US20090298787A1 - Dsrna as Insect Control Agent - Google Patents
Dsrna as Insect Control Agent Download PDFInfo
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- US20090298787A1 US20090298787A1 US12/087,536 US8753607A US2009298787A1 US 20090298787 A1 US20090298787 A1 US 20090298787A1 US 8753607 A US8753607 A US 8753607A US 2009298787 A1 US2009298787 A1 US 2009298787A1
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- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
- C12N15/8261—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
- C12N15/8271—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
- C12N15/8279—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance
- C12N15/8286—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance for insect resistance
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- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01N—PRESERVATION OF BODIES OF HUMANS OR ANIMALS OR PLANTS OR PARTS THEREOF; BIOCIDES, e.g. AS DISINFECTANTS, AS PESTICIDES OR AS HERBICIDES; PEST REPELLANTS OR ATTRACTANTS; PLANT GROWTH REGULATORS
- A01N57/00—Biocides, pest repellants or attractants, or plant growth regulators containing organic phosphorus compounds
- A01N57/10—Biocides, pest repellants or attractants, or plant growth regulators containing organic phosphorus compounds having phosphorus-to-oxygen bonds or phosphorus-to-sulfur bonds
- A01N57/16—Biocides, pest repellants or attractants, or plant growth regulators containing organic phosphorus compounds having phosphorus-to-oxygen bonds or phosphorus-to-sulfur bonds containing heterocyclic radicals
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- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01N—PRESERVATION OF BODIES OF HUMANS OR ANIMALS OR PLANTS OR PARTS THEREOF; BIOCIDES, e.g. AS DISINFECTANTS, AS PESTICIDES OR AS HERBICIDES; PEST REPELLANTS OR ATTRACTANTS; PLANT GROWTH REGULATORS
- A01N61/00—Biocides, pest repellants or attractants, or plant growth regulators containing substances of unknown or undetermined composition, e.g. substances characterised only by the mode of action
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- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/43504—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from invertebrates
- C07K14/43513—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from invertebrates from arachnidae
- C07K14/43527—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from invertebrates from arachnidae from ticks
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
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- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/43504—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from invertebrates
- C07K14/43536—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from invertebrates from worms
- C07K14/4354—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from invertebrates from worms from nematodes
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- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
- C12N15/8261—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
- C12N15/8271—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
- C12N15/8279—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance
- C12N15/8282—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance for fungal resistance
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- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/82—Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
- C12N15/8241—Phenotypically and genetically modified plants via recombinant DNA technology
- C12N15/8261—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
- C12N15/8271—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
- C12N15/8279—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance
- C12N15/8285—Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance for nematode resistance
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- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/10—Type of nucleic acid
- C12N2310/14—Type of nucleic acid interfering N.A.
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- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
- Y02A40/00—Adaptation technologies in agriculture, forestry, livestock or agroalimentary production
- Y02A40/10—Adaptation technologies in agriculture, forestry, livestock or agroalimentary production in agriculture
- Y02A40/146—Genetically Modified [GMO] plants, e.g. transgenic plants
Definitions
- the present invention relates to the field of double-stranded RNA (dsRNA)-mediated gene silencing in insect species. More particularly, the present invention relates to genetic constructs designed for the expression of dsRNA corresponding to novel target genes. These constructs are particularly useful in RNAi-mediated plant pest control.
- the invention further relates to methods for controlling insects, methods for preventing insect infestation and methods for down-regulating gene expression in insects using RNAi.
- the invention also relates to transgenic plants resistant to insect infestation.
- Chemical pesticides have been very effective in eradicating pest infestation.
- chemical pesticidal agents Not only are they potentially detrimental to the environment, but they are not selective and are harmful to various crops and non-target fauna.
- Chemical pesticides persist in the environment and generally are slow to be metabolized, if at all. They accumulate in the food chain, and particularly in the higher predator species where they can act as mutagens and/or carcinogens to cause irreversible and deleterious genetic modifications.
- Control of insect pests on agronomically important crops is important, particularly insect pests which damage plants belonging to the Solanaceae family, especially potato ( Solanum tuberosum ), but also tomato ( Solanum lycopersicum ), eggplant ( Solanum melongena ), capsicums ( Solanum capsicum ), and nightshade (for example, Solanum aculeastrum, S. bulbocastanum, S. cardiophyllum, S. douglasii, S. dulcamara, S. lanceolatum, S. robustum , and S. triquetrum ), particularly the control of coleopteran pests.
- potato Solanum tuberosum
- tomato Solanum lycopersicum
- eggplant Solanum melongena
- capsicums Solanum capsicum
- nightshade for example, Solanum aculeastrum, S. bulbocastanum, S. cardiophyllum, S. douglasii, S. dulcamara,
- neem-based insecticides have azadirachtin as the primary active ingredient. These insecticides are applicable to a broad spectrum of insects. They act as insect growth regulator; azadirachtin prevents insects from molting by inhibiting production of an insect hormone, ecdysone.
- Bt toxin protein is effective in controlling Colorado potato beetle larvae either as formulations sprayed onto the foliage or expressed in the leaves of potatoes.
- RNAi RNA interference
- RNA interference or “RNAi” is a process of sequence-specific down-regulation of gene expression (also referred to as “gene silencing” or “RNA-mediated gene silencing”) initiated by double-stranded RNA (dsRNA) that is complementary in sequence to a region of the target gene to be down-regulated (Fire, A. Trends Genet. Vol. 15, 358-363, 1999; Sharp, P. A. Genes Dev. Vol. 15, 485-490, 2001).
- dsRNA double-stranded RNA
- RNA interference RNA interference
- DsRNA gene silencing finds application in many different areas, such as for example dsRNA mediated gene silencing in clinical applications (WO2004/001013) and in plants.
- dsRNA constructs useful for gene silencing have also been designed to be cleaved and to be processed into short interfering RNAs (siRNAs).
- RNAi has also been proposed as a means of protecting plants against plant parasitic nematodes, i.e. by expressing in the plant (e.g. in the entire plant, or in a part, tissue or cell of a plant) one or more nucleotide sequences that form a dsRNA fragment that corresponds to a target gene in the plant parasitic nematode that is essential for its growth, reproduction and/or survival.
- a target gene in the plant parasitic nematode that is essential for its growth, reproduction and/or survival.
- RNAi Down-regulate gene expression in insects. Since the filing and publication of the WO 00/01846 and WO 99/32619 applications, only few other applications have been published that relate to the use of RNAi to protect plants against insects. These include the International Applications WO 01/37654 (DNA Plant Technologies), WO 2005/019408 (Bar Ilan University), WO 2005/049841 (CSIRO, Bayer Cropscience), WO 05/047300 (University of Utah Research foundation), and the US application 2003/00150017 (Mesa et al.).
- the present invention provides target genes and constructs useful in the RNAi-mediated insect pest control, especially the control of insect plant pathogens.
- the present invention also provides methods for controlling insect pest infestation by repressing, delaying, or otherwise reducing target gene expression within a particular insect pest.
- the present invention describes a novel non-compound, non-protein based approach for the control of insect crop pests.
- the active ingredient is a nucleic acid, a double-stranded RNA (dsRNA), which can be used as an insecticidal formulation.
- dsRNA double-stranded RNA
- the dsRNA can be expressed constitutively in the host plant, plant part, plant cell or seed to protect the plant against chewing insects especially coleopterans such as beetles.
- the sequence of the dsRNA corresponds to part or whole of an essential insect gene and causes downregulation of the insect target via RNA interference (RNAi).
- RNAi RNA interference
- the dsRNA prevents expression of the target insect protein and hence causes death, growth arrest or sterility of the insect.
- the methods of the invention can find practical application in any area of technology where it is desirable to inhibit viability, growth, development or reproduction of the insect, or to decrease pathogenicity or infectivity of the insect.
- the methods of the invention further find practical application where it is desirable to specifically down-regulate expression of one or more target genes in an insect.
- Particularly useful practical applications include, but are not limited to, protecting plants against insect pest infestation.
- the invention relates to a method for controlling insect growth on a cell or an organism, or for preventing insect infestation of a cell or an organism susceptible to insect infection, comprising contacting insects with a double-stranded RNA, wherein the double-stranded RNA comprises annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of the nucleotide sequence of an insect target gene, whereby the double-stranded RNA is taken up by the insect and thereby controls growth or prevents infestation.
- the present invention therefore provides isolated novel nucleotide sequences of insect target genes, said isolated nucleotide sequences comprising at least one nucleic acid sequence selected from the group comprising:
- sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 8
- sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 8
- nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 49 to 158, 275 to 472, 533 to 575, 621 to 767, 813 to 862, 908 to 1040, 1161 to 1571, 1730 to 2039, 2120 to 2338, 2384 to 2460, or a complement thereof,
- nucleic acid sequences being useful for preparing the double stranded RNAs of the invention for controlling insect growth.
- Controlling pests means killing pests, or preventing pests to develop, or to grow or preventing pests to infect or infest. Controlling pests as used herein also encompasses controlling pest progeny (development of eggs). Controlling pests as used herein also encompasses inhibiting viability, growth, development or reproduction of the pest, or to decrease pathogenicity or infectivity of the pest.
- the compounds and/or compositions described herein may be used to keep an organism healthy and may be used curatively, preventively or systematically to control pests or to avoid pest growth or development or infection or infestation.
- Controlling insects as used herein thus also encompasses controlling insect progeny (such as development of eggs). Controlling insects as used herein also encompasses inhibiting viability, growth, development or reproduction of the insect, or decreasing pathogenicity or infectivity of the insect.
- controlling insects may inhibit a biological activity in a insect, resulting in one or more of the following attributes: reduction in feeding by the insect, reduction in viability of the insect, death of the insect, inhibition of differentiation and development of the insect, absence of or reduced capacity for sexual reproduction by the insect, muscle formation, juvenile hormone formation, juvenile hormone regulation, ion regulation and transport, maintenance of cell membrane potential, amino acid biosynthesis, amino acid degradation, sperm formation, pheromone synthesis, pheromone sensing, antennae formation, wing formation, leg formation, development and differentiation, egg formation, larval maturation, digestive enzyme formation, haemolymph synthesis, haemolymph maintenance, neurotransmission, cell division, energy metabolism, respiration, apoptosis, and any component of eukaryotic cells cytoskeletal structure, such as, for example, actins and tubulins.
- the compounds and/or compositions described herein may be used to keep an organism healthy and may be used curatively, preventively or systematically to control a insect or to avoid insect growth or development or infection or infestation.
- the invention may allow previously susceptible organisms to develop resistance against infestation by the insect organism.
- nucleotide sequence is fully complementary to the nucleotide sequence of the target over more than two nucleotides, for instance over at least 15, 16, 17, 18, 19, 20, 21, 22, 23, 24 or more contiguous nucleotides.
- the invention relates to a method for down-regulating expression of a target gene in an insect, comprising contacting said insect with a double-stranded RNA, wherein the double-stranded RNA comprises annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of the nucleotide sequence of the insect target gene to be down-regulated, whereby the double-stranded RNA is taken up into the insect and thereby down-regulates expression of the insect target gene.
- RNA molecule or host cell meaning “at least one” RNA molecule or host cell. This is also detailed further below.
- the methods of the invention rely on uptake by the insect of double-stranded RNA present outside of the insect (e.g. by feeding) and does not require expression of double-stranded RNA within cells of the insect.
- the present invention also encompasses methods as described above wherein the insect is contacted with a composition comprising the double-stranded RNA.
- the invention further provides a method for down-regulating expression of at least one target gene in a target organism (which is capable of ingesting a plant, plant part, plant cell or seeds) comprising feeding a plant, plant part, plant cell or seed to the target organism which plant, plant part, plant cell or seed expresses double-stranded RNA.
- the invention provides a method for down-regulating expression of at least one target gene in a target organism (which is capable of ingesting a host cell, or extracts thereof) comprising feeding a hostplant, plant part, plant cell or seed to the target organism which hostplant, plant part, plant cellcell or seed expresses a double-stranded RNA molecule comprising a nucleotide sequence complementary to or representing the RNA equivalent of at least part of the nucleotide sequence of the at least one target gene, whereby the ingestion of the host cell, host plant, plant part, plant cell or seed by the target organism causes and/or leads to down-regulation of expression of the at least one target gene.
- the invention provides for use of a plant, plant part, plant cell or seed as defined herein for down regulation of expression of an insect target gene.
- the invention provides for use of a host cell as defined herein and/or an RNA molecule comprising a nucleotide sequence that is the RNA complement of or that represents the RNA equivalent of at least part of the nucleotide sequence of a target gene from a target organism, as produced by transcription of a nucleic acid molecule in a plant, plant part, plant cell or seed, for instance in the manufacture of a commodity product, for down regulation of expression of a target gene.
