WO1993018045A1 - Anti-cancer pyrrolobenzodiazepine derivatives - Google Patents
Anti-cancer pyrrolobenzodiazepine derivatives Download PDFInfo
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- WO1993018045A1 WO1993018045A1 PCT/GB1993/000483 GB9300483W WO9318045A1 WO 1993018045 A1 WO1993018045 A1 WO 1993018045A1 GB 9300483 W GB9300483 W GB 9300483W WO 9318045 A1 WO9318045 A1 WO 9318045A1
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- YUOCYTRGANSSRY-UHFFFAOYSA-N pyrrolo[2,3-i][1,2]benzodiazepine Chemical class C1=CN=NC2=C3C=CN=C3C=CC2=C1 YUOCYTRGANSSRY-UHFFFAOYSA-N 0.000 title claims description 4
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- MSNVESLISHTIRS-UHFFFAOYSA-N 9h-pyrrolo[2,1-c][1,4]benzodiazepine Chemical compound N1=C2C=CC=CC2=CN2CC=CC2=C1 MSNVESLISHTIRS-UHFFFAOYSA-N 0.000 claims abstract 14
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- OMRPLUKQNWNZAV-CONSDPRKSA-N (6as)-3-[3-[[(6as)-2-methoxy-8-(4-methoxyphenyl)-11-oxo-6a,7-dihydropyrrolo[2,1-c][1,4]benzodiazepin-3-yl]oxy]propoxy]-8-(4-aminophenyl)-2-methoxy-6a,7-dihydropyrrolo[2,1-c][1,4]benzodiazepin-11-one Chemical compound C1=CC(OC)=CC=C1C1=CN2C(=O)C3=CC(OC)=C(OCCCOC=4C(=CC=5C(=O)N6C=C(C[C@H]6C=NC=5C=4)C=4C=CC(N)=CC=4)OC)C=C3N=C[C@@H]2C1 OMRPLUKQNWNZAV-CONSDPRKSA-N 0.000 claims description 24
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- IAEOYUUPFYJXHN-UHFFFAOYSA-N 1,5-diiodopentane Chemical compound ICCCCCI IAEOYUUPFYJXHN-UHFFFAOYSA-N 0.000 description 1
- QLIMAARBRDAYGQ-UHFFFAOYSA-N 1,6-diiodohexane Chemical compound ICCCCCCI QLIMAARBRDAYGQ-UHFFFAOYSA-N 0.000 description 1
- ONBQEOIKXPHGMB-VBSBHUPXSA-N 1-[2-[(2s,3r,4s,5r)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]oxy-4,6-dihydroxyphenyl]-3-(4-hydroxyphenyl)propan-1-one Chemical compound O[C@@H]1[C@H](O)[C@@H](CO)O[C@H]1OC1=CC(O)=CC(O)=C1C(=O)CCC1=CC=C(O)C=C1 ONBQEOIKXPHGMB-VBSBHUPXSA-N 0.000 description 1
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- SVUOLADPCWQTTE-UHFFFAOYSA-N 1h-1,2-benzodiazepine Chemical compound N1N=CC=CC2=CC=CC=C12 SVUOLADPCWQTTE-UHFFFAOYSA-N 0.000 description 1
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- UFBVPJRSUWSBRT-UHFFFAOYSA-N 2-[ethoxy(ethylsulfanyl)methyl]-3-ethylidenepyrrolidine Chemical compound C(C)OC(C1NCCC1=CC)SCC UFBVPJRSUWSBRT-UHFFFAOYSA-N 0.000 description 1
- SDTMFDGELKWGFT-UHFFFAOYSA-N 2-methylpropan-2-olate Chemical compound CC(C)(C)[O-] SDTMFDGELKWGFT-UHFFFAOYSA-N 0.000 description 1
- SLAMLWHELXOEJZ-UHFFFAOYSA-N 2-nitrobenzoic acid Chemical class OC(=O)C1=CC=CC=C1[N+]([O-])=O SLAMLWHELXOEJZ-UHFFFAOYSA-N 0.000 description 1
- ZXVONLUNISGICL-UHFFFAOYSA-N 4,6-dinitro-o-cresol Chemical group CC1=CC([N+]([O-])=O)=CC([N+]([O-])=O)=C1O ZXVONLUNISGICL-UHFFFAOYSA-N 0.000 description 1
- WDYVUKGVKRZQNM-UHFFFAOYSA-N 6-phosphonohexylphosphonic acid Chemical compound OP(O)(=O)CCCCCCP(O)(O)=O WDYVUKGVKRZQNM-UHFFFAOYSA-N 0.000 description 1
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- VEXZGXHMUGYJMC-UHFFFAOYSA-M Chloride anion Chemical compound [Cl-] VEXZGXHMUGYJMC-UHFFFAOYSA-M 0.000 description 1
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- ZNZYKNKBJPZETN-WELNAUFTSA-N Dialdehyde 11678 Chemical compound N1C2=CC=CC=C2C2=C1[C@H](C[C@H](/C(=C/O)C(=O)OC)[C@@H](C=C)C=O)NCC2 ZNZYKNKBJPZETN-WELNAUFTSA-N 0.000 description 1
- YXHKONLOYHBTNS-UHFFFAOYSA-N Diazomethane Chemical compound C=[N+]=[N-] YXHKONLOYHBTNS-UHFFFAOYSA-N 0.000 description 1
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- KFZMGEQAYNKOFK-UHFFFAOYSA-N Isopropanol Chemical compound CC(C)O KFZMGEQAYNKOFK-UHFFFAOYSA-N 0.000 description 1
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- 238000000134 MTT assay Methods 0.000 description 1
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- 239000005864 Sulphur Substances 0.000 description 1
- 229910021626 Tin(II) chloride Inorganic materials 0.000 description 1
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- GSEJCLTVZPLZKY-UHFFFAOYSA-N Triethanolamine Chemical compound OCCN(CCO)CCO GSEJCLTVZPLZKY-UHFFFAOYSA-N 0.000 description 1
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- 238000000376 autoradiography Methods 0.000 description 1
- WPYMKLBDIGXBTP-UHFFFAOYSA-N benzoic acid Chemical compound OC(=O)C1=CC=CC=C1 WPYMKLBDIGXBTP-UHFFFAOYSA-N 0.000 description 1
- 150000001558 benzoic acid derivatives Chemical class 0.000 description 1
- AZWXAPCAJCYGIA-UHFFFAOYSA-N bis(2-methylpropyl)alumane Chemical compound CC(C)C[AlH]CC(C)C AZWXAPCAJCYGIA-UHFFFAOYSA-N 0.000 description 1
- SIPUZPBQZHNSDW-UHFFFAOYSA-N bis(2-methylpropyl)aluminum Chemical compound CC(C)C[Al]CC(C)C SIPUZPBQZHNSDW-UHFFFAOYSA-N 0.000 description 1
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- QAWTYRYXDYHQNU-UHFFFAOYSA-N diazathiane Chemical group NSN QAWTYRYXDYHQNU-UHFFFAOYSA-N 0.000 description 1
- 125000004177 diethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 description 1
- VAYGXNSJCAHWJZ-UHFFFAOYSA-N dimethyl sulfate Chemical compound COS(=O)(=O)OC VAYGXNSJCAHWJZ-UHFFFAOYSA-N 0.000 description 1
- OMBRFUXPXNIUCZ-UHFFFAOYSA-N dioxidonitrogen(1+) Chemical class O=[N+]=O OMBRFUXPXNIUCZ-UHFFFAOYSA-N 0.000 description 1
- 238000010494 dissociation reaction Methods 0.000 description 1
- 230000005593 dissociations Effects 0.000 description 1
- 238000001962 electrophoresis Methods 0.000 description 1
- 230000008030 elimination Effects 0.000 description 1
- 238000003379 elimination reaction Methods 0.000 description 1
- 230000032050 esterification Effects 0.000 description 1
- 238000005886 esterification reaction Methods 0.000 description 1
- 150000002169 ethanolamines Chemical class 0.000 description 1
- 239000002024 ethyl acetate extract Substances 0.000 description 1
- 125000002485 formyl group Chemical group [H]C(*)=O 0.000 description 1
- 125000000524 functional group Chemical group 0.000 description 1
- 239000007789 gas Substances 0.000 description 1
- 238000001502 gel electrophoresis Methods 0.000 description 1
- 229960003180 glutathione Drugs 0.000 description 1
- UYTPUPDQBNUYGX-UHFFFAOYSA-N guanine Chemical group O=C1NC(N)=NC2=C1N=CN2 UYTPUPDQBNUYGX-UHFFFAOYSA-N 0.000 description 1
- 238000010438 heat treatment Methods 0.000 description 1
- XLYOFNOQVPJJNP-ZSJDYOACSA-N heavy water Substances [2H]O[2H] XLYOFNOQVPJJNP-ZSJDYOACSA-N 0.000 description 1
- 125000004836 hexamethylene group Chemical group [H]C([H])([*:2])C([H])([H])C([H])([H])C([H])([H])C([H])([H])C([H])([H])[*:1] 0.000 description 1
- 210000005260 human cell Anatomy 0.000 description 1
- 238000005984 hydrogenation reaction Methods 0.000 description 1
- 230000007062 hydrolysis Effects 0.000 description 1
- 238000006460 hydrolysis reaction Methods 0.000 description 1
- 239000005457 ice water Substances 0.000 description 1
- 239000012442 inert solvent Substances 0.000 description 1
- 230000002401 inhibitory effect Effects 0.000 description 1
- 229910052740 iodine Inorganic materials 0.000 description 1
- 239000011630 iodine Substances 0.000 description 1
- 229910052742 iron Inorganic materials 0.000 description 1
- 229940087654 iron carbonyl Drugs 0.000 description 1
- 125000000959 isobutyl group Chemical group [H]C([H])([H])C([H])(C([H])([H])[H])C([H])([H])* 0.000 description 1
- 238000002955 isolation Methods 0.000 description 1
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- 238000011068 loading method Methods 0.000 description 1
- 238000004519 manufacturing process Methods 0.000 description 1
- 238000004949 mass spectrometry Methods 0.000 description 1
- RUZLIIJDZBWWSA-INIZCTEOSA-N methyl 2-[[(1s)-1-(7-methyl-2-morpholin-4-yl-4-oxopyrido[1,2-a]pyrimidin-9-yl)ethyl]amino]benzoate Chemical group COC(=O)C1=CC=CC=C1N[C@@H](C)C1=CC(C)=CN2C(=O)C=C(N3CCOCC3)N=C12 RUZLIIJDZBWWSA-INIZCTEOSA-N 0.000 description 1
- KFKXSMSQHIOMSO-UHFFFAOYSA-N methyl 2-oxoacetate Chemical compound COC(=O)C=O KFKXSMSQHIOMSO-UHFFFAOYSA-N 0.000 description 1
- CXKWCBBOMKCUKX-UHFFFAOYSA-M methylene blue Chemical compound [Cl-].C1=CC(N(C)C)=CC2=[S+]C3=CC(N(C)C)=CC=C3N=C21 CXKWCBBOMKCUKX-UHFFFAOYSA-M 0.000 description 1
- 229960000907 methylthioninium chloride Drugs 0.000 description 1
- KKZJGLLVHKMTCM-UHFFFAOYSA-N mitoxantrone Chemical compound O=C1C2=C(O)C=CC(O)=C2C(=O)C2=C1C(NCCNCCO)=CC=C2NCCNCCO KKZJGLLVHKMTCM-UHFFFAOYSA-N 0.000 description 1
- 229960001156 mitoxantrone Drugs 0.000 description 1
- 239000002808 molecular sieve Substances 0.000 description 1
- 125000000896 monocarboxylic acid group Chemical group 0.000 description 1
- 238000006396 nitration reaction Methods 0.000 description 1
- 229910017604 nitric acid Inorganic materials 0.000 description 1
- 239000002674 ointment Substances 0.000 description 1
- 239000008188 pellet Substances 0.000 description 1
- 239000003208 petroleum Substances 0.000 description 1
- 230000001766 physiological effect Effects 0.000 description 1
- 229910052697 platinum Inorganic materials 0.000 description 1
- 229920002857 polybutadiene Polymers 0.000 description 1
- 229910000027 potassium carbonate Inorganic materials 0.000 description 1
- 230000001376 precipitating effect Effects 0.000 description 1
- 229940002612 prodrug Drugs 0.000 description 1
- 239000000651 prodrug Substances 0.000 description 1
- 150000003147 proline derivatives Chemical class 0.000 description 1
- 125000001436 propyl group Chemical group [H]C([*])([H])C([H])([H])C([H])([H])[H] 0.000 description 1
- 125000006239 protecting group Chemical group 0.000 description 1
- YQUVCSBJEUQKSH-UHFFFAOYSA-N protochatechuic acid Natural products OC(=O)C1=CC=C(O)C(O)=C1 YQUVCSBJEUQKSH-UHFFFAOYSA-N 0.000 description 1
- UMJSCPRVCHMLSP-UHFFFAOYSA-N pyridine Natural products COC1=CC=CN=C1 UMJSCPRVCHMLSP-UHFFFAOYSA-N 0.000 description 1
- 238000006476 reductive cyclization reaction Methods 0.000 description 1
- 230000002829 reductive effect Effects 0.000 description 1
- 238000006798 ring closing metathesis reaction Methods 0.000 description 1
- 239000012146 running buffer Substances 0.000 description 1
- 238000012216 screening Methods 0.000 description 1
- 238000000926 separation method Methods 0.000 description 1
- RAGFPHFDFVNLCG-INYQBOQCSA-N sibiromycin Chemical compound O[C@@H]1[C@@](O)(C)[C@@H](NC)[C@H](C)O[C@H]1OC(C(=C1O)C)=CC(C2=O)=C1N[C@H](O)[C@H]1N2C=C(\C=C\C)C1 RAGFPHFDFVNLCG-INYQBOQCSA-N 0.000 description 1
- RAGFPHFDFVNLCG-UHFFFAOYSA-N sibiromycin Natural products OC1C(O)(C)C(NC)C(C)OC1OC(C(=C1O)C)=CC(C2=O)=C1NC(O)C1N2C=C(C=CC)C1 RAGFPHFDFVNLCG-UHFFFAOYSA-N 0.000 description 1
- 229910001961 silver nitrate Inorganic materials 0.000 description 1
- 239000002356 single layer Substances 0.000 description 1
- 229910052708 sodium Inorganic materials 0.000 description 1
- 239000001632 sodium acetate Substances 0.000 description 1
- 235000017281 sodium acetate Nutrition 0.000 description 1
- URGAHOPLAPQHLN-UHFFFAOYSA-N sodium aluminosilicate Chemical compound [Na+].[Al+3].[O-][Si]([O-])=O.[O-][Si]([O-])=O URGAHOPLAPQHLN-UHFFFAOYSA-N 0.000 description 1
- JVBXVOWTABLYPX-UHFFFAOYSA-L sodium dithionite Chemical compound [Na+].[Na+].[O-]S(=O)S([O-])=O JVBXVOWTABLYPX-UHFFFAOYSA-L 0.000 description 1
- 235000009518 sodium iodide Nutrition 0.000 description 1
- 159000000000 sodium salts Chemical class 0.000 description 1
- AKHNMLFCWUSKQB-UHFFFAOYSA-L sodium thiosulfate Chemical compound [Na+].[Na+].[O-]S([O-])(=O)=S AKHNMLFCWUSKQB-UHFFFAOYSA-L 0.000 description 1
- 235000019345 sodium thiosulphate Nutrition 0.000 description 1
- 239000001119 stannous chloride Substances 0.000 description 1
- 235000011150 stannous chloride Nutrition 0.000 description 1
- 230000003068 static effect Effects 0.000 description 1
- 238000006467 substitution reaction Methods 0.000 description 1
- 239000005720 sucrose Substances 0.000 description 1
- YBBRCQOCSYXUOC-UHFFFAOYSA-N sulfuryl dichloride Chemical compound ClS(Cl)(=O)=O YBBRCQOCSYXUOC-UHFFFAOYSA-N 0.000 description 1
- 239000001117 sulphuric acid Substances 0.000 description 1
- 239000006188 syrup Substances 0.000 description 1
- 235000020357 syrup Nutrition 0.000 description 1
- 239000003826 tablet Substances 0.000 description 1
- 150000003568 thioethers Chemical group 0.000 description 1
- 150000003573 thiols Chemical class 0.000 description 1
- 210000001541 thymus gland Anatomy 0.000 description 1
- HPGGPRDJHPYFRM-UHFFFAOYSA-J tin(iv) chloride Chemical compound Cl[Sn](Cl)(Cl)Cl HPGGPRDJHPYFRM-UHFFFAOYSA-J 0.000 description 1
- 238000013519 translation Methods 0.000 description 1
- PRYDGNPXVINHFJ-UHFFFAOYSA-N triethylphosphane;hydrobromide Chemical compound [Br-].CC[PH+](CC)CC PRYDGNPXVINHFJ-UHFFFAOYSA-N 0.000 description 1
- LENZDBCJOHFCAS-UHFFFAOYSA-N tris Chemical compound OCC(N)(CO)CO LENZDBCJOHFCAS-UHFFFAOYSA-N 0.000 description 1
- WKOLLVMJNQIZCI-UHFFFAOYSA-N vanillic acid Chemical compound COC1=CC(C(O)=O)=CC=C1O WKOLLVMJNQIZCI-UHFFFAOYSA-N 0.000 description 1
- TUUBOHWZSQXCSW-UHFFFAOYSA-N vanillic acid Natural products COC1=CC(O)=CC(C(O)=O)=C1 TUUBOHWZSQXCSW-UHFFFAOYSA-N 0.000 description 1
- 238000010626 work up procedure Methods 0.000 description 1
- 239000008096 xylene Substances 0.000 description 1
- NLIVDORGVGAOOJ-MAHBNPEESA-M xylene cyanol Chemical compound [Na+].C1=C(C)C(NCC)=CC=C1C(\C=1C(=CC(OS([O-])=O)=CC=1)OS([O-])=O)=C\1C=C(C)\C(=[NH+]/CC)\C=C/1 NLIVDORGVGAOOJ-MAHBNPEESA-M 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D519/00—Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups C07D453/00 or C07D455/00
Definitions
- This invention is concerned with certain novel pyrrolobenzodiazepine derivatives, with a method for their preparation and with pharmaceutical compositions containing them.
