloid precursor protein binding protein 9 high affinity monoclonal antibodies can interact with bacterial or plant toxins (such as diphtheria toxin, ricin, Ormosine, etc.). A common method is to attack the amino group of an antibody with a thiol cross-linking agent such as SPDP and bind the toxin to the antibody through the exchange of disulfide bonds. This hybrid antibody can be used to kill human starch precursor protein binding protein 9 Positive cells.
本发明中的抗体可用于治疗或预防与人淀粉类前体蛋白结合蛋白 9相关的疾 病。 给予适当剂量的抗体可以刺激或阻断人淀粉类前体蛋白结合蛋白 9 的产生或 活性。  The antibodies of the present invention can be used to treat or prevent diseases related to human amyloid precursor protein binding protein 9. Administration of an appropriate dose of antibody can stimulate or block the production or activity of human amyloid precursor protein binding protein 9.
本发明还涉及定量和定位检测人淀粉类前体蛋白结合蛋白 9水平的诊断试验 方法。 这些试验是本领域所熟知的, 且包括 FI SH 测定和放射免疫测定。 试验中 所检测的人淀粉类前体蛋白结合蛋白 9 水平, 可以用作解释人淀粉类前体蛋白结 合蛋白 9在各种疾病中的重要性和用于诊断人淀粉类前体蛋白结合蛋白 9起作用 的疾病。  The invention also relates to a diagnostic test method for quantitative and localized detection of human amyloid precursor protein binding protein 9 levels. These tests are well known in the art and include FI SH assays and radioimmunoassays. The level of human amyloid precursor protein binding protein 9 detected in the test can be used to explain the importance of human amyloid precursor protein binding protein 9 in various diseases and to diagnose human amyloid precursor protein binding protein 9 A working disease.
本发明的多肽还可用作肽谱分析, 例如, 多肽可用物理的、 化学或酶进行特 异性切割, 并进行一维或二维或三维的凝胶电泳分析,更好的是进行质谱分析。  The polypeptide of the present invention can also be used for peptide mapping analysis. For example, the polypeptide can be specifically cleaved by physical, chemical or enzymatic analysis, and subjected to one-dimensional or two-dimensional or three-dimensional gel electrophoresis analysis, and more preferably mass spectrometry.
编码人淀粉类前体蛋白结合蛋白 9 的多核苷酸也可用于多种治疗目的。 基因 治疗技术可用于治疗由于人淀粉类前体蛋白结合蛋白 9 的无表达或异常 /无活性 表达所致的细胞增殖、 发育或代谢异常。 重组的基因治疗载体(如病毒载体)可设 计用于表达变异的人淀粉类前体蛋白结合蛋白 9 , 以抑制内源性的人淀粉类前体 蛋白结合蛋白 9 活性。 例如, 一种变异的人淀粉类前体蛋白结合蛋白 9 可以是缩 短的、 缺失了信号传导功能域的人淀粉类前体蛋白结合蛋白 9 , 虽可与下游的底 物结合, 但缺乏信号传导活性。 因此重组的基因治疗载体可用于治疗人淀粉类前 体蛋白结合蛋白 9 表达或活性异常所致的疾病。 来源于病毒的表达载体如逆转录 病毒、 腺病毒、 腺病毒相关病毒、 单纯疱疹病毒、 细小病毒等可用于将编码人淀 粉类前体蛋白结合蛋白 9 的多核苷酸转移至细胞内。 构建携带编码人淀粉类前体 蛋白结合蛋白 9 的多核苷酸的重组病毒载体的方法可见于已有文献(Sambrook, e t a l . )。 另外重组编码人淀粉类前体蛋白结合蛋白 9 的多核苷酸可包装到脂质体中 转移至细胞内。  Polynucleotides encoding human amyloid precursor protein binding protein 9 can also be used for a variety of therapeutic purposes. Gene therapy technology can be used to treat abnormal cell proliferation, development or metabolism caused by the non-expression or abnormal / inactive expression of human amyloid precursor protein binding protein 9. Recombinant gene therapy vectors (such as viral vectors) can be designed to express variant human amyloid precursor protein binding protein 9 to inhibit endogenous human amyloid precursor protein binding protein 9 activity. For example, a variant human amyloid precursor protein-binding protein 9 may be a shortened human amyloid precursor protein-binding protein 9 that lacks a signaling domain. Although it can bind to downstream substrates, it lacks signal transduction. active. Therefore, the recombinant gene therapy vector can be used for treating diseases caused by abnormal expression or activity of human amyloid precursor protein binding protein 9. Virus-derived expression vectors such as retroviruses, adenoviruses, adenovirus-associated viruses, herpes simplex virus, parvoviruses, and the like can be used to transfer polynucleotides encoding human starch precursor protein binding protein 9 into cells. A method for constructing a recombinant viral vector carrying a polynucleotide encoding a human amyloid precursor protein binding protein 9 can be found in the existing literature (Sambrook, et al.). In addition, a recombinant polynucleotide encoding human amyloid precursor protein binding protein 9 can be packaged into liposomes and transferred into cells.