- Suitable target genes and target organisms in respect of the invention are discussed below in further detail.
- the methods of the invention rely on a GMO approach wherein the double-stranded RNA is expressed by a cell or an organism infested with or susceptible to infestation by insects.
- said cell is a plant cell or said organism is a plant.
- the present invention thus also relates to a method for producing a plant resistant to a plant pathogenic insect, comprising:
- transforming a plant cell with a recombinant construct comprising at least one regulatory sequence operably linked to a sequence complementary to at least part of (a) a nucleotide sequence of a target insect gene selected from the group consisting of:
- the insect can be any insect, meaning any organism belonging to the Kingdom Animals, more specific to the Phylum Arthropoda, and to the Class Insecta or the Class Arachnida.
- the methods of the invention are applicable to all insects and that are susceptible to gene silencing by RNA interference and that are capable of internalising double-stranded RNA from their immediate environment.
- the invention is also applicable to the insect at any stage in its development. Because insects have a non-living exoskeleton, they cannot grow at a uniform rate and rather grow in stages by periodically shedding their exoskeleton. This process is referred to as moulting or ecdysis. The stages between moults are referred to as “instars” and these stages may be targeted according to the invention.
- insect eggs or live young may also be targeted according to the present invention. All stages in the developmental cycle, which includes metamorphosis in the pterygotes, may be targeted according to the present invention. Thus, individual stages such as larvae, pupae, nymph etc stages of development may all be targeted.
- the insect may belong to the following orders: Acari, Araneae, Anoplura, Coleoptera, Collembola, Dermaptera, Dictyoptera, Diplura, Diptera, Embioptera, Ephemeroptera, Grylloblatodea, Hemiptera, Homoptera, Hymenoptera, Isoptera, Lepidoptera, Mallophaga, Mecoptera, Neuroptera, Odonata, Orthoptera, Phasmida, Plecoptera, Protura, Psocoptera, Siphonaptera, Siphunculata, Thysanura, Strepsiptera, Thysanoptera, Trichoptera , and Zoraptera.
- the insect is chosen from the group consisting of an insect which is a plant pest, such as but not limited to Nilaparvata spp. (e.g. N. lugens (brown planthopper)); Laodelphax spp. (e.g. L. striatellus (small brown planthopper)); Nephotettix spp. (e.g. N. virescens or N. cincticeps (green leafhopper), or N. nigropictus (rice leafhopper)); Sogatella spp. (e.g. S. furcifera (white-backed planthopper)); Blissus spp. (e.g. B.
- Nilaparvata spp. e.g. N. lugens (brown planthopper)
- Laodelphax spp. e.g. L. striatellus (small brown planthopper)
- Nephotettix spp. e.g. N. virescens
- leucopterus leucopterus (chinch bug)); Scotinophora spp. (e.g. S. vermidulate (rice blackbug)); Acrostemum spp. (e.g. A. hilare (green stink bug)); Pamara spp. (e.g. P. guttata (rice skipper)); Chilo spp. (e.g. C. suppressalis (rice striped stem borer), C. auricilius (gold-fringed stem borer), or C. polychrysus (dark-headed stem borer)); Chilotraea spp. (e.g. C. polychrysa (rice stalk borer)); Sesamia spp. (e.g.
- S. inferens pink rice borer
- Tryporyza spp. e.g. T. innotata (white rice borer), or T. incertulas (yellow rice borer)
- Cnaphalocrocis spp. e.g. C. medinalis (rice leafroller)
- Agromyza spp. e.g. A. oryzae (leafminer), or A. parvicomis (corn blot leafminer)
- Diatraea spp. e.g. D. saccharalis (sugarcane borer), or D. grandiosella (southwestern corn borer)
- Narnaga spp. e.g. N.
- aenescens green rice caterpillar
- Xanthodes spp. e.g. X. transverse (green caterpillar)
- Spodoptera spp. e.g. S. frugiperda (fall armyworm), S. exigua (beet armyworm), S. littoralis (climbing cutworm) or S. praefica (western yellowstriped armyworm)
- Mythimna spp. e.g. Mythmna ( Pseudaletia ) seperata (armyworm)
- Helicoverpa spp. e.g. H. zea (corn earworm)
- Colaspis spp. e.g. C.
- Lissorhoptrus spp. e.g. L. oryzophilus (rice water weevil)); Echinocnemus spp. (e.g. E. squamos (rice plant weevil)); Diclodispa spp. (e.g. D. armigera (rice hispa)); Oulema spp. (e.g. O. oryzae (leaf beetle); Sitophilus spp. (e.g. S. oryzae (rice weevil)); Pachydiplosis spp. (e.g. P. oryzae (rice gall midge)); Hydrellia spp. (e.g.
- H. griseola small rice leafminer
- H. sasakii rice stem maggot
- Chlorops spp. e.g. C. oryzae (stem maggot)
- Diabrotica spp. e.g. D. virgifera virgifera (western corn rootworm), D. barberi (northern corn rootworm), D. undecimpunctata howardi (southern corn robtworm), D. virgifera zeae (Mexican corn rootworm); D. balteata (banded cucumber beetle)); Ostrinia spp. (e.g. O.
- nubilalis European corn borer
- Agrotis spp. e.g. A. ipsilon (black cutworm)
- Elasmopalpus spp. e.g. E. lignosellus (lesser cornstalk borer)
- Melanotus spp. wireworms
- Cyclocephala spp. e.g. C. borealis (northern masked chafer), or C. immaculata (southern masked chafer)
- Popillia spp. e.g. P. japonica (Japanese beetle)
- Chaetocnema spp. e.g. C.
- pulicaria corn flea beetle
- Sphenophorus spp. e.g. S. maidis (maize billbug)
- Rhopalosiphum spp. e.g. R. maidis (corn leaf aphid)
- Anuraphis spp. e.g. A. maidiradicis (corn root aphid)
- Melanoplus spp. e.g. M. femurubrum (redlegged grasshopper) M. differentialis (differential grasshopper) or M. sanguinipes (migratory grasshopper)
- Hylemya spp. e.g. H. platura (seedcorn maggot)
- Solenopsis spp. e.g. S. milesta (thief ant)); or spp. (e.g. T. urticae (twospotted spider mite), T. cinnabarinus (carmine spider mite); Helicoverpa spp. (e.g. H. zea (cotton bollworm), or H. armigera (American bollworm)); Pectinophora spp. (e.g. P. gossypiella (pink bollworm)); Earias spp. (e.g. E. vittella (spotted bollworm)); Heliothis spp. (e.g.
- H. virescens tobacco budworm
- Anthonomus spp. e.g. A. grandis (boll weevil)
- Pseudatomoscelis spp. e.g. P. seriatus (cotton fleahopper)
- Trialeurodes spp. e.g. T. abutiloneus (banded-winged whitefly) T. vaporariorum (greenhouse whitefly)
- Bemisia spp. e.g. B. argentifolii (silverleaf whitefly)
- Aphis spp. e.g. A. gossypii (cotton aphid)
- Euschistus spp. e.g. E. conspersus (consperse stink bug)
- Chlorochroa spp. e.g. C. sayi (Say stinkbug)
- Nezara spp. e.g. N. viridula (southern green stinkbug)
- Thrips spp. e.g. T. tabaci (onion thrips)
- Frankliniella spp. e.g. F. fusca (tobacco thrips), or F. occidentalis (western flower thrips)
- Lema spp. e.g. L. trilineata (three-lined potato beetle)
- Epitrix spp. e.g. E. cucumeris (potato flea beetle), E. hirtipennis (flea beetle), or E. tuberis (tuber flea beetle)
- Epicauta spp. e.g. E. vittata (striped blister beetle)
- Phaedon spp. e.g.
- P. cochleariae (mustard leaf beetle)); Epilachna spp. (e.g. E. varivetis (mexican bean beetle)); Acheta spp. (e.g. A. domesticus (house cricket)); Empoasca spp. (e.g. E. fabae (potato leafhopper)); Myzus spp. (e.g. M. persicae (green peach aphid)); Paratrioza spp. (e.g. P. cockerelli (psyllid)); Conoderus spp. (e.g. C. falli (southern potato wireworm), or C.
- epilachna spp. e.g. E. varivetis (mexican bean beetle)
- Acheta spp. e.g. A. domesticus (house cricket)
- Empoasca spp. e.g. E. fabae (potato leafhopper)
- vespertinus tobacco wireworm
- Phthorimaea spp. e.g. P. operculella (potato tuberworm)
- Macrosiphum spp. e.g. M. euphorbiae (potato aphid)
- Thyanta spp. e.g. T. pallidovirens (redshouldered stinkbug)
- Phthorimaea spp. e.g. P. operculella (potato tuberworm)
- Helicoverpa spp. e.g. H. zea (tomato fruitworm); Keiferia spp. (e.g. K. lycopersicella (tomato pinworm)); Limonius spp.
- Manworms Manduca spp. (e.g. M. sexta (tobacco hornworm), or M. quinquemaculata (tomato hornworm)); Liriomyza spp. (e.g. L. sativae, L. trifolli or L. huidobrensis (leafminer)); Drosophilla spp. (e.g. D. melanogaster, D. yakuba, D. pseudoobscura or D. simulans ); Carabus spp. (e.g. C. granulatus ); Chironomus spp. (e.g. C. tentanus ); Ctenocephalides spp. (e.g.
- C. felis (cat flea)); Diaprepes spp. (e.g. D. abbreviatus (root weevil)); Ips spp. (e.g. I. pini (pine engraver)); Tribolium spp. (e.g. T. castaneum (red floor beetle)); Glossina spp. (e.g. G. morsitans (tsetse fly)); Anopheles spp. (e.g. A. gambiae (malaria mosquito)); Helicoverpa spp. (e.g. H. armigera (African Bollworm)); Acyrthosiphon spp. (e.g. A.
- pisum pea aphid
- Apis spp. e.g. A. melifera (honey bee)
- Homalodisca spp. e.g. H. coagulate (glassy-winged sharpshooter)
- Aedes spp. e.g. Ae. aegypti (yellow fever mosquito)
- Bombyx spp. e.g. B. mori (silkworm)
- Locusta spp. e.g. L. migratoria (migratory locust)
- Boophilus spp. e.g. B. microplus (cattle tick)
- Acanthoscurria spp. e.g. A.
- gomesiana red-haired chololate bird eater
- Diploptera spp. e.g. D. punctata (pacific beetle cockroach)
- Heliconius spp. e.g. H. erato (red passion flower butterfly) or H. melpomene (postman butterfly)
- Curculio spp. e.g. C. glandium (acorn weevil)
- Plutella spp. e.g. P. xylostella (diamondback moth)
- Amblyomma spp. e.g. A. variegatum (cattle tick)
- Anteraea spp. e.g. A. yamamai (silkmoth)
- Armigeres spp. e.g. A. subalbatus );
- Preferred plant pathogenic insects according to the invention are plant pest are selected from the group consisting of Leptinotarsa spp. (e.g. L. decemlineata (Colorado potato beetle), L. juncta (false potato beetle), or L. texana (Texan false potato beetle)); Nilaparvata spp. (e.g. N. lugens (brown planthopper)); Laodelphax spp. (e.g. L. striatellus (small brown planthopper)); Nephotettix spp. (e.g. N. virescens or N. cincticeps (green leafhopper), or N.
- Leptinotarsa spp. e.g. L. decemlineata (Colorado potato beetle), L. juncta (false potato beetle), or L. texana (Texan false potato beet
- Sogatella spp. e.g. S. furcifera (white-backed planthopper)
- Chilo spp. e.g. C. suppressais (rice striped stem borer), C. auricilius (gold-fringed stem borer), or C. polychrysus (dark-headed stem borer)
- Sesamia spp. e.g. S. inferens (pink rice borer)
- Tryporyza spp. e.g. T. innotata (white rice borer), or T. incertulas (yellow rice borer)
- Anthonomus spp. e.g. A.
- Phaedon spp. e.g. P. cochleariae (mustard leaf beetle)); Epilachna spp. (e.g. E. varivetis (mexican bean beetle)); Tribolium spp. (e.g. T. castaneum (red floor beetle)); Diabrotica spp. (e.g. D. virgifera virgifera (western corn rootworm), D. barberi (northern corn rootworm), D. undecimpunctata howardi (southern corn rootworm), D.
- virgifera zeae (Mexican corn rootworm); Ostrinia spp. (e.g. O. nubilalis (European corn borer)); Anaphothrips spp. (e.g. A. obscrurus (grass thrips)); Pectinophora spp. (e.g. P. gossypiella (pink bollworm)); Heliothis spp. (e.g. H. virescens (tobacco budworm)); Trialeurodes spp. (e.g. T. abutiloneus (banded-winged whitefly) T. vaporariorum (greenhouse whitefly)); Bemisia spp. (e.g.