- a group of pyrrolo[2,l-c] [l,4]benzodiazepines are known antitumour antibiotics. These compounds are produced by various Streptomyces species and well-known members of this group include anthramycin, tomaymycin, DC-81, neothramycin and sibiromycin:
- This cross-linking could be reversed, that is the dimer could be released from the DNA, by incubating the cross-linked DNA at a pH of 10 for 12 hours at 25°C.
- Farmer et al dimers are linked through the 7-positions of the anthramycin tricyclic structures.
- PBD dimers having a linking group attached to the 8-positions of the PBD structures are capable of cross-linking double-stranded DNA significantly more readily than the dimers described in the Farmer et al paper.
- Our novel dimers have isohelicity with DNA and are capable of fitting snugly into the minor groove of the latter.
- PBD tricyclic structures may contain additional substituents in one or more of the 1, 2, 3, 6, 7, 9, and 11-positions and the C rings may optionally contain at least one further hetero ring atom
- X is -0-, -S- or -NH-
- R 1 is an alkylene (i.e. polymethylene) chain containing from 3 to 12 carbon atoms, which chain may, if desired, be interrupted by one or more hetero ⁇ atoms, and which chain may, if desired, contain one or more carbon-carbon double or triple bonds.
- Suitable substituents in the tricyclic rings include, for example, hydroxyl, alkoxy, such as methoxy, ethylidene and 2-acrylamidyl groups.
- Another preferred group of substituents have the formula:
- n is an integer from 1 to 6, and are substituted in the 2- and 2 ! - positions; it is generally required that the compounds according to the invention should be water soluble and such substituents, and also hydroxyl substituents in the 2- and 2'- positions, have a sub ⁇ stantial solubilising effect.
- Preferred compounds according to the invention are those in which the PBD structures have: methoxy substituents in the 7- and 7'- positions (derived from DC-81); " methoxy substituents in the 7-, 7'-, 11- and ll 1 - positions and ethylidene substituents in the 2- and 2'- positions (derived from Tomaymycin) ; and hydroxyl substituents in the 9- and 9'- positions, methoxy substituents in the 11- and 11'- positions, and 2- acrylamidyl substituents in the 2- and 2'- positions (related to Anthramycin) .
- Preferred linking groups are those in which X is -O- and R 1 is an alkylene chain containing from 3 to 6 carbon atoms or a chain of the formula -(CH 2)X-O-
- R 1 is propylene, i.e. -CH .CH .CH -
- R 1 chain is of suitable length and contains at least one rigid linkage, that is a double or triple bond
- the R 1 chain is of suitable length and contains at least one rigid linkage, that is a double or triple bond, may be capable of cross-linking two molecules of double- stranded DNA (i.e. intermolecular cross-linking).
- a method of preparing a PBD dimer of formula I which comprises:
- X has the above-stated meaning (i.e. -0-, -S- or
- R .2 is H or a desired substituent in the 6- or 6'- position of the PBD dimer
- R .3 is H or a desired substituent in the 7- or 7'- position of the PBD dimer
- R 4 is H or a desired substituent in the 9- or 9'- position of the PBD dimer, with a dihaloalkane derivative of the formula:
- R 1 has the above-stated meaning and X is a halogen atom (preferably iodine), by adding the dihaloalkane III slowly to a reaction mixture containing the benzoic acid derivative II to form a dimer acid compound of the formula:
- step (ii) esterifying the dimer acid of formula IV, (iii) nitrating the diester from step (ii) to obtain a dinitro-diester compound of the formula;
- R s is an alkyl group
- R is H or a desired substituent in the 1- or 1'- positi ⁇ n of the PBD dimer
- R v is H or a desired substituent in the 2- or 2'- position of the PBD dimer
- R ⁇ is H or a desired substituent in the 3- or 3'- -position of the PBD dimer
- step (vii) subjecting the diamino compound from step (vi) to ring closing conditions whereby a PBD dimer of formula I is obtained.
- the starting materials for this step that is the benzoic acid derivatives II and the dihaloalkane derivatives III are commercially available or can be prepared by routine procedures from commercially available compounds.
- the dihaloalkane • derivatives III include, of course, compounds in which the alkane chain is interrupted by one or more heteroatoms or by one or more double or triple bonds. Precursors of these compounds are commercially available, for example HO-(CH 2)X-0-(CH2)X-OH and HO-
- step (i) is preferably carried out in a two-phase reaction medium, that is a mixture of an organic solvent, such as tetrahydrofuran, in which both the reactants II and III are soluble, and an aqueous alkali, such as aqueous sodium hydroxide, a solution of the dihaloalkane III in the organic solvent being added slowly to the reaction medium which already contains the benzoic acid derivative II.
- a two-phase reaction medium that is a mixture of an organic solvent, such as tetrahydrofuran, in which both the reactants II and III are soluble
- an aqueous alkali such as aqueous sodium hydroxide
- the reaction is preferably carried out at an elevated temperature, for example from 60°C to the reflux temperature of the reaction mixture.
- the esterification may be carried out by any of the conventional procedures.
- a preferred method involves initial formation of the acid chloride using either oxalyl chloride or thionyl chloride in an inert solvent, such as tetrahydrofuran (THF) or benzene, followed by treatment with an excess of methanol to form the methyl ester.
- THF tetrahydrofuran
- benzene benzene
- the use of other alcohols, such as ethyl or propyl alcohol would form the corresponding ethyl or propyl esters.
- Nitration of the product of step (ii) may be effected by any of the standard procedures.
- a preferred method comprises the use of stannic chloride (SnCl 4) and fuming nitric acid in methylene chloride at
- NaNO 2/H2SO4 can also be used.
- Other nitronium salts, such as NO 2 " "PF6 ⁇ , can also be used and these are described in a paper by Effenberger and Geke, Synthesis. 40 (1975).
- Hydrolysis of the product of step (iii) may be carried out by any of the standard procedures.
- a preferred method comprises aqueous sodium hydroxide in THF at room temperature.
- Lithium hydroxide in aqueous methanol can also be used.
- Other methods include the use of a nucleophile, such as lithium chloride, in an aprotic solvent (eg DMF).
- a nucleophile such as lithium chloride
- an aprotic solvent eg DMF
- a mixture of (CH 3)3SiCl/Nal.in CH3CN can also effectively cleave esters.
- KO 2/18-crown-6 in benzene and DBN (l,5-diazabicyclo[4.3.0]non-5- ene)/xylene can also be used.
- the (2S)-pyrrolidine-2-carbaldehyde diethyl thioacetal VII required for this step may be prepared in five steps from L-proline or a suitably substituted proline by the method of Langley and Thurston, J. Qr ⁇ . Chem.. 52. 91 (1987).
- step (v) is preferably carried out under the same conditions, that is the addition of the acid chloride to a suspension of the diethyl- thioacetal and triethylamine in water.
- Another method involves the use of acetonitrile as solvent in which case the water can be omitted.
- step (vi) The reduction of the nitro groups of the product of step (v) to amino groups may be carried out by any of the standard procedures.
- a preferred method uses stannous chloride dihydrate (SnCl 2.2H20) in methanol.
- Other chemical reducing agents which can be used include, for example, iron/acetic acid/methanol, sodium dithionite (Na 2S2O3) in methanol, and iron carbonyl (Fe (CO) ).
- Sodium borohydride combinations such as NaBH 4/i-PrOH or NaBH4/Pd-C, can also be used.
- the final cyclization step is similar to the cyclization step for making PBDs described by Langley and Thurston, J. Or ⁇ . Chem.. 52. 91-97 (1987) and is preferably carried out under the same conditions, that is in the presence of mercuric chloride (HgCl 2) and calcium carbonate (CaCO 3) in a mixture of acetonitrile and water (preferably 4:1 by volume).
- HgCl 2 mercuric chloride
- CaCO 3 calcium carbonate
- the diaminothioacetal compound from step (vi) is reacted with sulphuryl chloride (SO 2CI2) in the presence of wet silica gel in a suitable organic solvent, such as dichloromethane.
- SO 2CI2 sulphuryl chloride
- 11- and 11'- thioether compounds are preferred compounds according to the invention and may be isolated and purified as such.
- the modified process requires two steps in order to obtain the imine-type compounds of formula I from the diaminothioacetal compounds obtained in step (vi), as against the single step of the cyclization procedure first described, the two step process can give a better overall yield than the one step process and requires a less complex isolation procedure for the desired product.
- the compounds according to the invention are shown in the imine form at the N10-C11- and NlO'-Cll'- positions.
- the imine form is converted to the carbinolamine form, that is
- compounds containing such sub ⁇ stituents in the 11- and 11'- positions are a preferred embodiment of the invention as they are generally more stable than the corresponding NlO-Cll imine compounds from which they are derived and since they are convertible to such imine compounds, they are believed to constitute useful pro-drugs.
- the imine form is also readily attacked by other nucleophilic reagents, such as ethylamine and thiophenol, or water-soluble sulphur-containing nucleophiles, such as cysteine or glutathione, to form substituents in the 11- position.
- nucleophiles containing polar functional groups can enhance the overall water-solubility of the PBD dimers.
- all of the Cll- substituents can be eliminated in order to reform the NlO-Cll imine species.
- step (viii) condensing the dinitro-diacid compound obtained from step (iv), or the diacid chloride obtainable from said dinitro-diacid, with an imino alcohol of the formula:
- step (x) reductively cyclizing the dialdehyde from step (ix) to form a PBD dimer of formula I (in the 10,11-carbinolamine form).
- the imino alcohol X is conveniently obtained by condensing methyl glyoxalate with ethanolamine or an appropriately substituted ethanolamine. This condensation may be carried out, for example, in the presence of methylene chloride and molecular sieves at room temperature.
- step (viii) may be carried out, for example, in the presence of methylene chloride and pyridine with cooling to 0°C.
- the reduction of the ester groups to aldehyde groups in step (ix) may be carried out using any of the reagents and conditions conventionally used for this purpose.
- a preferred procedure is to use di-isobutyl- aluminium hydride as the reducing agent in a toluene reaction medium at a substantially reduced temperature, for example -78°C.
- the final reductive cyclization, step (x) f may be carried out under mild conditions, for example by hydrogenation in the presence of Pd-C in methanol at room temperature or with stannous chloride (SnCl .2H O) in methanol at reflux temperature.
- a particularly preferred compound according to the invention is that in which, referring to formula I, there are methoxy substituents in the 7- and 7'- positions, X is 0 and R is propylene; this compound is referred to hereinafter as DSB-120. Its preparation is described in the Example below.
- the compound DSB-120 was characterised by X H- NMR, 3 C-NMR, infra red, and mass spectrometry.
- DSB-120 is a stable, pale yellow viscous oil, highly soluble in chloroform, methanol, and ethanol and sparingly soluble in water. It is isolated in the N10- Cll imine form after purification by column chromatography; treatment of the compound in this form with methanol forms the bis(CHS-methyl ether) which is characteristic of the PBD ring system.