多核苷酸导入组织或细胞内的方法包括: 将多核苷酸直接注入到体内组织 中; 或在体外通过载体(如病毒、 噬菌体或质粒等)先将多核苷酸导入细胞中, 再 将细胞移植到体内等。  Methods for introducing a polynucleotide into a tissue or cell include: directly injecting the polynucleotide into a tissue in vivo; or introducing the polynucleotide into a cell in vitro through a vector (such as a virus, phage, or plasmid), and then transplanting the cell Into the body and so on.
抑制人淀粉类前体蛋白结合蛋白 9 mRNA的寡核苷酸(包括反义 RNA和 DNA)以 及核酶也在本发明的范围之内。 核酶是一种能特异性分解特定 RNA 的酶样 RNA分 子, 其作用机制是核酶分子与互补的靶 RNA 特异性杂交后进行核酸内切作用。 反 义的 RNA和 DNA及核酶可用已有的任何 RNA或 DNA合成技术获得, 如固相磷酸酰 胺化学合成法合成寡核苷酸的技术已广泛应用。 反义 RNA 分子可通过编码该 RNA 的 DNA序列在体外或体内转录获得。 这种 DNA序列已整合到载体的 RNA聚合酶启 动子的下游。 为了增加核酸分子的稳定性, 可用多种方法对其进行修饰, 如增加 两侧的序列长度, 核糖核苷之间的连接应用磷酸硫酯键或肽键而非磷酸二酯键。 Oligonucleotides (including antisense RNA and DNA) and ribozymes that inhibit human amyloid precursor protein binding protein 9 mRNA are also within the scope of the present invention. A ribozyme is an enzyme-like RNA molecule that specifically decomposes specific RNA. Its mechanism of action is that the ribozyme molecule specifically hybridizes with a complementary target RNA for endonucleation. Anti The sensed RNA, DNA and ribozyme can be obtained by any existing RNA or DNA synthesis technology. For example, the technology for the synthesis of oligonucleotides by solid-phase phosphoramidite chemical synthesis has been widely used. Antisense RNA molecules can be obtained by in vitro or in vivo transcription of a DNA sequence encoding the RNA. This DNA sequence has been integrated downstream of the RNA polymerase promoter of the vector. In order to increase the stability of a nucleic acid molecule, it can be modified in a variety of ways, such as increasing the sequence length on both sides, and the ribonucleoside linkages should use phosphate thioester or peptide bonds instead of phosphodiester bonds.
编码人淀粉类前体蛋白结合蛋白 9 的多核苷酸可用于与人淀粉类前体蛋白结 合蛋白 9 的相关疾病的诊断。 编码人淀粉类前体蛋白结合蛋白 9 的多核苷酸可用 于检测人淀粉类前体蛋白结合蛋白 9 的表达与否或在疾病状态下人淀粉类前体蛋 白结合蛋白 9 的异常表达。 如编码人淀粉类前体蛋白结合蛋白 9 的 DNA序列可用 于对活检标本进行杂交以判断人淀粉类前体蛋白结合蛋白 9 的表达状况。 杂交技 术包括 Sou t he rn 印迹法, No r t he rn 印迹法、 原位杂交等。 这些技术方法都是公 开的成熟技术, 相关的试剂盒都可从商业途径得到。 本发明的多核苷酸的一部分 或全部可作为探针固定在微阵列(M i c roa r ra y)或 DNA 芯片(又称为 "基因芯片" ) 上, 用于分析组织中基因的差异表达分析和基因诊断。 用人淀粉类前体蛋白结合 蛋白 9特异的引物进行 RNA-聚合酶链反应(RT-PCR)体外扩增也可检测人淀粉类前 体蛋白结合蛋白 9的转录产物。  The polynucleotide encoding human amyloid precursor protein binding protein 9 can be used for diagnosis of diseases related to human amyloid precursor protein binding protein 9. The polynucleotide encoding human amyloid precursor protein-binding protein 9 can be used to detect the expression of human amyloid precursor protein-binding protein 9 or abnormal expression of human amyloid precursor protein-binding protein 9 in a disease state. For example, the DNA sequence encoding human amyloid precursor protein binding protein 9 can be used to hybridize biopsy specimens to determine the expression status of human amyloid precursor protein binding protein 9. Hybridization techniques include Souternrn blotting, Northenrn blotting, in situ hybridization, and the like. These techniques and methods are publicly available and mature, and related kits are commercially available. Some or all of the polynucleotides of the present invention can be used as probes to be fixed on a microarray (Mic roaray) or a DNA chip (also known as a "gene chip") for analyzing differential expression analysis of genes in tissues And genetic diagnosis. Human amyloid precursor protein binding protein 9 specific primers for RNA-polymerase chain reaction (RT-PCR) in vitro amplification can also detect the human amyloid precursor protein binding protein 9 transcription products.