- B. argentifolii (silverleaf whitefly)); Aphis spp. (e.g. A. gossypii (cotton aphid)); Lygus spp. (e.g. L. lineolaris (tarnished plant bug) or L. hesperus (western tarnished plant bug)); Euschistus spp. (e.g. E. conspersus (consperse stink bug)); Chlorochroa spp. (e.g. C. sayi (Say stinkbug)); Nezara spp. (e.g. N. viridula (southern green stinkbug)); Thrips spp. (e.g. T.
- Aphis spp. e.g. A. gossypii (cotton aphid)
- Lygus spp. e.g. L. lineolaris (tarnished plant bug) or L. hesperus (western tarnished
- Frankliniella spp. e.g. F. fusca (tobacco thrips), or F. occidentalis (western flower thrips)
- Acheta spp. e.g. A. domesticus (house cricket)
- Myzus spp. e.g. M. persicae (green peach aphid)
- Macrosiphum spp. e.g. M. euphorbiae (potato aphid)
- Blissus spp. e.g. B. leucopterus leucopterus (chinch bug)
- Acrostemum spp. e.g. A.
- Chilotraea spp. e.g. C. polychrysa (rice stalk borer)
- Lissorhoptrus spp. e.g. L. oryzophilus (rice water weevil)
- Rhopalosiphum spp. e.g. R. maidis (corn leaf aphid)
- Anuraphis spp. e.g. A. maidiradicis (corn root aphid)).
- the methods of the invention are applicable for Leptinotarsa species.
- Leptinotarsa belong to the family of Chrysomelidae or leaf beatles.
- Chrysomelid beetles such as Flea Beetles and Corn Rootworms and Curculionids such as Alfalfa Weevils are particularly important pests.
- Flea Beetles include a large number of small leaf feeding beetles that feed on the leaves of a number of grasses, cereals and herbs.
- Flea Beetles include a large number of genera (e.g., Attica, Apphthona, Argopistes, Disonycha, Epitrix, Longitarsus, Prodagricomela, Systena , and Phyllotreta ).
- the Flea Beetle, Phyllotreta cruciferae also known as the Rape Flea Beetle, is a particularly important pest.
- Corn rootworms include species found in the genus Diabrotica (e.g., D. undecimpunctata undecimpunctata, D. undecimpunctata howardii, D. longicornis, D. virgifera and D. balteata ).
- the Western Spotted Cucumber Beetle, D. undecimpunctata undecimpunctata is a pest of curcubits in the western U.S.
- Alfalfa weevils also known as clover weevils
- Hypera H. postica, H. brunneipennis, H. nigrirostris, H. punctata and H. meles
- the Egyptian alfalfa weevil, H. brunneipennis is an important pest of alfalfa in the western U.S.
- Leptinotarsa species There are more than 30 Leptinotarsa species.
- the present invention thus encompasses methods for controlling Leptinotarsa species, more specific methods for killing insects, or preventing Leptinotarsa insects to develop or to grow, or preventing insects to infect or infest.
- Specific Leptinotarsa species to control according to the invention include Colorado Potato Beetle ( Leptinotarsa decemlineata (Say) and False Potato Beetle ( Leptinotarsa juncta (Say).
- CPB is a (serious) pest on our domestic potato ( Solanum tuberosum ), other cultivated and wild tuber bearing and non-tuber bearing potato species (e.g. S. demissum, S. phureja a.o.) and other Solanaceous (nightshades) plant species including:
- FPB is primarily found on horse nettle, but also occurs on common nightshade, ground cherry, and husk tomato ( Physalis species).
- insects encompasses insects of all types and at all stages of development, including egg, larval or nymphal, pupal and adult stages.
- the present invention extends to methods as described herein, wherein the insect is Leptinotarsa decemlineata (Colorado potato beetle) and the plant is potato, eggplant, tomato, pepper, tobacco, ground cherry or rice, corn or cotton.
- the insect is Leptinotarsa decemlineata (Colorado potato beetle) and the plant is potato, eggplant, tomato, pepper, tobacco, ground cherry or rice, corn or cotton.
- the present invention extends to methods as described herein, wherein the insect is Phaedon cochleariae (mustard leaf beetle) and the plant is mustard, chinese cabbage, turnip greens, collard greens or bok choy.
- the present invention extends to methods as described herein, wherein the insect is Epilachna varivetis (Mexican bean beetle) and the plants are beans, field beans, garden beans, snap beans, lima beans, mung beans, string beans, black-eyed beans, velvet beans, soybeans, cowpeas, pigeon peas, clover or alfalfa.
- the insect is Epilachna varivetis (Mexican bean beetle) and the plants are beans, field beans, garden beans, snap beans, lima beans, mung beans, string beans, black-eyed beans, velvet beans, soybeans, cowpeas, pigeon peas, clover or alfalfa.
- the present invention extends to methods as described herein, wherein the insect is Anthonomus grandis (cotton boll weevil) and the plant is cotton.
- the present invention extends to methods as described herein, wherein the insect is Tribolium castaneum (red flour beetle) and the plant is in the form of stored grain products such as flour, cereals, meal, crackers, beans, spices, pasta, cake mix, dried pet food, dried flowers, chocolate, nuts, seeds, and even dried museum specimens.
- Tribolium castaneum red flour beetle
- the present invention extends to methods as described herein, wherein the insect is Myzus persicae (green peach aphid) and the plant is a tree such as Prunus , particularly peach, apricot and plum; a vegetable crop of the families Solanaceae, Chenopodiaceae, Compositae, Cruciferae, and Cucurbitaceae, including but not limited to, artichoke, asparagus, bean, beets, broccoli, Brussels sprouts, cabbage, carrot, cauliflower, cantaloupe, celery, corn, cucumber, fennel, kale, kohlrabi, turnip, eggplant, lettuce, mustard, okra, parsley, parsnip, pea, pepper, potato, radish, spinach, squash, tomato, turnip, watercress, and watermelon; a field crops such as, but not limited to, tobacco, sugar beet, and sunflower; a flower crop or other ornamental plant.
- the insect is Myzus persicae (green peach
- the present invention extends to methods as described herein, wherein the insect is Nilaparvata lugens and the plant is a rice plant.
- the present invention extends to methods as described herein, wherein the insect is Chilo suppressalis (rice striped stem borer) and the plant is a rice plant, bareley, sorghum, maize, wheat or a grass.
- the present invention extends to methods as described herein, wherein the insect is Plutella xylostella (Diamondback moth) and the plant is a Brassica species such as, but not limited to cabbage, chinese cabbage, Brussels sprouts, kale, rapeseed, broccoli, cauliflower, turnip, mustard or radish.
- the insect is Plutella xylostella (Diamondback moth) and the plant is a Brassica species such as, but not limited to cabbage, chinese cabbage, Brussels sprouts, kale, rapeseed, broccoli, cauliflower, turnip, mustard or radish.
- the present invention extends to methods as described herein, wherein the insect is Acheta domesticus (house cricket) and the plant is any plant as described herein or any organic matter.
- any organism which is susceptible to pest infestation is included.
- plants may benefit from the present invention by protection from infestation by plant pest organisms.
- the susceptible organism is a plant and the pest is a plant pathogenic insect.
- the insect is contacted with the RNA molecule by expressing the dsRNA molecule in a plant, plant part, plant cell or plant seed that is infested with or susceptible to infestation with the plant pathogenic pest.
- plant encompasses any plant material that it is desired to treat to prevent or reduce insect growth and/or insect infestation. This includes, inter alia, whole plants, seedlings, propagation or reproductive material such as seeds, cuttings, grafts, explants, etc. and also plant cell and tissue cultures.
- the plant material should express, or have the capability to express, the RNA molecule comprising at least one nucleotide sequence that is the RNA complement of or that represents the RNA equivalent of at least part of the nucleotide sequence of the sense strand of at least one target gene of the pest organism, such that the RNA molecule is taken up by a pest upon plant-pest interaction, said RNA molecule being capable of inhibiting the target gene or down-regulating expression of the target gene by RNA interference.
- the target gene may be any of the target genes herein described, for instance a target gene that is essential for the viability, growth, development or reproduction of the pest.
- the present invention relates to any gene of interest in the insect (which may be referred to herein as the “target gene”) that can be down-regulated.
- down-regulation of gene expression and “inhibition of gene expression” are used interchangeably and refer to a measurable or observable reduction in gene expression or a complete abolition of detectable gene expression, at the level of protein product and/or mRNA product from the target gene.
- the down-regulation does not substantially directly inhibit the expression of other genes of the insect.
- the down-regulation effect of the dsRNA on gene expression may be calculated as being at least 30%, 40%, 50%, 60%, preferably 70%, 80% or even more preferably 90% or 95% when compared with normal gene expression.
- RNA solution hybridization RNA PCR
- nuclease protection RNA PCR
- Northern hybridization RNA blotting
- enzyme-linked immunosorbent assay ELISA
- other immunoassays or fluorescence-activated cell analysis (FACS).
- the “target gene” may be essentially any gene that is desirable to be inhibited because it interferes with growth or pathogenicity or infectivity of the insect. For instance, if the method of the invention is to be used to prevent insect growth and/or infestation then it is preferred to select a target gene which is essential for viability, growth, development or reproduction of the insect, or any gene that is involved with pathogenicity or infectivity of the insect, such that specific inhibition of the target gene leads to a lethal phenotype or decreases or stops insect infestation.
- the target gene is such that when its expression is down-regulated or inhibited using the method of the invention, the insect is killed, or the reproduction or growth of the insect is stopped or retarded.
- This type of target genes is considered to be essential for the viability of the insect and is referred to as essential genes. Therefore, the present invention encompasses a method as described herein, wherein the target gene is an essential gene.
- the target gene is such that when it is down-regulated using the method of the invention, the infestation or infection by the insect, the damage caused by the insect, and/or the ability of the insect to infest or infect host organisms and/or cause such damage, is reduced.
- the terms “infest” and “infect” or “infestation” and “infection” are generally used interchangeably throughout.
- This type of target genes is considered to be involved in the pathogenicity or infectivity of the insect. Therefore, the present invention extends to methods as described herein, wherein the target gene is involved in the pathogenicity or infectivity of the insect.
- the advantage of choosing the latter type of target gene is that the insect is blocked to infect further plants or plant parts and is inhibited to form further generations.
- target genes are conserved genes or insect-specific genes.
- any suitable double-stranded RNA fragment capable of directing RNAi or RNA-mediated gene silencing or inhibition of an insect target gene may be used in the methods of the invention.
- a gene is selected that is essentially involved in the growth, development, and reproduction of a pest, (such as an insect).
- exemplary genes include but are not limited to the structural subunits of ribosomal proteins and a beta-coatamer gene, such as the CHD3 gene.
- Ribosomal proteins such as S4 (RpS4) and S9(RpS9) are structural constituents of the ribosome involved in protein biosynthesis and which are components of the cytosolic small ribosomal subunit
- the ribosomal proteins such as L9 and L19 are structural constituent of ribosome involved in protein biosynthesis which is localised to the ribosome.
- the beta coatamer gene in C.
- elegans encodes a protein which is a subunit of a multimeric complex that forms a membrane vesicle coat. Similar sequences have been found in diverse organisms such as Arabidopsis thaliana, Drosophila melanogaster , and Saccharomyces cerevisiae . Related sequences are found in diverse organisms such as Leptinotarsa decemlineata, Phaedon cochlearae, Epilachna varivestis, Anthonomus grandis, Trbolium castaneum, Myzus persicae, Nilaparvata lugens, Chilo suppressalis, Plutella xylostella and Acheta domesticus.
- target genes for use in the present invention may include, for example, those that play important roles in viability, growth, development, reproduction, and infectivity. These target genes include, for example, house keeping genes, transcription factors, and pest specific genes or lethal knockout mutations in Caenorhabditis or Drosophila .
- the target genes for use in the present invention may also be those that are from other organisms, e.g., from insects or arachnidae (e.g.
- Leptinotarsa spp. Phaedon spp., Epilachna spp., Anthonomus spp., Tribolium spp., Myzus spp., Nilaparvata spp., Chilo spp., Plutella spp., or Acheta spp.).
- Preferred target genes include those specified in Table 1A and orthologous genes from other target organisms, such as from other pest organisms.
- dsRNA is used to inhibit growth or to interfere with the pathogenicity or infectivity of the insect.
- the invention thus relates to isolated double-stranded RNA comprising annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of a target nucleotide sequence of a target gene of an insect.
- the target gene may be any of the target genes described herein, or a part thereof that exerts the same function.