- the PBD-dimer described by Farmer et al apparently required incubation at 65°C for one hour at a concentration of 250 uM to effect cross-linking of DNA, that is to say a substantially higher concentration of the PBD-dimer and more vigorous conditions (65°C as against 37°C) than are required for DSB-120.
- the adduct formed between DNA and DSB-120 is also substantially more stable than that formed by Farmer et al's PBD-dimer.
- Farmer et al reported electrophoretic evidence showing that their dimer adduct was dissociated, that is the dimer was released from the DNA, after treatment at pHIO for 12 hours at 25°C.
- pBR322 DNA was cross-linked with DSB-120 at a concentration of O.Ol ⁇ M and excess DSB-120 was then removed by precipitating and isolating the cross-linked DNA. The latter was then incubated at 37°C at pH values of 4.0, 7.0, 8.0, 9.0 and 10.0.
- DSB-120 has been evaluated in vitro in L1210, PC6 and CHI cell lines using a standard screening procedure.
- the table below indicates that with one exception (mitoxantrone/CHl) , DSB-120 is significantly more cytotoxic across all cell lines than a number of known antitumour agents. It is also noteworthy that the ICso values for DSB-120 in all cell lines are significantly lower than those for the parent PBD (DC-81) from which it is derived.
- a pharmaceutical composition comprising a PBD dimer of formula I above and an inert, physiologically compatible carrier.
- the pharmaceutical composition may take the form of an in ectable formulation, that is a solution in saline or saline containing a small proportion, say 10% by weight, of ethanol or another organic solvent; or a formulation for oral administration, such as a tablet, capsule, solution or syrup; or a composition for topical applicaton, such as a gel, cream or ointment.
- an in ectable formulation that is a solution in saline or saline containing a small proportion, say 10% by weight, of ethanol or another organic solvent
- a formulation for oral administration such as a tablet, capsule, solution or syrup
- a composition for topical applicaton such as a gel, cream or ointment.
- the compounds according to the invention are useful experimental reagents for molecular biologists since they can cross-link DNA in a substantially non- reversible manner at a concentration of as low as 0.001 ⁇ M. These compounds fluoresce upon binding to DNA and may be used to stain the nuclei of cells, thus being useful in histological-type studies.
- Vanillic acid (1) (lOg, 59.5mmol) was dissolved in tetrahydrofuran (THF) (100ml) and aqueous NaOH (0.5M, 225ml).
- THF tetrahydrofuran
- NaOH 0.5M, 225ml
- a solution of 1,3-diiodopropane (2) (8.8g, 29.7mmol) in THF (50ml) was added dropwise with vigorous stirring at 65°C over 4 hours and then refluxed for 48 hours. After cooling, the mixture was washed with hexane (3 x 100ml) and the THF removed by evaporation in vacuo.
- Oxalyl chloride (3.1g, 24.4mmol, 2.4 equiv.) was added to a stirred suspension of (3) (3.76g, lOmmol) and dimethyl formamide (DMF) (2 drops) in dry THF (25ml), and the stirring was continued for 6 hours.
- the THF was removed by evaporation in vacuo and the resultant solid quenched with dry methanol (60ml). After the addition was complete, the mixture was stirred for a further 2 hours followed by removal of the methanol.
- the resultant residue was triturated with water, and (4) was collected by filtration as a brown amorphous solid; yield: 3.8g (94%). m.p. 153-155°C. C 21H240 ⁇ calc. 404.1472, found 404.1457: MS (El):m/z
- MeOH (15ml) was added to the residue and the suspension filtered and/or directly loaded onto a chromatography column (silica gel, 400 mesh). The column was first eluted with ethyl acetate (HPLC grade) to remove the HgCl2 salts, and then with CHC13 (HPLC grade, 200ml).
- DNA cross-linking efficiency was evaluated using the method of Hartley et al (Analyt. Biochem., 12, 131-134 (1990)).
- the reaction of DSB-120 with double-stranded, end-labeled, pBR322 DNA in a concentration range of 0.001-100 ⁇ M was allowed to proceed in a triethanolamine/EDTA (25mM:lmM, pH7.2) buffer at 37°C. After lh incubation, the reaction was stopped by the addition of an equal volume of sodium acetate/EDTA (0.6M:20mM) buffer and tRNA (lOO ⁇ g/ml).
- the DNA was precipitated by the addition of 95% ethanol (3 vols), and the resulting pellet, after centrifugation and removal of the supernatant, was dried and lyophilized. Samples were redissolved in a strand separation buffer (lO ⁇ M of 30% DMSO/lml EDTA/0.04% bromophenol blue/0.04% xylene cyanol), heated to 90°C for two minutes to ensure denaturation, and then chilled in ice water immediately prior to gel electrophoresis.
- a strand separation buffer (lO ⁇ M of 30% DMSO/lml EDTA/0.04% bromophenol blue/0.04% xylene cyanol
- Controls consisting of undenatured samples were dissolved directly in loading buffer (lO ⁇ g of 6% sucrose/0.04% bromophenol blue) prior to loading.
- Electrophoresis was performed on 20cm submerged agarose gels (0.8%) at 40V for 16h.
- the gel and running buffer consisted of 40mM Tris, 20mM acetic acid and 2mM EDTA (pH 8.1).
- Autoradiography relative band intensities were determined by microdensitometry using a LKB ⁇ ltrascan-XL laser densitometer.
- the stability of the adduct to low pH and high temperature was also investigated.
- a sample of end- labelled linearised pBR322 DNA previously treated with DSB-120 was centrifuged to precipitate cross-linked DNA, and then unreacted DSB-120 was removed in the supernatant.
- the cross-linked DNA was.then incubated for 15 minutes in buffers at pH values 4.0, 7.0, 8.0, 9.0 and 10.0. Following the procedure of the cross- linking assay described above, no reversal of cross- linking was observed at these pH values. In addition, heating the adducts at 90°C for two minutes which is part of the assay protocol, also failed to reverse cross-linking.
- Example 3 9.2g of 1,4-diiodobutane were used in place of 1,3-diiodopropane; in Example 4, 9.6g of 1,5- diiodopentane; and in Example 5, 10.Og of 1,6- diiodohexane.
- R 1 is propylene, the 2- and 2'- positions are substituted by ethylidene groups, and the 7- and 7*- positions are substituted by methoxy groups, was prepared by a method generally similar to the method of Example 1 subject to the replacement of the reactant (2S)-pyrrolidine-2-carbaldehyde diethyl thioacetal (compound 7 of Example 1) by the compound, (2S)-(E,Z)-4 ethylidenepyrrolidine-2-carboxaldehyde diethyl thioacetal (16), of the formula:
- Compound 16 was prepared from (2S)-N-(benzoxy- carbonyl)-4-oxo-pyrrolidine-2-carboxylic acid (11) by the following reaction scheme:
- R' CH(SEt 2)2
- R 2 H (2S)-(E,Z)-N-(Benzoxycarbonyl-4-ethylidenepyrrolidine-2- carboxvlic acid (12)
- Oxalyl chloride (75g,0.59mol) was added dropwise over 30 minutes to a stirred solution of (2S)-(E,Z)-N-(benzoxy- carbonyl)-4-ethylidenepyrrolidine-2-carboxylic acid (12; 80g,0.27mol)dissolved in dry toluene (400ml) at 0°C (ice/water bath). Four drops of DMF was added and stirring continued for 12 hours at room temperature. Freshly distilled dry methanol (200mL) was added to the mixture and the reaction stirred for a further 4 hours.
- Ethanethiol (7.90g. 127mmol) was added to a stirred solution of the aldehyde (14;15g, 58mmol) in freshly distilled dichloromethane (40mL) under a nitrogen atmosphere. The mixture was stirred for a further 30 minutes followed by the addition of trimethylsilyl chloride (11.65g, 107mmol). The reaction was then stirred under nitrogen for a further 24 hours or until TLC (ethyl acetate/hexane 1:1) indicated that the reaction was complete. The mixture was then carefully neutralised with saturated aqueous NaHCO and then extracted with water (3 x 3OmL) .
- Example 1 The process of Example 1 was then followed to give 8,8'-[1,3-propanediyIbis(oxy) ]bis[ (E,Z)-2- ethylidene-7-methoxy-1,2,3,11a(S)-tetrahydro-5H- pyrrolo[2,l-c] [l,4]benzodiazepin-5-one], (17),as a light yellow oil.
- the Cbz-ester (20;3.51g, 12.6mmol) was dissolved in anhydrous toluene (80ml) and diisobutylaluminum hydride solution (4.5g, 31.5mmol, 21ml of a 1.5M solution in toluene) added dropwise over a period of 30min at -78°C (liq.N 2/acetone) under a N2 atmosphere.
- the mixture was maintained at the same temperature for a further 50min until TLC (EtOAc/hexane, 1:1) indicated complete loss of starting material.
- the mixture was quenched with methanol (20ml) followed by HC1 (1M, 35 ml) and allowed to warm to room temperature.
- Ethanethiol (l.lg, 17.9mmol), was added to a stirred solution of the Cbz-aldehyde (21;1.8g, 7.15mmol) in dry CHC1 (20ml) under a N atmosphere. The mixture was stirred for 40min, followed by the addition of trimethylsilyl chloride (1.93g, 17.8mmol), after a further 12h of stirring under N , the reaction mixture was carefully neutralized with saturated NaHCO solution and then extracted with water (3 X 20ml).
- IR Wat -V 3710-3140, 3055-2820, 1650, 1595, 1520, 1470, 1460, 1450, 1420, 1340, 1270, 1240, 1180, 1120, 1070, 1030, 980, 870, 840, 760 cm "1 .
- Day 0 Cells were set up at 10 4 mL in RPMI 1640 medium containing 10% horse serum.
- Day 0 Cells were set up at 3-5 X 10 4 /mL in Dulbecco's medium containing 20% horse serum.
- Day 0 Cells were set up in flasks (100-200 cells/ flask), in Dulbecco's medium containing 10% foetal calf serum, and left overnight to allow the cells to attach.
- Day 1 The test compound was added and left in contact with the cells for the duration of the experiment, at 37°C.
- Day 9 Colonies of cells were usually visible and were fixed in ethanol (100%), stained with methylene blue and counted.
- the PBD dimers were also tested for activity against K S62 human cell line; ICSO values were measured using a MTT assay following one hour exposure to test ligand.
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Abstract
There are disclosed, as novel compounds, pyrrolo [2,1-c][1,4] benzodiazepine (PBD) dimers of formula (I) where the PBD tricyclic structures may contain additional substituents in one or more of the 1, 2, 3, 6, 7, 9 and 11-positions and the C rings may optionally contain at least one further hetero ring atom, X is -O-, -S- or -NH-, and R1 is an alkylene chain containing from 3 to 12 carbon atoms, which chain may, if desired, be interrupted by one or more hetero-atoms and which chain may, if desired, contain one or more carbon-carbon double or triple bonds. These compounds are cytotoxic and have shown in vitro activity against a range of carcinoma cell lines.
Description
Ant1 -cancer pyrrolobenzodiazepine derivatives
This invention is concerned with certain novel pyrrolobenzodiazepine derivatives, with a method for their preparation and with pharmaceutical compositions containing them.
A group of pyrrolo[2,l-c] [l,4]benzodiazepines (FBDs) are known antitumour antibiotics. These compounds are produced by various Streptomyces species and well-known members of this group include anthramycin, tomaymycin, DC-81, neothramycin and sibiromycin:
ANTHRAMYCIN TOMAYMYCIN
DC-81 NEOTHRAMYCIN
SUBSTITUTE SHEET
see Remers, W.A. : Pyrrolo[l,4]benzodiazepines, The Chemistry of Antitumour Antibiotics. Vol.2, pp.28-92, Wiley-Interscience (1988). Their antitumour and antibacterial activity are thought to be a direct consequence of DNA-binding which may interfere with processes such as DNA replication or translation.
J.D. Farmer, Jr. et al. Tetrahedron Letters. Vol 29, No. 40, pp 5105-5108, 1988 have described the synthesis of a dimeric anthramycin analogue and its use to effect DNA-crosslinking. The Farmer et al paper discloses three dimers, that is compounds of the formula:
N(CH 3)(CH2)20- and -HN(CH2)3 N(CH3) (CH2)3NH-; it appears that the third of these compounds was not actually obtained by the synthesis described. The DNA cross-linking ability of the second compound, with the N-interrupted diether linkage, was examined. In order to obtain cross-linking, the dimer was heated with DNA at 65°C for 1 hour. An alkaline agarose gel assay (under conditions which protected the DNA) of the dimer- cross-linked DNA against uncross-linked DNA and psoralen-cross-linked DNA, showed that the DNA had been cross-linked by the dimer.
This cross-linking could be reversed, that is the dimer could be released from the DNA, by incubating the cross-linked DNA at a pH of 10 for 12 hours at 25°C.
It will be noted that the Farmer et al dimers
are linked through the 7-positions of the anthramycin tricyclic structures.
We have now found that PBD dimers having a linking group attached to the 8-positions of the PBD structures are capable of cross-linking double-stranded DNA significantly more readily than the dimers described in the Farmer et al paper. Our novel dimers have isohelicity with DNA and are capable of fitting snugly into the minor groove of the latter.
According to one aspect of the present invention, there are provided, as novel compounds, pyrrolo[2,l-c] [l,4]benzodiazepine (PBD) dimers of the formula;
where the PBD tricyclic structures may contain additional substituents in one or more of the 1, 2, 3, 6, 7, 9, and 11-positions and the C rings may optionally contain at least one further hetero ring atom, X is -0-, -S- or -NH-, and R1 is an alkylene (i.e. polymethylene) chain containing from 3 to 12 carbon atoms, which chain may, if desired, be interrupted by one or more hetero¬ atoms, and which chain may, if desired, contain one or more carbon-carbon double or triple bonds.
Suitable substituents in the tricyclic rings include, for example, hydroxyl, alkoxy, such as methoxy, ethylidene and 2-acrylamidyl groups. Another preferred
group of substituents have the formula:
where n is an integer from 1 to 6, and are substituted in the 2- and 2!- positions; it is generally required that the compounds according to the invention should be water soluble and such substituents, and also hydroxyl substituents in the 2- and 2'- positions, have a sub¬ stantial solubilising effect.
Preferred compounds according to the invention are those in which the PBD structures have: methoxy substituents in the 7- and 7'- positions (derived from DC-81);" methoxy substituents in the 7-, 7'-, 11- and ll1- positions and ethylidene substituents in the 2- and 2'- positions (derived from Tomaymycin) ; and hydroxyl substituents in the 9- and 9'- positions, methoxy substituents in the 11- and 11'- positions, and 2- acrylamidyl substituents in the 2- and 2'- positions (related to Anthramycin) .