检测人淀粉类前体蛋白结合蛋白 9基因的突变也可用于诊断人淀粉类前体蛋 白结合蛋白 9相关的疾病。 人淀粉类前体蛋白结合蛋白 9突变的形式包括与正常 野生型人淀粉类前体蛋白结合蛋白 9 DNA 序列相比的点突变、 易位、 缺失、 重组 和其它任何异常等。 可用已有的技术如 Sou t he rn 印迹法、 DNA序列分析、 PCR和 原位杂交检测突变。 另外, 突变有可能影响蛋白的表达, 因此用 No r t he rn 印迹 法、 We s t e rn印迹法可间接判断基因有无突变。  Detection of mutations in the human amyloid precursor protein binding protein 9 gene can also be used to diagnose human amyloid precursor protein binding protein 9-related diseases. Human amyloid precursor protein binding protein 9 mutations include point mutations, translocations, deletions, recombinations, and any other abnormalities compared to the normal wild-type human amyloid precursor protein binding protein 9 DNA sequence. Mutations can be detected using existing techniques such as Southern blotting, DNA sequence analysis, PCR and in situ hybridization. In addition, mutations may affect protein expression. Therefore, the use of Northern blotting and Wetternrn blotting can indirectly determine whether a gene is mutated.
本发明的序列对染色体鉴定也是有价值的。 该序列会特异性地针对某条人 染色体具体位置且并可以与其杂交。 目前, 需要鉴定染色体上的各基因的具体 位点。 现在, 只有很少的基于实际序列数据(重复多态性)的染色体标记物可用 于标记染色体位置。 根据本发明, 为了将这些序列与疾病相关基因相关联, 其 重要的第一步就是将这些 DNA序列定位于染色体上。  The sequences of the invention are also valuable for chromosome identification. The sequence specifically targets a specific position on a human chromosome and can hybridize to it. Currently, specific sites for each gene on the chromosome need to be identified. Currently, only a few chromosome markers based on actual sequence data (repeating polymorphisms) are available for marking chromosome positions. According to the present invention, in order to associate these sequences with disease-related genes, an important first step is to locate these DNA sequences on a chromosome.
简而言之, 根据 cDNA制备 PCR引物(优选 1 5- 35 bp) , 可以将序列定位于染色 体上。 然后, 将这些引物用于 PCR筛选含各条人染色体的体细胞杂合细胞。 只有 那些含有相应于引物的人基因的杂合细胞会产生扩增的片段。  In short, PCR primers (preferably 1 to 35 bp) are prepared based on cDNA, and the sequences can be located on chromosomes. These primers were then used for PCR screening of somatic hybrid cells containing individual human chromosomes. Only those heterozygous cells containing the human gene corresponding to the primer will produce amplified fragments.
体细胞杂合细胞的 PCR定位法, 是将 DNA定位到具体染色体的快捷方法。 使 用本发明的寡核苷酸引物, 通过类似方法, 可利用一组来自特定染色体的片段 或大量基因组克隆而实现亚定位。 可用于染色体定位的其它类似策略包括原位 杂交、 用标记的流式分选的染色体预筛选和杂交预选, 从而构建染色体特异的 cDNA库。 PCR localization of somatic hybrid cells is a quick way to localize DNA to specific chromosomes. Using the oligonucleotide primers of the present invention, by a similar method, a set of fragments from a specific chromosome can be utilized Or a large number of genomic clones to achieve sublocalization. Other similar strategies that can be used for chromosomal localization include in situ hybridization, chromosome pre-screening with labeled flow sorting, and hybrid pre-selection to construct chromosome-specific cDNA libraries.
将 cDNA克隆与中期染色体进行荧光原位杂交(FISH) , 可以在一个步骤中精 确地进行染色体定位。 此技术的综述,参见 Verma等, Human Chromosomes: a Manua 1 of Basic Techniques, Pergamon Press, New York(1988)。  Fluorescent in situ hybridization (FISH) of cDNA clones with metaphase chromosomes allows precise chromosomal localization in one step. For a review of this technique, see Verma et al., Human Chromosomes: a Manua 1 of Basic Techniques, Pergamon Press, New York (1988).