- an isolated double-stranded RNA comprising annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of a nucleotide sequence of an insect target gene, wherein said target gene comprises a sequence which is selected from the group comprising:
- the growth inhibition can be quantified as being greater than about 5%, 10%, more preferably about 20%, 25%, 33%, 50%, 60%, 75%, 80%, most preferably about 90%, 95%, or about 99% as compared to a pest organism that has been treated with control dsRNA.
- an isolated double-stranded RNA wherein at least one of said annealed complementary strands comprises the RNA equivalent of at least one of the nucleotide sequences represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 8
- the double-stranded RNA does not share any significant homology with any host gene, or at least not with any essential gene of the host.
- the double-stranded RNA shows less than 30%, more preferably less that 20%, more preferably less than 10%, and even more preferably less than 5% nucleic acid sequence identity with any gene of the host cell. % sequence identity should be calculated across the full length of the double-stranded RNA region. If genomic sequence data is available for the host organism one may cross-check sequence identity with the double-stranded RNA using standard bioinformatics tools.
- dsRNA there is no sequence identity between the dsRNA and a host sequences over 21 contiguous nucleotides, meaning that in this context, it is preferred that 21 contiguous base pairs of the dsRNA do not occur in the genome of the host organism. In another embodiment, there is less than about 10% or less than about 12.5% sequence identity over 24 contiguous nucleotides of the dsRNA with any nucleotide sequence from a host species.
- the double-stranded RNA comprises annealed complementary strands, one of which has a nucleotide sequence which corresponds to a target nucleotide sequence of the target gene to be down-regulated.
- the other strand of the double-stranded RNA is able to base-pair with the first strand.
- target region or “target nucleotide sequence” of the target insect gene may be any suitable region or nucleotide sequence of the gene.
- the target region should comprise at least 17, at least 18 or at least 19 consecutive nucleotides of the target gene, more preferably at least 20 or at least 21 nucleotide and still more preferably at least 22, 23 or 24 nucleotides of the target gene.
- the double-stranded RNA will share 100% sequence identity with the target region of the insect target gene.
- 100% sequence identity over the whole length of the double stranded region is not essential for functional RNA inhibition.
- RNA sequences with insertions, deletions, and single point mutations relative to the target sequence have also been found to be effective for RNA inhibition.
- the terms “corresponding to” or “complementary to” are used herein interchangeable, and when these terms are used to refer to sequence correspondence between the double-stranded RNA and the target region of the target gene, they are to be interpreted accordingly, i.e. as not absolutely requiring 100% sequence identity.
- the % sequence identity between the double-stranded RNA and the target region will generally be at least 80% or 85% identical, preferably at least 90%, 95%, 96%, or more preferably at least 97%, 98% and still more preferably at least 99%.
- Two nucleic acid strands are “substantially complementary” when at least 85% of their bases pair.
- RNA equivalent substantially means that in the DNA sequence(s), the base “T” may be replaced by the corresponding base “U” normally present in ribonucleic acids.
- the dsRNA contains a sequence which corresponds to the target region of the target gene it is not absolutely essential for the whole of the dsRNA to correspond to the sequence of the target region.
- the dsRNA may contain short non-target regions flanking the target-specific sequence, provided that such sequences do not affect performance of the dsRNA in RNA inhibition to a material extent.
- the dsRNA may contain one or more substitute bases in order to optimise performance in RNAi. It will be apparent to the skilled reader how to vary each of the bases of the dsRNA in turn and test the activity of the resulting dsRNAs (e.g. in a suitable in vitro test system) in order to optimise the performance of a given dsRNA.
- the dsRNA may further contain DNA bases, non-natural bases or non-natural backbone linkages or modifications of the sugar-phosphate backbone, for example to enhance stability during storage or enhance resistance to degradation by nucleases.
- RNAs short interfering RNAs
- the minimum length of dsRNA preferably is at least about 80-100 bp in order to be efficiently taken up by certain pest organisms.
- invertebrates such as the free living nematode C. elegans or the plant parasitic nematode Meloidogyne incognita , these longer fragments are more effective in gene silencing, possibly due to a more efficient uptake of these long dsRNA by the invertebrate.
- RNA duplexes consisting of either 27-mer blunt or short hairpin (sh) RNAs with 29 bp stems and 2-nt 3′ overhangs are more potent inducers of RNA interference than conventional 21-mer siRNAs.
- molecules based upon the targets identified above and being either 27-mer blunt or short hairpin (sh) RNA's with 29-bp stems and 2-nt 3′overhangs are also included within the scope of the invention.
- the double-stranded RNA fragment (or region) will itself preferably be at least 17 bp in length, preferably 18 or 19 bp in length, more preferably at least 20 bp, more preferably at least 21 bp, or at least 22 bp, or at least 23 bp, or at least 24 bp, 25 bp, 26 bp or at least 27 bp in length.
- the expressions “double-stranded RNA fragment” or “double-stranded RNA region” refer to a small entity of the double-stranded RNA corresponding with (part of) the target gene.
- the double stranded RNA is preferably between about 17-1500 bp, even more preferably between about 80-1000 bp and most preferably between about 17-27 bp or between about 80-250 bp; such as double stranded RNA regions of about 17 bp, 18 bp, 19 bp, 20 bp, 21 bp, 22 bp, 23 bp, 24 bp, 25 bp, 27 bp, 50 bp, 80 bp, 100 bp, 150 bp, 200 bp, 250 bp, 300 bp, 350 bp, 400 bp, 450 bp, 500 bp, 550 bp, 600 bp, 650 bp, 700 bp, 900 bp, 100 bp, 1100 bp, 1200 bp, 1300 bp, 1400 bp or 1500 bp.
- the upper limit on the length of the double-stranded RNA may be dependent on i) the requirement for the dsRNA to be taken up by the insect and ii) the requirement for the dsRNA to be processed within the cell into fragments that direct RNAi.
- the chosen length may also be influenced by the method of synthesis of the RNA and the mode of delivery of the RNA to the cell.
- the double-stranded RNA to be used in the methods of the invention will be less than 10,000 bp in length, more preferably 1000 bp or less, more preferably 500 bp or less, more preferably 300 bp or less, more preferably 100 bp or less.
- the optimum length of the dsRNA for effective inhibition may be determined by experiment.
- the double-stranded RNA may be fully or partially double-stranded.
- Partially double-stranded RNAs may include short single-stranded overhangs at one or both ends of the double-stranded portion, provided that the RNA is still capable of being taken up by insects and directing RNAi.
- the double-stranded RNA may also contain internal non-complementary regions.
- the methods of the invention encompass the simultaneous or sequential provision of two or more different double-stranded RNAs or RNA constructs to the same insect, so as to achieve down-regulation or inhibition of multiple target genes or to achieve a more potent inhibition of a single target gene.
- the double-stranded RNA construct comprises multiple dsRNA regions, at least one strand of each dsRNA region comprising a nucleotide sequence that is complementary to at least part of a target nucleotide sequence of an insect target gene.
- the dsRNA regions in the RNA construct may be complementary to the same or to different target genes and/or the dsRNA regions may be complementary to targets from the same or from different insect species.
- hit is alternative wordings to indicate that at least one of the strands of the dsRNA is complementary to, and as such may bind to, the target gene or nucleotide sequence.
- the double stranded RNA region comprises multiple copies of the nucleotide sequence that is complementary to the target gene.
- the dsRNA hits more than one target sequence of the same target gene.
- the invention thus encompasses isolated double stranded RNA constructs comprising at least two copies of said nucleotide sequence complementary to at least part of a nucleotide sequence of an insect target.
- multiple in the context of the present invention means at least two, at least three, at least four, at least five, at least six, etc.
- a further target gene or “at least one other target gene” mean for instance a second, a third or a fourth, etc. target gene.
- DsRNA that hits more than one of the above-mentioned targets, or a combination of different dsRNA against different of the above mentioned targets are developed and used in the methods of the present invention.
- the invention relates to an isolated double stranded RNA construct comprising at least two copies of the RNA equivalent of at least one of the nucleotide sequences represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883
- said double-stranded RNA comprises the RNA equivalent of the nucleotide sequence as represented in SEQ ID NO 159 or 160, or a fragment of at least 17, preferably at least 18, 19, 20 or 21, more preferably at least 22, 23 or 24 basepairs in length thereof.
- the invention relates to an an isolated double stranded RNA construct comprising at least two copies of the RNA equivalent of the nucleotide sequence as represented by SEQ ID NO 159 or 160.
- the present invention extends to methods as described herein, wherein the dsRNA comprises annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of a target nucleotide sequence of an insect target gene, and which comprises the RNA equivalents of at least two nucleotide sequences independently chosen from each other.
- the dsRNA comprises the RNA equivalents of at least two, preferably at least three, four or five, nucleotide sequences independently chosen from the sequences represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878,
- the at least two nucleotide sequences may be derived from the target genes herein described.
- the dsRNA hits at least one target gene that is essential for viability, growth, development or reproduction of the insect and hits at least one gene involved in pathogenicity or infectivity as described hereinabove.
- the dsRNA hits multiple genes of the same category, for example, the dsRNA hits at least 2 essential genes or at least 2 genes involved in the same cellular function.
- the dsRNA hits two or more genes involved in protein synthesis (e.g. ribosome subunits), intracellular protein transport, nuclear mRNA splicing, or involved in one of the functions described in Table 1A.
- the present invention extends to methods as described herein, wherein said insect target gene comprises a sequence which is which is selected from the group comprising:
- dsRNA regions (or fragments) in the double stranded RNA may be combined as follows:
- target gene(s) to be combined may be chosen from one or more of the following categories of genes:
- all double stranded RNA regions comprise at least one strand that is complementary to at least part or a portion of the nucleotide sequence of any of the target genes herein described.
- the other double stranded RNA regions may comprise at least one strand that is complementary to a portion of any other insect target gene (including known target genes).
- the additional sequence is chosen from the group comprising (i) a sequence facilitating large-scale production of the dsRNA construct; (ii) a sequence effecting an increase or decrease in the stability of the dsRNA; (iii) a sequence allowing the binding of proteins or other molecules to facilitate uptake of the RNA construct by insects; (iv) a sequence which is an aptamer that binds to a receptor or to a molecule on the surface or in the cytoplasm of an insect to facilitate uptake, endocytosis and/or transcytosis by the insect; or (v) additional sequences to catalyze processing of dsRNA regions.
- the linker is a conditionally self-cleaving RNA sequence, preferably a pH sensitive linker or a hydrophobic sensitive linker.
- the multiple dsRNA regions of the double-stranded RNA construct are connected by one or more linkers.
- the linker is present at a site in the RNA construct, separating the dsRNA regions from another region of interest. Different linker types for the dsRNA constructs are provided by the present invention.
- the multiple dsRNA regions of the double-stranded RNA construct are connected without linkers.
- the linkers may be used to disconnect smaller dsRNA regions in the pest organism.
- the linker sequence may promote division of a long dsRNA into smaller dsRNA regions under particular circumstances, resulting in the release of separate dsRNA regions under these circumstances and leading to more efficient gene silencing by these smaller dsRNA regions.
- suitable conditionally self-cleaving linkers are RNA sequences that are self-cleaving at high pH conditions. Suitable examples of such RNA sequences are described by Borda et al. (Nucleic Acids Res. 2003 May 15; 31(10):2595-600), which document is incorporated herein by reference. This sequence originates from the catalytic core of the hammerhead ribozyme HH16.
- a linker is located at a site in the RNA construct, separating the dsRNA regions from another, e.g. the additional, sequence of interest, which preferably provides some additional function to the RNA construct.
- the dsRNA constructs of the present invention are provided with an aptamer to facilitate uptake of the dsRNA by the insect.
- the aptamer is designed to bind a substance which is taken up by the insect. Such substances may be from an insect or plant origin.
- an aptamer is an aptamer that binds to a transmembrane protein, for example a transmembrane protein of an insect.
- the aptamer may bind a (plant) metabolite or nutrient which is taken up by the insect.
- the linkers are self-cleaving in the endosomes. This may be advantageous when the constructs of the present invention are taken up by the insect via endocytosis or transcytosis, and are therefore compartmentalized in the endosomes of the insect species.
- the endosomes may have a low pH environment, leading to cleavage of the linker.
- linkers that are self-cleaving in hydrophobic conditions are particularly useful in dsRNA constructs of the present invention when used to be transferred from one cell to another via the transit in a cell wall, for example when crossing the cell wall of an insect pest organism.
- An intron may also be used as a linker.
- An “intron” as used herein may be any non-coding RNA sequence of a messenger RNA.
- Particular suitable intron sequences for the constructs of the present invention are (1) U-rich (35-45%); (2) have an average length of 100 bp (varying between about 50 and about 500 bp) which base pairs may be randomly chosen or may be based on known intron sequences; (3) start at the 5′ end with -AG:GT- or -CG:GT- and/or (4) have at their 3′ end -AG:GC- or -AG:AA.