Preferred linking groups are those in which X is -O- and R1 is an alkylene chain containing from 3 to 6 carbon atoms or a chain of the formula -(CH 2)X-O-
(CH 2)x-, where x is an integer of from 2 to 6, or a chain of the formula -(CH 2
XX-, where n is an integer from 1 to 5.
Whilst it has been demonstrated that a compound according to the invention in which R1 is propylene, i.e. -CH .CH .CH -, effectively cross-links the two strands of double helical DNA, that is it effects interstrand cross-linking, it is believed that compounds according to the invention in which the R1 chain is of suitable length and contains at least one rigid linkage, that is a double or triple bond, may be capable of cross-linking two molecules of double- stranded DNA (i.e. intermolecular cross-linking).
According to another aspect of the present
invention, there is provided a method of preparing a PBD dimer of formula I, which comprises:
(i) condensing a benzoic acid derivative of the formula:
R4
-NH-), R .2 is H or a desired substituent in the 6- or 6'- position of the PBD dimer, R .3 is H or a desired substituent in the 7- or 7'- position of the PBD dimer, and R4 is H or a desired substituent in the 9- or 9'- position of the PBD dimer, with a dihaloalkane derivative of the formula:
X-R1-X III
where R1 has the above-stated meaning and X is a halogen atom (preferably iodine), by adding the dihaloalkane III slowly to a reaction mixture containing the benzoic acid derivative II to form a dimer acid compound of the formula:
(ii) esterifying the dimer acid of formula IV, (iii) nitrating the diester from step (ii) to
obtain a dinitro-diester compound of the formula;
where Rs is an alkyl group,
(iv) hydrolysing the dinitro-diester compound of formula V to remove the esterifying groups and obtain the corresponding dinitro-diacid compound,
(v) condensing the dinitro-diacid compound from step (iv) with a (2S)-pyrrolidine-2-carbaldehyde diethyl thioacetal of the formula:
where R is H or a desired substituent in the 1- or 1'- positiόn of the PBD dimer, Rv is H or a desired substituent in the 2- or 2'- position of the PBD dimer, and Rβ is H or a desired substituent in the 3- or 3'- -position of the PBD dimer, to form a nitrothioacetal derivative of the formula:
(
(vii) subjecting the diamino compound from step (vi) to ring closing conditions whereby a PBD dimer of formula I is obtained.
The steps of the process according to the invention and the preferred reactants and reaction conditions for use therein, will now be described in greater detail.
(i) The starting materials for this step, that is the benzoic acid derivatives II and the dihaloalkane derivatives III are commercially available or can be prepared by routine procedures from commercially available compounds. The dihaloalkane •derivatives III include, of course, compounds in which the alkane chain is interrupted by one or more heteroatoms or by one or more double or triple bonds. Precursors of these compounds are commercially available, for example HO-(CH 2)X-0-(CH2)X-OH and HO-
(CH 2
) T-OH, and these can be readily converted to the corresponding dihalo compounds by standard procedures.
The condensation reaction of step (i) is preferably carried out in a two-phase reaction medium, that is a mixture of an organic solvent, such as tetrahydrofuran, in which both the reactants II and III are soluble, and an aqueous alkali, such as aqueous sodium hydroxide, a solution of the dihaloalkane III in the organic solvent being added slowly to the reaction medium which already contains the benzoic acid derivative II. We have found that by operating in this way the production of monoalkylation and elimination products (arising from the loss of HX) is minimised.
The reaction is preferably carried out at an elevated temperature, for example from 60°C to the reflux temperature of the reaction mixture.
(ii) The esterification may be carried out by any of the conventional procedures. A preferred method involves initial formation of the acid chloride using either oxalyl chloride or thionyl chloride in an inert solvent, such as tetrahydrofuran (THF) or benzene, followed by treatment with an excess of methanol to form the methyl ester. The use of other alcohols, such as ethyl or propyl alcohol, would form the corresponding ethyl or propyl esters.
Other methods for converting aromatic acids to the corresponding esters include the use of dimethyl sulphate/potassium carbonate/acetone which normally produces high yields of methyl esters in one step.- A solution of diazomethane (CH 2N2) gas in a solvent, such as ether, will also convert aromatic acids directly to the methyl ester. A conventional method of ester synthesis involves refluxing the aromatic acid with methanol or another appropriate alcohol in the presence of an acid catalyst, such as sulphuric acid. A number of more recent and more novel reagents for ester formation are described on pages 154-156 of the well- known book "Protective Groups in Organic Synthesis" by Theodora W. Greene (John Wiley & Sons, 1981).
(iii) Nitration of the product of step (ii) may be effected by any of the standard procedures. A preferred method comprises the use of stannic chloride (SnCl 4) and fuming nitric acid in methylene chloride at
-20°C.
A simple nitrating mixture of H 2SO-4/HNO3 or
NaNO 2/H2SO4 can also be used. Other nitronium salts, such as NO 2""PF6~, can also be used and these are described in a paper by Effenberger and Geke, Synthesis. 40 (1975).
(iv) Hydrolysis of the product of step (iii) may be carried out by any of the standard procedures. A preferred method comprises aqueous sodium hydroxide in
THF at room temperature.
Lithium hydroxide in aqueous methanol can also be used. Other methods include the use of a nucleophile, such as lithium chloride, in an aprotic solvent (eg DMF). A mixture of (CH 3)3SiCl/Nal.in CH3CN can also effectively cleave esters. KO 2/18-crown-6 in benzene and DBN (l,5-diazabicyclo[4.3.0]non-5- ene)/xylene can also be used. These methods and others are described in detail on pages 156-159 of the book by Theodora W. Greene referred to above.
(v) The (2S)-pyrrolidine-2-carbaldehyde diethyl thioacetal VII required for this step may be prepared in five steps from L-proline or a suitably substituted proline by the method of Langley and Thurston, J. Qrα. Chem.. 52. 91 (1987).
The condensation of the thioacetal VI with o_- nitrobenzoic acid derivatives of the formula:
to form PBD precursors of the formula:
has been described in said Langley and Thurston paper and the condensation of step (v) is preferably carried out under the same conditions, that is the addition of the acid chloride to a suspension of the diethyl- thioacetal and triethylamine in water. Another method involves the use of acetonitrile as solvent in which case the water can be omitted.
(vi) The reduction of the nitro groups of
the product of step (v) to amino groups may be carried out by any of the standard procedures. A preferred method uses stannous chloride dihydrate (SnCl 2.2H20) in methanol.
Other chemical reducing agents which can be used include, for example, iron/acetic acid/methanol, sodium dithionite (Na 2S2O3) in methanol, and iron carbonyl (Fe (CO) ). Sodium borohydride combinations, such as NaBH 4/i-PrOH or NaBH4/Pd-C, can also be used.
(vii) The final cyclization step is similar to the cyclization step for making PBDs described by Langley and Thurston, J. Orσ. Chem.. 52. 91-97 (1987) and is preferably carried out under the same conditions, that is in the presence of mercuric chloride (HgCl 2) and calcium carbonate (CaCO 3) in a mixture of acetonitrile and water (preferably 4:1 by volume). We have found that the reaction is complete in about 2.5 hours, as opposed to the 24 hours reported in the paper just referred to.
We have also found that it is desirable to use a different working up procedure from that described in the Langley and Thurston paper. On conclusion of the reaction, the solvents are removed by evaporation and the residue is filtered and/or directly loaded on to a silica gel column which is first eluted with ethyl acetate to remove mercuric salts. Further gradient elution with 3%-5% methanol in chloroform (HPLC grade) allows the product to be eluted in very high yields (80% or more compared with 15% or less using the work-up procedure of the paper) .
In a modification of the final cyclization step, the diaminothioacetal compound from step (vi) is reacted with sulphuryl chloride (SO 2CI2) in the presence of wet silica gel in a suitable organic
solvent, such as dichloromethane. This causes ring closure with the formation of an aminothioether structure in the 10,11- positions, that is
These 11- and 11'- thioether compounds are preferred compounds according to the invention and may be isolated and purified as such.
Alternatively they may be further treated to obtain the imine structure, -NH=CH-, in the 10, 11- positions by reaction with mercuric chloride or silver nitrate in a suitable solvent, for example aqueous methanol.
Although the modified process requires two steps in order to obtain the imine-type compounds of formula I from the diaminothioacetal compounds obtained in step (vi), as against the single step of the cyclization procedure first described, the two step process can give a better overall yield than the one step process and requires a less complex isolation procedure for the desired product.
In formula I, the compounds according to the invention are shown in the imine form at the N10-C11- and NlO'-Cll'- positions. In the presence of water, the imine form is converted to the carbinolamine form, that
is
and in the presence of alcohols RsOH, such as methanol, ethanol and propanol, or the corresponding thiols RSSH, the imine is converted into the analogous ether or thioether forms, that is
- NH - C - or -NH - C -
As already indicated, compounds containing such sub¬ stituents in the 11- and 11'- positions (with the nitrogen in the 10- and 10'- positions in the amine form) are a preferred embodiment of the invention as they are generally more stable than the corresponding NlO-Cll imine compounds from which they are derived and since they are convertible to such imine compounds, they are believed to constitute useful pro-drugs.
The imine form is also readily attacked by other nucleophilic reagents, such as ethylamine and thiophenol, or water-soluble sulphur-containing nucleophiles, such as cysteine or glutathione, to form substituents in the 11- position. Such nucleophiles containing polar functional groups can enhance the overall water-solubility of the PBD dimers. Under the appropriate conditions, all of the Cll- substituents can be eliminated in order to reform the NlO-Cll imine species. To prepare PBD dimers according to the invention in which the C rings contain an oxygen ring atom requires modification of the process described above. Steps (i) to (iv) of the above process are used and the modified process then comprises:
(viii) condensing the dinitro-diacid compound
obtained from step (iv), or the diacid chloride obtainable from said dinitro-diacid, with an imino alcohol of the formula:
where R7 and Rβ have the above-stated meanings, to form a di-N-(2-nitrobenzoyl)oxazolidine ester of the formula:
(ix) reducing the ester groups of the nitrobenzoyl-oxazolidine ester of formula XI to aldehyde groups (-CHO) , and
(x) reductively cyclizing the dialdehyde from step (ix) to form a PBD dimer of formula I (in the 10,11-carbinolamine form).
The imino alcohol X is conveniently obtained by condensing methyl glyoxalate with ethanolamine or an appropriately substituted ethanolamine. This condensation may be carried out, for example, in the presence of methylene chloride and molecular sieves at room temperature.
The condensation of step (viii) may be carried out, for example, in the presence of methylene chloride and pyridine with cooling to 0°C.
The reduction of the ester groups to aldehyde groups in step (ix) may be carried out using any of the reagents and conditions conventionally used for this purpose. A preferred procedure is to use di-isobutyl- aluminium hydride as the reducing agent in a toluene reaction medium at a substantially reduced temperature, for example -78°C.
The final reductive cyclization, step (x)f may be carried out under mild conditions, for example by hydrogenation in the presence of Pd-C in methanol at room temperature or with stannous chloride (SnCl .2H O) in methanol at reflux temperature.
A particularly preferred compound according to the invention is that in which, referring to formula I, there are methoxy substituents in the 7- and 7'- positions, X is 0 and R is propylene; this compound is referred to hereinafter as DSB-120. Its preparation is described in the Example below.
The compound DSB-120 was characterised by XH- NMR, 3C-NMR, infra red, and mass spectrometry. DSB-120 is a stable, pale yellow viscous oil, highly soluble in chloroform, methanol, and ethanol and sparingly soluble in water. It is isolated in the N10- Cll imine form after purification by column chromatography; treatment of the compound in this form with methanol forms the bis(CHS-methyl ether) which is characteristic of the PBD ring system.
An in vitro DNA cross-linking assay by the method described by Hartley et al, Analyt. Biochem.. 12., 131-134 (1990) has established that DSB-120 completely cross-links pBR322 DNA at a concentration of 1.0 μM after incubation for one hour at 37°C; a significant level of cross-linking can still be observed with concentrations of DSB-120 as low as 0.001 μM (under the same incubation conditions). The DNA cross-linking efficiency of DSB-120 is also supported by thermal
denaturation data. Treatment of calf thymus DNA with DSB-120 at room temperature causes a 10°C increase in helix melting temperature, compared to an untreated control.
The PBD-dimer described by Farmer et al apparently required incubation at 65°C for one hour at a concentration of 250 uM to effect cross-linking of DNA, that is to say a substantially higher concentration of the PBD-dimer and more vigorous conditions (65°C as against 37°C) than are required for DSB-120.
The adduct formed between DNA and DSB-120 is also substantially more stable than that formed by Farmer et al's PBD-dimer. Thus Farmer et al reported electrophoretic evidence showing that their dimer adduct was dissociated, that is the dimer was released from the DNA, after treatment at pHIO for 12 hours at 25°C. pBR322 DNA was cross-linked with DSB-120 at a concentration of O.OlμM and excess DSB-120 was then removed by precipitating and isolating the cross-linked DNA. The latter was then incubated at 37°C at pH values of 4.0, 7.0, 8.0, 9.0 and 10.0. A cross-linking assay by the Hartley et al procedure referred to above showed that after 18 hours incubation at each of these pH's, no reversal of cross-linking had occurred. In fact, at the lowest pH (4.0), the DNA control started to show signs of degradation, whereas the cross-linked DNA appeared to remain static. The stability of the cross-linked DNA after 18 hours incubation at pH 10 is directly contrary to the dissociation of the Farmer et al adduct after incubation at pH 10 for 12 hours at 25°C.
Preliminary NMR data suggest that DSB-120 cross-links double-stranded DNA by binding across two guanine residues on opposite strands with two AT base- pairs in between.
The ICso (inhibitory concentration, 50%) of
DSB-120 has been evaluated in vitro in L1210, PC6 and
CHI cell lines using a standard screening procedure. The table below indicates that with one exception (mitoxantrone/CHl) , DSB-120 is significantly more cytotoxic across all cell lines than a number of known antitumour agents. It is also noteworthy that the ICso values for DSB-120 in all cell lines are significantly lower than those for the parent PBD (DC-81) from which it is derived.
According to a further aspect of the present invention, there is provided a pharmaceutical composition comprising a PBD dimer of formula I above and an inert, physiologically compatible carrier.