一旦序列被定位到准确的染色体位置, 此序列在染色体上的物理位置就可 以与基因图数据相关联。 这些数据可见于例如, V.Mckusick, Mendel ian Inheritance in Man (可通过与 Johns Hopkins University Welch Medical Library 联机获得)。 然后可通过连锁分析, 确定基因与业已定位到染色体区域上的疾病 之间的关系。  Once the sequence is located at the exact chromosomal location, the physical location of the sequence on the chromosome can be correlated with the genetic map data. This data can be found, for example, in V. Mckusick, Mendelian Inheritance in Man (available online with Johns Hopkins University Welch Medical Library). Linkage analysis can then be used to determine the relationship between genes and diseases that have been mapped to chromosomal regions.
接着, 需要测定患病和未患病个体间的 cDNA或基因组序列差异。 如果在一 些或所有的患病个体中观察到某突变, 而该突变在任何正常个体中未观察到, 则该突变可能是疾病的病因。 比较患病和未患病个体, 通常涉及首先寻找染色 体中结构的变化, 如从染色体水平可见的或用基于 cDNA序列的 PCR可检测的缺失 或易位。 根据目前的物理作图和基因定位技术的分辨能力, 被精确定位至与疾 病有关的染色体区域的 cDNA, 可以是 50至 500个潜在致病基因间之一种(假定 1兆 碱基作图分辨能力和每 20kb对应于一个基因)。  Next, the difference in cDNA or genomic sequence between the affected and unaffected individuals needs to be determined. If a mutation is observed in some or all diseased individuals and the mutation is not observed in any normal individuals, the mutation may be the cause of the disease. Comparing affected and unaffected individuals usually involves first looking for structural changes in chromosomes, such as deletions or translocations that are visible at the chromosomal level or detectable with cDNA sequence-based PCR. According to the resolution capabilities of current physical mapping and gene mapping technology, the cDNA accurately mapped to the chromosomal region associated with the disease can be one of 50 to 500 potentially pathogenic genes (assuming 1 megabase mapping resolution Capacity and each 20kb corresponds to a gene).
可以将本发明的多肽、 多核苷酸及其模拟物、 激动剂、 拮抗剂和抑制剂与合 适的药物载体组合后使用。 这些载体可以是水、 葡萄糖、 乙醇、 盐类、 缓冲液、 甘油以及它们的组合。 组合物包含安全有效量的多肽或拮抗剂以及不影响药物效 果的载体和赋形剂。 这些组合物可以作为药物用于疾病治疗。  The polypeptides, polynucleotides and mimetics, agonists, antagonists and inhibitors of the present invention can be used in combination with a suitable pharmaceutical carrier. These carriers can be water, glucose, ethanol, salts, buffers, glycerol, and combinations thereof. The composition comprises a safe and effective amount of the polypeptide or antagonist, and carriers and excipients that do not affect the effect of the drug. These compositions can be used as drugs for the treatment of diseases.
本发明还提供含有一种或多种容器的药盒或试剂盒, 容器中装有一种或多种 本发明的药用组合物成分。 与这些容器一起, 可以有由制造、 使用或销售药品或 生物制品的政府管理机构所给出的指示性提示, 该提示反映出生产、 使用或销售 的政府管理机构许可其在人体上施用。 此外, 本发明的多肽可以与其它的治疗化 合物结合使用。  The present invention also provides a kit or kit containing one or more containers containing one or more ingredients of the pharmaceutical composition of the present invention. Along with these containers, there may be instructional instructions given by government agencies that manufacture, use, or sell pharmaceuticals or biological products, which reminders permit their administration on the human body by government agencies that manufacture, use, or sell them. In addition, the polypeptide of the present invention can be used in combination with other therapeutic compounds.
药物组合物可以以方便的方式给药, 如通过局部、 静脉内、 腹膜内、 肌内、 皮下、 鼻内或皮内的给药途径。 人淀粉类前体蛋白结合蛋白 9 以有效地治疗和 Z 或预防具体的适应症的量来给药。 施用于患者的人淀粉类前体蛋白结合蛋白 9 的 量和剂量范围将取决于许多因素, 如给药方式、 待治疗者的健康条件和诊断医生 的判断。  The pharmaceutical composition can be administered in a convenient manner, such as by a topical, intravenous, intraperitoneal, intramuscular, subcutaneous, intranasal or intradermal route of administration. Human amyloid precursor protein binding protein 9 is administered in an amount effective to treat and / or prevent specific indications. The amount and range of human amyloid precursor protein binding protein 9 administered to a patient will depend on many factors, such as the mode of administration, the health conditions of the person to be treated, and the judgment of the diagnostician.