- a non-complementary RNA sequence ranging from about 1 base pair to about 10,000 base pairs, may also be used as a linker.
- RNA interfering RNAs small interfering RNAs
- the double-stranded RNA added to the exterior of the cell wall may be any dsRNA or dsRNA construct that can be taken up into the cell and then processed within the cell into siRNAs, which then mediate RNAi, or the RNA added to the exterior of the cell could itself be an siRNA that can be taken up into the cell and thereby direct RNAi.
- siRNAs are generally short double-stranded RNAs having a length in the range of from 19 to 25 base pairs, or from 20 to 24 base pairs. In preferred embodiments siRNAs having 19, 20, 21, 22, 23, 24 or 25 base pairs, and in particular 21 or 22 base pairs, corresponding to the target gene to be down-regulated may be used. However, the invention is not intended to be limited to the use of such siRNAs.
- siRNAs may include single-stranded overhangs at one or both ends, flanking the double-stranded portion.
- the siRNA may contain 3′ overhanging nucleotides, preferably two 3′ overhanging thymidines (dTdT) or uridines (UU).
- 3′ TT or UU overhangs may be included in the siRNA if the sequence of the target gene immediately upstream of the sequence included in double-stranded part of the dsRNA is M. This allows the TT or UU overhang in the siRNA to hybridise to the target gene.
- siRNAs which are RNA/DNA chimeras are also contemplated. These chimeras include, for example, the siRNAs comprising a double-stranded RNA with 3′ overhangs of DNA bases (e.g.
- RNAs which are polynucleotides in which one or more of the RNA bases or ribonucleotides, or even all of the ribonucleotides on an entire strand, are replaced with DNA bases or deoxynucleotides.
- the dsRNA may be formed from two separate (sense and antisense) RNA strands that are annealed together by (non-covalent) basepairing.
- the dsRNA may have a foldback stem-loop or hairpin structure, wherein the two annealed strands of the dsRNA are covalently linked.
- the sense and antisense stands of the dsRNA are formed from different regions of single polynucleotide molecule that is partially self-complementary. RNAs having this structure are convenient if the dsRNA is to be synthesised by expression in vivo, for example in a host cell or organism as discussed below, or by in vitro transcription.
- the loop structure may comprise linker sequences or additional sequences as described above.
- target nucleotide sequences of the insect target genes herein disclosed are particularly important to design the dsRNA constructs according to the present invention.
- target nucleotide sequences are preferably at least 17, preferably at least 18, 19, 20 or 21, more preferably at least 22, 23 or 24 nucleotides in length.
- Non-limiting examples of preferred target nucleotide sequences are given in the examples.
- the present invention provides an isolated nucleotide sequence encoding a double stranded RNA or double stranded RNA construct as described herein.
- the present invention relates to an isolated nucleic acid sequence consisting of a sequence represented by any of SEQ ID NOs 49 to 158, 275 to 472, 533 to 575, 621 to 767, 813 to 862, 908 to 1040, 1161 to 1571, 1730 to 2039, 2120 to 2338, 2384 to 2460, or a fragment of at least 17 preferably at least 18, 19, 20 or 21, more preferably at least 22, 23 or 24 nucleotides thereof.
- Protein, or nucleotide sequences are likely to be homologous if they show a “significant” level of sequence similarity or more preferably sequence identity.
- Truely homologous sequences are related by divergence from a common ancestor gene.
- Sequence homologues can be of two types: (i) where homologues exist in different species they are known as orthologues. e.g. the ⁇ -globin genes in mouse and human are orthologues.
- paralogues are homologous genes in within a single species. e.g. the ⁇ - and ⁇ -globin genes in mouse are paralogues
- Preferred homologues are genes comprising a sequence which is at least about 85% or 87.5%, still more preferably about 90%, still more preferably at least about 95% and most preferably at least about 99% identical to a sequence selected from the group of sequences represented by SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801,
- sequence identity refers to the relationship between sequences at the nucleotide level.
- the expression “% identical” is determined by comparing optimally aligned sequences, e.g. two or more, over a comparison window wherein the portion of the sequence in the comparison window may comprise insertions or deletions as compared to the reference sequence for optimal alignment of the sequences. The reference sequence does not comprise insertions or deletions.
- the reference window is chosen from between at least 10 contiguous nucleotides to about 50, about 100 or to about 150 nucleotides, preferably between about 50 and 150 nucleotides. “% identity” is then calculated by determining the number of nucleotides that are identical between the sequences in the window, dividing the number of identical nucleotides by the number of nucleotides in the window and multiplying by 100.
- genes comprising at least one single nucleotide polymorphism (SNIP) compared to a gene comprising a sequence as represented by any of SEQ ID NO 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159,160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888,
- SNIP
- the invention encompasses target genes which are insect orthologues of a gene comprising a nucleotide sequence as represented in any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 890, 890
- orthologues may comprise a nucleotide sequence as represented in any of SEQ ID NOs 49 to 123, 275 to 434, 533 to 562, 621 to 738, 813 to 852, 908 to 1010, 1161 to 1437, 1730 to 1987, 2120 to 2290, and 2384 to 2438, or a fragment thereof of at least 17, 18, 19, 20, 21, 22, 23, 24, 25, 26 or 27 nucleotides.
- a non-limiting list of insect or arachnida orthologues genes or sequences comprising at least a fragment of 17 bp of one of the sequences of the invention, is given in Tables 4.
- the invention encompasses target genes which are nematode orthologues of a gene comprising a nucleotide sequence as represented in any of 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892
- nematode orthologues may comprise a nucleotide sequence as represented in any of SEQ ID NOs 124 to 135, 435 to 446, 563 to 564, 739 to 751, 853, 854, 1011 to 1025, 1438 to 1473, 1988 to 2001, 2291 to 2298, 2439 or 2440, or a fragment of at least 17, 18, 19, 20 or 21 nucleotides thereof.
- the invention thus encompasses any of the methods described herein for controlling nematode growth in an organism, or for preventing nematode infestation of an organism susceptible to nematode infection, comprising contacting nematode cells with a double-stranded RNA, wherein the double-stranded RNA comprises annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of the nucleotide sequence of a target gene comprising a fragment of at least 17, 18, 19, 20 or 21 nucleotides of any of the sequences as represented in SEQ ID NOs 124 to 135, 435 to 446, 563 to 564, 739 to 751, 853, 854, 1011 to 1025, 1438 to 1473, 1988 to 2001, 2291 to 2298, 2439 or 2440, whereby the double-stranded RNA is taken up by the nematode and thereby controls growth or prevents infestation.
- the invention also relates to nematode-resistant transgenic plants comprising a fragment of at least 17, 18, 19, 20 or 21 nucleotides of any of the sequences as represented in SEQ ID NOs 124 to 135, 435 to 446, 563 to 564, 739 to 751, 853, 854, 1011 to 1025, 1438 to 1473, 1988 to 2001, 2291 to 2298, 2439 or 2440.
- a non-limiting list of nematode orthologues genes or sequences comprising at least a fragment of 17 bp of one of the sequences of the invention, is given in Tables 5.
- the invention encompasses target genes which are fungal orthologues of a gene comprising a nucleotide sequence as represented in any of 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894
- fungal orthologues may comprise a nucleotide sequence as represented in any of SEQ ID NOs 136 to 158, 447 to 472, 565 to 575, 752 to 767, 855 to 862, 1026 to 1040, 1475 to 1571, 2002 to 2039, 2299 to 2338, 2441 to 2460, or a fragment of at least 17, 18, 19, 20, 21, 22, 23, 24, 25, 26 or 27 nucleotides thereof.
- the invention thus encompasses any of the methods described herein for controlling fungal growth on a cell or an organism, or for preventing fungal infestation of a cell or an organism susceptible to fungal infection, comprising contacting fungal cells with a double-stranded RNA, wherein the double-stranded RNA comprises annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of the nucleotide sequence of a target gene comprising a fragment of at least 17, 18, 19, 20 or 21 nucleotides of any of the sequences as represented in SEQ ID NOs 136 to 158, 447 to 472, 565 to 575, 752 to 767, 855 to 862, 1026 to 1040, 1475 to 1571, 2002 to 2039, 2299 to 2338, 2441 to 2460, whereby the double-stranded RNA is taken up by the fungus and thereby controls growth or prevents infestation.
- the invention also relates to fungal-resistant transgenic plants comprising a fragment of at least 17, 18, 19, 20 or 21 of any of the sequences as represented in SEQ ID NOs 136 to 158, 447 to 472, 565 to 575, 752 to 767, 855 to 862, 1026 to 1040, 1475 to 1571, 2002 to 2039, 2299 to 2338, 2441 to 2460.
- a non-limiting list of fungal orthologues genes or sequences comprising at least a fragment of 17 bp of one of the sequences of the invention, is given in Tables 6.
- the dsRNA may be expressed by (e.g. transcribed within) a host cell or host organism, the host cell or organism being an organism susceptible or vulnerable to infestation by an insect.
- RNAi-mediated gene silencing of one or more target genes in the insect may be used as a mechanism to control growth of the insect in or on the host organism and/or to prevent or reduce insect infestation of the host organism.
- expression of the double-stranded RNA within cells of the host organism may confer resistance to a particular insect or to a class of insects.
- expression of the double-stranded RNA within cells of the host organism may confer resistance to more than one insect or more than one class of insects.
- the host organism is a plant and the insect is a plant pathogenic insect.
- the insect is contacted with the double-stranded RNA by expressing the double-stranded RNA in a plant or plant cell that is infested with or susceptible to infestation with the plant pathogenic insect.
- plant encompasses any plant material that it is desired to treat to prevent or reduce insect growth and/or insect infestation. This includes, inter alia, whole plants, seedlings, propagation or reproductive material such as seeds, cuttings, grafts, explants, etc. and also plant cell and tissue cultures.
- the plant material should express, or have the capability to express, dsRNA corresponding to one or more target genes of the insect.
- the invention provides a plant, preferably a transgenic plant, or propagation or reproductive material for a (transgenic) plant, or a plant cell culture expressing or capable of expressing at least one double-stranded RNA, wherein the double-stranded RNA comprises annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of a target nucleotide sequence of a target gene of an insect, such that the double-stranded RNA is taken up by an insect upon plant-insect interaction, said double stranded RNA being capable of inhibiting the target gene or down-regulating expression of the target gene by RNA interference.
- the target gene may be any of the target genes herein described, for instance a target gene that is essential for the viability, growth, development or reproduction of the insect.
- the insect can be any insect, but is preferably plant pathogenic insect.
- Preferred plant pathogenic insects include, but are not limited to, those listed above.
- a plant to be used in the methods of the invention, or a transgenic plant according to the invention encompasses any plant, but is preferably a plant that is susceptible to infestation by a plant pathogenic insect.
- the present invention extends to methods as described herein wherein the plant is chosen from the following group of plants (or crops): alfalfa, apple, apricot, artichoke, asparagus, avocado, banana, barley, beans, beet, blackberry, blueberry, broccoli, brussel sprouts, cabbage, canola, carrot, cassaya, cauliflower, a cereal, celery, cherry, citrus, clemintine, coffee, corn, cotton, cucumber, eggplant, endive, eucalyptus, figes, grape, grapefruit, groundnuts, ground cherry, kiwifruit, lettuce, leek, lemon, lime, pine, maize, mango, melon, millet, mushroom, nut aot, okra, onion, orange, an ornamental plant or flower or tree, papaya, parsley, pea, peach, peanut, peat, pepper, persimmon, pineapple, plantain, plum, pomegranate, potato, pumpkin, radicchio, radish,
- the present invention extends to methods as described herein, wherein the plant is potato and the target gene is a gene from an insect selected from the group consisting of Leptinotarsa spp. (e.g. L. decemlineata (Colorado potato beetle), L. juncta (false potato beetle), or L. texana (Texan false potato beetle)); Lema spp. (e.g. L. trilineata (three-lined potato beetle)); Epitrix spp. (e.g. E. cucumeris (potato flea beetle) or E. tuberis (tuber flea beetle)); Epicauta spp.
- Leptinotarsa spp. e.g. L. decemlineata (Colorado potato beetle), L. juncta (false potato beetle), or L. texana (Texan false potato
- E. vittata striped blister beetle
- Phaedon spp. e.g. P. cochleariae (mustard leaf beetle)
- Empoasca spp. e.g. E. fabae (potato leafhopper)
- Myzus spp. e.g. M. persicae (green peach aphid)
- Paratrioza spp. e.g. P. cockerelli (potato psyllid)
- Ostrinia spp. e.g. O. nubilalis (European corn borer)
- Conoderus spp. e.g. C. falli (southern potato wireworm), or C.