The pharmaceutical composition may take the form of an in ectable formulation, that is a solution in saline or saline containing a small proportion, say 10%
by weight, of ethanol or another organic solvent; or a formulation for oral administration, such as a tablet, capsule, solution or syrup; or a composition for topical applicaton, such as a gel, cream or ointment.
In addition to their physiological activity, the compounds according to the invention are useful experimental reagents for molecular biologists since they can cross-link DNA in a substantially non- reversible manner at a concentration of as low as 0.001 μM. These compounds fluoresce upon binding to DNA and may be used to stain the nuclei of cells, thus being useful in histological-type studies.
In order that the invention may be more fully understood the following examples are given by way of illustration only. Example 1
Preparation of 1.1'- Prooane-1.3- divldioxvbis(11a S)7-methoxv-l.2.3.lla-tetrahγdro-5H- pvrrolon.2-c1 ri.4lbenzodiazepin-5-one (DSB-120).
Reference will be made in the following description to the following reaction scheme
I -CHJCHJCHJ - I ( 2 )
8 : R N02 9 : R NH,
Vanillic acid (1), (lOg, 59.5mmol) was dissolved in tetrahydrofuran (THF) (100ml) and aqueous NaOH (0.5M, 225ml). A solution of 1,3-diiodopropane (2) (8.8g, 29.7mmol) in THF (50ml) was added dropwise with vigorous stirring at 65°C over 4 hours and then refluxed for 48 hours. After cooling, the mixture was washed with hexane (3 x 100ml) and the THF removed by evaporation in vacuo. The aqueous residue was acidified to pH 1 with HC1 (36%) and the resultant precipitate was filtered and recrystallised from acetic acid to afford (3) as an off-white amorphous solid; yield: 7.4g (66%), m.p. 238-240°C. MS (El): m/z (relative intensity) = 376 (M~", 28), 360 (3), 249 (2), 209 (45), 165 (29), 153 (16), 151 (19), 137 (19), 121 (7), 78 (15), 44 (100). IR (KBr): V = 3600-2000, 1680 (C=0), 1600 (C=C), 1515, 1465, 1430, 1345, 1310, 1270, 1225, 1180, 1140, 1115, 1030, 990, 970, 950, 925, 875, 850, 825, 765, 725, 645 cm —a. ^H NMR (DMSO-d ) δ = 2.23 (t, 2H,J=6Hz), 3.80 (s.
6H), 4.20 (t, 4H, J=6Hz), 7.09 (d, 2Ha.-com, J=8.4Hz),
7.45 (d, 2H >ro , J=1.8Hz) 7.54 (d, 2Harom, J=8.4Hz,
1.8Hz fine coupling), 12.76 (bs, 2H oid). X3C NMR
(CDC1 3): δ=28.4, 55.4, 64.8, 111.9, 112.0, 122.9,
123.0, 148.3, 151.6, 167.0.
(ii) 1' .3'-Bis (2-methoxv-4-methoxvcarbonvlPhenoxv) propane (4)
Oxalyl chloride (3.1g, 24.4mmol, 2.4 equiv.) was added to a stirred suspension of (3) (3.76g, lOmmol) and dimethyl formamide (DMF) (2 drops) in dry THF (25ml), and the stirring was continued for 6 hours. The THF was removed by evaporation in vacuo and the resultant solid quenched with dry methanol (60ml). After the addition was complete, the mixture was stirred for a further 2 hours followed by removal of the methanol. The resultant residue was triturated with
water, and (4) was collected by filtration as a brown amorphous solid; yield: 3.8g (94%). m.p. 153-155°C. C 21H240β calc. 404.1472, found 404.1457: MS (El):m/z
(relatively intensity) = 404 (M*, 92), 373 (19), 256 (3), 223 (100), 195 (49), 191 (58), 171 (18), 164 (39), 151 (51), 135 (12), 119 (20), 107 (11), 85 (61), 83 (90), 59 (23), 43 (24). IR (KBr):V= 2940, 1710 (C=0), 1600 (C=C), 1510, 1460, 1435, 1410, 1340, 1290, 1270, 1215, 1180, 1130, 1100, 1060, 1025, 975, 870, 760, 720 cm"1. ^Η NMR (CDC1 3): δ = 2.39-2.43 (m, 2H), 3.89
(s, 6H), 3.90 (s, 6H), 4.30 (t, 4H, J=6.1Hz), 6.93 (d, 2H, J=8.5Hz), 7.54 (d, 2H, J=2.0Hz), 7.64 (dd, 2H, J=8.5Hz, fine coupling = 2.0Hz). "c NMR (CDC13): δ = 28.9. 52.0, 56.0, 65.4, 111.7, 112.3, 122.8, 123.5, 148.9, 152.2, 166.9.
(iii) 1' .3'Bis(2-methoxy-4-methoxycarbonvl-5-nitro- phenoxv)propane (5)
A freshly prepared mixture of SnCl (4.6g, 17.7mmol) and fuming nitric acid (1.42g, 22.5mmol) in CH 2CI2 (5ml) was added dropwise over 5 minutes with stirring to a solution of the methyl ester (4; 2.85g, 7.1mmol) in CH 2CI2 (60ml) at -25°C (dry ice/CCl4). The mixture was maintained at the same temperature for a further 10 minutes, quenched with water (150ml), and then allowed to return to room temperature. The organic layer was separated and the aqueous phase extracted with ethyl acetate (2 x 100ml). The combined organic phase was dried (Na SO ) and evaporated in vacuo to afford the nitro dimer methyl ester (5) as a brown gum (3.0g) which was recrystallised from ethyl acetate/hexane to afford yellow prisms; 2.97g (85%); m.p. 165-168°C. C 21H22N2O12 Calc. 494.1173, found 494.1170. MS (El):m/z
(relative intensity) = 494 (M*, 94), 463 (14), 449 (8), 404 (3), 285 (3), 268 (28), 267 (29), 240 (32), 236 (68), 222 (94), 207 (6), 194 (45), 164 (19), 151 (15),
122 (14), 109 (9), 86 (47), 84 (73), 75 (12), 59 (29), 49 (100), 41 (73). IR (KBr):1^= 2940, 1710 (C=0), 1600 (C=C), 1575, 1520 (NO 2), 1420, 1355 (NO2), 1280, 1250,
1210, 1175, 1140, 1045, 990, 960, 870, 830, 750 cm-1. XH NMR (CDC1 3); δ = 2.43 (m, 2H), 3.90 (s, 6H), 3.95
(s, 6H), 4.32 (t, 4H, J=6.0Hz), 7.06 (s, 2H) , 7.49
(s, 2H). 13C NMR (CDC1 3): δ = 28.6, 53.3, 56.6, 65.6,
108.1, 110.9, 121.9, 149.5, 152.8, 167.0.
(iv) 1' .3'-Bis(4-carboxy-2-methoxy-5-nitro- phenoxy)propane (6)
To a solution of (5) (0.7g, 1.4mmol) in THF (20ml) was added aq. NaOH (1M, 10ml) and the reaction mixture stirrer at room temperature for 6 hours until TLC (EtOAc/hex Λe, 1:1) indicated that reaction was complete. The THF is removed by evaporation in vacuo. and the resultant residue acidified to pH 1 with HC1 (35%). The precipitate is collected by filtration and dried to afford (6) as a yellow solid; yield: 0.62g (94%). m.p. 243-246°C. MS (El): m/z (relative intensity) = 467 (MH^-,1), 450 (1), 436 (3), 423 (8), 378 (4), 268 (1), 255 (4), 236 (4), 210 (7), 194 (2), 182 (7), 164 (14), 153 (2), 123 (3), 91 (6), 77 (3), 55 (5), 44 (100). IR (KBr):V= 3620-2280, 1700 (C=0), 1595 (C=C), 1570, 1515 (NO 2), 1460, 1415, 1350 (NO2) 1270, 1210,
1180, 1135, 1045, 930, 880, 810, 750, 730, 645cm"1. XH- NMR(DMSO-d 6): δ = 2.25 (t, 2H, J=5.9Hz), 3.90 (s, 6H) ,
4.27 (t, 4H, J=5.9Hz), 7.29 (s, 2Haromaci.c), 7.62 (s,
2Hαroπa -.-Lc), 13.6 (bs, 2H-----C.-------.----C:). 13C-NMR (DMSO-d6) :δ =
28.0, 56.3, 65.7, 108.0, 111.2, 121.1, 141.3, 149.1, 151.7, 165.9.
(v) 1.1'-Propane-1.3-diyldioxγbis(2-nitro-5-methoxγ-l.4- phenylene)bis(carbonyl)bisrpγrrolidine-2-carbalde- hvde di(ethylthio)acetan (8)
Dimethyl formamide (2 drops) was added to a
stirred suspension of (6) (0.5g, 1.07mmol) and oxalyl chloride (0.34g, 2.69mmol, 2.5 equiv. ) in dry THF (15ml) and the stirring was continued for 4 hours. The THF was removed by evaporation in vacuo. and the resultant yellow solid was dissolved in dry THF (10ml) and added dropwise over a period of 25 min to a vigorously stirred suspension of (2S)-pyrrolidine-2-carbaldehyde diethyl thioacetal (0.55g, 2.68mmol, 2.5 equiv; prepared in five steps from (S)-proline by the method of Langley and Thurston, J. Orα. Chem.. 52. 91 (1987)), triethylamine (0.46g. 4.5mmol, 4.2 equiv.) and ice/water (0.6ml) cooled in an ice bath. After addition was complete, the mixture was warmed to room temperature and stirred for a further 1.5 hours. After removal of the THF by evaporation in vacuo. the residue was diluted with water (2 x 50ml) and extracted with ethyl acetate (3 x 25ml). The combined organic phase was washed with sat. NaHCO solution (2 X 25ml), dilute HC1 (2M, 2 X 25ml) and brine (3 X 25ml), dried (anhyd. MgSO ) and the solvent then removed by evaporation in vacuo to afford a dark red oil which was purified by flash chromatography (ethyl acetate/hexane, 1:1; TLC: ethyl acetate/hexane, 3:2) to afford the diamide (8) as a pale yellow oil. Yield: 0.53g (58%). IR (neat) :tf2930, 1625 (C=0), 1570 (C=C), 1510 (NO 2), 1445, 1420, 1370, 1330, (NO2), 1270, 1215,
1050, 750cm"1. 1H-NMR (CDC1 3) δ = 1.25-1.38 (m,14H),
1.76-2.47 (m, 8H), 2.67-2.87 (m,8H), 3.21-3.30 (m, 4H), 3.95 (s, 6H) 4.30-4.35 (m, 4H) , 4.67-4.74 (m, 2H), 4.87 (d, 2H, J=3.9Hz), 6.83 (s,2Haromat: ±. t~),7.72 (s,
2Haromatic). 13CNMR δ = (CDC13) 15.0, 24.6, 26.3, 26.6,
27.2, 50.2, 52.8, 56.5, 61.1, 65.6, 108.4, 109.3, 128.5, 137.2, 148.2, 154.5, 166.5.
(vi) 1.1'-Propane-1.3-divldioxvbisf2-amino-5-methoxy-l. 4-phenvlene)bis(carbonvl)bisrpvrrolidine-2- carbaldehvde-di(ethvlthio)acetal1 (9)
A solution of the dinitro thioacetal (8)
(0.5g, 0.59mmol) and SnCl 2.2H2O (1.37g, 6.0mmol) in methanol (15ml) was refluxed for 40 min until TLC (ethyl acetate/hexane, 4:1) indicated that the reaction was complete. The solvent was removed by evaporation in vacuo and the residue cooled to 0°C and neutralised with sat. NaHCO 3. The resulting solid was then triturated with ethyl acetate (2x50ml) and the mixture was stirred at room temperature for 1 hour. The suspension was filtered through a short bed of celite, which was rinsed with more ethyl acetate (2x50ml). The combined filtrate was separated and the organic phase was evaporated in vacuo to afford the diamino thioacetal (9) as a light yellow foam. Further purification by flash chromatography (ethyl acetate, 100%) afforded a yellow oil contaminated with a small amount of solid stannic salts, which was used directly for the next step. Yield: 0.3g (65%). IR (neat) V = 3425 and 3315 ( Ha), 2930, 1620, 1590, 1505, 1460, 1455, 1400, 1260, 1165, 1030, 750 cm"1.
(vii) 8.8'-T1.3-Propanedivlbis(oxv) IbisH-methoxv- 1.2 3.11a(S)-tetrahvdro-5H-pvrrolor2.1-c1 T1.41benzodiazepin-5-one1 (10.DSB-120)
A solution of the diamino thioacetal (9)
(0.3g, 0.39mmol), HgCl 2. (0.52g, 1.92mmol, 5 equiv.), and
CaCO 3 (0.19g, 1.92mmol, 5 equiv.) in CH3CN/H2O (4:1,
15ml) was slowly stirred at room temperature for 2.5 hours until TLC (MeOH/CHCl 3, 1:4) indicated complete loss of starting material. After removal of the
CH 3CN/H20 by evaporation in vacuo at room temperature,
MeOH (15ml) was added to the residue and the suspension filtered and/or directly loaded onto a chromatography column (silica gel, 400 mesh). The column was first eluted with ethyl acetate (HPLC grade) to remove the
HgCl2 salts, and then with CHC13 (HPLC grade, 200ml).
Gradient elution with MeOH/CHCl 3 (3-5% MeOH) afforded
(10) as a light yellow oil. Yield 0.17g (83%). H NMR (CDC13); δ. = 2.01- 2.17 (m,2H), 2.28-2.45 (m, 8H), 3.50-3.87 (m, 6H), 3.92 (s, 6H), 4.22-4.33 (m, 4H), 6.85 (s, 2H), 7.5 (s, 2H) , 7.66 (d, 2H, J=4.4Hz). 13C NMR (CDC1 ): 6 = 24.2, 28.8, 29.6, 46.7, 53.7, 56.1, 65.4, 110.7, 111.6, 120.3, 140.6, 147.8, 150.6, 162.4, 164.6. MS (FAB): m/z=533 (M""+l). Conversion to the Cll(S) methyl ether form was effected by dissolving in CH OH: XH-NMR (CD3OD) : δ = 2.0-2.3 (m, 10H, ) 3.3 (s, 6H), 3.47-3.72 (m, 6H), 3.8 (s, 6H), 4.22-4.23 (m, 4H), 4.40 (d, 2H, J=9.0Hz), 6.61 (s, 2H), 7.15 (s, 2H), 7.90 (s,2H). A small amount of the Cll(R) isomer was evidence from signals at 4.58 (s, Hll), 6.35 (s) and
Example 2
DNA cross-linking efficiency was evaluated using the method of Hartley et al (Analyt. Biochem., 12, 131-134 (1990)). The reaction of DSB-120 with double-stranded, end-labeled, pBR322 DNA in a concentration range of 0.001-100μM was allowed to proceed in a triethanolamine/EDTA (25mM:lmM, pH7.2) buffer at 37°C. After lh incubation, the reaction was stopped by the addition of an equal volume of sodium acetate/EDTA (0.6M:20mM) buffer and tRNA (lOOμg/ml). The DNA was precipitated by the addition of 95% ethanol (3 vols), and the resulting pellet, after centrifugation and removal of the supernatant, was dried and lyophilized. Samples were redissolved in a strand separation buffer (lOμM of 30% DMSO/lml EDTA/0.04% bromophenol blue/0.04% xylene cyanol), heated to 90°C for two minutes to ensure denaturation, and then chilled in ice water immediately prior to gel electrophoresis.
