US20220049217A1

US20220049217A1 - Methods of producing rpe cells and compositions of rpe cells

Info

Publication number: US20220049217A1
Application number: US17/216,172
Authority: US
Inventors: Christopher Malcuit; Linda Lemieux; William Holmes; Pedro Huertas; Lucy Vilner
Original assignee: Astellas Institute for Regenerative Medicine
Current assignee: Astellas Institute for Regenerative Medicine
Priority date: 2007-10-12
Filing date: 2021-03-29
Publication date: 2022-02-17
Also published as: EP2209888A4; CN104946591A; CA2702386A1; IL246181A0; JP2011500024A; CA3177952A1; US20190062703A1; KR20100065373A; JP2017136088A; CA3006687A1; JP2022079484A; EP2209888A1; US20150086512A1; EP2209888B1; IL204956A; CA2702386C; JP6137626B2; ES2764473T3; KR20160045933A; KR101849336B1

Abstract

The present invention provides improved methods for producing RPE cells from human embryonic stem cells or from other human pluripotent stem cells. The invention also relates to human retinal pigmented epithelial cells derived from human embryonic stem cells or other human multipotent or pluripotent stem cells. hRPE cells derived from embryonic stem cells am molecularly distinct from adult and fetal-derived RPE cells, and are also distinct from embryonic stem cells. The hRPE cells described hemin are useful for treating retinal degenerative diseases.

Description

RELATED APPLICATIONS

This application claims the benefit of priority to U.S. provisional application Nos. 60/998,766, filed Oct. 12, 2007, 60/998,668, filed Oct. 12, 2007, 61/009,908, filed Jan. 2, 2008, and 61/009,911, filed Jan. 2, 2008. The disclosures of each of the foregoing applications are hereby incorporated by reference in their entirety.

BACKGROUND OF THE INVENTION

The retinal pigment epithelium (RPE) is the pigmented cell layer just outside the neurosensory retina. This layer of cells nourishes retinal visual cells, and is attached to the underlying choroid (the layer of blood vessels behind the retina) and overlying retinal visual cells. The RPE acts as a filter to determine what nutrients reach the retina from the choroid. Additionally, the RPE provides insulation between the retina and the choroid. Breakdown of the RPE interferes with the metabolism of the retina, causing thinning of the retina. Thinning of the retina can have serious consequences. For example, thinning of the retina may cause “dry” macular degeneration and may also lead to the inappropriate blood vessel formation that can cause “wet” macular degeneration).
Given the importance of the RPE in maintaining visual and retinal health, there have been significant efforts in studying the RPE and in developing methodologies for producing RPE cells in vitro. RPE cells produced in vitro could be used to study the developments of the RPE, to identify factors that cause the RPE to breakdown, or to identify agents that can be used to stimulate repair of endogenous RPE cells. Additionally, RPE cells produced in vitro could themselves be used as a therapy for replacing or restoring all or a portion of a patient's damaged RPE cells. When used in this manner, RPE cells may provide an approach to treat macular degeneration, as well as other diseases and conditions caused, in whole or in part, by damage to the RPE.
The use of RPE cells produced in vitro for screening or as a therapeutic relies on methods that can be used to produce large numbers of RPE cells in a systematic, directed manner. Such systematized differentiation methods would provide significant advantages over previous schemes based on, for example, spontaneous differentiation of RPE cells from transformed cell lines or other sources.

SUMMARY OF THE INVENTION

The present invention provides a method for differentiating RPE cells from human pluripotent stem cells, such as human embryonic stem cells and human induced pluripotent stem cells. The method is used to produce large numbers of differentiated RPE cells for use in screening assays, to study the basic biology of the RPE, and as therapeutics. As described herein, RPE cells differentiated from pluripotent stem cells, such as human embryonic stem cells, using this approach are molecularly distinct from human embryonic stem cells, as well as from adult and fetal-derived RPE cells.
The present invention also provides preparations and pharmaceutical preparations of RPE cells derived from human pluripotent stem cells. Such RPE cell preparations are molecularly distinct from human embryonic stem cells, as well as from adult and fetal-derived RPE cells.
The present invention provides, for the first time, a detailed molecular characterization of RPE cells differentiated from human embryonic stem cells. The detailed characterization includes comparisons to RPE cells derived from other sources (e.g., adult RPE cells and fetal RPE cells), as well as to human embryonic stem cells. This analysis not only provides a deeper understanding of RPE cells, but it also revealed that RPE cells differentiated from human embryonic stem cells have distinct molecular properties that distinguish these cells from previously described RPE cells.
The present invention provides preparations of RPE cells, including substantially purified preparations of RPE cells. Exemplary RPE cells are differentiated from human pluripotent stem cells, such as human embryonic stem cells or iPS cells. Human pluripotent stem cell-derived RPE cells can be formulated and used to treat retinal degenerative diseases. Additionally, human pluripotent stem cell-derived RPE cells can be used in screening assays to identify agents that modulate RPE cell survival (in vitro and/or in vivo), to study RPE cell maturation, or to identify agents that modulate RPE cell maturation. Agents identified using such screening assays may be used in vitro or in vivo and may provide additional therapeutics that can be used alone or in combination with RPE cells to treat retinal degenerative diseases.
The present invention provides improved methods for the production of RPE cells from embryonic stem cells or other pluripotent stem cells. The methods of the invention can be used to produce differentiated RPE cells. Optionally, the level of maturation, as assessed by pigmentation levels, of the differentiated RPE cells can be modulated so that differentiated RPE cells, mature RPE cells, or mixtures thereof are produced. Also provided are improved methods for the treatment of eye disorders. In particular, these methods involve the use of RPE cells derived from human embryonic stem cells to treat or ameliorate the symptoms of eye disorders, particularly eye disorders caused or exacerbated, in whole or in part, by damage to or breakdown of the endogenous RPE layer.
In certain aspects, the invention provides a method for producing a culture of retinal pigment epithelial (RPE) cells. In certain embodiments, the culture is a substantially purified culture containing at least 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or greater than 99% differentiated RPE cells (at least 75% of the culture is a differentiated RPE cell, regardless of level of maturity). In certain embodiments, the substantially purified culture contains at least 30%, 35%, 40% or 45% mature differentiated RPE cells. In certain embodiments, the substantially purified culture contains at least 50% mature differentiated RPE cells. In other embodiments, the substantially purified culture contains at least 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or greater than 99% mature differentiated RPE cells. In certain embodiments, the differentiated RPE cells are derived from human embryonic stem cells, human iPS cells, or other pluripotent stem cells.
In certain embodiments, the method comprising the steps of
a) providing human embryonic stem cells;
b) culturing the human embryonic stem cells as embryoid bodies in nutrient rich, low protein medium, which medium optionally contains serum free B-27 supplement;
c) culturing the embryoid bodies as an adherent culture in nutrient rich, low protein medium, which medium optionally contains serum free B-27 supplement;
d) culturing the adherent culture of cells of (c) in nutrient rich, low protein medium, which medium does not contain serum free B-27 supplement;
e) culturing the cells of (d) in medium capable of supporting growth of high-density somatic cell culture, whereby RPE cells appear in the culture of cells.
f) contacting the culture of (e) with an enzyme;
g) selecting the RPE cells from the culture and transferring the RPE cells to a separate culture containing medium supplemented with a growth factor to produce an enriched culture of RPE cells; and
h) propagating the enriched culture of RPE cells to produce a substantially purified culture of RPE cells.
In certain other aspects, the invention provides a method of producing a mature retinal pigment epithelial (RPE) cell, said method comprising the steps of
a) providing human embryonic stem cells;
b) culturing the human embryonic stem cells as embryoid bodies in nutrient rich, low protein medium, which medium optionally contains serum free B-27 supplement;
c) culturing the embryoid bodies as an adherent culture in nutrient rich, low protein medium, which medium optionally contains serum free B-27 supplement;
d) culturing the adherent culture of cells of step (c) in nutrient rich, low protein medium, which medium does not contain serum free B-27 supplement;
e) culturing the cells of (d) in medium capable of supporting growth of high-density somatic cell culture, whereby RPE cells appear in the culture of cells
f) contacting the culture of (e) with an enzyme;
g) selecting the RPE cells from the culture and transferring the RPE cells to a separate culture containing medium supplemented with a growth factor to produce an enriched culture of RPE cells;
h) propagating the enriched culture of RPE cells; and
i) culturing the enriched culture of RPE cells to produce mature RPE cells.
In certain embodiments of any of the foregoing, the substantially purified culture of RPE cells may contain both differentiated RPE cells and mature differentiated RPE cells. Amongst the mature RPE cells, the level of pigment may vary. However, the mature RPE cells can be distinguished visually from the RPE cells based on the increased level of pigmentation and the more columnar shape.
In certain embodiments, the percentage of mature differentiated RPE cells in the culture can be reduced by decreasing the density of the culture. Thus, in certain embodiments, the method further comprises subculturing a population of mature RPE cells to produce a culture containing a smaller percentage of mature RPE cells.
In certain embodiments, the medium used when culturing the cells as embryoid bodies may be selected from any medium appropriate for culturing cells as embryoid bodies. For example, one of skill in the art can select amongst commercially available or proprietary media. Any medium that is capable of supporting high-density cultures may be used, such as medium for viral, bacterial, or eukaryotic cell culture. For example, the medium may be high nutrient, protein-free medium or high nutrient, low protein medium. For example, the human embryonic stem cells may be cultured in MDBK-GM, OptiPro SFM, VP-SFM, EGM-2, or MDBK-MM. In certain embodiments the medium may also contain B-27 supplement.
In certain embodiments, the medium described herein may also be supplemented with one or more growth factors. Growth factors that may be used include, for example, EGF, bFGF, VEGF, and recombinant insulin-like growth factor. The medium may also contain supplements such as heparin, hydrocortisone, ascorbic acid, serum (such as, for example, fetal bovine serum), or a growth matrix (such as, for example, extracellular matrix from bovine corneal epithelium, matrigel (BD biosciences), or gelatin).
In certain embodiments, mechanical or enzymatic methods are used to select RPE cells from amongst clusters of non-RPE cells in a culture of embryoid body, or to facilitate sub-culture of adherent cells. Exemplary mechanical methods include, but are not limited to, tituration with a pipette or cutting with a pulled needle. Exemplary enzymatic methods include, but are not limited to, any enzymes appropriate for disassociating cells (e.g., trypsin, collagenase, dispase). In certain embodiments, a non-enzymatic solution is used to disassociate the cells, such as a high EDTA-containing solution such as, for example, Hanks-based cell disassociation buffer.
In certain embodiments, for any of the above articulated steps, the cells are cultured for between about 3 days and 45 days, such as 7 days, 7-10 days, 7-14 days, or 14-21 days.
In certain embodiments the cells are cultured for about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, or about 46 days. In certain embodiments, the cells are cultured for less than or equal to about: 45, 40, 35, 30, 25, 21, 20, 18, 15, 14, 13, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2, or 1 days. Note that, for each of the above articulated method steps, the cells may be cultured for the same period of time at each step or for differing periods of time at one or more of the steps.
In certain embodiments, the RPE cells are further cultured to produce a culture of mature RPE cells. Both RPE cells and mature RPE cells are differentiated RPE cells. However, mature RPE cells are characterized by increased level of pigment in comparison to differentiated RPE cells. The level of maturity and pigmentation can be modulated by increasing or decreasing the density of the culture of differentiated RPE cells. Thus, a culture of RPE cells can be further cultured to produce mature RPE cells. Alternatively, the density of a culture containing mature RPE cells can be decreased to decrease the percentage of mature differentiated RPE cells and increase the percentage of differentiated RPE cells.
The medium used to culture the RPE cells is any medium appropriate for cell culture, and can be selected by the skilled person. For example, any medium that is capable of supporting high-density cultures may be used, such as medium for viral, bacterial, or animal cell culture. For example, the cells described herein may be cultured in VP-SFM, EGM-2, and MDBK-MM.
In certain embodiments of any of the foregoing, said substantially purified culture of RPE cells (with or without mature RPE cells) are frozen for storage. The cells may be stored by any appropriate method known in the art, e.g., cryogenically frozen and may be frozen at any temperature appropriate for storage of the cells. For example, the cells may be frozen at approximately −20° C., −80° C., −120° C., or at any other temperature appropriate for storage of cells. Cryogenically frozen cells are stored in appropriate containers and prepared for storage to reduce risk of cell damage and maximize the likelihood that the cells will survive thawing. In other embodiments, RPE cells are maintained at room temperature, or refrigerated at, for example, approximately 4° C.
In certain embodiments of any of the foregoing, the method is performed in accordance with Good Manufacturing Practices (GMP). In certain embodiments of any of the foregoing, the human embryonic stem cells from which the RPE cells are differentiated were derived in accordance with Good Manufacturing Practices (GMP). In certain embodiments of any of the foregoing, the human embryonic stem cells from which the RPE cells are differentiated were derived from one or more blastomeres removed from an early stage embryo without destroying the remaining embryo.
In certain embodiments of any of the foregoing, the method is used to produce a preparation comprising at least 1×10⁵RPE cells, at least 5×10⁵RPE cells, at least 1×10⁶RPE cells, at least 5×10⁶RPE cells, at least 1×10⁷RPE cells, at least 2×10⁷RPE cells, at least 3×10⁷RPE cells, at least 4×10⁷RPE cells, at least 5×10⁷RPE cells, at least 6×10⁷RPE cells, at least 7×10⁷RPE cells, at least 8×10⁷RPE cells, at least 9×10⁷RPE cells, at least 1×10⁸RPE cells, at least 2×10⁸RPE cells, at least 5×10⁸RPE cells, at least 7×10 RPE cells, or at least 1×10⁹RPE cells. In certain embodiments, the number of RPE cells in the preparation includes differentiated RPE cells, regardless of level of maturity and regardless of the relative percentages of differentiated RPE cells and mature RPE cells. In other embodiments, the number of RPE cells in the preparation refers to the number of either differentiated RPE cells or mature RPE cells.
In certain embodiments, the method further comprises formulating the differentiated RPE cells and/or differentiated mature RPE cells to produce a preparation of RPE cells suitable for transplantation.
In another aspect, the invention provides a method for treating or preventing a condition characterized by retinal degeneration, comprising administering to a subject in need thereof an effective amount of a preparation comprising RPE cells, which RPE cells are derived from human embryonic stem cells, iPS cells, or other pluripotent stem cells. Conditions characterized by retinal degeneration include, for example, Stargardt's macular dystrophy, age related macular degeneration (dry or wet), diabetic retinopathy, and retinitis pigmentosa. In certain embodiments, the RPE cells are derived from human pluripotent stem cells using one or more of the methods described herein.
In certain embodiments, the preparation was previously cryopreserved and was thawed before transplantation.
In certain embodiments, the method of treating further comprises administration of cyclosporin or one or more other immunosuppressants. When immunosuppressants are used, they may be administered systemically or locally, and they may be administered prior to, concomitantly with, or following administration of the RPE cells. In certain embodiments, immunosuppressive therapy continues for weeks, months, years, or indefinitely following administration of RPE cells.
In certain embodiments, the method of treatment comprises administration of a single dose of RPE cells. In other embodiments, the method of treatment comprises a course of therapy where RPE cells are administered multiple times over some period. Exemplary courses of treatment may comprise weekly, biweekly, monthly, quarterly, biannually, or yearly treatments. Alternatively, treatment may proceed in phases whereby multiple doses are required initially (e.g., daily doses for the first week), and subsequently fewer and less frequent doses are needed. Numerous treatment regimens are contemplated.
In certain embodiments, the administered RPE cells comprise a mixed population of differentiated RPE cells and mature RPE cells. In other embodiments, the administered RPE cells comprise a substantially purified population of either differentiated RPE cells or mature RPE cells. For example, the administered RPE cells may contain less than 25%, 20%, 15%, 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, or less than 1% of the other RPE cell-type.
In certain embodiments, the RPE cells are formulated in a pharmaceutically acceptable carrier or excipient.
In certain embodiments, the preparation comprising RPE cells is transplanted in a suspension, matrix or substrate. In certain embodiments, the preparation is administered by injection into the subretinal space of the eye. In certain embodiments, about 10⁴to about 10⁶cells are administered to the subject. In certain embodiments, the method further comprises the step of monitoring the efficacy of treatment or prevention by measuring electroretinogram responses, optomotor acuity threshold, or luminance threshold in the subject. The method may also comprise monitoring the efficacy of treatment or prevention by monitoring immunogenicity of the cells or migration of the cells in the eye.
In certain aspects, the invention provides a pharmaceutical preparation for treating or preventing a condition characterized by retinal degeneration, comprising an effective amount of RPE cells, which RPE cells are derived from human embryonic stem cells or other pluripotent stem cells. The pharmaceutical preparation may be formulated in a pharmaceutically acceptable carrier according to the route of administration. For example, the preparation may be formulated for administration to the subretinal space of the eye. The composition may comprise at least 10⁴, 10⁵, 5×10⁵, 6×10⁵, 7×10⁵, 8×10⁵, 9×10⁵, 10⁶, 2×10⁶, 3×10⁶, 4×10⁶, 5×10⁶, 6×10⁶, 7×10⁶, 8×10⁶, 9×10⁶, or 10⁷RPE cells. In certain embodiments, the composition may comprise at least 2×10⁷, 5×10⁷, 6×10⁷, 7×10⁷, 8×10⁷, 9×10⁷, 1×10⁸RPE cells. In certain embodiments, the RPE cells may include mature RPE cells, and thus the cell number includes the total of both differentiated RPE cells and mature differentiated RPE cells.
In another aspect, the invention provides a method for screening to identify agents that modulate the survival of RPE cells. For example, RPE cells differentiated from human embryonic stem cells can be used to screen for agents that promote RPE survival. Identified agents can be used, alone or in combination with RPE cells, as part of a treatment regimen. Alternatively, identified agents can be used as part of a culture method to improve the survival of RPE cells differentiated in vitro.
In another aspect, the invention provides a method for screening to identify agents that modulate RPE cell maturity. For example, RPE cells differentiated from human ES cells can be used to screen for agents that promote RPE maturation.
In certain embodiments of any of the foregoing, the method is performed in accordance with Good Manufacturing Practices (GMP). In certain embodiments of any of the foregoing, the human embryonic stem cells or other pluripotent stem cells from which the RPE cells are differentiated were derived in accordance with Good Manufacturing Practices (GMP). In certain embodiments of any of the foregoing, the human embryonic stem cells from which the RPE cells are differentiated were derived from one or more blastomere removed from an early stage embryo without destroying the remaining embryo.
In another aspect, the invention contemplates that, instead of human embryonic stem cells, the starting material for producing RPE cells, or preparations thereof, can be other types of human pluripotent stem cells. By way of example, the invention contemplates that induced pluripotent stem (iPS) cells are used as a starting material for differentiating RPE cells using the methods described herein. Such iPS cells can be obtained from a cell bank, or otherwise previously derived. Alternatively, iPS cells can be newly generated prior to commencing differentiation to RPE cells.
In one embodiment, RPE cells or preparations differentiated from pluripotent stem cells, including iPS cells, are used in a therapeutic method.
The present invention also provides functional human retinal pigmented epithelial cells (hRPEs) that are terminally differentiated from human embryonic stem cells (hESCs) or other human pluripotent stem cells. In non-human, primate transplantation experiments, these hRPEs can be identified apart from other cells by means of their unique physical characteristics, such as by their unique mRNA and protein expression. Moreover, when implanted into a validated animal model of retinal degeneration, hRPEs may treat retinal degeneration in the diseased animal. Accordingly, the hRPEs of the invention are useful for treating patients afflicted by various retinal degenerative disorders. The present invention therefore provides a renewable source of hRPEs that can be produced and manufactured under GLP-like and GMP-compliant conditions for the treatment of visual degenerative diseases and disorders.
In certain embodiments, the present invention provides a human retinal pigmented epithelial cell derived from a human embryonic stem cell, which cell is pigmented and expresses at least one gene that is not expressed in a cell that is not a human retinal pigmented epithelial cell. In certain embodiments, the human retinal pigmented epithelial cell is isolated from at least one protein, molecule, or other impurity that is found in its natural environment.
In another embodiment, the invention provides a cell culture comprising human RPE cells derived from human embryonic stem cells or other pluripotent stem cells, which are pigmented and express at least one gene that is not expressed in a cell that is not a human RPE. When used in this manner, pigmented refers to any level of pigmentation, for example, the pigmentation that initial occurs when RPE cells differentiate from ES cells. Pigmentation may vary with cell density and the maturity of the differentiated RPE cells. However, when cells are referred to as pigmented—the term is understood to refer to any and all levels of pigmentation.
In some embodiments, the cell culture comprises a substantially purified population of human RPE cells. A substantially purified population of hRPE cells is one in which the hRPE cells comprise at least about 75% of the cells in the population. In other embodiments, a substantially purified population of hRPE cells is one in which the hRPE cells comprise at least about 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 97.5%, 98%, 99%, or even greater than 99% of the cells in the population. In some embodiments, the pigmentation of the hRPE cells in the cell culture is homogeneous. In other embodiments, the pigmentation of the hRPE cells in the cell culture is heterogeneous, and the culture of RPE cells comprises both differentiated RPE cells and mature RPE cells. A cell culture of the invention may comprise at least about 10¹, 10², 5×10², 10³, 5×10³, 10⁴, 10⁵, 10⁶, 10⁷, 10⁸, or at least about 10⁹hRPE cells.
The present invention provides human retinal pigmented epithelial cells with varying degrees of pigmentation. In certain embodiments, the pigmentation of a human retinal pigmented epithelial cell is the same as an average human pigmented epithelial cell after terminal differentiation of the hRPE cell. In certain embodiments, the pigmentation of a human retinal pigmented epithelial cell is more pigmented than the average human retinal pigmented epithelial cell after terminal differentiation of the hRPE cell. In certain other embodiments, the pigmentation of a human retinal pigmented epithelial cell is less pigmented than the average human retinal pigmented epithelial cell after terminal differentiation.
In certain embodiments, the present invention provides human RPE cells differentiated from ES cells or other pluripotent stem cells and that express (at the mRNA and/or protein level) one or more (1, 2, 3, 4, 5, or 6) of the following: RPE-65, Bestrophin, PEDF, CRALBP, Otx2, and Mit-F. In certain embodiments, gene expression is measured by mRNA expression. In other embodiments, gene expression is measured by protein expression. In certain embodiments, the RPE cells do not substantially express ES-specific genes, such as Oct-4, alkaline phosphatase, nanog, and/or Rex-1. In other embodiments, the RPE cells express one or more (1, 2, or 3) of pax-2, pax-6, and/or tyrosinase. In certain embodiments, expression of pax-2, pax-6, and/or tyrosinase distinguishes differentiated RPE cells from mature differentiated RPE cells. In other embodiments, the RPE cells express one or more of the markers presented in Table 2, and the expression of the one or more markers is upregulated in RPE cells relative to expression (if any) in human ES cells. In other embodiments, the RPE cells express one or more of the markers presented in Table 3, and the expression of the one or more markers is downregulated in RPE cells relative to expression (if any) in human ES cells.
In certain embodiments, the invention provides a pharmaceutical preparation comprising human RPE cells derived from human embryonic stem cells or other pluripotent stem cells. Pharmaceutical preparations may comprise at least about 10¹, 10², 5×10², 10³, 5×10³, 10⁴, 10⁵, 10⁶, 10⁷, 10⁸or about 10⁹hRPE cells.
In other embodiments, the invention provides a cryopreserved preparation of the RPE cells described herein. The cryopreserved preparation may be frozen for storage for days or years. The cells may be stored by any appropriate method known in the art, e.g., cryogenically frozen and may be frozen at any temperature appropriate for storage of the cells. For example, the cells may be frozen at approximately −20° C., −80° C., −120° C., or at any other temperature appropriate for storage of cells. Cryogenically frozen cells are stored in appropriate containers and prepared for storage to reduce risk of cell damage and maximize the likelihood that the cells will survive thawing. In other embodiments, RPE cells can be maintained at room temperature, or refrigerated at, for example, approximately 4° C. Cryopreserved preparations of the compositions described herein may comprise at least about 10¹, 10², 5×10², 10³, 5×10³, 10⁴, 10⁵, 10⁶, 10⁷, 10⁷or about 10⁹hRPE cells. In certain embodiments, the hRPE cells of the invention are recovered from storage following cryopreservation. In certain embodiments, greater than 65%, 70%, 75,%, or greater than 80% of the RPE cells retain viability following cryopreservation. In other embodiments, greater than 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or greater than 99% of the RPE cells retain viability following cryopreservation.
In another aspect, the invention provides substantially purified preparations of human RPE cells have any combination of the structural, molecular, and functional characteristics described herein. Such preparations may be formulated as pharmaceutical preparations for administration and/or may be formulated for cryopreservation.
In another aspect, the invention provides use of the human RPE cells described herein in the manufacture of a medicament to treat a condition in a patient in need thereof. In another embodiment, the invention provides use of a cell culture comprising the human RPE cells described herein in the manufacture of a medicament to treat a condition in a patient in need thereof. In another embodiment, the invention provides the use of a pharmaceutical preparation comprising the human RPE cells described herein in the manufacture of a medicament to treat a condition in a patient in need thereof. Conditions that may be treated include, without limitation, degenerative diseases of the retina, such as Stargardt's macular dystrophy, retinitis pigmentosa, macular degeneration, glaucoma, and diabetic retinopathy. In certain embodiments, the invention provides methods for treating or preventing a condition characterized by retinal degeneration, comprising administering to a subject in need thereof an effective amount of a preparation comprising RPE cells, which RPE cells are derived from mammalian embryonic stem cells. Conditions characterized by retinal degeneration include, for example, Stargardt's macular dystrophy, age related macular degeneration, diabetic retinopathy, and retinitis pigmentosa.
In other embodiments, the invention provides a solution of human RPE cells derived from a human embryonic stem cell, or other pluripotent stem cell, which RPE cells have any combinations of the features described herein. Such a solutions may comprise at least about 10¹, 10², 5×10², 10³, 5×10³, 10⁴, 10⁵, 10⁶, 10⁷, 10⁸or about 10⁹hRPE cells as described herein. Such solutions are suitable for injection to a subject. Such solutions are suitable for cryopreservation as described herein. This invention also provides a use of these solutions for the manufacture of a medicament to treat a disease that could be treated by the administration of RPE cells, such as, for example, retinal degenerative diseases of the eye.
In another aspect, the RPE cells of the invention are derived from human embryonic stem cells, or other pluripotent stem cells, previously derived under GMP conditions. In one embodiment, the human ES cells are derived from one or more blastomeres of an early cleavage stage embryo, optionally without destroying the embryo. In another embodiment, the human ES cells are from a library of human embryonic stem cells. In certain embodiments said library of human embryonic stem cells comprises stem cells, each of which is hemizygous, homozygous, or nullizygous for at least one MHC allele present in a human population, wherein each member of said library of stem cells is hemizygous, homozygous, or nullizygous for a different set of MHC alleles relative to the remaining members of the library. In further embodiments, the library of human embryonic stein cells comprises stem cells that are hemizygous, homozygous, or nullizygous for all MHC alleles present in a human population. In certain other embodiments, the invention provides a library of RPE cells, each of which is hemizygous, homozygous, or nullizygous for at least one MHC allele present in a human population, wherein each member of said library of RPE cells is hemizygous, homozygous, or nullizygous for a different set of MHC alleles relative to the remaining members of the library. In further embodiments, invention provides a library of human RPE cells that are hemizygous, homozygous, or nullizygous for all MHC alleles present in a human population.
In certain embodiments of any of the foregoing, said substantially purified culture of RPE cells (with or without mature RPE cells) are frozen for storage. The cells may be stored by any appropriate method known in the art, e.g., cryogenically frozen and may be frozen at any temperature appropriate for storage of the cells. For example, the cells may be frozen at approximately −20° C., −80° C., −120° C., or at any other temperature appropriate for storage of cells. Cryogenically frozen cells are stored in appropriate containers and prepared for storage to reduce risk of cell damage and maximize the likelihood that the cells will survive thawing. In other embodiments, RPE cells can be maintained at room temperature, or refrigerated at, for example, approximately 4° C.
In certain embodiments of any of the foregoing, human RPE cells are produced in accordance with Good Manufacturing Practices (GMP). In certain embodiments of any of the foregoing, the human embryonic stem cells from which the RPE cells are differentiated were derived in accordance with Good Manufacturing Practices (GMP). In certain embodiments of any of the foregoing, the human embryonic stem cells from which the RPE cells are differentiated were derived from one or more blastomeres removed from an early stage embryo without destroying the remaining embryo. As such, the invention provides GMP compliant preparations of RPE cells, including substantially purified preparations of RPE cells. Such preparations are substantially free of viral, bacterial, and/or fungal contamination or infection.
In certain embodiments of any of the foregoing, compositions or preparations of RPE cells comprise at least 1×10³RPE cells, at least 5×10⁵RPE cells, at least 1×10⁶RPE cells, at least 5×10⁶RPE cells, at least 1×10⁷RPE cells, at least 2×10⁷RPE cells, at least 3×10⁷RPE cells, at least 4×10⁷RPE cells, at least 5×10⁷RPE cells, at least 6×10⁷RPE cells, at least 7×10⁷RPE cells, at least 8×10⁷RPE cells, at least 9×10⁷RPE cells, at least 1×10⁸RPE cells, at least 2×10⁸RPE cells, at least 5×10⁸RPE cells, at least 7×10⁸RPE cells, or at least 1×10⁹RPE cells. In certain embodiments, the number of RPE cells in the preparation includes differentiated RPE cells, regardless of level of maturity and regardless of the relative percentages of differentiated RPE cells and mature differentiated RPE cells. In other embodiments, the number of RPE cells in the preparation refers to the number of either differentiated RPE cells or mature RPE cells.
In certain embodiments, the method further comprises formulating the differentiated RPE cells and/or differentiated mature RPE cells to produce a preparation of RPE cells suitable for transplantation.
In another aspect, the invention provides a method for treating or preventing a condition characterized by retinal degeneration, comprising administering to a subject in need thereof an effective amount of a preparation comprising RPE cells, which RPE cells are derived from human pluripotent stem cells. In certain embodiments, the RPE cells are derived using any of the methods described herein. Conditions characterized by retinal degeneration include, for example, Stargardt's macular dystrophy, age related macular degeneration (dry or wet), diabetic retinopathy, and retinitis pigmentosa.
In certain embodiments, the preparation was previously cryopreserved and was thawed before transplantation.
In certain embodiments, the method of treating further comprises administration of cyclosporin or one or more other immunosuppressants. When immunosuppressants are used, they may be administered systemically or locally, and they may be administered prior to, concomitantly with, or following administration of the RPE cells. In certain embodiments, immunosuppressive therapy continues for weeks, months, years, or indefinitely following administration of RPE cells.
In certain embodiments, the method of treatment comprises administration of a single dose of RPE cells. In other embodiments, the method of treatment comprises a course of therapy where RPE cells are administered multiple times over some period. Exemplary courses of treatment may comprise weekly, biweekly, monthly, quarterly, biannually, or yearly treatments. Alternatively, treatment may proceed in phases whereby multiple doses are required initially (e.g., daily doses for the first week), and subsequently fewer and less frequent doses are needed. Numerous treatment regimens are contemplated.
In certain embodiments, the administered RPE cells comprise a mixed population of differentiated RPE cells and mature RPE cells. In other embodiments, the administered RPE cells comprise a substantially purified population of either differentiated RPE cells or mature RPE cells. For example, the administered RPE cells may contain less than 25%, 20%, 15%, 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, or less than 1% of the other RPE cell-type.
In certain embodiments, the RPE cells are formulated in a pharmaceutically acceptable carrier or excipient.
In certain embodiments, the preparation comprising RPE cells is transplanted in a suspension, matrix or substrate. In certain embodiments, the preparation is administered by injection into the subretinal space of the eye. In certain embodiments, the preparation is administered transcomeally. In certain embodiments, about 10⁴to about 10⁶cells are administered to the subject. In certain embodiments, the method further comprises the step of monitoring the efficacy of treatment or prevention by measuring electroretinogram responses, optomotor acuity threshold, or luminance threshold in the subject. The method may also comprise monitoring the efficacy of treatment or prevention by monitoring immunogenicity of the cells or migration of the cells in the eye.
In certain aspects, the invention provides a pharmaceutical preparation for treating or preventing a condition characterized by retinal degeneration, comprising an effective amount of RPE cells, which RPE cells are derived from human embryonic stem cells. The pharmaceutical preparation may be formulated in a pharmaceutically acceptable carrier according to the route of administration. For example, the preparation may be formulated for administration to the subretinal space or cornea of the eye. The composition may comprise at least 10⁴, 10⁵, 5×10⁵, 6×10⁵, 7×10⁵, 8×10⁵, 9×10⁵, 10⁶, 2×10⁶, 3×10⁶, 4×10⁶, 5×10⁶, 6×10⁶, 7×10⁶, 8×10⁶, 9×10⁶, or 10⁷RPE cells. In certain embodiments, the composition may comprise at least 2×10⁷, 5×10⁷, 6×10⁷, 7×10⁷, 8×10⁷, 9×10⁷, 1×10⁸RPE cells. In certain embodiments, the RPE cells may include mature RPE cells, and thus the cell number includes the total of both differentiated RPE cells and mature differentiated RPE cells.
In another aspect, the invention provides a method for screening to identify agents that modulate the survival of RPE cells. For example, RPE cells differentiated from human embryonic stem cells can be used to screen for agents that promote RPE survival. Identified agents can be used, alone or in combination with RPE cells, as part of a treatment regimen. Alternatively, identified agents can be used as part of a culture method to improve the survival of RPE cells differentiated in vitro.
In another aspect, the invention provides a method for screening to identify agents that modulate RPE cell maturity. For example, RPE cells differentiated from human ES cells can be used to screen for agents that promote RPE maturation.
In certain embodiments of any of the foregoing, the method is performed in accordance with Good Manufacturing Practices (GMP). In certain embodiments of any of the foregoing, the human embryonic stem cells from which the RPE cells are differentiated were derived in accordance with Good Manufacturing Practices (GMP). In certain embodiments of any of the foregoing, the human embryonic stem cells from which the RPE cells are differentiated were derived from one or more blastomere removed from an early stage embryo without destroying the remaining embryo.
In another aspect, the invention contemplates that, instead of human embryonic stem cells, the starting material for producing RPE cells, or preparations thereof, can be other types of human pluripotent stem cells. By way of example, the invention contemplates that induced pluripotent stem (iPS) cells, which have the characteristic of hES, can similarly be used as a starting material for differentiating RPE cells using the methods described herein. Such iPS cells can be obtained from a cell bank, or otherwise previously derived. Alternatively, iPS cells can be newly generated prior to commencing differentiation to RPE cells.
In one embodiment, RPE cells or preparations differentiated from pluripotent stem cells, including iPS cells, are used in a therapeutic method.
The invention contemplates any combination of the aspects and embodiments described above or below. For example, preparations of RPE cells comprising any combination of differentiated RPE cells and mature RPE cells can be used in the treatment of any of the diseases and conditions described herein. Similarly, methods described herein for producing RPE cells using human embryonic stem cells as a starting material may be similarly performed using any human pluripotent stem cells as a starting material.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 is a schematic model showing the developmental ontogeny of human RPE cells derived from human embryonic stem cells.