- the present invention extends to methods as described herein, wherein the plant is tomato and the target gene is a gene from an insect selected from the group consisting of: Macrosiphum spp. (e.g. M. euphorbiae (potato aphid)); Myzus spp. (e.g. M. persicae (green peach aphid)); Trialeurodes spp. (e.g. T. vaporariorum (greenhouse whitefly), or T.
- Macrosiphum spp. e.g. M. euphorbiae (potato aphid)
- Myzus spp. e.g. M. persicae (green peach aphid)
- Trialeurodes spp. e.g. T. vaporariorum (greenhouse whitefly), or T.
- abutilonia banded-winged whitefly
- Bemisia spp. e.g. B. argentifolii (silverleaf whitefly)
- Frankliniella spp. e.g. F. occidentalis (western flower thrips)
- Leptinotarsa spp. e.g. L. decemlineata (Colorado potato beetle), L. juncta (false potato beetle), or L. texana (Texan false potato beetle)
- Epitrix spp. e.g. E. hirtipennis (flea beetle)
- Lygus spp. e.g. L.
- Euschistus spp. e.g. E. conspresus (consperse stinkbug)
- Nezara spp. e.g. N. viridula (southern green stinkbug)
- Thyanta spp. e.g. T. pallidovirens (redshouldered stinkbug)
- Phthorimaea spp. e.g. P. operculella (potato tuberworm)
- Helicoverpa spp. e.g. H. zea (tomato fruitworm); Keiferia spp. (e.g. K.
- lycopersicella tomato pinworm
- Spodoptera spp. e.g. S. exigua (beet armyworm), or S. praefica (western yellowstriped armyworm)
- Limonius spp. wireworms
- Agrotis spp. e.g. A. ipsilon (black cutworm)
- Manduca spp. e.g. M. sexta (tobacco hornworm), or M. quinquemaculata (tomato hornworm)
- Liriomyza spp. e.g. L. sativae, L. trifolli or L. huidobrensis (leafminer)
- the present invention extends to methods as described herein, wherein the plant is corn and the target gene is a gene from an insect selected from the group consisting of: Diabrotica spp. (e.g. D. virgifera virgifera (western corn rootworm), D. barberi (northern corn rootworm), D. undecimpunctata howardi (southern corn rootworm), D. virgifera zeae (Mexican corn rootworm); D. balteata (banded cucumber beetle)); Ostrinia spp. (e.g. O.
- Diabrotica spp. e.g. D. virgifera virgifera (western corn rootworm), D. barberi (northern corn rootworm), D. undecimpunctata howardi (southern corn rootworm), D. virgifera zeae (Mexican corn rootworm); D. balteata (banded cucumber be
- nubilalis European corn borer
- Agrotis spp. e.g. A. ipsilon (black cutworm)
- Helicoverpa spp. e.g. H. zea (corn earworm)
- Spodoptera spp. e.g. S. frugiperda (fall armyworm)
- Diatraea spp. e.g. D. grandiosella (southwestern corn borer), or D. saccharalis (sugarcane borer)
- Elasmopalpus spp. e.g. E. lignosellus (lesser cornstalk borer)
- Melanotus spp. wireworms
- Cyclocephala spp. e.g.
- C. borealis (northern masked chafer)); Cyclocephala spp. (e.g. C. immaculata (southern masked chafer)); Popillia spp. (e.g. P. japonica (Japanese beetle)); Chaetocnema spp. (e.g. C. pulicaria (corn flea beetle)); Sphenophorus spp. (e.g. S. maidis (maize billbug)); Rhopalosiphum spp. (e.g. R. maidis (corn leaf aphid)); Anuraphis spp. (e.g. A.
- maidiradicis corn root aphid
- Blissus spp. e.g. B. leucopterus leucopterus (chinch bug)
- Melanoplus spp. e.g. M. femurrubrum (redlegged grasshopper), M. sanguinipes (migratory grasshopper)
- Hylemya spp. e.g. H. platura (seedcorn maggot)
- Agromyza spp. e.g. A. parvicomis (corn blot leafminer)
- Anaphothrips spp. e.g. A. obscrurus (grass thrips)
- Solenopsis spp. e.g. S.
- the present invention extends to methods as described herein, wherein the plant is cotton and the target gene is a gene from an insect selected from the group consisting of: Helicoverpa spp. (e.g. H. zea (cotton bollworm)); Pectinophora spp. (e.g. P. gossypiella (pink bollworm)); Helicoverpa spp. (e.g. H. armigera (American bollworm)); Earias spp. (e.g. E.
- Helicoverpa spp. e.g. H. zea (cotton bollworm)
- Pectinophora spp. e.g. P. gossypiella (pink bollworm)
- Helicoverpa spp. e.g. H. armigera (American bollworm)
- Earias spp. e.g. E.
- vittella spotted bollworm
- Heliothis spp. e.g. H. virescens (tobacco budworm)
- Spodoptera spp. e.g. S. exigua (beet armyworm)
- Anthonomus spp. e.g. A. grandis (boll weevil)
- Pseudatomoscelis spp. e.g. P. seriatus (cotton fleahopper)
- Trialeurodes spp. e.g. T. abutiloneus (banded-winged whitefly) T. vaporariorum (greenhouse whitefly)
- Bemisia spp. e.g. B.
- argentifolii silverleaf whitefly
- Aphis spp. e.g. A. gossypii (cotton aphid)
- Lygus spp. e.g. L. lineolaris (tarnished plant bug) or L. hesperus (western tarnished plant bug)
- Euschistus spp. e.g. E. conspersus (consperse stink bug)
- Chlorochroa spp. e.g. C. sayi (Say stinkbug)
- Nezara spp. e.g. N. viridula (green stinkbug)
- Thrips spp. e.g. T.
- the present invention extends to methods as described herein, wherein the plant is rice and the target gene is a gene from an insect selected from the group consisting of: Nilaparvata spp.
- N. lugens (brown planthopper)
- Laodelphax spp. e.g. L. striatellus (small brown planthopper)
- Nephotettix spp. e.g. N. virescens or N. cincticeps (green leafhopper), or N. nigropictus (rice leafhopper)
- Sogatella spp. e.g. S. furcifera (white-backed planthopper)
- Blissus spp. e.g. B. leucopterus leucopterus (chinch bug)
- Scotinophora spp. e.g. S. vermidulate (rice blackbug)
- spp. e.g. A. hilare (green stink bug)
- Pamara spp. e.g. P. guttata (rice skipper)
- Chilo spp. e.g. C. suppressalis (rice striped stem borer), C. auricilius (gold-fringed stem borer), or C. polychrysus (dark-headed stem borer)
- Chilotraea spp. e.g. C. polychrysa (rice stalk borer)
- Sesamia spp. e.g. S. inferens (pink rice borer)
- Tryporyza spp. e.g. T. innotata (white rice borer)
- T. incertulas e.g T. incertulas (yellow rice borer)
- Cnaphalocrocis spp. e.g. C. medinalis (rice leafroller)
- Agromyza spp. e.g. A. oryzae (leafminer)
- Diatraea spp. e.g. D. saccharalis (sugarcane borer)
- Namaga spp. e.g. N. aenescens (green rice caterpillar)
- Xanthodes spp. e.g. X. transversa (green caterpillar)
- Spodoptera spp. e.g. S.
- frugiperda (fall armyworm)); Mythimna spp. (e.g. Mythmna ( Pseudaletia ) seperata (armyworm)); Helicoverpa spp. (e.g. H. zea (corn earworm)); Colaspis spp. (e.g. C. brunnea (grape colaspis )); Lissorhoptrus spp. (e.g. L. oryzophilus (rice water weevil)); Echinocnemus spp. (e.g. E. squamos (rice plant weevil)); Diclodispa spp. (e.g. D.
- Oulema spp. e.g. O. oryzae (leaf beetle); Sitophilus spp. (e.g. S. oryzae (rice weevil)); Pachydiplosis spp. (e.g. P. oryzae (rice gall midge)); Hydrellia spp. (e.g. H. griseola (small rice leafminer)); Chlorops spp. (e.g. C. oryzae (stem maggot)); and Hydrellia spp. (e.g. H. sasakii (rice stem maggot));
- Oulema spp. e.g. O. oryzae (leaf beetle); Sitophilus spp. (e.g. S. oryzae (rice weevil)); Pachydiplosis spp. (e.g. P. oryzae (rice gall midge)); Hydrellia spp. (e.g
- Transgenic plants according to the invention extend to all plant species specifically described above being resistant to the respective insect species as specifically described above.
- Preferred transgenic plants are plants (or reproductive or propagation material for a transgenic plant, or a cultured transgenic plant cell) wherein said plant comprises a nucleic acid sequence which is selected from the group comprising:
- nucleic acid is an insect orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 49 to 158, 275 to 472, 533 to 575, 621 to 767, 813 to 862, 908 to ⁇ 1040, 1161 to 1571, 1730 to 2039, 2120 to 2338, 2384 to 2460, or the complement thereof.
- the present invention also encompasses plants (or reproductive or propagation material for a transgenic plant, or a cultured transgenic plant cell) which express or are capable of expressing at least one of the nucleotides of the invention, for instance at least one of the nucleotide sequences represented in any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159,160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788,
- the plant may be provided in a form wherein it is actively expressing (transcribing) the double-stranded RNA in one or more cells, cell types or tissues.
- the plant may be “capable of expressing”, meaning that it is transformed with a transgene which encodes the desired dsRNA but that the transgene is not active in the plant when (and in the form in which) the plant is supplied.
- a recombinant DNA construct comprising the nucleotide sequence encoding the dsRNA or dsRNA construct according to the present invention operably linked to at least one regulatory sequence.
- the regulatory sequence is selected from the group comprising constitutive promoters or tissue specific promoters as described below.
- the target gene may be any target gene herein described.
- the regulatory element is a regulatory element that is active in a plant cell. More preferably, the regulatory element is originating from a plant.
- the term “regulatory sequence” is to be taken in a broad context and refers to a regulatory nucleic acid capable of effecting expression of the sequences to which it is operably linked.
- promoters and nucleic acids or synthetic fusion molecules or derivatives thereof which activate or enhance expression of a nucleic acid so called activators or enhancers.
- operably linked refers to a functional linkage between the promoter sequence and the gene of interest, such that the promoter sequence is able to initiate transcription of the gene of interest.
- the transgene nucleotide sequence encoding the double-stranded RNA could be placed under the control of an inducible or growth or developmental stage-specific promoter which permits transcription of the dsRNA to be turned on, by the addition of the inducer for an inducible promoter or when the particular stage of growth or development is reached.
- the transgene encoding the double-stranded RNA is placed under the control of a strong constitutive promoter such as any selected from the group comprising the CaMV35S promoter, doubled CaMV35S promoter, ubiquitin promoter, actin promoter, rubisco promoter, GOS2 promoter, Figwort mosaic viruse (FMV) 34S promoter, cassaya vein mosaic virus (CsVMV) promoter (Verdaguer B. et al, Plant Mol. Biol. 1998 37(6):1055-67).
- a strong constitutive promoter such as any selected from the group comprising the CaMV35S promoter, doubled CaMV35S promoter, ubiquitin promoter, actin promoter, rubisco promoter, GOS2 promoter, Figwort mosaic viruse (FMV) 34S promoter, cassaya vein mosaic virus (CsVMV) promoter (Verdaguer B. et al, Plant Mol. Biol. 1998 37(6):1055-67).
- the transgene encoding the double-stranded RNA is placed under the control of a tissue specific promoter such as any selected from the group comprising root specific promoters of genes encoding PsMTA Class III chitinase, photosynthetic tissue-specific promoters such as promoters of cab1 and cab2, rbcS, gapA, gapB and ST-LS1 proteins, JAS promoters, chalcone synthase promoter and promoter of RJ39 from strawberry.
- a tissue specific promoter such as any selected from the group comprising root specific promoters of genes encoding PsMTA Class III chitinase, photosynthetic tissue-specific promoters such as promoters of cab1 and cab2, rbcS, gapA, gapB and ST-LS1 proteins, JAS promoters, chalcone synthase promoter and promoter of RJ39 from strawberry.
- the transgene encoding the double-stranded RNA is placed under the control of an insect-induced promoter, for instance the potato proteinase inhibitor II (PinII) promoter (Duan X et al, Nat. Biotechnol. 1996, 14(4):494-8); or a wounding-induced promoter, for instance the jasmonates and ethylene induced promoters, PDF1.2 promoter (Manners J M et al., Plant Mol. Biol.
- an insect-induced promoter for instance the potato proteinase inhibitor II (PinII) promoter (Duan X et al, Nat. Biotechnol. 1996, 14(4):494-8); or a wounding-induced promoter, for instance the jasmonates and ethylene induced promoters, PDF1.2 promoter (Manners J M et al., Plant Mol. Biol.