Claims

权 利 要 求 书  Request for Rights
I、一种分离的多肽-人淀粉类前体蛋白结合蛋白 9,其特征在于它包含有: SEQ ID N0: 2所示的氨基酸序列的多肽、 或其多肽的活性片段、 类似物或衍生物。 I. An isolated polypeptide-human amyloid precursor protein binding protein 9, characterized in that it comprises: a polypeptide having the amino acid sequence shown in SEQ ID NO: 2, or an active fragment, analog, or derivative of the polypeptide .
2、 如权利要求 1 所述的多肽, 其特征在于所述多肽、 类似物或衍生物的氨基酸 序列具有与 SEQ I D NO: 2所示的氨基酸序列至少 95%的相同性。 2. The polypeptide according to claim 1, characterized in that the amino acid sequence of the polypeptide, analog or derivative has at least 95% identity with the amino acid sequence shown in SEQ ID NO: 2.
3、 如权利要求 2 所述的多肽, 其特征在于它包含具有 SEQ I D NO: 2 所示的氨基 酸序列的多肽。  3. The polypeptide according to claim 2, characterized in that it comprises a polypeptide having the amino acid sequence shown in SEQ ID D NO: 2.
4、 一种分离的多核苷酸, 其特征在于所述多核苷酸包含选自下组中的一种: (a) 编码具有 SEQ I D NO: 2所示氨基酸序列的多肽或其片段、 类似物、 衍生物 的多核苷酸;  4. An isolated polynucleotide, characterized in that said polynucleotide comprises one selected from the group consisting of: (a) encoding a polypeptide having an amino acid sequence shown in SEQ ID NO: 2 or a fragment thereof, an analog thereof; Polynucleotides of derivatives;
(b) 与多核苷酸 (a ) 互补的多核苷酸; 或  (b) a polynucleotide complementary to polynucleotide (a); or
(c) 与 ) 或 (b ) 有至少 70%相同性的多核苷酸。  (c) a polynucleotide that is at least 70% identical to) or (b).
5、 如权利要求 4所述的多核苷酸,其特征在于所述多核苷酸包含编码具有 SEQ I D NO: 2所示氨基酸序列的多核苷酸。  5. The polynucleotide according to claim 4, wherein the polynucleotide comprises a polynucleotide encoding an amino acid sequence represented by SEQ ID NO: 2.
6、 如权利要求 4所述的多核苷酸, 其特征在于所述多核苷酸的序列包含有 SEQ ID NO: 1 中 1 602-1 85 3位的序列或 SEQ I D NO: 1 中 1 -1 892位的序列。  6. The polynucleotide according to claim 4, characterized in that the sequence of the polynucleotide comprises the sequence of positions 1 602-1 85 in SEQ ID NO: 1 or 1 -1 in SEQ ID NO: 1 892-bit sequence.
7、 一种含有外源多核苷酸的重组载体, 其特征在于它是由权利要求 4-6 中的任 一权利要求所述多核苷酸与质粒、 病毒或运载体表达载体构建而成的重组载体。 8、 一种含有外源多核苷酸的遗传工程化宿主细胞, 其特征在于它是选自于下列 一种宿主细胞:  7. A recombination vector containing an exogenous polynucleotide, characterized in that it is a recombination constructed by the polynucleotide according to any one of claims 4-6 and a plasmid, virus or a carrier expression vector Carrier. 8. A genetically engineered host cell containing an exogenous polynucleotide, characterized in that it is selected from one of the following host cells:
(a) 用权利要求 7所述的重组载体转化或转导的宿主细胞; 或  (a) a host cell transformed or transduced with the recombinant vector of claim 7; or
(b) 用权利要求 4-6中的任一权利要求所述多核苷酸转化或转导的宿主细胞。 (b) a host cell transformed or transduced with a polynucleotide according to any one of claims 4-6.
9、 一种具有人淀粉类前体蛋白结合蛋白 9 活性的多肽的制备方法, 其特征在于 所述方法包括: 9. A method for preparing a polypeptide having human starch precursor protein binding protein 9 activity, characterized in that the method includes:
(a) 在表达人淀粉类前体蛋白结合蛋白 9 条件下, 培养权利要求 8 所述的工 程化宿主细胞;  (a) culturing the engineered host cell according to claim 8 under the condition of expressing human amyloid precursor protein binding protein 9;
(b) 从培养物中分离出具有人淀粉类前体蛋白结合蛋白 9活性的多肽。  (b) A polypeptide having human amyloid precursor protein binding protein 9 activity is isolated from the culture.
1 0、 一种能与多肽结合的抗体,其特征在于所述抗体是能与人淀粉类前体蛋白结 合蛋白 9特异性结合的抗体。  10. An antibody capable of binding to a polypeptide, characterized in that said antibody is an antibody capable of specifically binding to human amyloid precursor protein binding protein 9.