FIG. 2 is a graph showing gene expression comparison of hES cells and human embryonic stem cell-derived RPE cells by quantitative, Real-Time, Reverse Transcription PCR (qPCR).

FIG. 3 is a graph showing gene expression comparison of ARPE-19 cells (a previously derived RPE cell line) and human embryonic stem cell-derived RPE cells by quantitative, Real-Time, Reverse Transcription PCR (qPCR).

FIG. 4 is a graph showing gene expression comparison of fetal RPE cells and human embryonic stem cell-derived RPE cells by quantitative, Real-Time, Reverse Transcription PCR (qPCR).

FIG. 5 is a graph showing gene expression comparison of mature RPE cells and hES cells by quantitative, Real-Time, Reverse Transcription PCR (qPCR).

FIG. 6 is a photomicrograph showing Western Blot analysis of hES-specific and RPE-specific markers. Embryonic stem cell-derived RPE cells (lane 1) derived from hES cells (lane 2) did not express the hES-specific proteins Oct-4, Nanog, and Rex-1. However, embryonic stem cell-derived RPE cells express RPE-specific proteins included RPE65, CRALBP, PEDF, Bestrophin, PAX6, and Otx2. Actin was used as protein loading control.

FIG. 7 is a graph showing the principal components analysis plot of microarray gene expressions. Component 1, representing 69% of the variability represents the cell type, whereas Component 2, represents the cell line (i.e., genetic variability). A near-linear scatter of gene expression profiles characterizes the developmental ontogeny of hRPE derived from hES cells.

DETAILED DESCRIPTION OF THE INVENTION

In order that the invention herein described may be fully understood, the following detailed description is set forth. Various embodiments of the invention are described in detail and may be further illustrated by the provided examples.
Unless defined otherwise, all technical and scientific terms used herein have the same meaning as those commonly understood by one of ordinary skill in the art to which this invention belongs. Although methods and materials similar or equivalent to those described herein can be used in the invention or testing of the present invention, suitable methods and materials are described below. The materials, methods and examples are illustrative only, and are not intended to be limiting.
All publications, patents, patent publications and applications and other documents mentioned herein are incorporated by reference in their entirety.
In order to further define the invention, the following terms and definitions are provided herein.
As used in the description herein and throughout the claims that follow, the meaning of “a,” “an,” and “the” includes plural reference unless the context clearly dictates otherwise. Also, as used in the description herein, the meaning of “in” includes “in” and “on” unless the context clearly dictates otherwise.
Throughout this specification, the word “comprise” or variations such as “comprises” or “comprising” will be understood to imply the inclusion of a stated integer or groups of integers but not the exclusion of any other integer or group of integers.
By “embryo” or “embryonic” is meant a developing cell mass that has not implanted into the uterine membrane of a maternal host. An “embryonic cell” is a cell isolated from or contained in an embryo. This also includes blastomeres, obtained as early as the two-cell stage, and aggregated blastomeres.
The term “embryonic stem cells” refers to embryo-derived cells. More specifically it refers to cells isolated from the inner cell mass of blastocysts or morulae and that have been serially passaged as cell lines. The term also includes cells isolated from one or more blastomeres of an embryo, preferably without destroying the remainder of the embryo. The term also includes cells produced by somatic cell nuclear transfer, even when non-embryonic cells are used in the process.
The term “human embryonic stem cells” (hES cells) is used herein as it is used in the art. This term includes cells derived from the inner cell mass of human blastocysts or morulae that have been serially passaged as cell lines. The hES cells may be derived from fertilization of an egg cell with sperm or DNA, nuclear transfer, parthenogenesis, or by means to generate hES cells with homozygosity in the HLA region. Human ES cells are also cells derived from a zygote, blastomeres, or blastocyst-staged mammalian embryo produced by the fusion of a sperm and egg cell, nuclear transfer, parthenogenesis, or the reprogramming of chromatin and subsequent incorporation of the reprogrammed chromatin into a plasma membrane to produce a cell. Human embryonic stem cells of the present invention may include, but are not limited to, MA01, MA09, ACT-4, No. 3, H1, H7, H9, H14 and ACT30 embryonic stem cells. In certain embodiments, human ES cells used to produce RPE cells are derived and maintained in accordance with GMP standards. Human embryonic stem cells, regardless of their source or the particular method use to produce them, can be identified based on (i) the ability to differentiate into cells of all three germ layers, (ii) expression of at least Oct-4 and alkaline phosphatase, and (iii) ability to produce teratomas when transplanted into immunocompromised animals.
The term “human embryo-derived cells” (hEDC) refers to morula-derived cells, blastocyst-derived cells including those of the inner cell mass, embryonic shield, or epiblast, or other totipotent or pluripotent stem cells of the early embryo, including primitive endoderm, ectoderm, and mesoderm and their derivatives, also including blastomeres and cell masses from aggregated single blastomeres or embryos from varying stages of development, but excluding human embryonic stem cells that have been passaged as cell lines.
As used herein, the term “pluripotent stem cells” includes embryonic stem cells, embryo-derived stem cells, and induced pluripotent stem cells, regardless of the method by which the pluripotent stem cells are derived. Pluripotent stem cells are defined functionally as stem cells that: (a) are capable of inducing teratomas when transplanted in immunodeficient (SCID) mice; (b) are capable of differentiating to cell types of all three germ layers (e.g., can differentiate to ectodermal, mesodermal, and endodermal cell types); and (c) express one or more markers of embryonic stem cells (e.g., express Oct 4, alkaline phosphatase, SSEA-3 surface antigen, SSEA-4 surface antigen, nanog, TRA-1-60, TRA-1-81, SOX2, REX1, etc). Exemplary pluripotent stem cells can be generated using, for example, methods known in the art. Exemplary pluripotent stem cells include embryonic stem cells derived from the ICM of blastocyst stage embryos, as well as embryonic stem cells derived from one or more blastomeres of a cleavage stage or morula stage embryo (optionally without destroying the remainder of the embryo). Such embryonic stem cells can be generated from embryonic material produced by fertilization or by asexual means, including somatic cell nuclear transfer (SCNT), parthenogenesis, and androgenesis. Further exemplary pluripotent stem cells include induced pluripotent stem cells (iPS cells) generated by reprogramming a somatic cell by expressing or inducing expression of a combination of factors (herein referred to as reprogramming factors). iPS cells can be generated using fetal, postnatal, newborn, juvenile, or adult somatic cells. In certain embodiments, factors that can be used to reprogram somatic cells to pluripotent stem cells include, for example, a combination of Oct4 (sometimes referred to as Oct 3/4), Sox2, c-Myc, and KIf4. In other embodiments, factors that can be used to reprogram somatic cells to pluripotent stem cells include, for example, a combination of Oct 4, Sox2, Nanog, and Lin28. In other embodiments, somatic cells are reprogrammed by expressing at least 2 reprogramming factors, at least three reprogramming factors, or four reprogramming factors. In other embodiments, additional reprogramming factors are identified and used alone or in combination with one or more known reprogramming factors to reprogram a somatic cell to a pluripotent stem cell.
The terms “RPE cell” and “differentiated RPE cell” and “ES-derived RPE cell” and “human RPE cell” are used interchangeably throughout to refer to an RPE cell differentiated from a human embryonic stem cell using a method of the invention. The term is used generically to refer to differentiated RPE cells, regardless of the level of maturity of the cells, and thus may encompass RPE cells of various levels of maturity. Differentiated RPE cells can be visually recognized by their cobblestone morphology and the initial appearance of pigment. Differentiated RPE cells can also be identified molecularly based on substantial lack of expression of embryonic stem cell markers such as Oct-4 and nanog, as well as based on the expression of RPE markers such as RPE-65, PEDF, CRALBP, and bestrophin. Note that when other RPE-like cells are referred to, they are generally referred to specifically as adult, fetal or APRE19 cells. Thus, unless otherwise specified, RPE cells, as used herein, refers to RPE cells differentiated from human embryonic stem cells.
The terms “mature RPE cell” and “mature differentiated RPE cell” are used interchangeably throughout to refer to changes that occur following initial differentiating of RPE cells. Specifically, although RPE cells can be recognized, in part, based on initial appearance of pigment, after differentiation mature RPE cells can be recognized based on enhanced pigmentation. Pigmentation post-differentiation is not indicative of a change in the RPE state of the cells (e.g., the cells are still differentiated RPE cells). Rather, the changes in pigment post-differentiation correspond to the density at which the RPE cells are cultured and maintained. Thus, mature RPE cells have increased pigmentation that accumulates after initial differentiation. Mature RPE cells are more pigmented than RPE cells—although RPE cells do have some level of pigmentation. Mature RPE cells can be subcultured at a lower density, such that the pigmentation decreases. In this context, mature RPE cells can be cultured to produce RPE cells. Such RPE cells are still differentiated RPE cells that express markers of RPE differentiation. Thus, in contrast to the initial appearance of pigmentation that occurs when RPE cells begin to differentiate, pigmentation changes post-differentiation are phenomenological and do not reflect dedifferentiation of the cells away from an RPE fate. Note that changes in pigmentation post-differentiation also correlate with changes in pax-2 expression. Note that when other RPE-like cells are referred to, they are generally referred to specifically as adult, fetal or APRE19 cells. Thus, unless otherwise specified, RPE cells, as used herein, refers to RPE cells differentiated from human embryonic stem cells.
“APRE-19” refers to cells of a previously derived, human RPE cell line. APRE-19 cells arose spontaneously and are not derived from human embryos or embryonic stein cells.