- a defense related promoter for instance the salicylic acid induced promoters and plant-pathogenesis related protein (PR protein) promoters (PR1 promoter (Cornelissen B J et al., Nucleic Acids Res. 1987, 15(17):6799-811; COMT promoter (Toquin V et al, Plant Mol. Biol. 2003, 52(3):495-509).
- PR protein plant-pathogenesis related protein
- the plants could preferably express the dsRNA in a plant part that is first accessed or damaged by the plant pest.
- preferred tissues to express the dsRNA are the leaves, stems, roots, and seeds.
- a plant tissue-preferred promoter may be used, such as a leaf-specific promoter, a stem-specific promoter, a phloem-specific promoter, a xylem-specific promoter, a root-specific promoter, or a seed-specific promoter (sucrose transporter gene AtSUC promoter (Baud S et al., Plant J. 2005, 43(6):824-36), wheat high molecular weight glutenin gene promoter (Robert L S et al., Plant Cell. 1989, 1(6):569-78.)).
- Suitable examples of a root specific promoter are PsMTA (Fordam-Skelton, A. P., et al., 1997 Plant Molecular Biology 34: 659-668.) and the Class III Chitinase promoter.
- leaf- and stem-specific or photosynthetic tissue-specific promoters that are also photoactivated are promoters of two chlorophyll binding proteins (cab1 and cab2) from sugar beet (Stahl D. J., et al., 2004 BMC Biotechnology 2004 4:31), ribulose-bisphosphate carboxylase (Rubisco), encoded by rbcS (Nomura M. et al., 2000 Plant Mol. Biol.
- a (gapA) and B (gapB) subunits of chloroplast glyceraldehyde-3-phosphate dehydrogenase (Conley T. R. et al. 1994 Mol. Cell. Biol. 19: 2525-33; Kwon H. B. et al. 1994 Plant Physiol. 105: 357-67), promoter of the Solanum tuberosum gene encoding the leaf and stem specific (ST-LS1) protein (Zaidi M. A. et al., 2005 Transgenic Res. 14:289-98), stem-regulated, defense-inducible genes, such as JAS promoters (patent publication no. 20050034192/US-A1).
- a flower-specific promoter is for instance, the chalcone synthase promoter (Faktor O. et al. 1996 Plant Mol. Biol. 32: 849) and an example of a fruit-specific promoter is for instance RJ39 from strawberry (WO 98 31812).
- promoters useful for the expression of dsRNA include, but are not limited to, promoters from an RNA Poll, an RNA Poll, an RNA PolIII, T7 RNA polymerase or SP6 RNA polymerase. These promoters are typically used for in vitro-production of dsRNA, which dsRNA is then included in an antiinsecticidal agent, for example, in an anti-insecticidal liquid, spray or powder.
- the present invention also encompasses a method for generating any of the double-stranded RNA or RNA constructs of the invention. This method comprises the steps of
- transcription termination sequences may also be incorporated in the recombinant construct of the invention.
- transcription termination sequence encompasses a control sequence at the end of a transcriptional unit, which signals 3′ processing and poly-adenylation of a primary transcript and termination of transcription. Additional regulatory elements, such as transcriptional or translational enhancers, may be incorporated in the expression construct.
- the recombinant constructs of the invention may further include an origin of replication which is required for maintenance and/or replication in a specific cell type.
- an origin of replication which is required for maintenance and/or replication in a specific cell type.
- an expression construct is required to be maintained in a bacterial cell as an episomal genetic element (e.g. plasmid or cosmid molecule) in a cell.
- Preferred origins of replication include, but are not limited to, f1-ori and colE1 ori.
- the recombinant construct may optionally comprise a selectable marker gene.
- selectable marker gene includes any gene, which confers a phenotype on a cell in which it is expressed to facilitate the identification and/or selection of cells, which are transfected or transformed, with an expression construct of the invention.
- suitable selectable markers include resistance genes against ampicillin (Amp r ), tetracycline (Tcr), kanamycin (Kan r ), phosphinothricin, and chloramphenicol (CAT) gene.
- Other suitable marker genes provide a metabolic trait, for example manA.
- Visual marker genes may also be used and include for example beta-glucuronidase (GUS), luciferase and Green Fluorescent Protein (GFP).
- Plants that have been stably transformed with a transgene encoding the dsRNA may be supplied as seed, reproductive material, propagation material or cell culture material which does not actively express the dsRNA but has the capability to do so.
- the present invention encompasses a plant (e.g. a rice plant), or a seed (e.g. a rice seed), or a cell (e.g. a bacterial or plant cell), comprising at least one double-stranded RNA or at least one double-stranded RNA construct as described herein: or at least one nucleotide sequence or at least one recombinant DNA construct as described herein; or at least one plant cell as described herein.
- the present invention also encompasses a plant (e.g.
- a bacterial or plant cell comprising at least one double-stranded RNA or at least one double-stranded RNA construct as described herein: or at least one nucleotide sequence or at least one recombinant DNA construct as described herein.
- these plants or seeds or cells comprise a recombinant construct wherein the nucleotide sequence encoding the dsRNA or dsRNA construct according to the present invention is operably linked to at least one regulatory element as described above.
- the plant may be provided in a form wherein it is actively expressing (transcribing) the RNA molecule in one or more cells, cell types or tissues.
- the plant may be “capable of expressing”, meaning that it is transformed with a transgene which encodes the desired RNA molecule but that the transgene is not active in the plant when (and in the form in which) the plant is supplied.
- a recombinant (expression) construct for expression of an RNA molecule in a plant or in a plant cell comprising at least one regulatory sequence operably linked to a nucleic acid molecule comprising at least 14, 15, 16, 17, 18, 19, 20, 21, 22 etc.
- nucleotides up to all of the nucleotides of the sequence set forth as SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 90
- nucleic acid up to all nucleotides of the sequence of an orthologous nucleic acid molecule from a different target species.
- Many vectors are available for this purpose, and selection of the appropriate vector will depend mainly on the size of the nucleic acid to be inserted into the vector and the particular host cell to be transformed with the vector.
- RNA silencing in plants the contents of which are incorporated herein by reference. More particularly, methods for expression of double-stranded RNA in plants for the purposes of down-regulating gene expression in plant pests such as nematodes or insects are also known in the art. Similar methods can be applied in an analogous manner in order to express double-stranded RNA in plants for the purposes of down-regulating expression of a target gene in a plant pathogenic insect.
- the plant In order to achieve this effect it is necessary only for the plant to express (transcribe) the double-stranded RNA in a part of the plant which will come into direct contact with the insect, such that the double-stranded RNA can be taken up by the insect.
- expression of the dsRNA could occur within a cell or tissue of a plant within which the insect is also present during its life cycle, or the RNA may be secreted into a space between cells, such as the apoplast, that is occupied by the insect during its life cycle.
- the dsRNA may be located in the plant cell, for example in the cytosol, or in the plant cell organelles such as a chloroplast, mitochondrion, vacuole or endoplastic reticulum.
- the dsRNA may be secreted by the plant cell and by the plant to the exterior of the plant.
- the dsRNA may form a protective layer on the surface of the plant.
- the invention also provides combinations of methods and compositions for preventing or protecting plants from pest infestation.
- one means provides using the plant transgenic approach combining methods using expression of dsRNA molecules and methods using expression of such Bt insecticidal proteins.
- the invention also relates to a method or a plant cell or plant described herein, wherein said plant cell or plant expressing said RNA molecule comprises or expresses a pesticidal agent selected from the group consisting of a patatin, a Bacillus thuringiensis insecticidal protein, a Xenorhabdus insecticidal protein, a Photorhabdus insecticidal protein, a Bacillus laterosporous insecticidal protein, and a Bacillus sphearicus insecticidal protein.
- a pesticidal agent selected from the group consisting of a patatin, a Bacillus thuringiensis insecticidal protein, a Xenorhabdus insecticidal protein, a Photorhabdus insecticidal protein, a Bacillus laterosporous insecticidal protein, and a Bacillus sphearicus insecticidal protein.
- Bacillus thuringiensis insecticidal protein is selected from the group consisting of a Cry1, a Cry3, a TIC851, a CryET170, a Cry22, a binary insecticidal protein CryET33 and CryET34, a binary insecticidal protein CryET80 and CryET76, a binary insecticidal protein TIC100 and TIC101, and a binary insecticidal protein PS149B1.
- the invention relates to a composition for controlling insect growth and/or preventing or reducing insect infestation, comprising at least a plant part, plant cell, plant tissue or seed comprising at least one double-stranded RNA, wherein said double-stranded RNA comprises annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of a nucleotide sequence of an insect target gene.
- the composition further comprises at least one suitable carrier, excipient or diluent.
- the target gene may be any target gene described herein.
- the insect target gene is essential for the viability, growth, development or reproduction of the insect.
- the invention relates to a composition as described above, wherein the insect target gene comprises a sequence which is at least 75%, preferably at least 80%, 85%, 90%, more preferably at least 95%, 98% or 99% identical to a sequence selected from the group of sequences represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788,
- the present invention extends to a method for increasing plant yield comprising introducing in a plant any of the nucleotide sequences or recombinant DNA constructs as herein described in an expressible format. Plants encompassed by this method are as described earlier.
- FIG. 1-LD Survival of L. decemlineata on artificial diet treated with dsRNA. Insects of the second larval stage were fed diet treated with 50 ⁇ l of topically-applied solution of dsRNA (targets or gfp control). Diet was replaced with fresh diet containing topically-applied dsRNA after 7 days. The number of surviving insects were assessed at days 2, 5, 7, 8, 9, & 13. The percentage of surviving larvae was calculated relative to day 0 (start of assay).
- Target LD006 (SEQ ID NO 178); Target LD007 (SEQ ID NO 183); Target LD010 (SEQ ID NO 188); Target LD011 (SEQ ID NO 193); Target LD014 (SEQ ID NO 198); gfp dsRNA (SEQ ID NO 235).
- FIG. 2-LD Survival of L. decemlineata on artificial diet treated with dsRNA. Insects of the second larval stage were fed diet treated with 50 ⁇ l of topically-applied solution of dsRNA (targets or gfp control). Diet was replaced with fresh diet only after 7 days. The number of surviving insects was assessed at days 2, 5, 6, 7, 8, 9, 12, & 14. The percentage of surviving larvae was calculated relative to day 0 (start of assay).
- Target LD001 SEQ ID NO 163
- Target LD002 SEQ ID NO 168
- Target LD003 SEQ ID NO 173
- Target LD015 SEQ ID NO 215
- Target LD016 SEQ ID NO 220
- gfp dsRNA SEQ ID NO 235
- FIG. 3-LD Average weight of L. decemlineata larvae on potato leaf discs treated with dsRNA. Insects of the second larval stage were fed leaf discs treated with 20 ⁇ l of a topically-applied solution (10 ng/ ⁇ l) of dsRNA (target LD002 or gfp). After two days the insects were transferred on to untreated leaves every day.
- FIG. 4-LD Survival of L. decemlineata on artificial diet treated with shorter versions of target LD014 dsRNA and concatemer dsRNA. Insects of the second larval stage were fed diet treated with 50 ⁇ l of topically-applied solution of dsRNA (gfp or targets). The number of surviving insects were assessed at days 3, 4, 5, 6, & 7. The percentage of surviving larvae were calculated relative to day 0 (start of assay).
- FIG. 5-LD Survival of L. decemlineata larvae on artificial diet treated with different concentrations of dsRNA of target LD002 (a), target LD007 (b), target LD010 (c), target LD011 (d), target LD014 (e), target LD015 (f), LD016 (g) and target LD027 (h).
- Insects of the second larval stage were fed diet treated with 50 ⁇ l of topically-applied solution of dsRNA. Diet was replaced with fresh diet containing topically-applied dsRNA after 7 days. The number of surviving insects were assessed at regular intervals. The percentage of surviving larvae were calculated relative to day 0 (start of assay).
- FIG. 6-LD Survival of L. decemlineata adults on potato leaf discs treated with dsRNA. Young adult insects were fed double-stranded-RNA-treated leaf discs for the first two days and were then placed on untreated potato foliage. The number of surviving insects were assessed regularly; mobile insects were recorded as insects which were alive and appeared to move normally; moribund insects were recorded as insects which were alive but appeared sick and slow moving—these insects were not able to right themselves once placed on their backs.
- Target LD002 SEQ ID NO 168
- Target LD010 SEQ ID NO 188
- Target LD014 SEQ ID NO 198
- Target LD016 SEQ ID NO 220
- gfp dsRNA SEQ ID NO 235
- FIG. 7-LD Mortality and growth/developmental delay of larval survivors of the Colorado potato beetle, Leptinotarsa decemlineata , on transgenic potato plants. Seven CPB L1 larvae were fed on transgenic potato siblings harbouring LD002 construct ( ⁇ ), empty vector ( ⁇ ), or wild type line V plants ( ⁇ ) for seven days. Mortality is expressed in percentage and average larval weight in mg.
