WO2001079218A3 - Haplotypes of the calm1 gene - Google Patents

Haplotypes of the calm1 gene Download PDF

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Publication number
WO2001079218A3
WO2001079218A3 PCT/US2001/011509 US0111509W WO0179218A3 WO 2001079218 A3 WO2001079218 A3 WO 2001079218A3 US 0111509 W US0111509 W US 0111509W WO 0179218 A3 WO0179218 A3 WO 0179218A3
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WO
WIPO (PCT)
Prior art keywords
calm1
gene
haplotypes
disclosed
calm1 gene
Prior art date
Application number
PCT/US2001/011509
Other languages
French (fr)
Other versions
WO2001079218A2 (en
Inventor
Steven C Bentivegna
Anne Chew
Julie Y Choi
Beena Koshy
J Claiborne Stephens
Original Assignee
Genaissance Pharmaceuticals
Steven C Bentivegna
Anne Chew
Julie Y Choi
Beena Koshy
J Claiborne Stephens
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Genaissance Pharmaceuticals, Steven C Bentivegna, Anne Chew, Julie Y Choi, Beena Koshy, J Claiborne Stephens filed Critical Genaissance Pharmaceuticals
Priority to AU2001255272A priority Critical patent/AU2001255272A1/en
Publication of WO2001079218A2 publication Critical patent/WO2001079218A2/en
Publication of WO2001079218A3 publication Critical patent/WO2001079218A3/en

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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • A—HUMAN NECESSITIES
    • A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01K—ANIMAL HUSBANDRY; AVICULTURE; APICULTURE; PISCICULTURE; FISHING; REARING OR BREEDING ANIMALS, NOT OTHERWISE PROVIDED FOR; NEW BREEDS OF ANIMALS
    • A01K2217/00—Genetically modified animals
    • A01K2217/05—Animals comprising random inserted nucleic acids (transgenic)
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/156—Polymorphic or mutational markers
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids

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  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Analytical Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Organic Chemistry (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Genetics & Genomics (AREA)
  • Wood Science & Technology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Evolutionary Biology (AREA)
  • Zoology (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Pathology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

Novel single nucleotide polymorphisms in the human calmodulin-1 (CALM1) gene are described. In addition, various genotypes, haplotypes and haplotype pairs for the CALM1 gene that exist in the population are described. Compositions and methods for haplotyping and/or genotyping the CALM1 gene in an individual are also disclosed. Polynucleotides containing one or more of the CALM1 polymorphisms disclosed herein are also described.
PCT/US2001/011509 2000-04-12 2001-04-09 Haplotypes of the calm1 gene WO2001079218A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU2001255272A AU2001255272A1 (en) 2000-04-12 2001-04-09 Haplotypes of the calm1 gene

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US19634000P 2000-04-12 2000-04-12
US60/196,340 2000-04-12

Publications (2)

Publication Number Publication Date
WO2001079218A2 WO2001079218A2 (en) 2001-10-25
WO2001079218A3 true WO2001079218A3 (en) 2002-03-14

Family

ID=22724991

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2001/011509 WO2001079218A2 (en) 2000-04-12 2001-04-09 Haplotypes of the calm1 gene

Country Status (2)

Country Link
AU (1) AU2001255272A1 (en)
WO (1) WO2001079218A2 (en)

Families Citing this family (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1780276A4 (en) * 2004-08-04 2008-04-23 Riken Bone/joint disease sensitivity gene and use thereof

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5580728A (en) * 1994-06-17 1996-12-03 Perlin; Mark W. Method and system for genotyping
US5851762A (en) * 1990-07-11 1998-12-22 Gene Type Ag Genomic mapping method by direct haplotyping using intron sequence analysis

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5851762A (en) * 1990-07-11 1998-12-22 Gene Type Ag Genomic mapping method by direct haplotyping using intron sequence analysis
US5580728A (en) * 1994-06-17 1996-12-03 Perlin; Mark W. Method and system for genotyping

Non-Patent Citations (3)

* Cited by examiner, † Cited by third party
Title
ESCARY ET AL.: "A first high density map of 981 biallelic markers on human chromosome 14", GENOMICS, vol. 70, December 2000 (2000-12-01), pages 153 - 164, XP002919254 *
RHYNER ET AL.: "Structure of the human CALM1 calmodulin gene and identification of two CALM1-related pseudogenes CAML1P1 and CALM1P2", EUROPEAN JOURNAL OF BIOCHEMISTRY, vol. 225, October 1994 (1994-10-01), pages 71 - 82, XP002949255 *
SAMBROOK ET AL.: "Molecular cloning, a laboratory manual", December 1989, COLD SPRING HARBOR LABORATORY PRESS, NY, XP002949256 *

Also Published As

Publication number Publication date
AU2001255272A1 (en) 2001-10-30
WO2001079218A2 (en) 2001-10-25

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