Overview

This invention provides preparations and compositions comprising human retinal pigmented epithelium (RPE) cells derived from human embryonic stem cells or other human pluripotent stem cells. The RPE cells are pigmented, to at least some extent. The RPE cells do not express (at any appreciable level) the embryonic stem cell markers Oct-4, nanog, or Rex-1. Specifically, expression of these ES genes is approximately 100-1000 fold lower in RPE cells than in ES cells, when assessed by quantitative RT-PCR. The RPE cells do express, both at the mRNA and protein level, one or more of the following: RPE65, CRALBP, PEDF, Bestrophin, MitF and/or Otx2. In certain other embodiments, the RPE cells express, both at the mRNA and protein level, one or more of Pax-2, Pax-6, MitF, and tyrosinase. In certain embodiments of any of the foregoing, the RPE cells are mature RPE cells with increased pigmentation in comparison to differentiated RPE cells.
The invention provides for human RPE cells, cell cultures comprising a substantially purified population of human RPE cells, pharmaceutical preparations comprising human retinal pigmented epithelial cells and cryopreserved preparations of the human RPE cells. In certain embodiments, the invention provides for the use of the human RPE cells in the manufacture of a medicament to treat a condition in a patient in need thereof. Alternatively, the invention provides the use of the cell cultures in the manufacture of a medicament to treat a condition in a patient in need thereof. The invention also provides the use of the pharmaceutical preparations in the manufacture of a medicament to treat a condition in a patient in need thereof. In any of the foregoing, preparations comprising RPE cells may include differentiated RPE cells of varying levels of maturity, or may be substantially pure with respect to differentiated RPE cells of a particular level of maturity. In certain embodiments of any of the foregoing, the preparations comprising RPE cells are prepared in accordance with Good Manufacturing Practices (GMP) (e.g., the preparations are GMP-compliant). In certain embodiments, the preparations comprising RPE cells are substantially free of bacterial, viral, or fungal contamination or infection.
The human RPE cells (embryo-derived or derived from other pluripotent stem cells) can be identified and characterized based on their structural properties. Specifically, and in certain embodiments, these cells are unique in that they can be identified or characterized based on the expression or lack of expression (as assessed at the level of the gene or the level of the protein) of one or more markers. For example, in certain embodiments, differentiated ES-derived RPE cells can be identified or characterized based on expression of one or more (e.g., the cells can be characterized based on expression of at least one, at least two, at least three, at least four, at least five, or at least six) of the following markers: RPE-65, Bestrophin, PEDF, CRALBP, Otx2, and Mit-F. Additionally or alternatively, ES-derived RPE cells can be identified or characterized based on expression of PAX2, tyrosinase, and/or PAX6. Additionally or alternatively, hRPE cells can be identified or characterized based on expression or lack of expression (as assessed at the level of the gene or the level of the protein) of one or more (1, 2, 3, 4, 5, 6, 7, 8, 9, 10, or more than 10) markers analyzed in any of Tables 1-3.
Additionally or alternatively, ES-derived RPE cells can also be identified and characterized based on the degree of pigmentation of the cell. Differentiated hRPE cells that are rapidly dividing are lightly pigmented. However, when cell density reaches maximal capacity, or when hRPE cells are specifically matured, hRPE take on their characteristic phenotypic hexagonal shape and increase pigmentation level by accumulating melanin and lipofuscin. As such, initial accumulation of pigmentation serves as an indicator of RPE differentiation and increased pigmentation associated with cell density serves as an indicator of RPE maturity.
Preparations comprising RPE cells include preparations that are substantially pure, with respect to non-RPE cell types, but which contain a mixture of differentiated RPE cells and mature differentiated RPE cells. Preparations comprising RPE cells also include preparations that are substantially pure both respect to non-RPE cell types and with respect to RPE cells of other levels of maturity.
For any of the foregoing embodiments, the invention contemplates that the RPE cells (characterized as described above) may be derived from human pluripotent stem cells, for example iPS cells and embryonic stem cells. In certain embodiments, the RPE cells are derived from human pluripotent stem cells using any of the methods described herein.

RPE Cell Differentiation

Embryonic stem cells (ES) can be indefinitely maintained in vitro in an undifferentiated state and yet are capable of differentiating into virtually any cell type, providing a limitless supply of rejuvenated and histocompatible cells for transplantation therapy. The problem of immune rejection can be overcome with nuclear transfer and parthenogenetic technology. Thus, human embryonic stem (hES) cells are useful for studies on the differentiation of human cells and can be considered as a potential source for transplantation therapies. To date, the differentiation of human and mouse ES cells into numerous cell types have been reported (reviewed by Smith, 2001) including cardiomyocytes [Kehat et al. 2001, Mummery et al., 2003 Carpenter et al., 2002], neurons and neural precursors (Reubinoff et al. 2000, Carpenter et al. 2001, Schuldiner et al., 2001), adipocytes (Bost et al., 2002, Aubert et al., 1999), hepatocyte-like cells (Rambhatla et al., 2003), hematopoetic cells (Chadwick et al., 2003). oocytes (Hubner et al., 2003), thymocyte-like cells (Lin R Y et al., 2003), pancreatic islet cells (Kahan, 2003), and osteoblasts (Zur Nieden et al., 2003).
The present invention provides for the differentiation of human ES cells into a specialized cell in the neuronal lineage, the retinal pigment epithelium (RPE). RPE is a densely pigmented epithelial monolayer between the choroid and neural retina. It serves as a part of a barrier between the bloodstream and retina. Its functions include phagocytosis of shed rod and cone outer segments, absorption of stray light, vitamin A metabolism, regeneration of retinoids, and tissue repair (Grierson et al., 1994, Fisher and Reh, 2001, Marmorstein et al., 1998). The RPE can be recognized by its cobblestone cellular morphology of black pigmented cells. In addition, there are several known markers of the RPE, including cellular retinaldchyde-binding protein (CRALBP), a cytoplasmic protein that is also found in apical microvilli (Bunt-Milam and Saari, 1983); RPE65, a cytoplasmic protein involved in retinoid metabolism (Ma et al., 2001, Redmond et al., 1998); bestrophin, the product of the Best vitelliform macular dystrophy gene (VMD2, Marmorstein et al., 2000), and pigment epithelium derived factor (PEDF), a 48 kD secreted protein with angiostatic properties (Karakousis et al., 2001, Jablonski et al., 2000).
RPE plays an important role in photoreceptor maintenance, and various RPE malfunctions in vivo are associated with a number of vision-altering ailments, such as RPE detachment, displasia, atrophy, retinopathy, retinitis pigmentosa, macular dystrophy or degeneration, including age-related macular degeneration, which can result in photoreceptor damage and blindness. Because of its wound healing abilities, RPE has been extensively studied in application to transplantation therapy. It has been shown in several animal models and in humans (Gouras et al., 2002, Stanga et al., 2002, Binder et al., 2002, Schraermeyer et al., 2001, reviewed by Lund et al., 2001) that RPE transplantation has a good potential of vision restoration. Recently another prospective niche for RPE transplantation was proposed and even reached the phase of clinical trials: since these cells secrete dopamine, they could be used for treatment of Parkinson disease (Subramanian, 2001). However, even in an immune-privileged eye, there is a problem of graft rejection, hindering the progress of this approach if allogenic transplant is used. The other problem is the reliance on fetal tissue, as adult RPE has a very low proliferative potential. The present invention decreases the likelihood that graft rejection will occur and removes the reliance on the use of fetal tissue.
As a source of immune compatible tissues, hES cells hold a promise for transplantation therapy, as the problem of immune rejection can be overcome with nuclear transfer technology. The use of the new differentiation derivatives of human ES cells, including retinal pigment epithelium-like cells and neuronal precursor cells, and the use of the differentiation system for producing the same offers an attractive potential supply of RPE and neuronal precursor cells for transplantation.
Accordingly, one aspect of the present invention is to provide an improved method of generating RPE cells derived from human embryonic stem cells, which may be purified and/or isolated. Such cells are useful for therapy for retinal degeneration diseases such as, for example, retinitis pigmentosa, macular degeneration and other eye disorders. The cell types that can be produced using this invention include, but are not limited to, RPE cells and RPE progenitor cells. Cells that may also be produced include iris pigmented epithelial (IPE) cells and other vision associated neural cells, such as internuncial neurons (e.g. “relay” neurons of the inner nuclear layer (INL)) and amacrine cells. Additionally, retinal cells, rods, cones, and corneal cells can be produced. In another embodiment of the present invention, cells providing the vasculature of the eye can also be produced.
The human embryonic stem cells are the starting material of this method. The embryonic stem cells may be cultured in any way known in the art, such as in the presence or absence of feeder cells. Additionally, human ES cells produced using any method can be used as the starting material to produce RPE cells. For example, the human ES cells may be derived from blastocyst stage embryos that were the product of in vitro fertilization of egg and sperm. Alternatively, the human ES cells may be derived from one or more blastomeres removed from an early cleavage stage embryo, optionally, without destroying the remainder of the embryo. In still other embodiments, the human ES cells may be produced using nuclear transfer. As a starting material, previously cryopreserved human ES cells can be used.
In the first step of this method for producing RPE cells, human embryonic stem cells are cultured as embryoid bodies. Embryonic stem cells may be pelleted, resuspended in culture medium, and plated on culture dishes (e.g., low attachment culture dishes). Cells may be cultured in any medium that is sufficient for growth of cells at high-density, such as, commercially available medium for viral, bacterial, insect, or animal cell culture. In certain embodiments, nutrient rich, low protein medium is used (e.g., MDBK-GM medium, containing about 150 mg/mL (0.015%) animal-derived protein). When low protein medium is used, the medium contains, for example, less than or equal to about 5%, 4%, 3%, 2.5%, 2%, 1.5%, 1%, 0.75%, 0.5%, 0.25%, 0.2%, 0.1%, 0.05%, 0.02%, 0.016%, 0.015%, or even less than or equal to 0.010% animal-derived protein. Note that reference to the percentage of protein present in low protein medium refers to the medium alone and does not account for protein present in, for example, B-27 supplement. Thus, it is understood that when cells are cultured in low protein medium and B-27 supplement, the percentage of protein present in the medium may be higher.
In certain embodiments, nutrient rich, protein-free medium is used (e.g., MDBK-MM medium). Other examples of culture media include, for example, OptiPro SFM, VP-SFM, and EGM-2. Such media may include nutrient components such as insulin, transferrin, sodium selenite, glutamine, albumin, ethanolamine, fetuin, peptone, purified lipoprotein material, vitamin A, vitamin C, and vitamin E.
In certain embodiments, cell cultures in either low protein or protein free medium are supplemented with serum free B-27 supplement (Brewer et al., Journal of Neuroscience Research 35:567-576 (1993)). Nutrient components of B27 supplement may include biotin, L-carnitine, corticosterone, ethanolamine, D+-galactose, reduced glutathione, lineleic acid, linolenic acid, progesterone, putrescine, retinyl acetate, selenium, triodo-1-thyronine (T3), DL-alpha-tocopherol (vitamin E), DL-alpha-tocopherol acedate, bovine serum albumin, catalase, insulin, superoxide dismutase, and transferrin. When cells are cultured in protein free medium supplemented with B-27, protein free refers to the medium prior to addition of B-27.
The medium may also contain supplements such as heparin, hydrocortisone, ascorbic acid, serum (such as, for example, fetal bovine scrum), or a growth matrix (such as, for example, extracellular matrix from bovine corneal epithelium, matrigel (BD biosciences), or gelatin).
In this method of the present invention, RPE cells differentiate from the embryoid bodies. Isolating RPE cells from the EBs allows for the expansion of the RPE cells in an enriched culture in vitro. For human cells, RPE cells may be obtained form EBs grown for less than 90 days. In certain embodiments of the present invention, RPE cells arise in human EBs grown for 7-14 days. In other embodiments, RPE cells arise in human EBs grown for 14-28 days. In another embodiment, RPE cells are identified and may be isolated from human EBs grown for 28-45 days. In another embodiment, RPE cells arise in human EBs grown for 45-90 days. The medium used to culture embryonic stem cells, embryoid bodies, and RPE cells may be removed and/or replaced with the same or different media at any interval. For example, the medium may be removed and/or replaced after 0-7 days, 7-10 days, 10-14 days, 14-28 days, or 28-90 days. In certain embodiments, the medium is replaced at least daily, every other day, or at least every three days.
In certain embodiments, the RPE cells that differentiate from the EBs are washed and dissociated (e.g., by Trypsin/EDTA, collegenase B, collegenase IV, or dispase). In certain embodiments, a non-enzymatic solution is used to disassociate the cells, such as a high EDTA-containing solution such as, for example, Hanks-based cell disassociation buffer.
RPE cells are selected from the dissociated cells and cultured separately to produce a substantially purified culture of RPE cells. RPE cells are selected based on characteristics associated with RPE cells. For example, RPE cells can be recognized by cobblestone cellular morphology and pigmentation. In addition, there are several known markers of the RPE, including cellular retinaldehyde-binding protein (CRALBP), a cytoplasmic protein that is also found in apical microvilli (Bunt-Milam and Saari, 1983); RPE65, a cytoplasmic protein involved in retinoid metabolism (Ma et al., 2001, Redmond et al., 1998); bestrophin, the product of the Best vitelliform macular dystrophy gene (VMD2, Marmorstein et al., 2000), and pigment epithelium derived factor (PEDF), a 48 kD secreted protein with angiostatic properties (Karakousis et al., 2001, Jablonski et al., 2000). Alternatively, RPE cells can be selected based on cell function, such as by phagocytosis of shed rod and cone outer segments, absorption of stray light, vitamin A metabolism, regeneration of retinoids, and tissue repair (Grierson et al., 1994, Fisher and Reh, 2001, Marmorstein et al., 1998). Evaluation may also be performed using behavioral tests, fluorescent angiography, histology, tight junctions conductivity, or evaluation using electron microscopy. Another embodiment of the present invention is a method of identifying RPE cells by comparing the messenger RNA transcripts of such cells with cells derived in-vivo. In certain embodiments, an aliquot of cells is taken at various intervals during the differentiation of embryonic stem cells to RPE cells and assayed for the expression of any of the markers described above. These characteristic distinguish differentiated RPE cells.
RPE cell culture media may be supplemented with one or more growth factors or agents. Growth factors that may be used include, for example, EGF, FGF, VEGF, and recombinant insulin-like growth factor. Other growth factors that may be used in the present invention include 6Ckine (recombinant), activin A, AlphaA-interferon, alpha-interferon, amphiregulin, angiogenin, B-endothelial cell growth factor, beta cellulin, B-interferon, brain derived neurotrophic factor, C10 (recombinant), cardiotrophin-1, ciliary neurotrophic factor, cytokine-induced neutrophil chemoattractant-1, endothelial cell growth supplement, eotaxin, epidermal growth factor, epithelial neutrophil activating peptide-78, erythropoiten, estrogen receptor-alpha, estrogen receptor-B, fibroblast growth factor (acidic/basic, heparin stabilized, recombinant), FLT-3/FLK-2 ligand (FLT-3 ligand), gamma-interferon, glial cell line-derived neurotrophic factor, Gly-His-Lys, granulocyte colony-stimulating factor, granulocyte macrophage colony-stimulating factor, GRO-alpha/MGSA, GRO-B, GRO-gamma, HCC-1, heparin-binding epidermal growth factor like growth factor, hepatocyte growth factor, heregulin-alpha (EGF domain), insulin growth factor binding protein-1, insulin-like growth factor binding protein-1/IGF-1 complex, insulin-like growth factor, insulin-like growth factor II, 2.5S nerve growth factor (NGF), 7S-NGF, macrophage inflammatory protein-1B, macrophage inflammatory protein-2, macrophage inflammatory protein-3 alpha, macrophage inflammatory protein-3B, monocyte chemotactic protein-1, monocyte chemotactic protein-2, monocyte chemotactic protein-3, neurotrophin-3, neurotrophin-4, NGF-B (human or rat recombinant), oncostatin M (human or mouse recombinant), pituitary extract, placenta growth factor, platelet-derived endothelial cell growth factor, platelet-derived growth factor, pleiotrophin, rantes, stem cell factor, stromal cell-derived factor 1B/pre-B cell growth stimulating factor, thrombopoetin, transforming growth factor alpha, transforming growth factor-B1, transforming growth factor-B2, transforming growth factor-B3, transforming growth-factor-B5, tumor necrosis factor (alpha and B), and vascular endothelial growth factor. Agents that can be used according to the present invention include cytokines such as interferon-alpha A, interferon-alpha A/D, interferon-.beta., interferon-gamma, interferon-gamma-inducible protein-10, interleukin-1, interleukin-2, interleukin-3, interleukin-4, interleukin-5, interleukin-6, interleukin-7, interleukin-8, interleukin-9, interleukin-10, interleukin-1, interleukin-12, interleukin-13, interleukin-15, interleukin-17, keratinocyte growth factor, leptin, leukemia inhibitory factor, macrophage colony-stimulating factor, and macrophage inflammatory protein-1 alpha.
Agents according to the invention also include hormones and hormone antagonists, such as 17B-estradiol, adrenocorticotropic hormone, adrenomedullin, alpha-melanocyte stimulating hormone, chorionic gonadotropin, corticosteroid-binding globulin, corticosterone, dexamethasone, estriol, follicle stimulating hormone, gastrin 1, glucagon, gonadotropin, hydrocortisone, insulin, insulin-like growth factor binding protein, L-3,3′,5′-triiodothyronine, L-3,3′,5-triiodothyronine, leptin, leutinizing hormone, L-thyroxine, melatonin, MZ-4, oxytocin, parathyroid hormone, PEC-60, pituitary growth hormone, progesterone, prolactin, secretin, sex hormone binding globulin, thyroid stimulating hormone, thyrotropin releasing factor, thyroxine-binding globulin, and vasopressin.
In addition, agents according to the invention include extracellular matrix components such as fibronectin, proteolytic fragments of fibronectin, laminin, thrombospondin, aggrecan, and syndezan.
Agents according to the invention also include antibodies to various factors, such as anti-low density lipoprotein receptor antibody, anti-progesterone receptor, internal antibody, anti-alpha interferon receptor chain 2 antibody, anti-c-c chemokine receptor 1 antibody, anti-CD 118 antibody, anti-CD 119 antibody, anti-colony stimulating factor-1 antibody, anti-CSF-1 receptor/c-fins antibody, anti-epidermal growth factor (AB-3) antibody, anti-epidermal growth factor receptor antibody, anti-epidermal growth factor receptor, phospho-specific antibody, anti-epidermal growth factor (AB-1) antibody, anti-erythropoietin receptor antibody, anti-estrogen receptor antibody, anti-estrogen receptor, C-terminal antibody, anti-estrogen receptor-B antibody, anti-fibroblast growth factor receptor antibody, anti-fibroblast growth factor, basic antibody, anti-gamma-interferon receptor chain antibody, anti-gamma-interferon human recombinant antibody, anti-GFR alpha-1 C-terminal antibody, anti-GFR alpha-2 C-terminal antibody, anti-granulocyte colony-stimulating factor (AB-1) antibody, anti-granulocyte colony-stimulating factor receptor antibody, anti-insulin receptor antibody, anti-insulin-like growth factor-1 receptor antibody, anti-interleukin-6 human recombinant antibody, anti-interleukin-1 human recombinant antibody, anti-interleukin-2 human recombinant antibody, anti-leptin mouse recombinant antibody, anti-nerve growth factor receptor antibody, anti-p60, chicken antibody, anti-parathyroid hormone-like protein antibody, anti-platelet-derived growth factor receptor antibody, anti-platelet-derived growth factor receptor-B antibody, anti-platelet-derived growth factor-alpha antibody, anti-progesterone receptor antibody, anti-retinoic acid receptor-alpha antibody, anti-thyroid hormone nuclear receptor antibody, anti-thyroid hormone nuclear receptor-alpha 1/Bi antibody, anti-transferrin receptor/CD71 antibody, anti-transforming growth factor-alpha antibody, anti-transforming growth factor-B3 antibody, anti-tumor necrosis factor-alpha antibody, and anti-vascular endothelial growth factor antibody.
Growth factors, agents, and other supplements described herein may be used alone or in combination with other factors, agents, or supplements. Factors, agents, and supplements may be added to the media immediately or any time after cell culture.
In certain embodiments, the RPE cells are further cultured to produce a culture of mature RPE cells. The medium used to culture the RPE cells can be any medium appropriate for high-density cell culture growth, such as described herein. For example, the cells described herein may be cultured in VP-SFM, EGM-2, and MDBK-MM.
A more detailed description of certain operative combinations of the above described features of the invention is provided below.
In certain embodiments, a previously derived culture of human embryonic stem cells is provided. The hES cells can be, for example, previously derived from a blastocyst (produced by fertilization or nuclear transfer) or from one or more blastomeres from an early cleavage stage embryo (optionally without destroying the remainder of the embryo). The human ES cells are cultured as a suspension culture to produce embryoid bodies (EBs). The embryoid bodies are cultured in suspension for approximately 7-14 days. However, in certain embodiments, the EBs can be cultured in suspension for fewer than 7 days (less than 7, 6, 5, 4, 3, 2, or less than 1 day) or greater than 14 days. The EBs can be cultured in medium optionally supplemented with B-27 supplement.
After culturing the EBs in suspension culture, the EBs can transferred to produce an adherent culture. For example, the EBs can be plated in medium onto gelatin coated plates. When cultured as an adherent culture, the EBs can be cultured in the same type of media as when grown in suspension. In certain embodiments, the media is not supplemented with B-27 supplement when the cells are cultured as an adherent culture. In other embodiments, the medium is supplemented with B-27 initially (e.g., for less than or equal to about 7 days), but then subsequently cultured in the absence of B-27 for the remainder of the period as an adherent culture. The EBs can be cultured as an adherent culture for approximately 14-28. However, in certain embodiments, the EBs can be cultured for fewer than 14 days (less than 14, 13, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2, or less than 1 day) or greater than 28 days.
RPE cells begin to differentiate from amongst cells in the adherent culture of EBs. RPE cells can be visually recognized based on their cobblestone morphology and the initial appearance of pigmentation. As RPE cells continue to differentiate, clusters of RPE cells can be observed.
To enrich for RPE cells and to establish substantially purified cultures of RPE cells, RPE cells are dissociated from each other and from non-RPE cells using mechanical and/or chemical methods. A suspension of RPE cells can then be transferred to fresh medium and a fresh culture vessel to provide an enriched population of RPE cells.
Enriched cultures of RPE cells can be cultured in appropriate medium, for example, EGM-2 medium. This, or a functionally equivalent or similar medium, may be supplemented with one or more growth factors or agents (e.g., bFGF, heparin, hydrocortisone, vascular endothelial growth factor, recombinant insulin-like growth factor, ascorbic acid, human epidermal growth factor).
For embodiments in which the RPE cells are matured, the RPE cells can be further cultured in, for example MDBK-MM medium until the desired level of maturation is obtained. This can be determined by monitoring the increase in pigmentation level during maturation. As an alternative to MDBK-MM medium, a functionally equivalent or similar medium, may be used. Regardless of the particular medium used to mature the RPE cells, the medium may optionally be supplemented with one or more growth factors or agents.
The culture of RPE cells, and thus the preparations of RPE cells prepared from these cultures, can be substantially pure RPE cells containing less than 25%, 20%, 15%, 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, or less than 1% non-RPE cells. In certain embodiments, the substantially purified (with respect to non-RPE cells) cultures contain RPE cells of varying levels of maturity. In other embodiments, the cultures are substantially pure both with respect to non-RPE cells and with respect to RPE cells of differing level of maturity.
For any of the foregoing embodiments, the invention contemplates that the RPE cells (characterized as described above) may be derived from human pluripotent stem cells, for example iPS cells and embryonic stem cells. In certain embodiments, the RPE cells are derived from human pluripotent stem cells using any of the methods described herein.