I I、 一类模拟或调节多肽活性或表达的化合物, 其特征在于它们是模拟、 促进、 拮抗或抑制人淀粉类前体蛋白结合蛋白 9的活性的化合物。 12、 如权利要求 11 所述的化合物, 其特征在于它是 SEQ ID NO: 1 所示的多核苷 酸序列或其片段的反义序列。 II. A class of compounds that mimic or regulate the activity or expression of a polypeptide, characterized in that they are compounds that mimic, promote, antagonize or inhibit the activity of human amyloid precursor protein binding protein 9. 12. The compound according to claim 11, characterized in that it is an antisense sequence of the polynucleotide sequence shown in SEQ ID NO: 1 or a fragment thereof.
1 3、 一种权利要求 1 1 所述化合物的应用, 其特征在于所述化合物用于调节人淀 粉类前体蛋白结合蛋白 9在体内、 体外活性的方法。  1 3. A use of the compound according to claim 11, characterized in that the compound is used for a method for regulating the activity of human starch precursor protein binding protein 9 in vivo and in vitro.
14、 一种检测与权利要求 1-3 中的任一权利要求所述多肽相关的疾病或疾病易感 性的方法, 其特征在于其包括检测所述多肽的表达量, 或者检测所述多肽的活性, 或者检测多核苷酸中引起所述多肽表达量或活性异常的核苷酸变异。 14. A method for detecting a disease or susceptibility to a disease associated with a polypeptide according to any one of claims 1-3, characterized in that it comprises detecting the expression level of the polypeptide, or detecting the activity of the polypeptide Or detecting a nucleotide variation in a polynucleotide that causes abnormal expression or activity of the polypeptide.
1 5、 如权利要求 1 -3 中的任一权利要求所述多肽的应用, 其特征在于它应用于筛 选人淀粉类前体蛋白结合蛋白 9 的模拟物、 激动剂, 拮抗剂或抑制剂; 或者用于 肽指紋图谱鉴定。  15. Use of a polypeptide according to any one of claims 1 to 3, characterized in that it is used for screening mimetics, agonists, antagonists or inhibitors of human starch precursor protein binding protein 9; Or used for peptide fingerprint identification.
1 6、 如权利要求 4- 6 中的任一权利要求所述的核酸分子的应用, 其特征在于它作 为引物用于核酸扩增反应, 或者作为探针用于杂交反应, 或者用于制造基因芯片 或微阵列。  16. The use of a nucleic acid molecule according to any one of claims 4 to 6, characterized in that it is used as a primer for a nucleic acid amplification reaction, or as a probe for a hybridization reaction, or for manufacturing a gene Chip or microarray.
1 7、 如权利要求 1-6 及 1 1 中的任一权利要求所述的多肽、 多核苷酸或化合物的 应用, 其特征在于用所述多肽、 多核苷酸或其模拟物、 激动剂、 拮抗剂或抑制剂 以安全有效剂量与药学上可接受的载体组成作为诊断或治疗与人淀粉类前体蛋白 结合蛋白 9异常相关的疾病的药物组合物。  17. Use of a polypeptide, polynucleotide or compound according to any one of claims 1-6 and 1 1, characterized in that said polypeptide, polynucleotide or mimetic, agonist, The antagonist or inhibitor is composed of a safe and effective dose and a pharmaceutically acceptable carrier as a pharmaceutical composition for diagnosing or treating a disease associated with abnormality of human amyloid precursor protein binding protein 9.
1 8、 权利要求 1-6 及 1 1 中的任一权利要求所述的多肽、 多核苷酸或化合物的应 用, 其特征在于用所述多肽、 多核苷酸或化合物制备用于治疗如恶性肿瘤, 血液 病, HIV感染和免疫性疾病和各类炎症的药物。  18. Use of the polypeptide, polynucleotide or compound according to any one of claims 1-6 and 1 1, characterized in that the polypeptide, polynucleotide or compound is used for preparing a treatment such as a malignant tumor Drugs for blood diseases, HIV infection and immune diseases and various types of inflammation.
PCT/CN2001/000530 2000-03-29 2001-03-26 A new polypeptide- human amyloid precursor protein-binding protein 9 and the polynucleotide encoding it WO2001079438A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU73782/01A AU7378201A (en) 2000-03-29 2001-03-26 A novel polypeptide, a human 9-binding amyloid precursor protein and the polynucleotide encoding the polypeptide