Controls consisting of undenatured samples were dissolved directly in loading buffer (lOμg of 6% sucrose/0.04% bromophenol blue) prior to loading.
Electrophoresis was performed on 20cm
submerged agarose gels (0.8%) at 40V for 16h. The gel and running buffer consisted of 40mM Tris, 20mM acetic acid and 2mM EDTA (pH 8.1). Autoradiography relative band intensities were determined by microdensitometry using a LKB ϋltrascan-XL laser densitometer.
These experiments showed that DSB-120 completely cross-links the experimental DNA at a concentration of 1.0 μM and that significant cross- linking is observed down to a concentration of 0.001 μM.
The stability of the adduct to low pH and high temperature was also investigated. A sample of end- labelled linearised pBR322 DNA previously treated with DSB-120 was centrifuged to precipitate cross-linked DNA, and then unreacted DSB-120 was removed in the supernatant. The cross-linked DNA was.then incubated for 15 minutes in buffers at pH values 4.0, 7.0, 8.0, 9.0 and 10.0. Following the procedure of the cross- linking assay described above, no reversal of cross- linking was observed at these pH values. In addition, heating the adducts at 90°C for two minutes which is part of the assay protocol, also failed to reverse cross-linking.
Examples 3-5
Ex. 3: 8.8'-T1.4-ButanediyIbis (oxy )1bisT7- methoxy-1.2.3.11a(S)-tetrahydro-5H- pvrrolor2.1-c1 ϊ1.41benzodiazepin-5- onel: (AT-111)
Ex. 4: 8.8'-ri.5-Pentanediγlbis(oxγnbisr7- methoxy-1.2.3.11a(S)-tetrahydro-5H- pyrrolo 12.1-c1 T1.41benzodiazepin-5- onel: (AT-286)
Ex. 5: 8.8'-T1.6-Hexanediylbis(oxy Ibis \ 7- methoxy-1.2.3.11a(S)-tetrahγdro-5H- pyrrolof2.1-c1 T1.41benzodiazepin-5- onel: (DSB-131)
The above three compounds of formula I in which X is. -0-, R1 is butylene, pentylene, and hexylene, respectively, and the 7- and 7'- positions are substituted by methoxy groups, were prepared by the method described in Example 1 with the appropriate substitutions of the diiodoalkane reagent (2) . Thus in Example 3, 9.2g of 1,4-diiodobutane were used in place of 1,3-diiodopropane; in Example 4, 9.6g of 1,5- diiodopentane; and in Example 5, 10.Og of 1,6- diiodohexane.
The characteristics of these compounds and the yields of the final steps of the synthesis were as follows.
Ex. 3 XH-NMR (CDC1 ): δ = 2.02-2.17 (m), 2.29-2.34 (m,7H), 3.50-3.87 (m), 3.93 (s, 6H), 4.12-4.21 (m, 4H), 6.81 (s, 2H), 7.50 (s, 2H), 7.66 (d,2H, J=4.4Hz). X3C-NMR (CDC13): δ = 24.2, 25.7, 29.6, 46.7, 53.7, 56.1, 65.4,
110.7, 111.6, 120.3, 140.6, 147.8, 150.6, 162.4, 164.6, Yield 65% from 0.52g (0.65mmol).
Ex- 4 XH-NMR(CDC13): δ = 1.61-1.66(m) , 1.95-2.04(m), 2.28-2.30 (m), 3.57-3.84(m), 3.93(s), 3.97-4.07(m) , 6.80(s,2H), 7.51 (s,2H), 7.64(d, 2H, J=11.9Hz): X3C-NMR(CDC1 3): δ =
24.2, 22.5, 28.6, 29.7, 46.7, 53.7, 56.2, 68.5, 110.4, 111.5, 120.1, 140.6, 147.8, 150.8, 162.4, 164.7: Yield 60% from 0.53g (0.65mmol). [α]
CHC13).
Ex. 5 XH-NMR(CDC1 3): δ = 1.54-1.56 (m,4H), 1.89-2.08 (m,8H),
2.11-2.33 (m,4H), 3.47-3.85 (m,6H), 3.89 (s,6H), 4.03- 4.09 (m,4H), 6.80 (s,2H), 7.50(s,2H), 7.66(d,2H, J=4.4Hz): 13 C-NMR(CDC1 3): δ = 24.2, 25.7, 28.8,29.6,
46.6, 53.7, 56.2, 68.8, 110.4, 111.5, 120.1, 140.6,
8 .8 ' - r 1.3-Propanediγlbis (oxv) Ibis \ (Ε . Z ) - 2-ethvlidene-7-methoxv-l .2 .3 .11a ( S ) -tetra- •hγdro-5H-pvrrolo r 2 .1-c 1 \ 1.41benzodiazepin-5-
This compound of formula I in which X is -O-,
R1 is propylene, the 2- and 2'- positions are substituted by ethylidene groups, and the 7- and 7*- positions are substituted by methoxy groups, was prepared by a method generally similar to the method of Example 1 subject to the replacement of the reactant (2S)-pyrrolidine-2-carbaldehyde diethyl thioacetal (compound 7 of Example 1) by the compound, (2S)-(E,Z)-4 ethylidenepyrrolidine-2-carboxaldehyde diethyl thioacetal (16), of the formula:
Compound 16 was prepared from (2S)-N-(benzoxy- carbonyl)-4-oxo-pyrrolidine-2-carboxylic acid (11) by the following reaction scheme:
1 1
12: R'= COOH, R2 = CBZ 13: R'= COOCH 3, R2 = CBZ
14: R' = CHO, R2 = CBZ
15: R' = CH(SEt 2)2, Rz = CBZ
16: R' = CH(SEt 2)2, R2 = H
(2S)-(E,Z)-N-(Benzoxycarbonyl-4-ethylidenepyrrolidine-2- carboxvlic acid (12)
Potasiu t-butoxide (18.6g, 152mmol, 4.0 equiv) and tri- ethylphosphonium bromide (28.2g, 76mmol, 2.0 equiv) were added to a stirred solution of (2S)-N-(benzoxycarbonyl)- 4-oxo-pyrrolidine-2-carboxylic acid (ll;10.0g, 38mmol) in freshly distilled and dried (sodium) THF (300ml). The mixture was stirred at room temperature under dry nitrogen for 30 minutes and then refluxed for 6 hours. The resulting mixture was filtered and the filtrate evaporated in vacuo to afford a crude brown oil. Further purification by flash chromatography (1:1, ethyl acetate/hexane) gave 6.79g (56%) of a mixture of E and Z isomers as a golden yellow oil.
"■Ή-NMR (CDC13): δ=1.60-1.63 (m,3H.=CHCJi3) , 2.66-3.00 (m,2H,-N-CH 2-CO-£S2-), 3.98-4.20 (m,2H,-N-£H2τCO-CH2-),
4.50-4.58 (m,lH , -£fi-COOH), 5.09-5.28 (m,2H, -£H 2-O-
CO-), 5.41 (bs, .25-7.50 (m, 5H -c-om), 7.60
(rotomers): δ = (14.4, 14.7) ,[ (31.4,32.5) (35.4, 36.5)], [(47.8,48.3) (50.8,51.1)] [(58.3,58.5,58.7,59.0)], (67.3,67.5) , (118.0,118.4) , (127.9,128.4,128.5) , (132.8,132 .9),133.7, (136.3, 136.4), (154.5,155.6), (176.7,177.6); IR (neat film) nl=2500-3600, 1650-1750(C-O) ,1585, 1500, 1420,1350,1295,1230,1120,1050,1025,950,910,750,700;MS (ACE,isobutane) : m/z(relative intensity) = 275(M"",6) ,230 (8), 201 (4),186(26),140(70),96(15),91(100),65(22); MS(CI,isobutane)276(MH*),2 2
Methyl(2S)-(E,Z)-N-(benzoxycarbony1)-4-ethylidene- yrrolidine-2-carboxylate(13)
Oxalyl chloride (75g,0.59mol) was added dropwise over 30 minutes to a stirred solution of (2S)-(E,Z)-N-(benzoxy- carbonyl)-4-ethylidenepyrrolidine-2-carboxylic acid (12; 80g,0.27mol)dissolved in dry toluene (400ml) at 0°C (ice/water bath). Four drops of DMF was added and
stirring continued for 12 hours at room temperature. Freshly distilled dry methanol (200mL) was added to the mixture and the reaction stirred for a further 4 hours. The solvent was evaporated in vacuo and the residual oil dissolved in ethyl acetate (lOOmL), washed with saturated aqueous NaHCO (4 x 50mL), brine (lOOmL), then dried (MgSO 4) and the solvent evaporated in vacuo to afford 79g (100%) of 13 as a pale yellow oil;
2.83-3.00 (m,2H,-N-CH 2-CO-CH2-), 3.72 and 3.73 (s,3H, -
COOCg 3), 4.07-4.12 (m,2H,-N-CH2-CO-CH2), 4.46-4.62 (m, lH,-Cg-COOH), 5.04-5.11(m,2H,-CH 2-0-CO-), 5.40 (bs, IH,
=CH-CH 3), 7.27-7.38 (m,5Harom); 13C-NMR(CDC13) [E and Z isomers] (rotomers): δ=(14.5,14.7) ,[(31.7,32.6) (35.7, 36.5) ], [(47.8,48.4) (50.7,51.1)],52.2,53.6, [(58.5,58.7/ 58.9)], 67.1, [(117.7, 117.8, 118.2)], 127.8, 127.9, 128.4, [(133.1, 133.2)(134.0,134.1)], [(136.5,136.6)], [(154.3,154.5) (154.9,155.0)], 172.9; IR (neat film) iT = 2800-3100, 1745 (C=0), 1705 (C=0) ,1410,1350,1210,1180, 1115, 1025, 775, 700cm"1; MS (El): m/z (relative intensity) =289 (M"*,2), 244 (8), 230 (87), 186 (20), 154 (15), 91 (100), 85 (12), 65 (35); MS (CI, isobutane); 290 (MH*)
(2S)-(E,Z)-N-(Benzoxycarbony1)-4-ethylidenepyrrolidine-
2-carboxaldehγde(14)
A solution of (i-Bu) 2A1H [DIBAL-H] (lOOmL of a
1M solution in toluene) was added dropwise over a period of 45 minutes to a solution of the methyl ester (13;10g, 34.6mmol) in dry toluene (150mL) maintaining the temperature at -78°C (acetone/dry ice) under a nitrogen atmosphere. The reaction was stirred for a further 30 minutes and then the excess DIBAL-H carefully decomposed by the addition of methanol (lOOmL) followed by NaOH(0.2M, lOOmL). The mixture was allowed to warm to room temperature and the organic layer separated. The aqueous layer was adjusted to pH 11 (NaOH,0.5M) and
extracted with ethyl acetate (3 x lOOmL). The ethyl acetate extracts were combined, washed with brine (lOOmL), dried (MgSo 4) and the solvent evaporated in vacuo (<35°C) to afford 5.83g (65%) of 14 as a pale yellow oil. TLC: (ethyl acetate/petroleum ether 1:1) XH-NMR (CDC1 3): δ=1.60-1.63 (m,3H,
), 2.40-2.90
(m, 2H, -N-CH 2-C-CH2-), 4.08-4.12 (m, 2H,-N-£H2-C-CH2-),
4.15-4.67 (m, IH, -£H-COOH), 5.14-5.25 (m, 2H, -£H 2-O-
(d,0.35H,J=6.32Hz, Z isomer, 35%, -CH-CHO) and 9.56 (d, 0.65H, J=6.9Hz, E isomer, 65%, -CH-CHO); X3C-NMR (CDC1 ) [E and Z isomers] (rotomers): δ = 14.4, [(28.0,29.0) (32.0,33.0)], [ (48.0,48.5) (51.0,51.5) ] , (64.6,64.7), 67.4, [(118.4, 118.9)], 128.0, 128.2, 128.5, [(132.4, 133.4)], 136.3, [(155.0, 156.0)], [(199.3, 199.5)]' IR (neat film)V*=2700-3700, 2900, 1720 (C=0), 1700 (C=0), 1500, 1415, 1350, 1300, 1200, 1180, 1110, 1060, 920, 770, 735, 700cm~x; MS (El) m/z (relative intensity) =230(50,M"".-CHO) , 186 (37), 154 (9), 91 (100), 65 (21).
(2S)-(E,Z)-N-(Benzocarbony1)-4-ethylidenepyrrolidine-2- carbQ«fl-L<--tehy<fe diethyl thi<?ec<?tal ( 15 )
Ethanethiol (7.90g. 127mmol) was added to a stirred solution of the aldehyde (14;15g, 58mmol) in freshly distilled dichloromethane (40mL) under a nitrogen atmosphere. The mixture was stirred for a further 30 minutes followed by the addition of trimethylsilyl chloride (11.65g, 107mmol). The reaction was then stirred under nitrogen for a further 24 hours or until TLC (ethyl acetate/hexane 1:1) indicated that the reaction was complete. The mixture was then carefully neutralised with saturated aqueous NaHCO and then extracted with water (3 x 3OmL) . The combined aqueous phase was back-extracted with chloroform (3 x 20mL) and the combined organic phase dried (MgSO 4) and evaporated
in vacuo to afford 16.91g (80%) of the thioacetal (15) as a dark brown oil.