Preparations of Differentiated Pluripotent Stem Cell-Derived RPE Cells

The present invention provides preparations of human pluripotent stem cell-derived RPE cells. In certain embodiments, the preparation is a preparation of human embryonic stem cell-derived RPE cells. In certain embodiments, the preparation is a preparation of human iPS cell-derived RPE cells. In certain embodiments, the preparations are substantially purified (with respect to non-RPE cells) preparations comprising differentiated ES-derived RPE cells. By substantially purified, with respect to non-RPE cells, is meant that the preparation comprises at least 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or even greater than 99% RPE cells. In other words, the substantially purified preparation of RPE cells contains less than 25%, 20%, 15%, 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, or less than 1% non-RPE cell type. In certain embodiments, the RPE cells in such a substantially purified preparation contain RPE cells of varying levels of maturity/pigmentation. In other embodiments, the RPE cells are substantially pure, both with respect to non-RPE cells and with respect to RPE cells of other levels of maturity. In certain embodiments, the preparations are substantially purified, with respect to non-RPE cells, and enriched for mature RPE cells. By enriched for mature RPE cells, it is meant that at least 30%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or even greater than 99% of the RPE cells are mature RPE cells. In other embodiments, the preparations are substantially purified, with respect to non-RPE cells, and enriched for differentiated RPE cells rather than mature RPE cells. By enriched for, it is meant that at least 30%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or even greater than 99% of the RPE cells are differentiated RPE cells rather than mature RPE cells. In certain embodiments, mature RPE cells are distinguished from RPE cells by one or more of: the level of pigmentation, level of expression of Pax-2, Pax-6, and/or tyrosinase. In certain embodiments, the preparations include at least 1×10³RPE cells, 5×10³RPE cells, 1×10⁴RPE cells, 5×10⁴RPE cells, 1×10⁵RPE cells, 2×10⁵RPE cells, 3×10⁵RPE cells, 4×10⁵RPE cells, 5×10⁵RPE cells, 6×10⁵RPE cells, 7×10⁵RPE cells, 8×10⁵RPE cells, 9×10⁵RPE cells, 1×10⁶RPE cells, 5×10⁶RPE cells, 6×10⁶RPE cells, 7×10⁶RPE cells, 8×10⁶RPE cells, 9×10⁶RPE cells, 1×10⁷RPE cells, 5×10⁷RPE cells, 1×10⁸RPE cells, 1×10⁹RPE cells, or even more than 1×10⁹RPE cells.
In certain embodiments, the ES-derived RPE cells do not express ES cell markers. For example, expression of the ES cell genes Oct-4, nanog, and/or Rex-1 is approximately 100-1000 fold lower in RPE cells than in ES cells, as assessed by quantitative RT-PCR. Thus, in comparison to ES cells, RPE cells are substantially negative for Oct-4, nanog, and/or Rex-1 gene expression.
In certain embodiments, the ES-derived RPE cells express, at the mRNA and protein level, one or more of the following: RPE65, bestrophin, PEDF, CRALBP, Otx2, and MitF. In certain embodiments, RPE cells express two or more, three or more, four or more, five or more, or six of these markers. In certain embodiments, the RPE cells additionally or alternatively express, at the mRNA and protein level, one or more (1, 2, or 3) of the following: pax-2, pax6, and tyrosinase. In other embodiments, the level of maturity of the RPE cells is assessed by expression of one or more (1, 2, or 3) of pax-2, pax6, and tyrosinase.
In certain embodiments, the ES-derived RPE cells express, at the mRNA and/or protein level, one or more (1, 2, 3, 4, 5, 6, 7, 8, or 9) of the RPE-specific genes listed in Table 1 (pax-6, pax-2, RPE65, PEDF, CRALBP, bestrophin, mitF, Otx-2, and tyrosinase, as well as one or more (1, 2, 3, or 4) of the neuroretina genes listed in Table 1 (CHX10, NCAM, nestin, beta-tubulin). However, the RPE cells do not substantially express the ES cell specific genes Oct-4, nanog, and/or Rex-1 (e.g., expression of the ES cell specific genes is 100-1000 fold less in RPE cells, as determined by quantitative RT-PCR).
In certain embodiments, the ES-derived RPE cells express, at the mRNA and/or protein level, one or more (1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, or more than 48) of the genes listed in Table 2, and the expression of the one or more genes is increased in RPE cells relative to the level of expression (if any) in human ES cells. Alternatively or additionally, the ES-derived RPE cells express, at the mRNA and/or protein level one or more (1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, or more than 25) of the genes listed in Table 3, but the expression of the one or more genes is decreased (including decreased to nearly undetectable levels) in RPE cells relative to the level of expression in human ES cells.
In certain embodiments, the substantially purified preparation of RPE cells comprises RPE cells of differing levels of maturity (e.g., differentiated RPE cells and mature differentiated RPE cells). In such instances, there may be variability across the preparation with respect to expression of markers indicative of pigmentation. For example, although such RPE cells may have substantially the same expression of RPE65, PEDF, CRALBP, and bestrophin. The RPE cells may vary, depending on level of maturity, with respect to expression of one or more of pax-2, pax-6, mitF, and/or tyrosinase.
In certain embodiments, the ES-derived RPE cells are stable, terminally differentiated RPE cells that do not de-differentiate to a non-RPE cell type. In certain embodiments, the ES-derived RPE cells are functional RPE cells.
In certain embodiments, the ES-derived RPE cells are characterized by the ability to integrate into the retina upon corneal, sub-retinal, or other transplantation or administration into an animal.
The preparations are produced in compliance with GMP standards. As such, in certain embodiments, the preparations are GMP compliant preparations. In other embodiments, the preparations are substantially free of viral, bacterial, and/or fungal infection and contamination.
In certain embodiments, the preparations are cryopreserved for storage and future use. Thus, the invention provides cryopreserved preparations comprising substantially purified RPE cells. Cryopreserved preparations are formulated in excipients suitable to maintain cell viability during and following cryopreservation. In certain embodiments, the cryopreserved preparation comprises at least 1×10³RPE cells, 5×10³RPE cells, 1×10⁴RPE cells, 5×10⁴RPE cells, 1×10⁵RPE cells, 2×10⁵RPE cells, 3×10⁵RPE cells, 4×10⁵RPE cells, 5×10⁵RPE cells, 6×10⁵RPE cells, 7×10⁵RPE cells, 8×10⁵RPE cells, 9×10⁵RPE cells, 1×10⁶RPE cells, 5×10⁶RPE cells, 6×10⁶RPE cells, 7×10⁶RPE cells, 8×10⁶RPE cells, 9×10⁶RPE cells, 1×10⁷RPE cells, 5×10⁷RPE cells, 1×10⁸RPE cells, 1×10⁹RPE cells, or even more than 1×10⁹RPE cells. Cryopreserved preparations may have the same levels of purity with respect to non-RPE cells and/or with respect to RPE cells of varying levels of maturity as detailed above. In certain embodiments, at least 65% of the RPE cells in a cryopreserved preparation of RPE cells retain viability following thawing. In other embodiments, at least 70%, 75%, 80%, 85%, 90%, 81%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or greater than 99% of the RPE cells in a cryopreserved preparation of RPE cells retain viability following thawing.
The RPE cells provided herein are human cells. Note, however, that the human cells may be used in human patients, as well as in animal models or animal patients. For example, the human cells may be tested in rat, dog, or non-human primate models of retinal degeneration. Additionally, the human cells may be used therapeutically to treat animals in need thereof, such as in a veterinary medical setting.
Preparations may be formulated as pharmaceutical preparations prepared in a pharmaceutically acceptable carrier or excipient. Preferred preparations are specifically formulated for administration to the eye (e.g., sub-retinal, corneal, ocular, etc.)
In certain embodiments of any of the foregoing, the RPE cells are derived from human pluripotent stem cells, such as human embryonic stem cells or human iPS cells. The invention contemplates that any of the preparations described herein may be derived from an appropriate human pluripotent stem cell.
Preparations including one or more of any of the foregoing features are contemplated.
The invention contemplates that any of the foregoing preparations of RPE cells, including substantially purified preparations and preparations have a particular minimal number of RPE cells, may be used in the treatment of any of the indications described herein. Further, RPE cells differentiated using any of the methods described herein may be used in the treatment of any of the indications described herein.

RPE Cell-Based Therapies

RPE cells and pharmaceutically preparations comprising RPE cells produced by the methods described herein and/or having the characteristics of RPE cell preparations described herein may be used for cell-based treatments in which RPE cells are needed or would improve treatment. The following section describes methods of using RPE cells provided by the present invention for treating various conditions that may benefit from RPE cell-based therapies. The particular treatment regimen, route of administration, and any adjuvant therapy will be tailored based on the particular condition, the severity of the condition, and the patient's overall health. Additionally, in certain embodiments, administration of RPE cells may be effective to fully restore any vision loss or other symptoms. In other embodiments, administration of RPE cells may be effective to reduce the severity of the symptoms and/or to prevent further degeneration in the patient's condition. The invention contemplates that administration of a preparation comprising RPE cells can be used to treat (including reducing the severity of the symptoms, in whole or in part) any of the foregoing or following conditions. Additionally, RPE cell administration may be used to help treat the symptoms of any injury to the endogenous RPE layer.
The invention contemplates that RPE cells, including preparations comprising RPE cells, derived using any of the methods described herein can be used in the treatment of any of the indications described herein. Further, the invention contemplates that any of the preparations comprising RPE cells described herein can be used in the treatment of any of the indications described herein.
Retinitis pigmentosa is a hereditary condition in which the vision receptors are gradually destroyed through abnormal genetic programming. Some forms cause total blindness at relatively young ages, where other forms demonstrate characteristic “bone spicule” retinal changes with little vision destruction. This disease affects some 1.5 million people worldwide. Two gene defects that cause autosomal recessive retinitis pigmentosa have been found in genes expressed exclusively in RPE. One is due to an RPE protein involved in vitamin A metabolism (cis retinaldehyde binding protein). The second involves another protein unique to RPE, RPE65. This invention provides methods and compositions for treating both of these forms of retinitis pigmentosa by administration of RPE cells.
In another embodiment, the present invention provides methods and compositions for treating disorders associated with retinal degeneration, including macular degeneration.
A further aspect of the present invention is the use of RPE cells for the therapy of eye diseases, including hereditary and acquired eye diseases. Examples of acquired or hereditary eye diseases are age-related macular degeneration, glaucoma and diabetic retinopathy.
Age-related macular degeneration (AMD) is the most common reason for legal blindness in western countries. Atrophy of the submacular retinal pigment epithelium and the development of choroidal neovascularizations (CNV) results secondarily in loss of central visual acuity. For the majority of patients with subfoveal CNV and geographic atrophy there. is at present no treatment available to prevent loss of central visual acuity. Early signs of AMD are deposits (druses) between retinal pigment epithelium and Bruch's membrane. During the disease there is sprouting of choroid vessels into the subretinal space of the macula. This leads to loss of central vision and reading ability.
Glaucoma is the name given to a group of diseases in which the pressure in the eye increases abnormally. This leads to restrictions of the visual field and to the general diminution in the ability to see. The most common form is primary glaucoma; two forms of this are distinguished: chronic obtuse-angle glaucoma and acute angle closure. Secondary glaucoma may be caused by infections, tumors or injuries. A third type, hereditary glaucoma, is usually derived from developmental disturbances during pregnancy. The aqueous humor in the eyeball is under a certain pressure which is necessary for the optical properties of the eye. This intraocular pressure is normally 15 to 20 millimeters of mercury and is controlled by the equilibrium between aqueous production and aqueous outflow. In glaucoma, the outflow of the aqueous humor in the angle of the anterior chamber is blocked so that the pressure inside the eye rises. Glaucoma usually develops in middle or advanced age, but hereditary forms and diseases are not uncommon in children and adolescents. Although the intraocular pressure is only slightly raised and there are moreover no evident symptoms, gradual damage occurs, especially restriction of the visual field. Acute angle closure by contrast causes pain, redness, dilation of the pupils and severe disturbances of vision. The cornea becomes cloudy, and the intraocular pressure is greatly increased. As the disease progresses, the visual field becomes increasingly narrower, which can easily be detected using a perimeter, an ophthalmologic instrument. Chronic glaucoma generally responds well to locally administered medicaments which enhance aqueous outflow. Systemic active substances are sometimes given to reduce aqueous production. However, medicinal treatment is not always successful. If medicinal therapy fails, laser therapy or conventional operations are used in order to create a new outflow for the aqueous humor. Acute glaucoma is a medical emergency. If the intraocular pressure is not reduced within 24 hours, permanent damage occurs.
Diabetic retinopathy arises in cases of diabetes mellitus. It can lead to thickening of the basal membrane of the vascular endothelial cells as a result of glycosilation of proteins. It is the cause of early vascular sclerosis and the formation of capillary aneurysms. These vascular changes lead over the course of years to diabetic retinopathy. The vascular changes cause hypoperfusion of capillary regions. This leads to lipid deposits (hard exudates) and to vasoproliferation. The clinical course is variable in patients with diabetes mellitus. In age-related diabetes (type II diabetes), capillary aneurysms appear first. Thereafter, because of the impaired capillary perfusion, hard and soft exudates and dot-like hemorrhages in the retinal parenchyma appear. In later stages of diabetic retinopathy, the fatty deposits are arranged like a corona around the macula (retinitis circinata). These changes are frequently accompanied by edema at the posterior pole of the eye. If the edema involves the macula there is an acute serious deterioration in vision. The main problem in type I diabetes is the vascular proliferation in the region of the fundus of the eye. The standard therapy is laser coagulation of the affected regions of the fundus of the eye. The laser coagulation is initially performed focally in the affected areas of the retina. If the exudates persist, the area of laser coagulation is extended. The center of the retina with the site of sharpest vision, that is to say the macula and the papillomacular bundle, cannot be coagulated because the procedure would result in destruction of the parts of the retina which are most important for vision. If proliferation has already occurred, it is often necessary for the foci to be very densely pressed on the basis of the proliferation. This entails destruction of areas of the retina. The result is a corresponding loss of visual field. In type I diabetes, laser coagulation in good time is often the only chance of saving patients from blindness.
In certain embodiments, the RPE cells of the invention may be used to treat disorders of the central nervous system. RPE cells may be transplanted into the CNS. To date, a number of different cell types have been employed in animal experiments or in patients with Parkinson's disease in clinical studies. Examples are fetal cells obtained from brains of human fetuses. Fetal cells from the ventral midbrain or dopaminergic neurons have already been transplanted in clinical studies on more than 300 patients with Parkinson's disease (for review, see Alexi T, Borlongan C V, Faull R L, Williams C E, Clark R G, Gluckman P D, Hughes P E (2000) (Neuroprotective strategies for basal ganglia degeneration: Parkinson's and Huntington's diseases. Prog Neurobiol 60: 409 470). A number of different cell types, including non-neuronal cells, e.g. cells from the adrenal cortex, Sertoli cells on the gonads or glomus cells from the carotid bodies, fibroblasts or astrocytes, have been used in patients with Parkinson's disease or in animal models with the aim of replacing dopamine spontaneously or after gene transfer (Alexi et al. 2000, supra). The survival rate of transplanted fetal dopaminergic neurons is S 8%, which was enough to cause a slight improvement in the signs and symptoms (Alexi ct al. 2000, supra).
In recent years, neuronal stem cells from brains of adult vertebrates have been isolated, expanded in vitro and reimplanted into the CNS, after which they differentiated into pure neurons. Their function in the CNS remains uncertain, however. Neuronal precursor cells have also been used for gene transfer (Raymon H K, Thode S, Zhou J, Friedman G C, Pardinas J R, Barrere C, Johnson R M, Sah D W (1999) Immortalized human dorsal root ganglion cells differentiate into neurons with nociceptive properties. J Neurosci 19: 5420 5428). Schwann cells which overexpressed NGF and GDNF had neuroprotective effects in models of Parkinsonism (Wilby M J, Sinclair S R, Muir E M, Zietlow R, Adcock K H, Horellou P, Rogers J H, Dunnett S B, Fawcett J W (1999) A glial cell line-derived neurotrophic factor-secreting clone of the Schwann cell line SCTM41 enhances survival and fiber outgrowth from embryonic nigral neurons grafted to the striatum and to the lesioned Substantia nigra. J Neurosci 19: 2301 2312).
Another aspect of the present invention is therefore the use of pigment epithelial cells for the therapy of nerve diseases, in particular a disease of the nervous system, preferably of the CNS, especially of Parkinson's disease.
An example of a common disease of the CNS is Parkinson's disease which is a chronic degenerative disease of the brain. The disease is caused by degeneration of specialized neuronal cells in the region of the basal ganglia. The death of dopaminergic neurons results in reduced synthesis of dopamine, an important neurotransmitter, in patients with Parkinson's disease. The standard therapy is medical therapy with L-dopa. L-Dopa is metabolized in the basal ganglia to dopamine and there takes over the function of the missing endogenous neurotransmitter. However, L-dopa therapy loses its activity after some years.
Animal models of retinitis pigmentosa that may be treated or used to test the efficacy of the RPE cells produced using the methods described herein include rodents (rd mouse, RPE-65 knockout mouse, tubby-like mouse, RCS rat), cats (Abyssinian cat), and dogs (cone degeneration “cd” dog, progressive rod-cone degeneration “pred” dog, early retinal degeneration “erd” dog, rod- cone dysplasia 1, 2 & 3 “rcd1, rcd2 & rcd3” dogs, photoreceptor dysplasia “pd” dog, and Briard “RPE-65” (dog)).
Another embodiment of the present invention is a method for the derivation of RPE lines or precursors to RPE cells that have an increased ability to prevent neovascularization. Such cells can be produced by aging a somatic cell from a patient such that telomerase is shortened where at least 10% of the normal replicative lifespan of the cell has been passed, then the use of said somatic cell as a nuclear transfer donor cell to create cells that overexpress angiogenesis inhibitors such as Pigment Epithelium Derived Factor (PEDF/EPC-1). Alternatively such cells may be genetically modified with exogenous genes that inhibit neovascularization.
The invention contemplates that preparations of RPE cells differentiated from human pluripotent stem cells (e.g., human embryonic stem cells, iPS cells, or other pluripotent stem cells) can be used to treat any of the foregoing diseases or conditions, as well as injuries of the endogenous RPE layer. These diseases can be treated with preparations of RPE cells comprising a mixture of differentiated RPE cells of varying levels of maturity, as well as with preparations of differentiated RPE cells that are enriched for mature differentiated RPE cells or differentiated RPE cells.