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
CN00115261.0 2000-03-29
CN00115261A CN1315439A (en) 2000-03-29 2000-03-29 Polypeptide-human amyloid precursor protein bindin 9 and polynucleotide for coding it

Publications (2)

Publication Number Publication Date
WO2001079438A2 true WO2001079438A2 (en) 2001-10-25
WO2001079438A3 WO2001079438A3 (en) 2002-02-28

Family

ID=4584729

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/CN2001/000530 WO2001079438A2 (en) 2000-03-29 2001-03-26 A new polypeptide- human amyloid precursor protein-binding protein 9 and the polynucleotide encoding it

Country Status (3)

Country Link
CN (1) CN1315439A (en)
AU (1) AU7378201A (en)
WO (1) WO2001079438A2 (en)

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1995001429A1 (en) * 1993-06-30 1995-01-12 Rhone-Poulenc Rorer S.A. Pharmaceutical compositions and their use, namely for the treatment of neurodegenerative diseases
WO1997016458A1 (en) * 1995-11-01 1997-05-09 Kos Pharmaceuticals, Inc. Apolipoprotein e2 and treatment of alzheimer's disease
WO1998016557A1 (en) * 1996-10-11 1998-04-23 The General Hospital Corporation Assays for g-protein-linked receptors
WO2000002911A2 (en) * 1998-07-10 2000-01-20 Curagen Corporation INTERACTION OF HUMAN BETA AMYLOID PRECURSOR PROTEIN (β-APP) WITH HUMAN LON-PROTEASE LIKE PROTEIN (HSLON)

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1995001429A1 (en) * 1993-06-30 1995-01-12 Rhone-Poulenc Rorer S.A. Pharmaceutical compositions and their use, namely for the treatment of neurodegenerative diseases
WO1997016458A1 (en) * 1995-11-01 1997-05-09 Kos Pharmaceuticals, Inc. Apolipoprotein e2 and treatment of alzheimer's disease
WO1998016557A1 (en) * 1996-10-11 1998-04-23 The General Hospital Corporation Assays for g-protein-linked receptors
WO2000002911A2 (en) * 1998-07-10 2000-01-20 Curagen Corporation INTERACTION OF HUMAN BETA AMYLOID PRECURSOR PROTEIN (β-APP) WITH HUMAN LON-PROTEASE LIKE PROTEIN (HSLON)

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
CLAVERIE J.-M. AND MAKALOWSKI W.: 'Alu alert' NATURE vol. 371, 27 October 1994, page 752, XP002070602 *
JURKA J. AND MILOSAVLJEVIC A.: 'Reconstruction and analysis of human Alu genes' J. MOL. EVOL. vol. 32, no. 2, 1991, pages 105 - 121 *

Also Published As

Publication number Publication date
WO2001079438A3 (en) 2002-02-28
CN1315439A (en) 2001-10-03
AU7378201A (en) 2001-10-30