XH-NMR (CDC1 3) 6=1.09-1.39 (m, 6H, CH(SCH2CH3)2), 1.56-
1.65 ( , 3H, =CH-CH J), 2.40-2.60 (m,4H, CH(SCH2CH3)2),
2.60-2.81 ( , 2H, -N-CHϋ-C-CH--4), 4.05-4.20 (m,2H,-N-CH -
C-CH 2), 4.25-4.58 ( , 2H, CH-CH(SCH2CH3)2 and CH-
≤H(SCH 2CH-J)2), 5.02-5.15 (m, 2H, -CH-2-O-CO), 5.41 (bs,
), 7.12-7.41 (m, 5Haro ); IR (neat film) ir =
3200-3600, 2800-3100, 1700 (C=0), 1450, 1410, 1350, 1300, 1265, 1245, 1205, 1105, 1045, 975, 920, 750, 700, cm"1; MS (El):m/z (relative intensity) =365 (M""*;3), 303 (12), 292 (4), 230 (43), 186 (53), 168 (6), 152 (9), 135 (16), 107 (6), 91 (100), 75 (5), 65 (14); Calculated for C 19H27NO2S2 365.1483 found 365.1497.
(2S)-(E,Z)-4-Ethylidenepyrrolidine-2-carboxaldehyde diethvl thioacetal (16)
A solution of trimethylsilyl iodide (5.0mL, 35.4mM, 2.4 equiv) in freshly distilled dry dichloromethane (75mL) was added dropwise with stirring to a solution of 15;5.4g, 14.7mM, 1 equiv) and 2,3-dimethylbutene (5.0ml) in dichloromethane (50mL) under a nitrogen atmosphere. The mixture was stirred for 90 minutes or until reaction was complete as indicated by TLC (ethyl acetate/hexane, 1:9). After quenching with methanol (lOOmL) and evaporation of the solvent at 35°C in vacuo. the resulting oil was dissolved in ether (150mL) and extracted with HC1 (0.5M, 3 x 200 mL). The combined aqueous phase, after adjusting to pH8.0 with 2M NaOH,was back-extracted with ether (4 x 150mL) and the combined organic phase dried (MgSO 4) and evaporated in vacuo to afford a crude red oil which was purified by column chromatography (silica gel 400 grade, hexane/ethyl acetate, gradient 9.1 to 4:1) to afford 2.10g (65%) of the amine 16 as a dark brown oil. "■"H-NMR (CDC1 ): δ= 1.16-1.20 (m, 6H, CH(SCH CH ) )/ 1-55
(d, IH, J-6.8HZ, Z-isomer, 35%, =CH-CH ), 1.61 (d, 2H, J=6.8Hz, E-isomer, 65%
), 2.49-2.80 (m, 6H, -N-
CH 2-C-Cϋ2 and CH(SCH2CH3)2) , 3.24-3.70 (m, 3H, N-~C~H*2-C-
CH 2 and CH-CH(SCH2CH3)2), 3.75 (d,0.35H, J=8.2Hz, Z- isomer, 35%, CH-CH(SCH 2CH3)2) and 3.80 (d,0.65H,
J=8.1Hz, E-isomer, 65%, CH-CJHSCH 2CH3)2) , 5.32 (bs, IH,
=CH-CH ); 13C-NMR (CDC1 ) [E and Z isomers] (rotomers): δ=[14.5, 14.8, 14.6], [24.2, 24.4, 25.0], [33.7, 37.5], [47.8, 51.2], [56.5, 56.7], [61.9, 62.3], [115.0, 115.4], [139.1, 139.2]; IR (neat film) -tf=2950, 2920, 1575, 1450, 1360, 1175, 1100, 1050, 975, 845, 815, 780, 745, 695, 600cm"1;
The process of Example 1 was then followed to give 8,8'-[1,3-propanediyIbis(oxy) ]bis[ (E,Z)-2- ethylidene-7-methoxy-1,2,3,11a(S)-tetrahydro-5H- pyrrolo[2,l-c] [l,4]benzodiazepin-5-one], (17),as a light yellow oil.
""H-NMRtCDCl ):δ=1.67 and 1.73 (s, 6H, C=CH-£fl , E and Z), 2.28-2.45 (m, 2H), 2.95-3.05 (m, 4H), 3.83-3.88 (m, 4H), 3.92 (s, 6H), 4.20-4.30 (m, 4H), 5.58 (bs, 2H), 6.88 (s, 2H), 7.48 (s, 2H), 7.66 (d, 2H); MS (FAB): m/z =584 (M*-), 505, 490, 479, 465, 448, 425, 415, 359, 343, 329, 311, 301 (586 (M^+2) was also observed); C 33H360βN4.calculated. 584.2635, found 584.2743; Yield
55% from 0.80g.
Example 7
8.8'-fOxvbis(ethane)- .2'-divlbis (oxv)Ibisf7- methoxv-1.2.3.11a(S)-tetrahvdro-5H-pvrrolo- r2.1-c f1.41benzodiazepin-5-one1 (181
This compound of Formula 1 in which X is -0-, Rx is -(CH 2)2-0-(CH2)2-, and the 7- and 7'- p ^ositions are substituted by methoxy groups, was prepared by the method of Example 1, but using the compound 1,1*-
oxybis(2-iodethane) , 19, of the formula:
I-CH 2CH2-O-CH2CH2-I 19
in the first step in place of diiodopropane.
Compound (19) was prepared from l,l'-oxybis[2- chloroethane] as follows: l.l'-Oxvbisr2-iodoethane1 (19)
Sodium iodide (125g,0833mol, 7.1 eqiv) was added to a solution of l,l'oxybis[2-chloroethane] (16.65g, O.llmol) in dry acetone (300ml). The solution was then heated under reflux for 40 hours, cooled and the sodium salt filtered. The acetone was evaporated in vacuo. To the residue was added diethyl ether (300ml) and the organic layer washed with sat.aq. solution of sodium thiosulfate (3 x 50ml). The organic layer was dried (Na SO ) and evaporated in vacuo to afford a yellow oil, yield 29.72g (95%). MS (El): m/z (relative intensity) « 326 (M*,42), 277 (2), 199 (26), 155 (100), 127 (11); IR (KBr): 2960, 2880, 1465, 1435, 1420, 1360, 1310, 1270, 1190, 1165, 1110, 1035, 980, 775 cm"x. XH NMR (CDC1 3):δ = 3.26
(t, 4H, J=6.96 Hz), 3.77 (t, 4H, J=6.96 Hz).
The procedure of Example 1 was then followed to give compound (18) above as a light yellow oil. MS (FAB): m/z (relative intensity) =563, (M""-ι-l, 100).XH-NMR (CDC13) : 6=2.05-2.17 (m, 12H), 2.28-2.36 (m, 6H), 3.49- 3.89 (m, 6H), 3.92 (s, 6H) , 4.01 (t, 4H), 4.18-4.30 (m, 6H), 6.83 (s, 2H ), 7.50 (s,2H ), 7.66 (d, 2H, J=4.4Hz). 3C-NMR (CDC13): 6=24.16, 29.55, 46.70, 53.71, 56.12, 68.38, 69.62, 110.78, 111.62, 120.50, 140.47, 147.82, 150.59, 162.50, 164.61.
Example 8
8.8'-ri.3-Propanedivlbisfoxv)1bisr2(S).ll(R. S).lla(S)-7.11-dimethoxv-1.2.3.10.11.11a-hexa hvdro-2-hvdroxv-5H-PvrroloT7..1-r;1T1.41- benzodiazepin-5-onel (26)
This compound of formula I in which X is -O-,
R1 is propylene, the 2- and 2'- positions are substituted with hydroxyl groups and the 7-, 7'-, 11-, and 11'- positions (with the 10,11- and 10', Im¬ positions in the carbinolamine form) are substituted with methoxy groups, was prepared by a process analogous to that of Example 1 as follows.
Methyl(2S)-N-(Benzoxycarbony1)-(4S)-hydroxypyrrolidine- carboxylate (20)
DMF (2 drops) was added to a suspension of the Cbz-acid (10.6g, 40mmol) and oxalyl chloride (7.6g, 59.9mmol, 5.2ml) in anhydrous THF (40ml), and the mixture stirred at room temperature for 5h until TLC (EtOAc/hexane, 1:1) indicated complete reaction. The reaction mixture was evaporated in vacuo. the residue was then quenched with methanol (2 X 25ml) and the mixture stirred for a further lh. After evaporation of the solvent, the resultant residue was dissolved in EtOAc(2 X 50ml). The solution was washed with aq. NaHCO 3 (3 X 50ml), brine (2
X 25ml), and then dried (MgSO ) prior to evaporation in vacuo to afford 10.lg (90%) of pure 20 as a yellow oil. XH-NMR (CDC1 3): δ 2.01-2.12 (m, IH), 2.24-2.39 (m, 2H),
3.54 (s, 3H), 3.56-3.66 (m, 2H), 4.46-4.54 (m, 2H), 5.02-5.21 (m, 2H), 7.26-7.36 (m, 5H) . X3C-NMR (CDC1 3, rotamers in brackets): δ 38.4 (39.2), 52.14 (52.4), 54.6 (55.2)., 57.7 (57.9), 67.3, 69.3 (70.1), 127.8, 127.9, 128.0, 128.4, 128.5, 136.2 (136.4), 154.6 (155.1), 173.1 (173.2). IR (Neat) : V3600-3150, 2950-2800, 1745, 1680, 1420, 1350, 1200, 1160, 1120, 1080cm"1. MS (m/z) (El, relative intensity): 279 (64), 220 (77), 176 (79), 158 (9), 144 (22), 110 (16), 92 (57), 91 (100), 65 (36). HRMS Calcd.for 279.1107 (C 11H17NOS) , found 279.1106.
[α] D2° = -75.8° (c=2.6,CHCl3).
(2S)-N-(Benzoxycarbony1)-4(S)-hydroxypyrrolidine-2- carboxaldehvde (21)
The Cbz-ester (20;3.51g, 12.6mmol) was dissolved in anhydrous toluene (80ml) and diisobutylaluminum hydride
solution (4.5g, 31.5mmol, 21ml of a 1.5M solution in toluene) added dropwise over a period of 30min at -78°C (liq.N 2/acetone) under a N2 atmosphere. The mixture was maintained at the same temperature for a further 50min until TLC (EtOAc/hexane, 1:1) indicated complete loss of starting material. The mixture was quenched with methanol (20ml) followed by HC1 (1M, 35 ml) and allowed to warm to room temperature. The organic layer was separated and the aqueous phase extracted with EtOAc (4 X 50ml) . The combined organic phase was back washed with water (2 X 125ml), brine (2 x 75ml) dried (MgSO ) and the solvent removed in vacuo to afford a yellow oil, which was purified by chromatography (EtOAc/hexane, 6:4) to afford 1.9g (67%) of the corresponding aldehyde 21 as a light yellow oil. XH-NMR (CDC1 ): 6 1.91-2.27 (m, 2H), 2.60 (bs, IH), 3.52-3.68 (m, 2H), 4.21-4.55 (m, 2H), 5.05-5.20 (m, 2H), 7.29-7.40 (m, 5H) , 9.45 and 9.55 (d, IH, rotomers). X3C~NMR (CDC1 3, rotomers in brackets): δ 35.2 (36.0), 55.0 (55.7), 63.5 (63.6), 67.6, 69.1 (70.0), 127.8, 128.0, 128.1, 128.2, 128.5, 135.9 (136.1)^ 154.9, 199.3 (199.5). IR (Neat) ; V 3600- 3150, 3030-2800, 1730, 1685, 1415, 1150, 1110, 1050, 990, 750cmx. (2S)-N-(Benzoxycarbony1)-4(S)-hydroxypyrrolidine-2- carboxaldehvde diethvl thioacetal (22)
Ethanethiol (l.lg, 17.9mmol), was added to a stirred solution of the Cbz-aldehyde (21;1.8g, 7.15mmol) in dry CHC1 (20ml) under a N atmosphere. The mixture was stirred for 40min, followed by the addition of trimethylsilyl chloride (1.93g, 17.8mmol), after a further 12h of stirring under N , the reaction mixture was carefully neutralized with saturated NaHCO solution and then extracted with water (3 X 20ml). The combined aqueous phase was back-extracted with CHC1 (30ml) and the combined organic phase dried (MgSO 4) and evaporated in vacuo to afford the diethyl thioacetal 22, which was purified by flash chromatography (EtOAc/hexane, 1:1),
(2.21g, 87%). XH-NMR (CDC13): δ 1.06-1.34 (m, 6H) ,
2.15-2.75 (m, 6H) , 3.51-3.60 (m, IH), 3.68-3.81 (m, IH), 4.45-4.60 (m, 2H), 4.70 and 4.32 (d, IH, J=3.3Hz, rotamers), 5.01-5.38 (m, 2H), 7.27-7.40 (m, 5H). 13C-NMR (CDC1 3): δ 14.5, 14.8, 26.4, 26.9, 36.1 (36.6), 52.9
(53.8), 56.0 (56.5), 60.4 (60.0), 66.7 (67.4), 69.9 (69.5), 127.7, 127.9, 128.3, 128.4, 128.5, 136.6 (136.0), 155.1. MS (m/z relative intensity): (El) 355 (7), 337 (12), 308 (3), 220 (74), 176 (76), 135 (20), 91 (100), 65 (6). HRMS Calcd. for 355.1276 (C 17H2S03NS2) , found 355.1300.
(2S)-4(S)-Hydroxypyrrolidine-2-carboxaldehyde diethyl thioacetal (23)
A solution of Cbz-diethyl thioacetal (22;2.5g, 7.0mmol) in dry dichloromethane (15ml) was added dropwise over 5min to a stirred solution of trimethylsilyl iodide (2.8g, 14.0mmol) in CH 2CI2 (15ml) and the mixture stirred for 40min under N atmosphere or until reaction was complete as indicated by TLC (EtOAc/hexane, 3:7). After quenching with methanol (15ml) and evaporation at 35°C in vacuo. the resulting residue was washed with hexane (2 x 100ml), purified by chromatography (CH 3OH/CHC13, 1:4) to afford 23 (1.25g, 80%) as a dark red low melting solid. """H-NMR (CDC13): δ 1.25-1.32 (m, 6H), 1.92-2.02 (m, IH), 2.21-2.28 (m, IH), 2.62-2.85 (m, 4H), 3.30-3.58 (m, 2H), 3.93-4.02 (m, IH) , 4.08 (d, IH, J=8.0HZ), 4.55 (bs, IH), 5.55 (bs, 2H) . 13C-NMR (CDC1 3): δ 14.4, 14.5, 24.5, 25.1, 39.2, 54.4, 54.5,
61.2, 70.9. IR (Neat): '/ 3500-3060, 2960-2870, 1250- 1150, 1020 cm"1. MS (m/z, relative intensity) (CI, isobutane): 222 (100), 202 (3), 185 (3), 160 (37), 86 (11). HRMS Calcd. 221.0908 (C 9H19ONS2), found 221.0957.