Modes of Administration

RPE cells of the invention may be administered topically, systemically, or locally, such as by injection (e.g., intravitreal injection), or as part of a device or implant (e.g., a sustained release implant). For example, the cells of the present invention may be transplanted into the subretinal space by using vitrectomy surgery.
Depending on the method of administration, RPE cells can be added to buffered and electrolyte balanced aqueous solutions, buffered and electrolyte balanced aqueous solutions with a lubricating polymer, mineral oil or petrolatum-based ointment, other oils, liposomes, cylcodextrins, sustained release polymers or gels. These preparations can be administered topically to the eye 1 to 6 times per day for a period up to the lifetime of the patient.
In certain embodiments, methods of treating a patient suffering from a condition associated with retinal degeneration comprise administering a composition of the invention locally (e.g., by intraocular injection or insertion of a sustained release device that releases a composition of the invention), by topical means or by systemic administration (e.g., by routes of administration that allow in vivo systemic absorption or accumulation of drugs in the blood stream followed by distribution throughout the entire body, including, without limitation, by intravenous, subcutaneous, intraperitoneal, inhalation, oral, intrapulmonary and intramuscular routes). Intraocular administration of compositions of the invention includes, for example, delivery into the vitreous body, transcorneally, sub-conjunctival, juxtascleral, posterior scleral, and sub-tenon portions of the eye. See, for example, U.S. Pat. Nos. 6,943,145; 6,943,153; and 6,945,971, the contents of which are hereby incorporated by reference.
RPE cells of the invention may be delivered in a pharmaceutically acceptable ophthalmic formulation by intraocular injection. When administering the formulation by intravitreal injection, for example, the solution should be concentrated so that minimized volumes may be delivered. Concentrations for injections may be at any amount that is effective and non-toxic, depending upon the factors described herein. In some embodiments, RPE cells for treatment of a patient are formulated at doses of about 10⁴cells/mL. In other embodiments, RPE cells for treatment of a patient are formulated at doses of about 10⁵, 10⁶, 10⁷, 10⁸, 10⁹, or 10¹⁰cells/mL.
RPE cells may be formulated for delivery in a pharmaceutically acceptable ophthalmic vehicle, such that the composition is maintained in contact with the ocular surface for a sufficient time period to allow the cells to penetrate the affected regions of the eye, as for example, the anterior chamber, posterior chamber, vitreous body, aqueous humor, vitreous humor, cornea, iris/ciliary, lens, choroid, retina, sclera, suprachoridal space, conjunctiva, subconjunctival space, episcleral space, intracorneal space, epicomeal space, pars plana, surgically-induced avascular regions, or the macula. Products and systems, such as delivery vehicles, comprising the agents of the invention, especially those formulated as pharmaceutical compositions—as well as kits comprising such delivery vehicles and/or systems—are also envisioned as being part of the present invention.
In certain embodiments, a therapeutic method of the invention includes the step of administering RPE cells of the invention as an implant or device. In certain embodiments, the device is bioerodible implant for treating a medical condition of the eye comprising an active agent dispersed within a biodegradable polymer matrix, wherein at least about 75% of the particles of the active agent have a diameter of less than about 10 μm. The bioerodible implant is sized for implantation in an ocular region. The ocular region can be any one or more of the anterior chamber, the posterior chamber, the vitreous cavity, the choroid, the suprachoroidal space, the conjunctiva, the subconjunctival space, the episcleral space, the intracorneal space, the epicorneal space, the sclera, the pars plana, surgically-induced avascular regions, the macula, and the retina. The biodegradable polymer can be, for example, a poly(lactic-co-glycolic)acid (PLGA) copolymer. In certain embodiments, the ratio of lactic to glycolic acid monomers in the polymer is about 25/75, 40/60, 50/50, 60/40, 75/25 weight percentage, more preferably about 50/50. Additionally, the PLGA copolymer can be about 20, 30, 40, 50, 60, 70, 80 to about 90 percent by weight of the bioerodible implant. In certain preferred embodiments, the PLGA copolymer can be from about 30 to about 50 percent by weight, preferably about 40 percent by weight of the bioerodible implant.
The volume of composition administered according to the methods described herein is also dependent on factors such as the mode of administration, number of RPE cells, age and weight of the patient, and type and severity of the disease being treated. For example, if administered orally as a liquid, the liquid volume comprising a composition of the invention may be from about 0.5 milliliters to about 2.0 milliliters, from about 2.0 milliliters to about 5.0 milliliters, from about 5.0 milliliters to about 10.0 milliliters, or from about 10.0 milliliters to about 50.0 milliliters. If administered by injection, the liquid volume comprising a composition of the invention may be from about 5.0 microliters to about 50 microliters, from about 50 microliters to about 250 microliters, from about 250 microliters to about 1 milliliter, from about 1 milliliter to about 5 milliliters, from about 5 milliliters to about 25 milliliters, from about 25 milliliters to about 100 milliliters, or from about 100 milliliters to about 1 liter.
If administered by intraocular injection, RPE cells can be delivered one or more times periodically throughout the life of a patient. For example RPE cells can be delivered once per year, once every 6-12 months, once every 3-6 months, once every 1-3 months, or once every 1-4 weeks. Alternatively, more frequent administration may be desirable for certain conditions or disorders. If administered by an implant or device, RPE cells can be administered one time, or one or more times periodically throughout the lifetime of the patient, as necessary for the particular patient and disorder or condition being treated. Similarly contemplated is a therapeutic regimen that changes over time. For example, more frequent treatment may be needed at the outset (e.g., daily or weekly treatment). Over time, as the patient's condition improves, less frequent treatment or even no further treatment may be needed.
In certain embodiments, patients are also administered immunosuppressive therapy, either before, concurrently with, or after administration of the RPE cells.
Immunosuppressive therapy may be necessary throughout the life of the patient, or for a shorter period of time.
In certain embodiments, RPE cells of the present invention are formulated with a pharmaceutically acceptable carrier. For example, RPE cells may be administered alone or as a component of a pharmaceutical formulation. The subject compounds may be formulated for administration in any convenient way for use in human medicine. In certain embodiments, pharmaceutical compositions suitable for parenteral administration may comprise the RPE cells, in combination with one or more pharmaceutically acceptable sterile isotonic aqueous or nonaqueous solutions, dispersions, suspensions or emulsions, or sterile powders which may be reconstituted into sterile injectable solutions or dispersions just prior to use, which may contain antioxidants, buffers, bacteriostats, solutes which render the formulation isotonic with the blood of the intended recipient or suspending or thickening agents. Examples of suitable aqueous and nonaqueous carriers which may be employed in the pharmaceutical compositions of the invention include water, ethanol, polyols (such as glycerol, propylene glycol, polyethylene glycol, and the like), and suitable mixtures thereof, vegetable oils, such as olive oil, and injectable organic esters, such as ethyl oleate. Proper fluidity can be maintained, for example, by the use of coating materials, such as lecithin, by the maintenance of the required particle size in the case of dispersions, and by the use of surfactants.
The compositions of the invention may also contain adjuvants, such as preservatives, wetting agents, emulsifying agents and dispersing agents. Prevention of the action of microorganisms may be ensured by the inclusion of various antibacterial and antifungal agents, for example, paraben, chlorobutanol, phenol sorbic acid, and the like. It may also be desirable to include isotonic agents, such as sugars, sodium chloride, and the like in the compositions. In addition, prolonged absorption of the injectable pharmaceutical form may be brought about by the inclusion of one or more agents that delay absorption, such as, e.g., aluminum monostearate and gelatin.
When administered, the therapeutic composition for use in this invention is, of course, in a pyrogen-free, physiologically acceptable form. Further, the composition may desirably be encapsulated or injected in a viscous form into the vitreous humor for delivery to the site of retinal or choroidal damage.

Engineering MHC Genes in Human Embryonic Stem Cells to Obtain Reduced-Complexity RPE Cells

The human embryonic stem cells used as the starting point for the method of producing RPE cells of this invention may also be derived from a library of human embryonic stem cells, each of which is hemizygous or homozygous for at least one MHC allele present in a human population. In certain embodiments, each member of said library of stem cells is hemizygous or homozygous for a different set of MHC alleles relative to the remaining members of the library. In certain embodiments, the library of stem cells is hemizygous or homozygous for all MHC alleles that are present in a human population. In the context of this invention, stem cells that are homozygous for one or more histocompatibility antigen genes include cells that are nullizygous for one or more (and in some embodiments, all) such genes. Nullizygous for a genetic locus means that the gene is null at that locus, i.e., both alleles of that gene are deleted or inactivated. Stem cells that are nullizygous for all MHC genes may be produced by standard methods known in the art, such as, for example, gene targeting and/or loss of heterozygosity (LOH). See, for example, United States patent publications US 20040091936, US 20030217374 and US 20030232430, and U.S. provisional application No. 60/729,173, the disclosures of all of which are hereby incorporated by reference herein.
Accordingly, the present invention relates to methods of obtaining RPE cells, including a library of RPE cells, with reduced MHC complexity. RPE cells with reduced MHC complexity will increase the supply of available cells for therapeutic applications as it will eliminate the difficulties associated with patient matching. Such cells may be derived from stem cells that are engineered to be hemizygous or homozygous for genes of the MHC complex.
A human ES cell may comprise modifications to one of the alleles of sister chromosomes in the cell's MHC complex. A variety of methods for generating gene modifications, such as gene targeting, may be used to modify the genes in the MHC complex. Further, the modified alleles of the MHC complex in the cells may be subsequently engineered to be homozygous so that identical alleles are present on sister chromosomes. Methods such as loss of heterozygosity (LOH) may be utilized to engineer cells to have homozygous alleles in the MHC complex. For example, one or more genes in a set of MHC genes from a parental allele can be targeted to generate hemizygous cells. The other set of MHC genes can be removed by gene targeting or LOH to make a null line. This null line can be used further as the embryonic cell line in which to drop arrays of the HLA genes, or individual genes, to make a hemizygous or homozygous bank with an otherwise uniform genetic background.
In one aspect, a library of ES cell lines, wherein each member of the library is homozygous for at least one HLA gene, is used to derive RPE cells according to the methods of the present invention. In another aspect, the invention provides a library of RPE cells (and/or RPE lineage cells), wherein several lines of ES cells are selected and differentiated into RPE cells. These RPE cells and/or RPE lineage cells may be used for a patient in need of a cell-based therapy.
Accordingly, certain embodiments of this invention pertain to a method of administering human RPE cells that have been derived from reduced-complexity embryonic stem cells to a patient in need thereof. In certain embodiments, this method comprises the steps of: (a) identifying a patient that needs treatment involving administering human RPE cells to him or her; (b) identifying MHC proteins expressed on the surface of the patient's cells; (c) providing a library of human RPE cells of reduced MHC complexity made by the method for producing RPE cells of the present invention; (d) selecting the RPE cells from the library that match this patient's MHC proteins on his or her cells; (e) administering any of the cells from step (d) to said patient. This method may be performed in a regional center, such as, for example, a hospital, a clinic, a physician's office, and other health care facilities. Further, the RPE cells selected as a match for the patient, if stored in small cell numbers, may be expanded prior to patient treatment.

Other Commercial Applications and Methods

Certain aspects of the present invention pertain to the production of RPE cells to reach commercial quantities. In particular embodiments, RPE cells are produced on a large scale, stored if necessary, and supplied to hospitals, clinicians or other healthcare facilities. Once a patient presents with an indication such as, for example, Stargardt's macular dystrophy, age related macular degeneration, or retinitis pigmentosa, RPE cells can be ordered and provided in a timely manner. Accordingly, the present invention relates to methods of producing RPE cells to attain cells on a commercial scale, cell preparations comprising RPE cells derived from said methods, as well as methods of providing (i.e., producing, optionally storing, and selling) RPE cells to hospitals and clinicians.
Accordingly certain aspects of the present invention relate to methods of production, storage, and distribution of RPE cells produced by the methods disclosed herein. Following RPE production, RPE cells may be harvested, purified and optionally stored prior to a patient's treatment. RPE cells may optionally be patient specific or specifically selected based on HLA or other immunologic profile.
Thus in particular embodiments, the present invention provides methods of supplying RPE cells to hospitals, healthcare centers, and clinicians, whereby RPE cells produced by the methods disclosed herein are stored, ordered on demand by a hospital, healthcare center, or clinician, and administered to a patient in need of RPE cell therapy. In alternative embodiments, a hospital, healthcare center, or clinician orders RPE cells based on patient specific data, RPE cells are produced according to the patient's specifications and subsequently supplied to the hospital or clinician placing the order.
In certain embodiments, the method of differentiating RPE cells from human embryonic stem cells is conducted in accordance with Good Manufacturing Practices (GMP). In certain embodiments, the initial derivation or production of human embryonic stem cells is also conducted in accordance with Good Manufacturing Practices (GMP). The cells may be tested at one or more points throughout the differentiation protocol to ensure, for example, that there is no viral, bacterial, or fungal infection or contamination in the cells or culture medium. Similarly, the human embryonic stem cells used as starting material may be tested to ensure that there is no viral, bacterial, or fungal infection or contamination.
In certain embodiments, the production of differentiated RPE cells or mature differentiated RPE cells is scaled up for commercial use. For example, the method can be used to produce at least 1×10⁵, 5×10⁵, 1×10⁶, 5×10⁶, 1×10⁷, 5×10⁷, 1×10⁸, 5×10⁸, 1×10⁹, 5×10⁹, or 1×10¹⁰RPE cells.
Further aspects of the invention relate to a library of RPE cells that can provide matched cells to potential patient recipients. Accordingly, in one embodiment, the invention provides a method of conducting a pharmaceutical business, comprising the step of providing RPE cell preparations that are homozygous for at least one histocompatibility antigen, wherein cells are chosen from a bank of such cells comprising a library of RPE cells that can be expanded by the methods disclosed herein, wherein each RPE cell preparation is hemizygous or homozygous for at least one MHC allele present in the human population, and wherein said bank of RPE cells comprises cells that are each hemizygous or homozygous for a different set of MHC alleles relative to the other members in the bank of cells. As mentioned above, gene targeting or loss of heterozygosity may be used to generate the hemizygous or homozygous MHC allele stem cells used to derive the RPE cells. In one embodiment, after a particular RPE cell preparation is chosen to be suitable for a patient, it is thereafter expanded to reach appropriate quantities for patient treatment. Methods of conducting a pharmaceutical business may also comprise establishing a distribution system for distributing the preparation for sale or may include establishing a sales group for marketing the pharmaceutical preparation.
Other aspects of the invention relate to the use of the RPE cells of the present invention as a research tool in settings such as a pharmaceutical, chemical, or biotechnology company, a hospital, or an academic or research institution. Such uses include the use of RPE cells differentiated from embryonic stem cells in screening assays to identify, for example, agents that can be used to promote RPE survival in vitro or in vivo, or that can be used to promote RPE maturation. Identified agents can be studied in vitro or in animal models to evaluate, for example, their potential use alone or in combination with RPE cells.
The present invention also includes methods of obtaining human ES cells from a patient and then generating and expanding RPE cells derived from the ES cells. These RPE cells may be stored. In addition, these RPE cells may be used to treat the patient from which the ES were obtained or a relative of that patient.
As the methods and applications described above relate to treatments, pharmaceutical preparations, and the storing of RPE cells, the present invention also relates to solutions of RPE cells that are suitable for such applications. The present invention accordingly relates to solutions of RPE cells that are suitable for injection into a patient. Such solutions may comprise cells formulated in a physiologically acceptable liquid (e.g., normal saline, buffered saline, or a balanced salt solution). The number of cells in the solution may be at least about 10²and less than about 10⁹cells. In other embodiments, the number of cells in the solution may range from about 10¹, 10², 5×10², 10³, 5×10³, 10⁴, 10⁵, 10⁶, 10⁷, or 10⁸to about 5×10², 10³, 5×10³, 10⁴, 10⁵, 10⁶, 10⁷, 10⁸, or 10⁹, where the upper and lower limits are selected independently, except that the lower limit is always less than the upper limit. Further, the cells may be administered in a single or in multiple administrations.
Cells provided by the methods described herein may be used immediately or may be frozen and cryopreserved for days or years. Thus, in one embodiment, the present invention provides a cryopreserved preparation of RPE cells, wherein said cryopreserved preparation comprises at least about 10¹, 10², 5×10², 10³, 5×10³, 10⁴, 5×10⁴, 10⁵, 5×10⁵, or 10⁶. Cryopreserved preparations may further comprise at least about 5×10⁶, 10⁷, 5×10⁷, 10⁸, 15×0⁸, 10⁹, 5×10⁹, or 10¹⁰cells. Similarly provided are methods of cryopreserving RPE cells. RPE cells may be cryopreserved immediately following differentiation, following in vitro maturation, or after some period of time in culture. The RPE cells in the preparations may comprise a mixture of differentiated RPE cells and mature RPE cells.

Other Pluripotent Cells

The foregoing discussion focuses on the use of human embryonic stem cells as the starting material for making unique RPE cells, as well as preparations and methods of using RPE cells differentiated from human embryonic stem cells. However, the methods and uses detailed above can similarly be used to generate RPE cells (and suitable preparations) using other types of human pluripotent stem cells as starting material. Accordingly, the invention contemplates that any of the foregoing or following aspects and embodiments of the invention can be similarly applied to methods and uses of RPE cells differentiated from other types of human pluripotent stem cells. Of particular note, given that induced pluripotent stem (iPS) cells have the characteristics of embryonic stem cells, such cells can be used to produce RPE cells that are identical or substantially identical to RPE cells differentiated from embryonic stem cells.
As used herein, the term “pluripotent stem cells” includes embryonic stem cells, embryo-derived stem cells, and induced pluripotent stem cells, regardless of the method by which the pluripotent stem cells are derived. Pluripotent stem cells are defined functionally as stem cells that: (a) are capable of inducing teratomas when transplanted in immunodeficient (SCID) mice; (b) are capable of differentiating to cell types of all three germ layers (e.g., can differentiate to ectodermal, mesodermal, and endodermal cell types); and (c) express one or more markers of embryonic stem cells (e.g., express Oct 4, alkaline phosphatase, SSEA-3 surface antigen, SSEA-4 surface antigen, nanog, TRA-1-60, TRA-1-81, SOX2, REX1, etc). Exemplary pluripotent stem cells can be generated using, for example, methods known in the art. Exemplary pluripotent stem cells include embryonic stem cells derived from the ICM of blastocyst stage embryos, as well as embryonic stem cells derived from one or more blastomeres of a cleavage stage or morula stage embryo (optionally without destroying the remainder of the embryo). Such embryonic stem cells can be generated from embryonic material produced by fertilization or by asexual means, including somatic cell nuclear transfer (SCNT), parthenogenesis, cellular reprogramming, and androgenesis. Further exemplary pluripotent stem cells include induced pluripotent stem cells (iPS cells) generated by reprogramming a somatic cell by expressing or inducing the expression of a combination of factors (herein referred to as reprogramming factors). iPS cells can be generated using fetal, postnatal, newborn, juvenile, or adult somatic cells. In certain embodiments, factors that can be used to reprogram somatic cells to pluripotent stem cells include, for example, a combination of Oct4 (sometimes referred to as Oct 3/4), Sox2, c-Myc, and Klf4. In other embodiments, factors that can be used to reprogram somatic cells to pluripotent stem cells include, for example, a combination of Oct 4, Sox2, Nanog, and Lin28. In other embodiments, somatic cells are reprogrammed by expressing at least 2 reprogramming factors, at least three reprogramming factors, or four reprogramming factors. In other embodiments, additional reprogramming factors are identified and used alone or in combination with one or more known reprogramming factors to reprogram a somatic cell to a pluripotent stem cell.
Embryonic stem cells are one example of pluripotent stem cells. Another example are induced pluripotent stem (iPS) cells.
In certain embodiments, the pluripotent stem cell is an embryonic stem cell or embryo-derived cell. In other embodiments, the pluripotent stem cell is an induced pluripotent stem cell. In certain embodiments, the pluripotent stem cell is an induced pluripotent stem cell produced by expressing or inducing the expression of one or more reprogramming factors in a somatic cell. In certain embodiments, the somatic cell is a fibroblast, such as a dermal fibroblast, synovial fibroblast, or lung fibroblast. In other embodiments, the somatic cell is not a fibroblast, but rather is a non-fibroblastic somatic cell. In certain embodiments, the somatic cell is reprogrammed by expressing at least two reprogramming factors, at least three reprogramming factors, or four reprogramming factors. In other embodiments, the somatic cell is reprogrammed by expressing at least four, at least five, or at least six reprogramming factors. In certain embodiments, the reprogramming factors are selected from Oct 3/4, Sox2, Nanog, Lin28, c-Myc, and KIf4. In other embodiments, the set of reprogramming factors expressed includes at least one, at least two, at least three, or at least four of the foregoing list of reprogramming factors, and optionally includes one or more other reprogramming factors. In certain embodiments, expression of at least one, at least two, at least three, or at least four of the foregoing or other reprogramming factors is induced by contacting the somatic cells with one or more agents, such as a small organic molecule agents, that induce expression of one or more reprogramming factors. In certain embodiments, the somatic cell is reprogramming using a combinatorial approach wherein one or more reprogramming factor is expressed (e.g., using a viral vector, plasmid, and the like) and the expression of one or more reprogramming factor is induced (e.g., using a small organic molecule.).
In certain embodiments, reprogramming factors are expressed in the somatic cell by infection using a viral vector, such as a retroviral vector or a lentiviral vector. In other embodiments, reprogramming factors are expressed in the somatic cell using a non-integrative vector, such as an episomal plasmid. When reprogramming factors are expressed using non-integrative vectors, the factors can be expressed in the cells using electroporation, transfection, or transformation of the somatic cells with the vectors.
In certain embodiments, the pluripotent stem cells are generated from somatic cells, and the somatic cells are selected from embryonic, fetal, neonatal, juvenile, or adult cells.
Methods for making iPS cells by expressing or inducing the expression of reprogramming factors are known in the art. Briefly, somatic cells are infected, transfected, or otherwise transduced with expression vectors expressing reprogramming factors. In the case of mouse, expression of four factors (Oct3/4, Sox2, c-myc, and Klf4) using integrative viral vectors was sufficient to reprogram a somatic cell. In the case of humans, expression of four factors (Oct3/4, Sox2, Nanog, and Lin28) using integrative viral vectors was sufficient to reprogram a somatic cell. However, expression (or induction of expression) of fewer factors or other reprogramming factors may also be sufficient. Additionally, the use of integrative vectors is only one mechanism for expressing reprogramming factors in the cells. Other methods including, for example, the use of non-integrative vectors can be used.
In certain embodiments, expression of at least one, at least two, at least three, or at least four of the foregoing or other reprogramming factors is induced by contacting the somatic cells with one or more agents, such as a small organic molecule agents, that induce expression of one or more reprogramming factors. In certain embodiments, the somatic cell is reprogramming using a combinatorial approach wherein one or more reprogramming factor is expressed (e.g., using a viral vector, plasmid, and the like) and the expression of one or more reprogramming factor is induced (e.g., using a small organic molecule.).
Once the reprogramming factors are expressed in the cells, the cells are cultured. Over time, cells with ES characteristics appear in the culture dish. The cells can be picked and subcultured based on, for example, ES morphology, or based on expression of a selectable or detectable marker. The cells are cultured to produce a culture of cells that look like ES cells. These cells are putative iPS cells.
To confirm the pluripotency of the iPS cells, the cells can be tested in one or more assays of pluripotency. For examples, the cells can be tested for expression of ES cell markers; the cells can be evaluated for ability to produce teratomas when transplanted into SCID mice; the cells can be evaluated for ability to differentiate to produce cell types of all three germ layers.
Once pluripotent iPS cells are obtained (either freshly derived or from a bank or stock of previously derived cells), such cells can be used to make RPE cells.
In certain embodiments, the making of iPS cells is an initial step in the production of RPE cells. In other embodiments, previously derived iPS cells are used. In certain embodiments, iPS cells are specifically generated using material from a particular patient or matched donor with the goal of generating tissue-matched RPE cells. In certain embodiments, the iPS cells are universal donor cells that are not substantially immunogenic.
The present invention will now be more fully described with reference to the following examples, which are illustrative only and should not be considered as limiting the invention described above.