Similar Documents

Publication Publication Date Title
WO2002026973A1 (en) A novel polypeptide-human heterogeneous nuclear ribonucleoprotein 32.01 and the polynucleotide encoding said polypeptide
WO2001079438A2 (en) A new polypeptide- human amyloid precursor protein-binding protein 9 and the polynucleotide encoding it
WO2001068688A1 (en) A novel polypeptide, a human protein kinase tak1-27 and the polynucleotide encoding the polypeptide
WO2001066730A1 (en) A novel polypeptide, a human rs3 protein 12 and the polynucleotide encoding the polypeptide
WO2001075101A1 (en) A novel polypeptide- human transcription regulator 8 and the polynucleotide encoding said polypeptide
WO2001070965A1 (en) A novel polypeptide, a human regulatory transcription factor 15 and the polynucleotide encoding the polypeptide
WO2001064727A1 (en) A novel polypeptide, mouse soluble adenylyl cyclase 25 and the polynucleotide encoding thereof
WO2001066584A1 (en) A novel polypeptide, human pax protein 9 and the polynucleotide encoding thereof
WO2001081594A1 (en) A novel polypeptide, a human pax protein 17 and the polynucleotide encoding the polypeptide
WO2001079432A2 (en) A novel polypeptide, a human cell differentiation transcription factor 58 and the polynucleotide encoding the polypeptide
WO2001072802A1 (en) A new polypeptide-human amyloid precursor protein-binding protein 14 and the polynucleotide encoding it
WO2001077165A1 (en) A novel polypeptide, human amyloid precursor protein-binding protein 12 and the polynucleotide encoding thereof
WO2001066769A1 (en) Novel polypeptide--- a human yiplp28 and polynucleotide encoding it
WO2001070999A1 (en) Novel polypeptide --- the amyloid precursor protein --- binding protein and polynucleotide encoding it
WO2001096568A1 (en) A novel polypeptide, a human 51-binding amyloid precursor protein and the polynucleotide encoding the polypeptide
WO2001081571A1 (en) A novel polypeptide, a human protein 11 containing g protein coupling receptor conserved region and the polynucleotide encoding the polypeptide
WO2001068878A1 (en) Novel polypeptide---membrance directed and transport c protein 28 and polynucleotide encoding it
WO2001064732A1 (en) A novel polypeptide - human reverse transcription-related factor-14 and a polynucleotide sequence encoding the same
WO2001079491A1 (en) A novel polypeptide-human chloride channel protein 12 and the polynucleotide encoding said polypeptide
WO2001083536A1 (en) A novel polypeptide-cytokine receptor 15 and the polynucleotide encoding said polypeptide
WO2001064730A1 (en) A novel polypeptide, human 5-phosphatase 18 and the polynucleotide encoding thereof
WO2001064722A1 (en) A novel polypeptide-homo reverse-transcription -associated protein 9 and polynucleotide encoding said polypeptide
WO2001081392A1 (en) A novel polypeptide, human nucleolar phosphoprotein 13 and the polynucleotide encoding thereof
WO2001075013A2 (en) Novel polypeptide - a human cyclin dependent kinase 14 and polynucleotide encoding it
WO2001081537A2 (en) A NOVEL POLYPEPTIDE, DNA REPLICATION FACTOR C(A1) 37Kd HUMAN SUB-UNIT 49, AND THE POLYNUCLEOTIDE ENCODING THE POLYPEPTIDE

Legal Events

Date Code Title Description
AK Designated states

Kind code of ref document: A2

Designated state(s): AE AG AL AM AT AU AZ BA BB BG BR BY BZ CA CH CO CR CU CZ DE DK DM DZ EE ES FI GB GD GE GH GM HR HU ID IL IN IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MA MD MG MK MN MW MX MZ NO NZ PL PT RO RU SD SE SG SI SK SL TJ TM TR TT TZ UA UG US UZ VN YU ZA ZW

AL Designated countries for regional patents

Kind code of ref document: A2

Designated state(s): GH GM KE LS MW MZ SD SL SZ TZ UG ZW AM AZ BY KG KZ MD RU TJ TM AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE TR BF BJ CF CG CI CM GA GN GW ML MR NE SN TD TG

121 Ep: the epo has been informed by wipo that ep was designated in this application
AK Designated states

Kind code of ref document: A3

Designated state(s): AE AG AL AM AT AU AZ BA BB BG BR BY BZ CA CH CO CR CU CZ DE DK DM DZ EE ES FI GB GD GE GH GM HR HU ID IL IN IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MA MD MG MK MN MW MX MZ NO NZ PL PT RO RU SD SE SG SI SK SL TJ TM TR TT TZ UA UG US UZ VN YU ZA ZW

AL Designated countries for regional patents

Kind code of ref document: A3

Designated state(s): GH GM KE LS MW MZ SD SL SZ TZ UG ZW AM AZ BY KG KZ MD RU TJ TM AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE TR BF BJ CF CG CI CM GA GN GW ML MR NE SN TD TG

REG Reference to national code

Ref country code: DE

Ref legal event code: 8642

122 Ep: pct application non-entry in european phase
NENP Non-entry into the national phase in:

Ref country code: JP