1,1'-Propane-1,3-diyldioxybis(2-nitro-5-methoxy-l,4- phenylene)-bis(carbonyl)bis[4(S)-hydroxy-2(S)-pyrroli- dine-2-carboxaldehyde diethylthio acetall (24) Dimethyl formamide (2 drops) was added to a stirred
suspension of the dimer acid (0.46g, l.Ommol; see step (iv) of Example 1) and oxalyl chloride (0.318g, 2.5mmol, 2.5 equiv.) in dry THF (20ml), and stirring continued for 4 hours. After evaporation of the THF in vacuo. the resultant yellow solid was dissolved in dry THF (10ml) and added dropwise over a period of 30 minutes to a vigorously stirred suspension of (2S)-4(S)-hydroxy- pyrrolidine-2-carboxaldehyde diethyl thioacetal (23;0.55g, 2.5mmol, 2.5 equiv.), Et N (0.42g. 4.2mmol, 4.2 equiv.) and ice/water (0.6ml) cooled in an ice bath. After addition was complete, the mixture was warmed to room temperature and stirred for a further 1.5 hours. After removal of the THF by evaporation in vacuo, the residue was diluted with water (2 x 40ml) and extracted with ethyl acetate (4 X 25 ml). The aqueous phase was adjusted to pH3 with cone. HC1 and extracted with ethyl acetate (2 X 25ml). The combined organic phase was washed with water (3 X 25ml) and brine (3 X 25ml), dried (anhyd. MgSO ) and the solvent removed by evaporation in vacuo to afford a dark red oil which was purified by flash chromatography (ethyl acetate/hexane, 1:1; TLC: ethyl acetate/hexane, 3:2) to afford the bis(amide) 24 as a pale yellow oil (0.64g, 73% yield). XH-NMR (CDC1 ): 6 1.30-1.38 (m, 12H) , 2.20-2.87 (m, 16H), 3.05- 3.16 (m, 2H), 3.42-3.48 (m, 2H) , 3.95 (s, 6H), 4.30-4.45 ( , 6H), 4.83-4.89 (m, 4H) , 6.82 (s, 2H) , 7.64 (s, 2H) . X3C-NMR (CDC13): δ 14.9, 15.1, 26.3, 26.6, 28.9, 36.1, 52.4, 56.6, 58.3, 59.8, 65.1, 69.6, 108.0, 109,5, 127.8, 137.2, 148.2, 154.4, 167.0. IR (Neat):n" 3700-3160, 3040-2800, 1640, 1580, 1520, 1440, 1340, 1280, 1220, 1070, 970, 920, 870, 760 cm"1. MS (FAB): m/z=837 M""+l.
1,1*-Propane-1,3-diyldioxybis(2-amino-5-methoxy-l,4- phenylene)-bis(carbonyl)bis[4(S)-hydroxy-2(S)-pyrroli- ine-2-carboxaldehvde diethvlthio acetall 25
A solution of the dinitro thioaceral (24;0.5g, 0.57mmol)
and SnCl .2H O (1.34g, β.Ommol) in methanol (25 ml) was refluxed for 40 minutes until TLC (ethyl acetate/hexane, 4:1) indicated that the reaction was complete. The solvent was removed by evaporation in vacuo and the residue cooled to 0°C and treated with sat. NaHCO . The resulting solid was then triturated with ethyl acetate (3 X 50ml) and the mixture allowed to stir at room temperature for 1 hour. The suspension was filtered through a short bed of celite which was rinsed with ethyl acetate (2 X 50ml). The combined filtrate was evaporated in vacuo to afford the corresponding diamino thioacetal as a light yellow foam. Further purification by flash chromatography (ethyl acetate) afforded a yellow oil 25 (0.35g, 75% yield), which was used directly in the next step. XH-NMR (CDC1. ): δ 1.21-1.39 (m, 12H), 1.62-1.78 (bs, 2H), 2.01-2.18 (m, 2H), 2.21- 2.30 (m, 4H), 2.64-2.82 (m, 8H) , 3.31-3.41 (m, 2H), 3.63-3.68 (m, 2H), 3.78 (s, 6H), 4.17-4.52 (m, 10H), 4.64-4.66 (m, 2H) , 4.85-4.97 (m, 2H), 6.21 (s, 2H), 6.72 (s, 2H). IR Wat): -V 3710-3140, 3055-2820, 1650, 1595, 1520, 1470, 1460, 1450, 1420, 1340, 1270, 1240, 1180, 1120, 1070, 1030, 980, 870, 840, 760 cm"1.
8,8'-[l,3-Propanediylbis(oxy) ]bis[2(S) ,11(R,S) ,lla(S)- 7,11-dimethoxy-l,2,3,10,11,lla-hexahydro-2-hydroxy-5H- pyrrolol2.1-c1 fl.41benzodiazepin-5-one1 26
A solution of the diamino thioacetal (25;0.4g, 0.5mmol), HgCl. (O.δlg, 3.0mmol, 6.0 equiv.), and CaCo. (0.3g, 3.0mmol, 6.0 equiv.) in CH 3CN/H it0 (4:1, 15ml) was stirred slowly at room temperature for 2.5 hours until TLC (MeOH/CHCl 1:4) indicated a complete loss of starting material. After removal of the CH CN/H O by evaporation in vacuo at room temperature, the residue was dissolved in MeOH (15ml) and loaded directly onto a chromatography column. The column was first eluted with ethyl acetate (HPLC grade, 5 X 100ml) to remove the
HgCl2 salts, and then with CHC13 (HPLC grade, 2 X
100ml). Gradient elution with MeOH/CHCl 3 (6-10% MeOH) afforded 26 (0.18g, 57%) as a light yellow oil. XH-NMR (CD 3OD) mixture of Cll(R,S)-OCH isomers): δ 2.21-2.46
(m, -CH 2-CH2-CH2- and 4 X HI), 2.92-3.18 (m, 2 X H3),
3.60-3.98 (m, 2 X C7-OCH 3, 2 X Hlla) , 4.12-4.39 (m, O-
£H 2-CH2-CH2-0-, 2 X H2, 2X C2-OH), 4.41-4.58 (m, 2X
Hll), 6.39 and 7.38 (s, major; 4H) , 7.08 and 7.57 (s, minor, 4H) . Small amount of imine was observed as doublet at 6 8.20 for Cll and singlets at δ 6.60 and 7.18 for aromatic protons. 13C-NMR (CDC1.) (mixture of Cll (R,S) diastereomers and small amount of imine): δ 30.1, 39.6, 58.2, 66.2 (-CH -. weaker signals for diastereomers observed at 42.7, 55.0, 56.4, 66.7), 57.2, 59.7, 66.5, 69.4 (CH O- and -CH-, additional signal for diastereomer observed at 56.6), 88.6 (Cll), 102.9, 106.3, 108.7, 116.3 (C6 and C9), 141.7, 142.9, 146.3, 150.5, 154.3, 156.1, 159.2, 162.1 (C5a, C7, C8, C9a), 169.1 (C=0) other weak signals respectively the imine specie's were observed at, for example, 110.0, 113.9, 140.0, 146.0, 153.4, 168.9, 171.1 (Cll) for the aromatics. MS (FAB): m/z = 565 (M""-2 X CH 3OH).
Example 9
Experiments have been carried out to determine the concentration of PBD dimers according to the invention required to obtain 50% cross-linking of pBR332 DNA under standard conditions.
In vitro cytotoxicity studies have also been carried out. Compounds were evaluated in the following three cell lines: the L1210 mouse leukaemia (antimetabolite sensitive), the ADJ/PC6 mouse plasmacytoma (alkylating agent sensitive), and the human ovarian CHI cell line (platinum sensitive) . L1210 and ADJ/PC6 were grown as suspension cultures, whereas CHI was grown as a monolayer. Experimental protocols were as follows:
1210 Leukaemia
Day 0 Cells were set up at 104mL in RPMI 1640 medium containing 10% horse serum.
Day 1 Cells were counted to ensure that they were in the logarithmic phase of growth, and then treated with the test compound which was left in contact with the cells for 48h at 37°C.
Day 3 Cells were counted and the percentage inhibition of growth calculated by comparison with controls, which were treated with solvent alone.
ADJ/PC6 Plasmacytoma
Day 0 Cells were set up at 3-5 X 104/mL in Dulbecco's medium containing 20% horse serum.
Day I Cells were counted to ensure they were in the logarithmic phase of growth, and then treated with the test compound which was left in contact with the cells for 72H at 37°C.
Day 4 Cells were counted and the percentage inhibition of growth calculated by comparison with controls, which were treated with solvent alone.
CHI Human Ovarian
Day 0 Cells were set up in flasks (100-200 cells/ flask), in Dulbecco's medium containing 10% foetal calf serum, and left overnight to allow the cells to attach. Day 1 The test compound was added and left in contact with the cells for the duration of the experiment, at 37°C. Day 9 Colonies of cells were usually visible and were fixed in ethanol (100%), stained with methylene blue and counted.
Compounds were screened over a concentration range starting at 10~"*M and decreasing factors of ten until 10-11M. Each compound was dissolved in DMSO so
that the final concentration of DMSO was 0.05% in contact with the cells. Suspension cultures were counted using a Coulter counter and the CHI colonies counted with a colony counter. The index of activity is expressed as the ICso, that is the dose which inhibits cell growth by 50% compared to the solvent controls.
The PBD dimers were also tested for activity against K S62 human cell line; ICSO values were measured using a MTT assay following one hour exposure to test ligand.
The table below summarises the results (for DSB-120 this table repeats certain results previously given):
Claims
1. Pyrrolo [2,1-c] [1,4] benzodiazepine (PBD) dimers of the formula:
where the PBD tricyclic structures may contain additional substituents in one or more of the 1, 2, 3, 6, 7, 9 and 11- positions and the C rings may optionally contain at least one further hetero ring atom, X is -0-, -S- or -NH-, and R1 is an alkylene chain containing from 3 to 12 carbon atoms, which chain may, if desired, be interrupted by one or more hetero-atoms and which chain may, if desired, contain one or more carbon-carbon double or triple bonds.
2. PBD dimers according to claim 1, in which the tricyclic structures each contain one or more hydroxyl, alkoxy, ethylidene or 2-acrylamidyl substituents.
3. PBD dimers according to claim 1 or 2, which are substituted in the 2- and 2'- positions by hydroxyl groups or substituents of the formula:
where n is an integer from 1 to 6
4. PBD dimers according to any of claims 1 to 3, in which the 10,11- positions of the tricyclic structures are in the carbinolamine form:
OH - NH - C - 10 11
or a derivative thereof.
5. PBD dimers according to claim 4, in which the 11-position is substituted by an alkoxy or thioalkyl group.
6. PBD dimers according to claim 4,.in which the 11- position is substituted by the residue of a nucleophilic reagent.
7. PBD dimers according to claim 6, in which the nucleophilic reagent is ethylamine, thiophenol, or cysteine.
8. PBD dimers according to any of claim 1 to 7, in which Rx is -(CH 2)X-0-(CH2)9C-, where x is an integer from 2 to 6, or -(CH 2) where n is an integer from 1 to 5.
9. PBD dimers according to any of claims 1 to 8, in which the C rings contain an -O- ring atom in the 1- and 1'- positions.
10. The PBD dimer according to claim 1, in which there are methoxy substituents in the 7- and 7'- positions, X is 0 and Rx is propylene. 11. A method of preparing a PBD dimer of formula I specified in claim 1, which comprises:
(i) condensing a benzoic acid derivative of the formula:
where X has the meaning specified in claim 1, R is H or a desired substituent in the 6- or 6'- position of the PBD dimer, R3 is H or a desired substituent in the 7- or 7'- position of the PBD dimer, and R4 is H or a desired substituent in the 9- or 9'- position of the PBD dimer, with a dihaloalkane derivative of the.formula: .
X-Rx-X III
where R1 has the meaning specified in claim 1 and X is a halogen atom, by adding the dihaloalkane III slowly to a reaction mixture containing the benzoic acid derivative II to form a dimer acid compound of the formula:
IV,
{iii) nitrating the diester from step (ii) to obtain a dinitro-diester compound of the formula:
where R is an alkyl group,
(iv) hydrolysing the dinitro-diester compound of formula V to remove the esterifying groups and obtain the corresponding dinitro-diacid compound,
(v) condensing the dinitro-diacid compound from step (iv) with a (2S)-pyrrolidine-2-carbaldehyde diethyl thioacetal of the formula:
where R is H or a desired substituent in the 1- or 1'- position of the PBD dimer, Rτ is H or a desired substituent in the 2- or 2'- position of the PBD dimer. - 45 -
and R is H or a desired substituent in the 3- or 3'- position of the PBD dimer, to form a nitrothioacetal derivative of the formula:
(vi) reducing the nitro substituents of the derivative of formula VII to amino groups, and
(vii) subjecting the diamino compound from step (vi) to ring closing conditions whereby a PBD dimer of formula I is obtained.
9. A method according to claim 8, in which step (vii) is carried out so as to leave an -SC 2HS substituent in the 11- and 11'- positions of the PBD dimer obtained (the nitrogen in the 10- and Im¬ positions being in the amine form) .
10. A method according to claim 8 or 9, in which the condensation reaction of step (i) is carried out by slowly adding a solution of the dihaloalkane III in an organic solvent to a two-phase reaction medium containing the benzoic acid derivative II, the reaction medium comprising an organic solvent which is the same as or miscible with the organic solvent present in the dihaloalkane III solution and an aqueous alkali.
11. A pharmaceutical composition comprising a PBD dimer of formula I specified in claim 1 and an inert, physiologically acceptable carrier.
12. A pharmaceutical composition according to claim 1, in the form of an injectable solution, a formulation for oral administration, or a composition for topical application.
13. A method of treating cancer in a human or animal patient, which comprises the step of administering to said patient an effective amount of a pyrrolobenzodiazepine derivative as set forth in claim 1.
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
AU36435/93A AU3643593A (en) | 1992-03-09 | 1993-03-08 | Anti-cancer pyrrolobenzodiazepine derivatives |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
GB9205051.7 | 1992-03-09 | ||
GB929205051A GB9205051D0 (en) | 1992-03-09 | 1992-03-09 | Pyrrolobenzodiazepine derivatives,their preparation,and compositions containing them |
Publications (1)
Publication Number | Publication Date |
---|---|
WO1993018045A1 true WO1993018045A1 (en) | 1993-09-16 |
Family
ID=10711735
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/GB1993/000483 WO1993018045A1 (en) | 1992-03-09 | 1993-03-08 | Anti-cancer pyrrolobenzodiazepine derivatives |
Country Status (3)
Country | Link |
---|---|
GB (1) | GB9205051D0 (en) |
WO (1) | WO1993018045A1 (en) |
ZA (1) | ZA931637B (en) |
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