EXAMPLES

The invention now being generally described, it will be more readily understood by reference to the following examples, which are included merely for purposes of illustration of certain aspects and embodiments of the present invention, and are not intended to limit the invention.
The pluripotency of embryonic stem cells is maintained in-part by the delicate reciprocal balance of the two transcription factors Oct4 (Pou5f1) and Nanog. During ES cell differentiation, the expression of these genes is downregulated, and recent evidence has suggested hypermethylation of the genes encoding these proteins to be responsible. Loss of the expression of either or both of these genes results in transcriptional activation of genes associated with cellular differentiation.
The retinal pigmented epithelium (RPE) develops from the neuroectoderm and is located adjacent to the neural retina and choroid, providing a barrier between the vascular system and the retina. The data provided herein indicates that RPE cells are genetically and functionally distinguished from surrounding photoreceptors after terminal differentiation, although the cells may share a common progenitor.
This model indicates that elements unique to our culture method claims act through FGF, EGF, WNT4, TGF-beta, and/or oxidative stress to signal MAP-Kinase and potential C-Jun terminal Kinase pathways to induce the expression of the Paired-box 6 (PAX6) transcription factor. PAX6 acts synergistically with PAX2 to terminally differentiate mature RPE via the coordination of Mit-F and Otx2 to transcribe RPE-specific genes such as Tyrosinase (Tyr), and downstream targets such as RPE-65, Bestrophin, CRALBP, and PEDF.
In order to characterize developmental stages during the human embryonic stem cell (hESc) differentiation process into retinal pigmented epithelium (RPE), several assays were used to identify the expression levels of genes key to each representative stage of development. It was discovered that several genes were uniquely expressed as mRNA and protein in RPE cells. For instance, it was discovered that PAX6 acts with PAX2 to terminally differentiate mature RPE cells via coordination of Mit-F and Otx2 to transcribe RPE-specific genes such as Tyrosinase (Tyr), and downstream targets such as RPE-65, Bestrophin, CRALBP, and PEDF. Importantly, the RPE-specific signature of mRNA and protein expression was not only unique from hES cells, but also from fetal RPE and ARPE-19 cells. The RPE cells described herein expressed multiple genes that were not expressed in hES cells, fetal RPE cells, or ARPE-19 cells (FIGS. 3, 4, and 6). The unique expression of mRNA and proteins in the RPE cells of the invention constitutes a set of markers that make these RPE cells distinct from cells in the art, such as hES cells, ARPE-19 cells, and fetal RPE cells.

Example 1: RPE Differentiation and Culture

Cryopreserved hES cells were thawed and placed into suspension culture on Lo-bind Nunclon Petri dishes in MDBK-Growth Medium (Sigma—SAFC Biosciences) or OptimPro SFM (Invitrogen) supplemented with L-Glutamine, Penicillin/Streptomycin, and B-27 supplement. The hES cells had been previously derived from single blastomeres biopsied from early cleavage stage human embryos. The remainder of the human embryo was not destroyed. Two hES cell line derived from single blastomeres were used—MA01 and MA09. The cells were cultured for 7-14 days as embryoid bodies (EBs).
After 7-14 days, the EBs were plated onto tissue culture plates coated with gelatin from porcine skin. The EBs were grown as adherent cultures for an additional 14-28 days in MDBK-Growth Medium or OptimPro SFM supplemented with L-Glutamine, and Penicillin/Streptomycin, without B-27 supplement.
From amongst the cells in the adherent culture of EBs, RPE cells become visible and are recognized by their cobblestone cellular morphology and emergence of pigmentation.

Example 2: RPE Isolation and Propagation

As differentiated RPE cells continue to appear in the adherent cultures, clusters of differentiated RPEs become visibly noticeable based on cell shape. Frozen collagenase IV (20 mg/ml) was thawed and diluted to 7 mg/ml. The collagenase IV was applied to the adherent culture containing RPE clusters (1.0 ml to each well in a 6-well plate). Over approximately 1-3 hours, the collagenase IV dissociated the cell clusters. By dissociating the RPE clusters from other cells in the culture, an enriched suspension of RPE cells was obtained. The enriched RPE cell suspension was removed from the culture plate and transferred to a 100 mm. tissue culture dish with 10 ml of MEF medium. Pigmented clumps are transferred with a stem cell cutting tool (Swemed-Vitrolife) to a well of a 6-well plate containing 3 ml of MEF media. After all clumps have been picked up, the suspension of pigmented cells is transferred to a 15 ml conical tube containing 7 ml of MEF medium and centrifuged at 1000 rpm for five minutes. The supernatant is removed. 5 ml of a 1:1 mixture of 0.25% trypsin and cell dissociation buffer is added to the cells. The cells are incubated for 10 minutes at 37° C. The cells are dispersed by pipetting in a 5 ml pipette until few clumps are remaining. 5 ml of MEF medium is added to the cells and the cells centrifuged at 1000 rpm for 5 minutes. The supernatant is removed and the cells are plated on gelatin coated plates with a split of 1:3 of the original culture in EGM-2 culture medium (Cambrex).
The culture of RPE cells was expanded by continued culture in EGM-2 medium. The cells were passaged, as necessary, at a 1:3 to 1:6 ratio using a 1:1 mixture of 0.25% trypsin EDTA and Cell Dissociation Buffer.
To enrich for mature differentiated RPE cells, the cells were grown to near confluence in EGM-2. The medium was then changed to MDBK-MM (SAFC Biosciences) to help further promote maturation of the RPE cells.

Example 3: RPE-Specific mRNA Expression Measured by Quantitative, Real-Time, Reverse Transcription PCR (qPCR)

In order to characterize developmental stages during the human embryonic stem cell (hES) differentiation process into retinal pigmented epithelium (RPE) several assays have been employed to identify the expression levels of genes key to each representative stage of development. qPCR was developed to provide a quantitative and relative measurement of the abundance of cell type-specific mRNA transcripts of interest in the RPE differentiation process. qPCR was used to determine genes that are uniquely expressed in human embryonic stem cells, in neuroretinal cells during eye development, and in RPE cells differentiated from human embryonic stem cells. The genes for each cell type are listed below in Table 1.

TABLE 1

Genes specific to hES, neuroretina/eye, and hRPE cells

hESc-Specific	Neuroectoderm/Neuroretina	RPE-Specific Genes

Oct-4 (POU5F1)	CHX10	PAX-6
Nanog	NCAM	PAX-2
Rex-1	Nestin	RPE-65
TDGF-1	Beta-Tubulin	PEDF
SOX-2		CRAMP
DPPA-2		Bestrophin
		MitF
		Otx-2
		Tyr

It was determined that hES-specific genes included Oct-4 (POU5F1), Nanog, Rex-1, TDGF-1, SOX-2, and DPPA-2. Genes specific to neural ectoderm/neural retina include CHX10, NCAM, Nestin, and Beta-Tubulin. By contrast, RPE cells differentiated from human embryonic stem cells were found to uniquely express PAX-6, PAX-2, RPE-65, PEDF, CRALBP, Bestrophin, MitF, Otx-2, and Tyr by qPCR measurement.
As evident from the qPCR data, hES-specific genes are grossly downregulated (near 1000-fold) in RPE cells derived from hES, whereas genes specific for RPE and neuroectoderm are vastly upregulated (approximately 100-fold) in RPE cells derived from hES.
In addition, qPCR analysis of fully mature RPE demonstrated a high level expression of the RPE-specific markers RPE65, Tyrosinase, PEDF, Bestrophin, MitF, and Pax6. This finding further elaborates on the ontogeny depicted above and agrees with current literature regarding the Pax2-induced regulation of MitF and downstream activation of genes associated with terminally differentiated RPE.

Example 4: RPE-Specific Protein Expression Identified by Western Blot Analysis

In order to validate the qPCR results above, and to identify proteins uniquely expressed in RPE cells, a subset of hES-specific and RPE-specific markers were chosen as candidates to assay by western blot, thereby demonstrating translation of the message detected by PCR. Western analysis provides an absolute measure of the robustness of other assays with semi-quantitative (via densitometry) and qualitative data. Results are pictured in FIG. 6. Actin was used as protein loading control.
RPE cells derived from hES cells did not express the hES-specific proteins Oct-4, Nanog, and Rex-1, whereas they expressed RPE65, CRALBP, PEDF, Bestrophin, PAX6, and Otx2. These proteins are therefore prominent markers of RPE cells differentiated from hES cells. By contrast, APRE-19 cells showed an inconclusive pattern of proteomic marker expression.

Example 5: Microarray Gene Expression Profiling of RPE Cells

Manually-purified, hES cell-differentiated hRPE in vitro undergo significant morphological events in culture during the expansion phase. Single-cell suspensions plated in thin cultures depigment and cells increase in surface area. hRPE cells maintain this morphology during expansion when the cells are rapidly dividing. However, when cell density reaches maximal capacity, RPE take on their characteristic phenotypic hexagonal shape and increase pigmentation level by accumulating melanin and lipofuscin.
The level of pigmentation played a major role in our pharmacology study in the RCS rat model. Therefore, we performed global gene expression analysis via microarray on hRPE cells derived from both of the single blastomere-derived hES cell lines MA01 and MA09. Additionally, fetal RPE, ARPE-19, and retinoblastoma cell lines were analyzed as controls.
Our data indicates that this phenotypic change is driven by a change in the global gene expression pattern of these cells, specifically with regard to the expression of PAX6, PAX2, Otx2, MitF, and Tyr.
FIG. 7 depicts a principle components analysis plot scattering of each sample based upon the minimal number of genes accounting for variability amongst each sample. Component 1, representing 69% of the variability represents the cell type, whereas Component 2, represents the cell line (i.e., genetic variability). As can clearly be seen, a near-linear scatter of gene expression profiles characterizes the developmental ontogeny of hRPE derived from hES cells.
Based on ANOVA analysis comparing the respective hES cell line to its RPE counterpart, we selected the 100 highest and lowest expressed genes, and performed computational analysis to select genes related to pleuripotency and eye development. Upregulated genes are shown in Table 2. Down regulated genes are shown in Table 3.

TABLE 2

Upregulated genes of interest reported on microarrays

Gene		Associated
Symbol	Gene Name	with	Description

BEST1/VMD2	bestrophin	RPE	Predominantly expressed in the basolateral membrane of
	(vitelliform	development	the retinal pigment epithelium. Forms calcium-sensitive
	macular		chloride channels. May conduct other physiologically
	dystrophy 2)		significant anions such as bicarbonate. Defects in BEST 1
			are the cause of vitelliform macular dystrophy type 2
			(VMD2); also known as Best macular dystrophy (BMD).
			VMD2 is an autosomal dominant form of macular
			degeneration that usually begins in childhood or
			adolescence. VMD2 is characterized by typical “egg
			yolk” macular lesions due to abnormal accumulation of
			lipofuscin within and beneath the retinal pigmented
			epithelium cells. Progression of the disease leads to
			destruction of the retinal pigmented epithelium and vision
			loss. Defects in BEST1 are a cause of adult-onset
			vitelliform macular dystrophy (AVMD). AVMD is a rare
			autosomal dominant disorder with incomplete penetrance
			and highly variable expression. Patients usually become
			symptomatic in the fourth or fifth decade of life with a
			protracted disease of decreased visual acuity.
CLUL1(retinal)	clusterin-like 1	retinal	Associated strongly with cone photoreceptors and
		development	appears in different tissues throughout retinal
			development.
CRX	cone-rod	retinal	Phosphoreceptor (cone, rod) specific paired-like homeo
	homeobox	development	domain protein,expressed in developing and mature
			phosphoreeeptor cells,binding and transactivating
			rhodopsin, homolog to Drosophila orthodentiele (Otx).
			Essential for the maintenance of mammalian
			photoreceptors.
CRYAA	crystailin,	eye	Crystallins are the dominant structural components of the
	alpha A	development	vertebrate eye lens. May contribute to the transparency
			and refractive index of the lens. Defects in CRYAA are
			the cause of zonular central nuclear cataract one of a
			considerable number of phenotypically and genotypically
			distinct forms of autosomal dominant cataract. This
			congenital cataract is a common major abnormality of the
			eye that frequently causes blindness in infants.
			Crystallins do not turn over as the lens ages, providing
			ample opportunity for post-translational modificanons or
			oxidations. These modifications may change crystallin
			solubility properties and favor senile cataract.
CRYBA1	crystallin, beta	eye	Crystallins are the dominant structural components of the
	A1	development	vertebrate eye lens. Crystallins do not turn over as the
			lens ages, providing ample opportunity for post-
			translational modifications or oxidations. These
			modifications may change crystallin solubility properties
			and favor senile cataract.
CRYBA2	crystallin, beta	eye	Crystallins are the dominant structural components of the
	A2	development	vertebrate eye lens. Crystallins do not turn over as the
			lens ages, providing ample opportunity for post-
			translational modifications or oxidations. These
			modifications may change crystallin solubility properties
			and favor senile cataract.
CRYBA4	crystallin, beta	eye	Crystallins are the dominant structural components of the
	A4	development	vertebrate eye lens. Defects in CRYBA4 are the cause of
			lamellar cataract 2. Cataracts are a leading cause of
			blindness worldwide, affecting all societies. A significant
			proportion of cases are genetically determined. More than
			15 genes for cataracts have been identified, of which the
			crystallin genes are the most commonly mutated.
			Lamellar cataract 2 is an autosomal dominant congenital
			cataract. Defects in CRYBA4 are a cause of isolated
			microphthalmia with cataract 4 (MCOPCT4).
			Microphtalmia consists of a development defect causing
			moderate or severe reduction in size of the eye. Opacities
			of the cornea and lens, searing of the retina and choroid,
			and other abnormalities like cataract may also be present
			Crystallins do not turn over as the lens ages, providing
			ample opportunity for post-translational modifications or
			oxidations. These modifications may change crystallin
			solubility properties and favor senile cataract.
CRYBB1	crystatlin, beta	eye	Crystallins are the dominant structural components of the
	B1	development	vertebrate eye lens.
CRYBB2	crystallin, beta	eye	Crystallins are the dominant structural components of the
	B2	development	vertebrate eye lens. Defects in CRYBB2 are the cause of
			congenital cerulean cataract 2 (CCA2); also known as
			congenital cataract blue dot type 2. CCA2 is a form of
			autosomal dominant congenital cataract (ADCC).
			Cerulean cataracts have peripheral bluish and white
			opacifications in concentric layers with occasional central
			lesions arranged radially. Although the opacities may be
			observed during fetal development and childhood,
			usually visual acuity is only mildly reduced until
			adulthood, when lens extraction is generally necessary.
			Defects in CRYBB2 are the cause of sutural cataract with
			punctate and cerulean opacities (CSPC). The phenotype
			associated with this form of autosomal dominant
			congenital cataract differed from all other forms of
			cataract reported. Defects in CRYBB2 are a cause of
			Coppock-like cataract (CCL). Crystallins do not turn
			over as the lens ages, providing ample opportunity for
			post-translational modifications or oxidations.
CRYBB3	crystallin, beta	eye	Crystallins are the dominant structural components of the
	B3	development	vertebrate eye lens. Defects in CRYBB3 arc the cause of
			autosomal recessive congenital nuclear cataract
			2(CATCN2); a form of nonsyndromic congenital
			cataract. Non-syndromic congenital cataracts vary
			markedly in severity and morphology, affecting the
			nuclear, cortical, polar, or subcapsular parts of the lens
			or, in severe cases, the entire lens, with a variety of types
			of opacity. They are one of the major causes of vision
			loss in children worldwide and are responsible for
			approximately one third of blindness in infants.
			Congenital cataracts can lead to permanent blindness by
			interfering with the sham focus of light on the retina
			during critical developmental intervals. Crystallins do not
			turn over as the lens ages, providing ample opportunity
			for post-translational modifications or oxidations. These
			modifications may change crystallin solubility properties
			and favor senile cataract.
DCT/TYRP2	dopachrome	pigmented	Tyrosine metabolism and Melanin biosynthesis.
	tautomerase	cells
	(dopachrome
	delta-
	isomerase,
	tyrosine-
	related protein
	2)
LHX2	LIM	development/	Transcriptional regulatory protein involved in the control
	homeobox
2	differentiation	of cell differentiation in developing lymphoid and neural
			cell types.
LIM2	lens intrinsic	eye	Present in the thicker 16-17 nm junctions of mammalian
	membrane	development	lens fiber cells, where it may contribute to cell junctional
	protein
2,		organization. Acts as a receptor for calmodulin. May play
	19 kDa		an important role in both lens development and
			cataractogenesis.
MITF	microphihalrni	RPE	Transcription factor for tyrosinase and tyrosinase- related
	a-associated	development	protein	1. Binds to a symmetrical DNA sequence (E-
	transcription		boxes) (5′-CACGTG-3′) found in the tyrosinase
	factor		promoter. Plays a critical role in the differentiation of
			various cell types as neural crest- derived melanocytes,
			mast cells, osteoclasts and optic cup-derived retinal
			pigmented epithelium. Highly expressed in retinal
			pigmented epithelium
OCA2	oculocutaneou	pigmented	Could be involved in the transport of tyrosine, the
	s albinism II	cells	precursor to melanin synthesis, within the melanocyte.
	(pink-eye		Regulates the pH of melanosome and the melanosome
	dilution		maturation. One of the components of the mammalian
	homolog,		pigmentary system. Seems to regulate the
	mouse)		postranslational processing of tyrosinase, which catalyzes
			the limiting reaction in melanin synthesis. May serve as a
			key control point at which ethnic skin color variation is
			determined. Major determinant of brown and/or blue eye
			color. Defects in OCA2 are the cause of oculocutaneous
			albinism type II (OCA2). OCA2 is an autosomal
			recessive form of albinism, a disorder of pigmentation in
			the skin, hair, and eyes. The phenotype of patients with
			OCA2 is typically somewhat less severe than in those
			with tyrosinase- deficient OCA1. There are several forms
			of OCA2, from typical OCA to relatively mild ‘autosomal
			recessive ocular albinism’ (AROA). OCA2 is the most
			prevalent type of albinism throughout the world. The
			gene OCA2 is localized to chromosome 15 at 15q11.2-
			q12
OPN3	opsin 3	eye	May play a role in encephalic photoreception. Strongly
		development	expressed in brain. Highly expressed in the preoptic area
			and paraventricular nucleus of the hypothalamus. Shows
			highly patterned expression in other regions of the brain,
			being enriched in selected regions of the cerebral cortex,
			cerebellar Purkinje cells, a subset of striatal neurons,
			selected thalamic nuclei, and a subset of interneurons in
			the ventral horn of the spinal cord.
OPN5	opsin 5	eye	Associated with visual perception and phototransduction.
		development
OTX2	orthodentiele	retinal	Probably plays a role in the development of the brain and
	homolog 2	development	the sense organs. Defects in OTX2 are the cause of
	(Drosophila)		syndromic microphthalmia 5 (MCOPS5).
			Microphthalmia is a clinically heterogeneous disorder of
			eye formation, ranging from small size of a single eye to
			complete bilateral absence of ocular tissues. Up to 80%
			of cases of microphthalia occur in association with
			syndromes that include non-ocular abnormalities such as
			cardiac defects, facial clefts, microcephaly and
			hydrocephaly. MCOPS5 patients manifest unilateral or
			bilateral microphthalmialelinical anophthalmia and
			variable additional features including coloboma,
			microcornea, cataract, retinal dystrophy, hypoplasia or
			agenesis of the optic nerve, agenesis of the corpus
			callosuln, developmental delay, joint laxity, hypotonia,
			and seizures.
PAX6	paired box	RPE	Transcription factor with important functions in the
	gene 6	development	development of the eye, nose, central nervous system and
	(aniridia,		pancreas. Required for the differentiation of pancreatic
	keratitis)		islet alpha cells (By similarity). Competes with PAX4 in
			binding to a common element in the glucagon, insulin
			and somatostatin promoters (By similarity), Isoform 5a
			appears to function as a molecular switch that specifies
			target genes. Defects in Pax6 results in a number of eye
			defects and malformations.
PHC2	polyhomeotic-	development/	Component of the Polycornb group (PcG) multiprotein
	like 2	differentiation	PRC1 complex, a complex required to maintain the
	(Drosophila)		transcriptionally repressive state of many genes,
			including Hox genes, throughout development, PcG
			PRC1 complex acts via chromatin remodeling and
			modification of histones; it mediates monoubiquitination
			of histone H2A ‘Lys-119’, rendering chromatin heritably
			changed in its expressibility.
PKNOX2	PBX/knotted 1	developmem/	Known to be involved in development and may, along
	homeobox 2	differentiation	with MEIS, control Pax6.
PRKCA	protein kinase	cellular	Very important for cellular signaling pathways such as
	C, alpha	signalling	the MAPK, Wnt, PI3, VEGF and Calcium pathways.
PROX1	prospero-	eye	May play a fundamental role in early development of
	related	development	CNS. May regulate gene expression and development of
	homeobox 1		postmitotic undifferentiated young neurons. Highly
			expressed in lens, retina, and pancreas.
PRRX1	paired related	development/	Necessary for development. Transcriptional coactivator,
	homeobox 1	differentiation	enhancing the DNA-binding activity of serum response
			factor.
RAI1	retinoic acid	development/	May function as a transcriptional regulator. Regulates
	induced 1	differentiation	transcription through chromatin remodeling by
			interacting with other proteins in chromatin as well as
			proteins in the basic transcriptional machinery. May be
			important for embryonic and postnatal development. May
			be involved in neuronal differentiation.
RARA	retinoic acid	development/	This is a receptor for retinoic acid. This metabolite has
	receptor, alpha	differentiation	profound effects on vertebrate development. This
			receptor controls cell function by directly regulating gene
			expression.
RARB	retinoic acid	development/	This is a receptor for retinoic acid. This metabolite has
	receptor, beta	differentiation	profound effects on vertebrate development. This
			receptor controls cell function by directly regulating gene
			expression.
RARRES1	retinoic acid	development/	Associated with differentiation and control
	receptor	differentiation	proliferation. May be a growth regulator that mediates
	responder		some of the growth suppressive effects of
	(tazarotene		retinoids.
	induced) 1
RAX	retina and	eye	Plays a critical role in eye formation by regulating the
	anterior neural	development	initial specification of retinal cells and/or their
	fold homeobox		subsequent proliferation. Binds to the photoreceptor
			conserved element-I (PCE-1/Ret 1) in the photoreceptor
			cell-specific arrestin promoter.
RB1	retinoblastomal	development/	An important regulator of other genes and cell growth,
	(including	differentiation	Defects in RB1 are the cause of childhood cancer
	osteosarcoma)		retinoblastoma (RB). RB is a congenital malignant tumor
			that arises from the nuclear layers of the retina.
RDH5	retinol	RPE	retinol dehydrogenase 5,11-cis,expressed in retinal
	dehydrogenase	development	pigmented epithelium,formerly RDH1. Stereospecific
	5 (11-cis/9-cis)		11-cis retinol dehydrogenase, which catalyzes the final
			step in the biosynthesis of 11-cis retinaldehyde, the
			universal chromophore of visual pigments. Abundant in
			the retinal pigmented epithelium. Defects in RDH5 are a
			cause of fundus albipurictatus (FA). FA is a rare form of
			stationary night blindness characterized by a delay in the
			regeneration of cone and rod photopigments.
RGR	retinal G	RPE	Preferentially expressed at high levels in the retinal
	protein	development	pigmented epithelium (RPE) and Mueller cells of the
	coupled		neural retina. Retinal opsin related, (rhodopsin
	receptor		homolog)expressed in the retinal pigmented epithelium,
			encoding a retinaldehyde, preferentially all-trans retinal,
			binding protein, G protein coupled receptor superfamily.
RLBP1/CRAL	retinaldehyde	RPE	Carries 11-cis-retinol and 11-cis-retinaldehyde as
BP1	binding	development	endogenous ligands and may be a functional component
	protein
1		of the visual cycle. Defects in RLBP1 are a cause of
			autosomal recessive retinitis pigmentosa (arRP). Retinitis
			pigmentosa (RP) leads to degeneration of retinal
			photoreceptor cells.
			Defects in RLBP1 are the cause of Bothnia retinal
			dystrophy, also known as Vasterbotten dystrophy. It is
			another form of autosomal recessive retinitis pigmentosa.
			Defects in RLBP1 are the cause of Newfoundland rod-
			cone dystrophy (NFRCD). NFRCD is a retinal dystrophy
			reminiscent of retinitis punctata albescens but with a
			substantially lower age at onset and more-rapid and
			distinctive progression.
RPE65	retinal pigment	RPE	Retinal pigmented epithelium specific. Retinal
	epithelium-	development	pigmented epithelium-specific 65, major microsomal
	specific		protein, minor role in the isomerisation of ail-trans to 11-
	protein 65 kDa		cis retinal, associated with the endoplasmic reticulum,
			also expressed in renal tumor cells. Plays important roles
			in the production of 11-cis retinal and in visual pigment
			regeneration.
RRH	retinal pigment	RPE	Found only in the eye, where it is localized to the retinal
	epithelium-	development	pigment epithelium (RPE). In the RPE, it is localized to
	derived		the microvilli that surround the photoreceptor outer
	rhodopsin		segments. May play a role in rpe physiology either by
	homolog		detecting light directly or by monitoring the
			concentration of retinoids or other photoreceptor-derived
			compounds.
RTN1	reticulon	1	development/	Expressed in neural and neuroendocrine tissues and cell
		differentiation	cultures derived therefrom. Expression of isoform RTN1-
			C is strongly correlated with neuronal differentiation.
RXRB	retinoid X	development/	Nuclear hormone receptor. Involved in the retinoic acid
	receptor, beta	differentiation	response pathway. Binds 9-cis retinoic acid (9C-RA),
			obligate member of heterodimeric nuclear
			receptors, steroid/thyroid/retinoic receptor superfamily.
RXRG	retinoid X	development/	Nuclear hormone receptor. Involved in the retinoic acid
	receptor,	differentiation	response pathway. Binds 9-cis retinoic acid (9C-RA),
	gamma		obligate member of heterodimeric nuclear
			receptors, steroid/thyroid/retinoic receptor superfamily.
SERPINF1/PE	serpin	RPE	Specific expression in retinal pigment epithelial cells and
DF	peptidase	development	blood plasma. Neurotrophic protein; induces extensive
	inhibitor, clade		neuronal differentiation in retinoblastoma cells.
	F (alpha-2
	antiplasmin,
	pigment
	epithelium
	derived
	factor),
	member 1
SIX3	sine oculis	eye	Expressed during eye development in midline forebrain
	homeobox	development	and in anterior region of the neural plate especially inner
	homolog 3		retina and later in ganglion cells and in cells of the inner
	(Drosophila)		nuclear layer, involved in regulation of eye development.
SOX10	SKY (sex	development/	Transcription factor that seems to function synergistically
	determining	differentiation	with other development associated proteins. Could
	region Y)-box		confer cell specificity to the function of other
	10		transcription factors in developing and mature glia.
SOX5	SRY (sex	development/	Expression is associated with craniofacial, skeletal and
	determining	differentiation	cartilage development and is highly expressed in brain,
	region Y)-box		testis and various tissues.
	5
SOX6	SRY (sex	development/	Expression is associated with craniofacial, skeletal and
	determining	differentiation	cartilage development and is highly expressed in brain,
	region Y)-box		testis and various tissues.
	6
SOX8	SRY (sex	development/	May play a role in central nervous system, limb and
	determining	differentiation	facial development.
	region Y)-box
	8
SOX9	SRY (sex	development/	Plays an important role in the normal development. May
	determining	differentiation	regulate the expression of other genes involved for
	region Y)-box		skeletal and cartilage formation by acting as a
	9 (campomelic		transcription factor for these genes.
	dysplasia,
	autosomal sex -
	reversal)
TIMP3	TIMP	RPE	Matrix metalloprotemase, tissue inhibitor 3, expressed in
	metallopeptidase	development	retinal pigment epithelium, placenta, localized in
	inhibitor 3		extracellular matrix. Complexes with metalloproteinases
	(Sorsby fundus		(such as collagenases) and irreversibly inactivates them.
	dystrophy,		May form part of a tissue- specific acute response to
	pseudoinflam		remodeling stimuli. Defects On TIMP3 are the cause of .
	matory)		Sorsby fundus dystrophy (SFD). SFD is a rare autosomal
			dominant macular disorder with an age of onset in the
			fourth decade. It is characterized by loss of central vision
			from subretinal neovascularization and atrophy of the
			ocular tissues.

TTR	transthyretin (prealbumin,	Thyroid hormone-binding protein. Probably transports
	amyloidosis type I)	thyroxine from the bloodstream to the brain. Defects in
		TTR are the cause of arnyloidosis VII; also known as
		leptomeningeal amyloidosis or meningocerebrovascular
		amyloidosis. Leptomeningeal amyloidosis is distinct from
		other forms of transthyretin amyloidosis in that it exhibits
		primary involvement of the central nervous system.
		Neuropathologic examination shows amyloid in the walls
		of leptomeningeal vessels, in pia arachnoid, and subpial
		deposits. Some patients also develop vitreous ainyloid
		deposition that leads to visual impairment
		(oculoleptomeningeal amyloidosis).

TYR	tyrosinase	pigmented	This is a copper-containing oxidase that functions in the
	(oculocutanco	cells	formation of pigments such as melanins and other
	us albinism		polyphenolic compounds. Defects in TYR are the cause
	IA)		of oculocutaneous albinism type IA (OCA-IA). OCA-I,
			also known as tyrosinase negative oculocutaneous
			albinism, is an autosomal recessive disorder characterized
			by absence of pigment in hair, skin and eyes. OCA-I is
			divided into 2 types: type IA, characterized by complete
			lack of tyrosinase activity due to production of an
			active enzyme, and type IB characterized by reduced
			activity of tyrosinase. OCA-IA patients presents with the
			life-long absence of melanin pigment after birth and
			manifest increased sensitivity to ultraviolet radiation and
			to predisposition to skin cancer defects in TYR are the
			cause of ocutocutaneous albinism type IB (OCA-1B); also
			known as albinism yellow mutant type. OCA-IB patients
			have white hair at birth that rapidly turns yellow or blond.
TYRP1	tyrosinase-	pigmented	Specific expression in Pigment cells. Oxidation of 5,6-
	related protein 1	cells	dihydroxyindole-2-carboxylic acid (DHICA) into indole-
			5,6-quinone-2-carboxylic acid. May regulate or influence
			the type of melanin synthesized. Defects in TYRP1 are
			the cause of rufous oculocutaneous albinism (ROCA).
			OCA occurs in blacks and is characterized by bright
			copper-red coloration of the skin and hair and dilution of
			the color of the iris. Defects-in TYRP1 are the cause of
			oculocutaneous albinism type III (OCA-III) also known
			as OCA3. OCA-III is a form of albinism with only
			moderate reduction of pigment. Individuals with OCA-III
			are recognized by their reddish skin and hair color.

TABLE 3

Down regulated genes of interest reported on microarrays

Gene Symbol	Gene Name	Associated with	Description

ALPL	alkaline	ES cells	Elevated expression of this enzyme is associated with
	phosphatase		undifferentiated pluripotent stem cell.
CECR2	cat eye		Part of the CERF (CECR2-containing-remodeling
	syndrome		factor) complex, which facilitates the perturbation of
	chromosome		chromatin structure in an ATP-dependent manner. May
	region,		be involved through its interaction with LRPPRC in the
	candidate 2		integration of cytoskeletal network with vesicular
			trafficking, nucleocytosolic shuttling, transcription,
			chromosome remodeling and cytokinesis.
			Developmental disorders are associated with the
			duplication of the gene.
DCAMKL1	doublecortin	Embryonic	Probable kinase that may be involved in a calcium-
	and CaM	development	signaling pathway controlling neuronal migration in
	kinase-like 1		the developing brain.
DPPA2	developmental	ES cells	May play a role in maintaining cell pluripotentiality,.
	pluripotency
	associated 2
DPPA3	developmental	ES cells	May play a role in maintaining cell pluripotentiality.
	pluripoteney
	associated 3
DPPA4	developmental	ES cells	May indicate cell pluripotenliality.
	pluripotency
	associated 4
DPPA5/Esg1	developmental	ES cells	Embryonic stem cell marker.
	pluripotency
	associated
	5/Embryonic
	stem
	cellspecific
	gene
1
FOXD3	fork head box	Pluripotence	Required for maintenance of pluripotent cells in the
	D3		pre-implantation and peri-implantation stages of
			embryogenesis.
LIDIECAT11	LINE-1 type	ES cells	Embryonic stem cell marker.
	transposase
	domain
	containing
	1/ES cell
	associated
	transcript 11
NANOG	Nanog	ES cells	Embryonic stem cell marker. Transcription regulator
	homeobox		involved in inner cell mass and embryonic stem (ES)
			cells proliferation and self-renewal. Imposes
			pluripotency on ES cells and prevents their
			differentiation towards extraembryonic endoderm and
			trophectoderin lineages.
NCAM1	neural cell	neuroprogenitors	This protein is a cell adhesion molecule involved in
	adhesion		neuron-neuron adhesion, neurite fasciculation,
	molecule 1		outgrowth of neurites, etc.
NES/Nestin	nestin	ES cells	Neuralprogenitor cells.
NODAL	nodal	Embryonic	Essential for mesoderm formation and axial patterning
		development	during embryonic development.
NR5A2/FTF	nuclear	Embryonic	May contribute to the development and regulation of
	receptor	development	liver and pancreas-specific genes and play important
	subfamily 5,		roles in embryonic development.
	group A,
	member 2
POU5F1/Oct-	POU domain,	ES cells	Embryonic stem cell marker. Indicator of “Stemness”.
3/4	class 5,		Transcription factor that binds to the octamer motif(5′-
	transcription		ATTTGCAT-3′). Prime candidate for an early
	factor
1		developmental control gene.
SOX17	SRY (sex	Inhibitor of	Negative regulator of the Wnt signalling pathway.
	determining	differentiation
	region Y)-box
	17
SOX2	SRY (sex	ES cells	Indicator of “Stemness”. Expressed in inner cell mass,
	determining		primitive ectoderm and developing CNS.
	region Y)-box
	2
TBX3	T-box 3 (ulnar	Embryonic	Transcriptional repressor involved in developmental
	mammary	development	processes. Murine T-box gene Tbx3
	syndrome)		(T, brachyury) homolog, putative transcription
			factor, pairing with TBX5, homolog to Drosophila
			optomotor-blind gene (omb), involved in optic lobe and
			wing development,involved in developmental
			regulation, expressed in anterior and posterior mouse
			limb buds, widely expressed in adults
TDGF1/Cripto	teratocarcinom	ES cells	Indicator of “Stemness”. Could play a role in the
-1	a-derived		determination of the epiblastic cells that subsequently
	growth factor		give rise to the mesoderm.
	1
TEK/VMCM	TEK tyrosine	Early	This protein is a protein tyrosine-kinase
	kinase.	Endothelial	transmembrane receptor for angiopoietin 1. It may
	endothelial	progenitors	constitute the earliest mammalian endothelial cell
	(venous		lineage marker. Probably regulates endothelial cell
	malformations,		proliferation, differentiation and guides the proper
	multiple		patterning of endothelial cells during blood vessel
	cutaneous and		formation
	mucosal)
TUBB2A,	tubulin, beta	neuroprogenitors	Tubulin is the major constituent of microtubules. It
TUBB2B	2A, tubulin,		binds two moles of GTP, one at an exchangeable site
	beta 2B		on the beta chain and one at a non-exchangeable site on
			the alpha-chain. Often associated with the formation of
			gap junctions in neural cells.
TUBB2A,	tubulin, beta	neuroprogenitors	Tubulin is the major constituent of mierotubales. It
TUBB2B,	2A, tubulin,		binds two moles of GTP, one at an exchangeable site
TUBB2C,	beta 2B,		on the beta chain and one at a non-exchangeable site on
TUBB3,	tubulin, beta		the alpha-chain. Often associated with the formation of
TUBB4	2C, tubulin,		gap junctions in neural cells.
	beta 3, tubulin,
	beta 4
TUBB3	tubulin, beta 3	neuroprogenitors	Tubulin is the major constituent of microtubules. It
			binds two moles of GTP, one at an exchangeable site
			on the beta chain and one at a non-exchangeable site on
			the alpha-chain. Often associated with the formation of
			gap junctions in neural cells.
TWIST1	twist homolog	Inhibitor of	Probable transcription factor, which negatively
	1	differentiation	regulates cellular determination and differentiation.
UTF1	undifferentiated	ES cells	Embryonic stem cell marker. Acts as a transcriptional
	embryonic		coactivator of ATF2.
	cell
	transcription
	factor
1
VSNL1	visinin-like 1	Inhibior of	Regulates the inhibition of rhodopsin phosphorylation.
		rhodopsin
ZFP42/Rex-1	zinc finger	ES cells	Embryonic Stem cell marker.
	protein 42

The present disclosure demonstrates that human RPE cells can be reliably differentiated and expanded from human ES cells under well-defined and reproducible conditions—representing an inexhaustible source of cells for patients with retinal degenerative disorders. The concentration of these cells would not be limited by availability, but rather could be titrated to the precise clinical requirements of the individual. Repeated infusion or transplantation of the same cell population over the lifetime of the patient would also be possible if deemed necessary by the physician. Furthermore, the ability to create banks of matching or reduced-complexity HLA hES lines from which RPE cells could be produced could potentially reduce or eliminate the need for immunosuppressive drugs and/or immunomodulatory protocols altogether.
This disclosure also demonstrates that RPE cells differentiated by the methods described herein express multiple genes that are not expressed by hES cells, fetal RPE cells, or ARPE-19 cells. The unique molecular fingerprint of mRNA and protein expression in the ES-cell derived RPE cells of the invention constitutes a set of markers, such as RPE-65, Bestrophin, PEDF, CRABLP, Otx2, Mit-F, PAX6 and PAX2, that make these RPE cells distinct from cells in the art, such as hES cells, ARPE-19 cells, and fetal RPE cells.

Example 6: Rescue of Visual Function Using RPE Cells from Embryonic Stem Cells

Certain retinal diseases are characterized by degeneration of the retinal pigment epithelium (RPE) which in turn results in photoreceptor loss. Examples include Stargardt's macular dystrophy in humans and the genetically-determined dystrophy in the Royal College of Surgeons (RCS) rat. Such a process may also play a role in macular degeneration, affecting more than 10 million people in the US alone.
We investigated conditions under which highly characterized human RPE cells derived from embryonic stem cell lines and manufactured under GMP-compliant conditions could optimally rescue visual function in the RCS rat. MAO1- and MAO9-derived RPE cells were injected into the subretinal space of 23 day-old (P23) RCS rats, maintained post-operatively on oral cyclosporine A immunosuppression. Functional efficacy was tested by threshold optomotor acuity and luminance thresholds recorded from the superior colliculus. All treated eyes were compared with sham-injected and untreated eyes. Histological examination was performed after these functional assessments.
Experimental results showed a clear dose-response in RCS rats. Administration of a preparation comprising 5×10⁴RPE cells gave only slightly better optomotor thresholds than shams, whereas a preparation comprising 2×10⁵RPE cells gave improved performance versus controls. Preparations comprising 5×10⁵RPE cells produced superior performance that was sustained over time. Animals performed at 0.48 c/d at P60, significantly (p<0.001) better than shams (0.26 c/d) with some treated eyes showing normal thresholds (0.6 c/d) and over 0.5 c/d in the best cases at P90 (sham and untreated animals gave a figure 0.16 c/d, a level that indicated substantial visual impairment).
Superior colliculus recordings at P94 also showed much lower luminance threshold responses in RPE cell-injected eyes with some individual recordings within the normal range. Histological studies showed donor cells disposed as a semi-continuous, pigmented cell layer immediately internal to endogenous, host RPE. The donor RPE cells were positive for RPE65 and bestrophin, indicating that the transplanted cells were RPE cells and that the cell maintain their cell fate following transplantation.
Additionally, transplanted animals maintained photoreceptor thickness in comparison to control animals. The photoreceptors in RPE treatment animals were 4-5 cells thick in the rescued area compared with only a single layer in sham and untreated controls.
The results indicate that well-characterized RPE cells derived from embryonic stem cells and manufactured under GMP-compliant conditions survive after transplantation to the subretinal space of RCS rats, do not migrate into the retina and continue to express molecules characteristic of RPE. Most importantly, they achieve significant rescue of visual function in a dose dependent fashion in an animal model of photoreceptor degeneration. The data further suggest that these cells may be effective in limiting and/or reversing the deterioration of vision that accompanies RPE-driven photoreceptor degeneration in human disease.

REFERENCES

Strauss, O., Stumpff, F., Mergler, S., Wienrich, M. & Wiederholt, M. The Royal College of Surgeons rat: an animal model for inherited retinal degeneration with a still unknown genetic defect. Acta anatomica 162, 101-111 (1998).
McLaren, M. J., An, W., Brown, M. E. & Inana, G. Analysis of basic fibroblast growth factor in rats with inherited retinal degeneration. FEBS letters 387, 63-70 (1996).
McHenry, C. L., et al. MERTK arginine-844-cysteine in a patient with severe rod-cone dystrophy: loss of mutant protein function in transfected cells. Investigative ophthalmology & visual science 45, 1456-1463 (2004).
Duncan, J. L., et al. An RCS-like retinal dystrophy phenotype in mer knockout mice. Investigative ophthalmology & visual science 44, 826-838 (2003).
Vollrath, D., et al. Correction of the retinal dystrophy phenotype of the RCS rat by viral gene transfer of Mertk. Proceedings of the National Academy of Sciences of the United States of America 98, 12584-12589 (2001).
Gal, A., et al. Mutations in MERTK, the human orthologue of the RCS rat retinal dystrophy gene, cause retinitis pigmentosa. Nature genetics 26, 270-271 (2000).
D'Cruz, P. M., et al. Mutation of the receptor tyrosine kinase gene Mertk in the retinal dystrophic RCS rat. Human molecular genetics 9, 645-651 (2000).
Piesse, C., et al. Expression of aminopeptidase B in the developing and adult rat retina. Exp Eye Res 79, 639-648 (2004).
Craitoiu, S. & Florescu, M. [The development of the pigment epithelium and its interrelation with uveal pigment cells]. Oftalmologia 41, 12-14 (1997).
Mitashov, V. I. [Cell sources, regulatory factors and gene expression in the regeneration of the crystalline lens and retina in vertebrate animals]. Izvestiia Akademii nauk, 298-318 (1996).
Grefenstette, J., Kim, S. & Kauffman, S. An analysis of the class of gene regulatory functions implied by a biochemical model. Biosystems 84, 81-90 (2006).
Melnick, M., Chen, H., Min Zhou, Y. & Jaskoll, T. The functional genomic response of developing embryonic submandibular glands to NF-kappa B inhibition. BMC developmental biology 1, 15 (2001).
Palumbo, M. C., Colosimo, A., Giuliani, A. & Farina, L. Essentiality is an emergent property of metabolic network wiring. FEBS letters 581, 2485-2489 (2007).
Papin, J. A., Price, N. D., Edwards, J. S. & Palsson, B. B. The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy. J Theor Biol 215, 67-82 (2002).
Price, N. D., Papin, J. A. & Palsson, B. O. Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysis. Genome research 12, 760-769 (2002).
Yun, A. J., Lee, P. Y. & Doux, J. D. Efficient inefficiency: biochemical “junk” may represent molecular bridesmaids awaiting emergent function as a buffer against environmental fluctuation. Medical hypotheses 67, 914-921 (2006).
Federici, D. & Downing, K. Evolution and development of a multicellular organism: scalability, resilience, and neutral complexification. Artificial life 12, 381-409 (2006).
Csermely, P., Soti, C. & Blatch, G. L. Chaperones as parts of cellular networks. Advances in experimental medicine and biology 594, 55-63 (2007).
Gillies, R. J. & Gatenby, R. A. Adaptive landscapes and emergent phenotypes: why do cancers have high glycolysis? J Bioenerg Biomembr (2007).
Henshall, D. C. & Murphy, B. M. Modulators of neuronal cell death in epilepsy. Curr Opin Pharmacol (2007).
Mekel-Bobrov, N., et al. The ongoing adaptive evolution of ASPM and Microcephalin is not explained by increased intelligence. Human molecular genetics 16, 600-608 (2007).
Moudy, R. M., Meola, M. A., Morin, L. L., Ebel, G. D. & Kramer, L. D. A newly emergent genotype of West Nile virus is transmitted earlier and more efficiently by Culex mosquitoes. The American journal of tropical medicine and hygiene 77, 365-370 (2007).
Sanchez, J. A., Aguilar, C., Dorado, D. & Manrique, N. Phenotypic plasticity and morphological integration in a marine modular invertebrate. BMC Evol Biol 7, 122 (2007).
Marc, R. E., Jones, B. W., Watt, C. B. & Strettoi, E. Neural remodeling in retinal degeneration. Progress in retinal and eye research 22, 607-655 (2003).
Yeo, S., et al. Characterization of DNA methylation change in stem cell marker genes during differentiation of human embryonic stem cells. Biochemical and biophysical research communications 359, 536-542 (2007).
Wang, Z. X., et al. Zfp206 is a transcription factor that controls pluripotency of embryonic stem cells. Stem cells (Dayton, Ohio) 25, 2173-2182 (2007).
Ulloa-Montoya, F., et al. Comparative transcriptome analysis of embryonic and adult stem cells with extended and limited differentiation capacity. Genome Biol 8, R163 (2007).
Sumi, T., Tsuneyoshi, N., Nakatsuji, N. & Suemori, H. Apoptosis and differentiation of human embryonic stem cells induced by sustained activation of c-Myc. Oncogene 26, 5564-5576 (2007).
Lavial, F., et al. The Oct4 homologue PouV and Nanog regulate pluripotency in chicken embryonic stem cells. Development (Cambridge, England) 134, 3549-3563 (2007).
Greco, S. J., Liu, K. & Rameshwar, P. Functional Similarities among Genes Regulated by OCT4 in Human Mesenchymal and Embryonic Stem Cells. Stem cells (Dayton, Ohio) (2007).
Babaie, Y., et al. Analysis of Oct4-dependent transcriptional networks regulating self-renewal and pluripotency in human embryonic stem cells. Stem cells (Dayton, Ohio) 25, 500-510 (2007).
Zhang, X., et al. Derivation of human embryonic stem cells from developing and arrested embryos. Stem cells (Dayton, Ohio) 24, 2669-2676 (2006).
Xiao, L., Yuan, X. & Sharkis, S. J. Activin A maintains self-renewal and regulates fibroblast growth factor, Wnt, and bone morphogenic protein pathways in human embryonic stem cells. Stem cells (Dayton, Ohio) 24, 1476-1486 (2006).
Player, A., et al. Comparisons between transcriptional regulation and RNA expression in human embryonic stem cell lines. Stem cells and development 15, 315-323 (2006).
Pereira, L., Yi, F. & Merrill, B. J. Repression of Nanog gene transcription by Tcf3 limits embryonic stem cell self-renewal. Mol Cell Biol 26, 7479-7491 (2006).
O'Neill, L. P., VerMilyea, M. D. & Turner, B. M. Epigenetic characterization of the early embryo with a chromatin immunoprecipitation protocol applicable to small cell populations. Nature genetics 38, 835-841 (2006).
Lagarkova, M. A., Volchkov, P. Y., Lyakisheva, A. V., Philonenku, E. S. & Kiselev, S. L. Diverse epigenetic profile of novel human embryonic stem cell lines. Cell cycle (Georgetown, Ill. 5, 416-420 (2006).
He, S., et al. Developmental expression of pluripotency determining factors in caprine embryos: novel pattern of NANOG protein localization in the nucleolus. Molecular reproduction and development 73, 1512-1522 (2006).
De Jong, J., Weeda, S., Gillis, A. J., Oosterhuis, J. W. & Looijenga, L. H. Differential methylation of the OCT3/4 upstream region in primary human testicular germ cell tumors. Oncol Rep 18, 127-132 (2007).
Hattori, N., et al. Epigenetic regulation of Nanog gene in embryonic stem and trophoblast stem cells. Genes Cells 12, 387-396 (2007).
Hellman, A. & Chess, A. Gene body-specific methylation on the active X chromosome. Science (New York, N. Y 315, 1141-1143 (2007).
Ohm, J. E., et al. A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hyperrnethylation and heritable silencing. Nature genetics 39, 237-242 (2007).
Mitalipov, S., Clepper, L., Sritanaudomchai, H., Fujimoto, A. & Wolf, D. Methylation status of imprinting centers for H19/IGF2 and SNURF/SNRPN in primate embryonic stem cells. Stem cells (Dayton, Ohio) 25, 581-588 (2007).
Mitalipov, S. M. Genomic imprinting in primate embryos and embryonic stem cells. Reproduction, fertility, and development 18, 817-821 (2006).
Greber, B., Lehrach, H. & Adjaye, J. Silencing of core transcription factors in human EC cells highlights the importance of autocrine FGF signaling for self-renewal. BMC developmental biology 7, 46 (2007).
McEwen, B. S. Mood disorders and allostatic load. Biological psychiatry 54, 200-207 (2003).
Koob, G. F. Alcoholism: allostasis and beyond. Alcoholism, clinical and experimental research 27, 232-243 (2003).
Goldstein, D. S. & McEwen, B. Allostasis, homeostats, and the nature of stress. Stress (Amsterdam, Netherlands) 5, 55-58 (2002).
Wei, Q., et at Overexpressing the glucocorticoid receptor in forebrain causes an aging-like neuroendocrine phenotype and mild cognitive dysfunction. J Neurosci 27, 8836-8844 (2007).
McEwen, B. S. Physiology and neurobiology of stress and adaptation: central role of the brain. Physiological reviews 87, 873-904 (2007).
Kim, Y., Laposky, A. D., Bergmann, B. M. & Turek, F. W. Repeated sleep restriction in rats leads to homeostatic and allostatic responses during recovery sleep. Proceedings of the National Academy of Sciences of the United States of America 104, 10697-10702 (2007).
Pinilla, I., Lund, R. D. & Sauve, Y. Cone function studied with flicker electroretinogram during progressive retinal degeneration in RCS rats. Exp Eye Res 80, 51-59 (2005).
Crafoord, S., Geng, L., Seregard, S. & Algvere, P. V. Experimental transplantation of autologous iris pigment epithelial cells to the subretinal space. Acta ophthalmologica Scandinavica 79, 509-514 (2001).
Chuang, E. L. & Bird, A. C. Repair after tears of the retinal pigment epithelium. Eye (London, England) 2 (Pt 1), 106-113 (1988).
Ricci, F., et at Modulation of Ku70/80, clusterin/ApoJ isoforms and Bax expression in indocyanine-green-mediated photo-oxidative cell damage. Ophthalmic research 39, 164-173 (2007).
Gregerson, D. S., Lew, K. L., McPherson, S. W., Heuss, N. D. & Ferrington, D. A. RPE cells resist bystander killing by CTLs, but are highly susceptible to antigen-dependent CTL killing. Investigative ophthalmology & visual science 47, 5385-5394 (2006).
Kim, S. J., et al. Differential expression of vitreous proteins in proliferative diabetic retinopathy. Current eye research 31, 231-240 (2006).
Linberg, K. A., Fariss, R. N., Heckenlively, J. R., Farber, D. B. & Fisher, S. K. Morphological characterization of the retinal degeneration in three strains of mice carrying the rd-3 mutation. Visual neuroscience 22, 721-734 (2005).
Qin, Y., et al. Long-range activation of Sox9 in Odd Sex (Ods) mice. Human molecular genetics 13, 1213-1218 (2004).
Nishiwaki, A., Ueda, T., Ugawa, S., Shimada, S. & Ogura, Y. Upregulation of P-selectin and intercellular adhesion molecule-1 after retinal ischemia-reperfusion injury. Investigative ophthalmology & visual science 44, 4931-4935 (2003).
Ida, H., Boylan, S. A., Weigel, A. L. & Hjelmeland, L. M. Age-related changes in the transcriptional profile of mouse RPE/choroid. Physiological genomics 15, 258-262 (2003).
Weigel, A. L., Ida, H., Boylan, S. A. & Hjelmeland, L. M. Acute hyperoxia-induced transcriptional response in the mouse RPE/choroid. Free radical biology & medicine 35, 465-474 (2003).
Sauka-Spengler, T., Baratte, B., Shi, L. & Mazan, S. Structure and expression of an Otx5-related gene in the dogfish Scyliorhinus canicula: evidence for a conserved role of Otx5 and Crxgenes in the specification of photoreceptors. Development genes and evolution 211, 533-544 (2001).
Lovicu, F. J., Kolle, G., Yamada, T., Little, M. H. & McAvoy, J. W. Expression of Crim 1 during murine ocular development. Mechanisms of development 94, 261-265 (2000).
Otani, A., et al. Expressions of angiopoietins and Tie2 in human choroidal neovascular membranes. Investigative ophthalmology & visual science 40, 1912-1920 (1999).
Faure, V., Courtois, Y. & Goureau, O. Differential regulation of nitric oxide synthase-II mRNA by growth factors in rat, bovine, and human retinal pigmented epithelial cells. Ocular immunology and inflammation 7, 27-34 (1999).
Mousa, S. A., Lorelli, W. & Campochiaro, P. A. Role of hypoxia and extracellular matrix-integrin binding in the modulation of angiogenic growth factors secretion by retinal pigmented epithelial cells. Journal of cellular biochemistry 74, 135-143 (1999).
Collinge, J. E., Simirskii, V. N. & Duncan, M. K. Expression of tissue plasminogen activator during eye development. Exp Eye Res 81, 90-96 (2005).
Fisher, S. K., Lewis, G. P., Linberg, K. A. & Verardo, M. R. Cellular remodeling in mammalian retina: results from studies of experimental retinal detachment. Progress in retinal and eye research 24, 395-431 (2005).
Francis, M. K., et al. Loss of EPC-1/PEDF expression during skin aging in vivo. The Journal of investigative dermatology 122, 1096-1105 (2004).
Marc, R. E. & Jones, B. W. Retinal remodeling in inherited photoreceptor degenerations. Molecular neurobiology 28, 139-147 (2003).
Jones, B. W., et al. Retinal remodeling triggered by photoreceptor degenerations. The Journal of comparative neurology 464, 1-16 (2003).
MacLaren, R. E., et al. Autologous transplantation of the retinal pigment epithelium and choroid in the treatment of neovascular age-related macular degeneration. Ophthalmology 114, 561-570 (2007).
Rezai, K. A., Farrokh-Siar, L., Godowski, K., Patel, S. C. & Ernest, J. T. A model for xenogenic immune response. Graefes Arch Clin Exp Ophthalmol 238, 352-358 (2000).
Sauve, Y., Klassen, H., Whiteley, S. J. & Lund, R. D. Visual field loss in RCS rats and the effect of RPE cell transplantation. Experimental neurology 152, 243-250 (1998).
Oganesian, A., et al. Scanning and transmission electron microscopic findings during RPE wound healing in vivo. International ophthalmology 21, 165-175 (1997).
Kohen, L., Enzmann, V., Faude, F. & Wiedemann, P. Mechanisms of graft rejection in the transplantation of retinal pigment epithelial cells. Ophthalmic research 29, 298-304 (1997).
Tamai, M. [Retinal pigment epithelial cell transplantation: perspective]. Nippon Ganha Gakkai zasshi 100, 982-1006 (1996).
Gregerson, D. S., Heuss, N. D., Lew, K. L., McPherson, S. W. & Ferrington, D. A. Interaction of retinal pigmented epithelial cells and CD4 T cells leads to T-cell anergy. Investigative ophthalmology & visual science 48, 4654-4663 (2007).
Sarks, S., Cherepanoff, S., Killingsworth, M. & Sarks, J. Relationship of Basal laminar deposit and membranous debris to the clinical presentation of early age-related macular degeneration. Investigative ophthalmology & visual science 48, 968-977 (2007).
Aisenbrey, S., et al. Retinal pigment epithelial cells synthesize laminins, including laminin 5, and adhere to them through alpha3- and alpha6-containing integrins. Investigative ophthalmology & visual science 47, 5537-5544 (2006).
Espinosa-Heidmann, D. G., et al. Cigarette smoke-related oxidants and the development of sub-RPE deposits in an experimental animal model of dry AMD. Investigative ophthalmology & visual science 47, 729-737 (2006).
Uno, K., Bhutto, I. A., McLeod, D. S., Merges, C. & Lutty, G. A. Impaired expression of thrombospondin-1 in cycs with age related macular degeneration. Br J Ophthalmol 90, 48-54 (2006).
Wang, Z., Paik, D. C., Del Priore, L. V., Burch, R. L. & Gaillard, E. R. Nitrite-modified extracellular matrix proteins deleteriously affect retinal pigment epithelial cell function and viability: a comparison study with nonenzymatic glycation mechanisms. Current eye research 30, 691-702 (2005).
Gullapalli, V. K., Sugino, I. K., Van Patten, Y., Shah, S. & Zarbin, M. A. Retinal pigment epithelium resurfacing of aged submacular human Bruch's membrane. Transactions of the American Ophthalmological Society 102, 123-137; discussion 137-128 (2004).
Gullapalli, V. K., Sugino, I. K., Van Patten, Y., Shah, S. & Zarbin, M. A. Impaired RPE survival on aged submacular human Bruch's membrane. Exp Eye Res 80, 235-248 (2005).
Itaya, H., Gullapalli, V., Sugino, I. K., Tamai, M. & Zarbin, M. A. Iris pigment epithelium attachment to aged submacular human Bruch's membrane. Investigative ophthalmology & visual science 45, 4520-4528 (2004).
Tezel, T. H., Del Priore, L. V. & Kaplan, H. J. Reengineering of aged Bruch's membrane to enhance retinal pigment epithelium repopulation. Investigative ophthalmology & visual science 45, 3337-3348 (2004).
Roth, F., Bindewald, A. & Holz, F. G. Key pathophysiologic pathways in age-related macular disease. Graefes Arch Clin Exp Ophthalmol 242, 710-716 (2004).
Zarbin, M. A. Current concepts in the pathogenesis of age-related macular degeneration. Archives of ophthalmology 122, 598-614 (2004).
Tian, J., Ishibashi, K. & Handa, J. T. The expression of native and cultured RPE grown on different matrices. Physiologicalgenomics 17, 170-182 (2004).
Koenekoop, R. K. Choroideremia is Caused by a Defective Phagocytosis by the RPE of Photoreceptor Disc Membranes, not by an Intrinsic Photoreceptor Defect. Ophthalmic genetics 28, 185-186 (2007).
Chang, Y. & Finnemann, S. C. Tetraspanin CD81 is required for the {alpha}vbeta5-integrin-dependent particle-binding step ofRPE phagocytosis. Journal of cell science 120, 3053-3063 (2007).
Mukherjee, P. K., et al. Photoreceptor outer segment phagocytosis attenuates oxidative stress-induced apoptosis with concomitant neuroprotectin D1 synthesis. Proceedings of the National Academy of Sciences of the United States of America 104, 13158-13163 (2007).
Schutt, F., Volcker, H. E. & Dithmar, S. [N-acetylcystcine improves lysosomal function and enhances the degradation of photoreceptor outer segments in cultured RPE cells]. Klinische Monatsblatter fur Augenheilkunde 224, 580-584 (2007).
Martinez-Navarrete, G. C., Martin-Nieto, J., Esteve-Rudd, J., Angulo, A. & Cuenca, N. Alpha synuclein gene expression profile in the retina of vertebrates. Molecular vision 13, 949-961 (2007).
Nandrot, E. F., et al. Essential role for MFG-E8 as ligand for alphavbeta5 integrin in diurnal retinal phagocytosis. Proceedings of the National Academy of Sciences of the United States of America 104, 12005-12010 (2007).
Warburton, S., et al. Proteomic and phototoxic characterization of melanolipofuscin: correlation to disease and model for its origin. Molecular vision 13, 318-329 (2007).
Kolko, M., et al. Identification of intracellular phospholipases A2 in the human eye: involvement in phagocytosis of photoreceptor outer segments. Investigative ophthalmology & visual science 48, 1401-1409 (2007).
Kaemmerer, E., Schutt, F., Krohne, T. U., Holz, F. G. & Kopitz, J. Effects of lipid peroxidation-related protein modifications on RPE lysosomal functions and POS phagocytosis. Investigative ophthalmology & visual science 48, 1342-1347 (2007).
Lee, C. J., Fishman, H. A. & Bent, S. F. Spatial cues for the enhancement of retinal pigment epithelial cell function in potential transplants. Biomaterials 28, 2192-2201 (2007).
Finnemann, S. C. & Nandrot, E. F. MerTK activation during RPE phagocytosis in vivo requires alphaVbeta5 integrin. Advances in experimental medicine and biology 572, 499-503 (2006).
Takahashi et al. (2007) Nat Protoc. 2(12): 3081-9.
Maherali et al. (2007) Cell Stem Cell 1: 55-70.
Hanna et al. (2007) Science, 6 Dec. 2007, 10.1126/science.1152092 (see also www.sciencexpress.org).
Meissner et al. (2007) Nature Biotechnology 25: 1177-1181.
Mikkelsen et al. (2007) Nature, Vol 448, 2 Aug. 2007, doi:10.1038/nature06008.
Wemig et al. (2007) Nature, Vol 448, 19 Jul. 2007, doi:10.1038/nature05944.
Yu et al. (2007) Science, 20 Nov. 2007, 10.1126/science.1151526 (see also www.sciencexpress.org).
Vogel and Holden (2007) Science 318: 1224-1225.
Takahashi et al. (2007) Cell 131: 861-872.
Li et al. (2005) Reproduction Research 130: 53-59.

All publications, patents and patent applications are herein incorporated by reference in their entirety to the same extent as if each individual publication, patent or patent application was specifically and individually indicated to be incorporated by reference in its entirety.

EQUIVALENTS

Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments of the invention described herein. Such equivalents are intended to be encompassed by the following claims.

Claims

1-134. (canceled)

135. A pharmaceutical preparation comprising

human RPE cells derived in vitro from human pluripotent stem cells, wherein at least 95% of cells in the preparation are human RPE cells that express three or more of the following markers: RPE-65, Bestrophin, PEDF, CRALBP, Otx2, and Mit-F.

136. The pharmaceutical preparation of claim 135, formulated for administration to a subretinal space of a human eye.

137. The pharmaceutical preparation of claim 135, formulated as a suspension, matrix, or substrate.

138. The pharmaceutical preparation of claim 135, wherein the pharmaceutical preparation comprises at least 10⁴human RPE cells, or at least 10⁵human RPE cells, or at least 10⁶human RPE cells.

139. The pharmaceutical preparation of claim 135, wherein the human RPE cells are derived in vitro from human embryonic stem cells.

140. The pharmaceutical preparation of claim 135, wherein the human RPE cells are derived in vitro from human induced pluripotent stem cells.

141. The pharmaceutical preparation of claim 135, wherein at least 95% of the cells in the preparation are human RPE cells that express 4, 5 or 6 of the markers.

142. The pharmaceutical preparation of claim 135, wherein 99% of the cells in the preparation are human RPE cells that express three or more of the markers.

143. A method of treating a subject having a condition characterized by retinal degeneration, comprising

administering to a subject in need thereof an effective amount of a preparation of human RPE cells, wherein the human RPE cells are derived in vitro from human pluripotent stem cells, and wherein at least 95% of the cells in the preparation are human RPE cells that express three or more of the following markers: RPE-65, Bestrophin, PEDF, CRALBP, Otx2, and Mit-F.

144. The method of claim 143, wherein the condition characterized by retinal degeneration is selected from the group consisting of: Stargardt's macular dystrophy, age related macular degeneration, and retinitis pigmentosa, and optionally wherein the preparation is

(a) formulated as a suspension, matrix, or substrate, and/or

(b) administered by injection into a subretinal space of an eye of the subject.

145. The method of claim 143, wherein the effective amount of the preparation comprises about 10⁴to about 10⁶human RPE cells.

146. The method of claim 143, wherein the human RPE cells are derived in vitro from human embryonic stem cells.

147. The method of claim 143, wherein the human RPE cells are derived in vitro from human induced pluripotent stem cells.

148. The method of claim 143, wherein at least 95% of the cells in the preparation are human RPE cells that express 4, 5 or 6 of the markers.

149. The method of claim 143, wherein 99% of the cells in the preparation are human RPE cells that express three or more of the markers.

150. The method of claim 143, wherein treatment is determined by measuring electroretinogram responses, optomotor acuity threshold, or luminance threshold in the subject.

151. The method of claim 143, wherein the retinal degeneration is associated with photoreceptor loss.

152. The method of claim 143, wherein the human subject maintains photoreceptor thickness following administration of the preparation of human RPE cells.

153. The method of claim 152, wherein the photoreceptor thickness is about 4-5 cells thick.

154. The method of claim 143, wherein the subject has viable endogenous host RPE cells prior to administration of the preparation of human RPE cells.