- FIG. 1-PC Effects of ingested target dsRNAs on survival and growth of P. cochleariae larvae.
- Neonate larvae were fed oilseed rape leaf discs treated with 25 ⁇ l of topically-applied solution of 0.1 ⁇ g/ ⁇ l dsRNA (targets or gfp control). After 2 days, the insects were transferred onto fresh dsRNA-treated leaf discs. At day 4, larvae from one replicate for every treatment were collected and placed in a Petri dish containing fresh untreated oilseed rape foliage. The insects were assessed at days 2, 4, 7, 9 & 11.
- FIG. 2-PC Survival of P. cochleariae on oilseed rape leaf discs treated with different concentrations of dsRNA of (a) target PC010 and (b) target PC027. Neonate larvae were placed on leaf discs treated with 25 ⁇ l of topically-applied solution of dsRNA. Insects were transferred to fresh treated leaf discs at day 2. At day 4 for target PC010 and day 5 for target PC027, the insects were transferred to untreated leaves. The number of surviving insects were assessed at days 2, 4, 7, 8, 9 & 11 for PC010 and 2, 5, 8, 9 & 12 for PC027. The percentage of surviving larvae was calculated relative to day 0 (start of assay).
- FIG. 1-EV Survival of E. varivestis larvae on bean leaf discs treated with dsRNA. Neonate larvae were fed bean leaf discs treated with 25 ⁇ l of topically-applied solution of 1 ⁇ g/ ⁇ l dsRNA (targets or gfp control). After 2 days, the insects were transferred onto fresh dsRNA-treated leaf discs. At day 4, larvae from one treatment were collected and placed in a plastic box containing fresh untreated bean foliage. The insects were assessed for mortality at days 2, 4, 6, 8 & 10. The percentage of surviving larvae was calculated relative to day 0 (start of assay). Target 5: SEQ ID NO 576; target 10: SEQ ID NO 586; target 15: SEQ ID NO 591; target 16: SEQ ID NO 596; gfp dsRNA: SEQ ID NO 235.
- FIG. 2-EV Effects of ingested target dsRNAs on survival of E. varivestis adults and resistance to snap bean foliar insect damage.
- Target 10 SEQ ID NO 586; target 15: SEQ ID NO 591; target 16: SEQ ID NO 596; gfp dsRNA: SEQ ID NO 235.
- FIG. 1-TC Survival of T. castaneum larvae on artificial diet treated with dsRNA of target 14. Neonate larvae were fed diet based on a flour/milk mix with 1 mg dsRNA target 14. Control was water (without dsRNA) in diet. Four replicates of 10 first instar larvae per replicate were performed for each treatment. The insects were assessed for survival as average percentage means at days 6, 17, 31, 45 and 60. The percentage of surviving larvae was calculated relative to day 0 (start of assay). Error bars represent standard deviations.
- Target TC014 SEQ ID NO 878.
- FIG. 1-MP Effect of ingested target 27 dsRNA on the survival of Myzus persicae nymphs.
- First instars were placed in feeding chambers containing 50 ⁇ l of liquid diet with 2 ⁇ g/ ⁇ l dsRNA (target 27 or gfp dsRNA control).
- Target 27 or gfp dsRNA control Per treatment, 5 feeding chambers were set up with 10 instars in each feeding chamber. Number of survivors were assessed at 8 days post start of bioassay. Error bars represent standard deviations.
- Target MP027 SEQ ID NO 1061
- gfp dsRNA SEQ ID NO 235.
- FIG. 1-NL Survival of Nilaparvata lugens on liquid artificial diet treated with dsRNA.
- Nymphs of the first to second larval stage were fed diet supplemented with 2 mg/ml solution of dsRNA targets in separate bioassays: (a) NL002, NL003, NL005, NL010; (b) NL009, NL016; (c) NL014, NL018; (d) NL013, NL015, NL021.
- Insect survival on targets were compared to diet only and diet with gfp dsRNA control at same concentration. Diet was replaced with fresh diet containing dsRNA every two days. The number of surviving insects were assessed every day
- FIG. 2-NL Survival of Nilaparvata lugens on liquid artificial diet treated with different concentrations of target dsRNA NL002.
- Nymphs of the first to second larval stage were fed diet supplemented with 1, 0.2, 0.08, and 0.04 mg/ml (final concentration) of NL002. Diet was replaced with fresh diet containing dsRNA every two days. The numbers of surviving insects were assessed every day.
- a C. elegans genome wide library was prepared in the pGN9A vector (WO 01/88121) between two identical T7-promoters and terminators, driving its expression in the sense and antisense direction upon expression of the T7 polymerase, which was induced by IPTG.
- This library was transformed into the bacterial strain AB301-105 (DE3) in 96 well plate format. For the genome wide screening, these bacterial cells were fed to the nuclease deficient C. elegans nuc-1(e1392) strain.
- pGN29 negative control, wild type
- the phenotype of the C. elegans nuc-1 (e1392) worms fed with the bacteria producing dsRNA were compared to the phenotype of worms fed with the empty vector (pGN29) and the other controls.
- the worms that were fed with the dsRNA were screened for lethality (acute or larval) lethality for the parent (Po) generation, (embryonic) lethality for the first filial (F1) generation, or for growth retardation of Po as follows: (i) Acute lethality of Po: L1's have not developed and are dead, this phenotype never gives progeny and the well looks quite empty; (ii) (Larval) lethality of Po: Po died in a later stage than L1, this phenotype also never gives progeny. Dead larvae or dead adult worms are found in the wells; (iii) Lethality for F1: L1's have developed until adult stage and are still alive.
- This phenotype has no progeny. This can be due to sterility, embryonic lethality (dead eggs on the bottom of well), embryonic arrest or larval arrest (eventually ends up being lethal): (iv) Arrested in growth and growth retardation/delay: Compared to a well with normal development and normal # of progeny.
- the phenotype of the worms fed with C. elegans dsRNA was compared to the phenotype of C. elegans nuc-1 (e1392) worms fed with the empty vector.
- the present invention encompasses the use of nematode orthologues of the above C. elegans target gene, to control nematode infestation, such as nematode infestation of plants.
- C. elegans lethal sequences were identified and can be used for identifying orthologues in other species and genera.
- the C. elegans lethal sequences can be used to identify orthologous D. melanogasters sequences. That is, each C. elegans sequence can be querried against a public database, such as GenBank, for orthologous sequences in D. melanogaster .
- Potential D. melanogaster orthologues were selected that share a high degree of sequence homology (E value preferably less than or equal to 1E-30) and the sequences are blast reciprocal best hits, the latter means that the sequences from different organisms (e.g. C. elegans and D.
- sequence C from C. elegans is compared against sequences in D. melanogaster using BLAST. If sequence C has the D. melanogaster sequence D as best hit and when D is compared to all the sequences of C. elegans , also turns out to be sequence C, then D and C are reciprocal best hits. This criterium is often used to define orthology, meaning similar sequences of different species, having similar function.
- the D. melanogaster sequence identifiers are represented in Table 1A.
- the sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-LD, which displays Leptintarsa decemlineata target genes including primer sequences and cDNA sequences obtained. These primers were used in respective PCR reactions with the following conditions: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C. The resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR8/GW/topo vector (Cat. No.
- sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-LD and are referred to as the partial sequences.
- the corresponding partial amino acid sequence are represented by the respective SEQ ID NOs as given in Table 3-LD, where the start of the reading frame is indicated in brackets.
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 RibomaxTM Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- the sense T7 template was generated using specific T7 forward and specific reverse primers.
- the sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-LD.
- the conditions in the PCR reactions were as follows: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.
- the anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above.
- the sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-LD.
- the resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO 4 precipitation.
- the generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions.
- the sense strand of the resulting dsRNA for each of the target genes is given in Table 8-LD.
- Table 8-LD displays sequences for preparing ds RNA fragments of Leptinotarsa decemlineata target sequences and concatemer sequences, including primer sequences.
- RNA interference operates through dsRNA fragments
- the target nucleotide sequences of the target genes were cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct.
- the plant vector pK7GWIWG2D(II) was obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement.
- LR recombination reaction was performed by using LR ClonaseTM II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments resulted in a hairpin construct for each of the LD002, LD006, LD007, LD010, LD011, LD014 and LD016 genes, having either the promoter-sense-intron-CmR-intron-antisense orientation, or promoter-antisense-intron-CmR-intron-sense orientation, and wherein the promoter is the plant operable 35S promoter.
- the binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- a double digest with restriction enzymes BsoBI & PvuI was done on LD002 cloned into pCR8/GW/topo (see Example 3A).
- a digest with restriction enzyme BsoBI was done on LD006 cloned into pCR8/GW/topo (see Example 3A).
- the band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) was purified.
- LD002 antisense-intron-CmR-intron-sense
- SEQ ID NO 240 is set forth in SEQ ID NO 240;
- LD006 sense-intron-CmR-intron-antisense is set forth in SEQ ID NO 241;
- LD007 sense-intron-CmR-intron-antisense is set forth in SEQ ID NO 242;
- LD010 antisense-intron-CmR-intron-sense
- SEQ ID NO 243 is set forth in SEQ ID NO 243;
- LD011 (sense-intron-CmR-intron-antisense) is set forth in SEQ ID NO 244;
- LD014 (sense-intron-CmR-intron-antisense) is set forth in SEQ ID NO 245;
- LD016 antisense-intron-CmR-intron-sense
- SEQ ID NO 246 is set forth in SEQ ID NO 246;
- LD027 (sense-intron-CmR-intron-antisense) is set forth in SEQ ID NO 2486.
- Table 9-LD provides complete sequences for each hairpin construct.
- dsRNA targets were compared to diet only or diet with topically applied dsRNA corresponding to a fragment of the GFP (green fluorescent protein) coding sequence (SEQ ID NO 235).
- CPB second-stage larvae fed normally on diet with or without dsRNA for 2 days and molted to the third larval stage. At this new larval stage the CPB were observed to reduce significantly or stop altogether their feeding, with an increase in mortality as a result.
- An alternative bioassay method was employed using potato leaf material rather than artificial diet as food source for CPB.
- Discs of approximately 1.1 cm in diameter (or 0.95 cm 2 ) were cut out off leaves of 2 to 3-week old potato plants using a suitably-sized cork borer.
- Treated leaf discs were prepared by applying 20 ⁇ l of a 10 ng/ ⁇ l solution of target LD002 dsRNA or control gfp dsRNA on the adaxial leaf surface. The leaf discs were allowed to dry and placed individually in 24 wells of a 24-well multiplate (Nunc). A single second-larval stage CPB was placed into each well, which was then covered with tissue paper and a multiwell plastic lid.
- the plate containing the insects and leaf discs were kept in an insect chamber at 28° C. with a photoperiod of 16 h light/8 h dark.
- the insects were allowed to feed on the leaf discs for 2 days after which the insects were transferred to a new plate containing fresh treated leaf discs. Thereafter, the insects were transferred to a plate containing untreated leaf discs every day until day 7. Insect mortality and weight scores were recorded.
- Target LD002 dsRNA severely affected the growth of the larvae after 2 to 3 days whereas the larvae fed with gfp dsRNA at the same concentration developed as normal ( FIG. 3-LD ).
- This example exemplifies the finding that shorter (60 or 100 bp) dsRNA fragments on their own or as concatemer constructs are sufficient in causing toxicity towards the Colorado potato beetle.
- LD014 a target known to induce lethality in Colorado potato beetle, was selected for this example.
- This gene encodes a V-ATPase subunit E (SEQ ID NO 15).
- a 100 base pair fragment, LD014_F1, at position 195-294 on SEQ ID NO 15 (SEQ ID NO 159) and a 60 base pair fragment, LD014_F2, at position 235-294 on SEQ ID NO 15 (SEQ ID NO 160) were further selected. See also Table 7-LD.
- LD014_C1 contained 3 repeats of the 100 base pair fragment described above (SEQ ID NO 159) and LD014_C2 contained 5 repeats of the 60 base pair fragment described above (SEQ ID NO 160). See also Table 7-LD.
- the fragments LD014_F1 and LD014_F2 were synthesized as sense and antisense primers. These primers were annealed to create the double strands DNA molecules prior to cloning. XbaI and XmaI restrictions sites were included at the 5′ and 3′ ends of the primers, respectively, to facilitate the cloning.
- the concatemers were made as 300 base pairs synthetic genes. XbaI and XmaI restrictions sites were included at the 5′ and 3′ ends of the synthetic DNA fragments, respectively, to facilite the cloning.
- the 4 DNA molecules i.e. the 2 single units (LD014_F1 & LD014_F2) and the 2 concatemers (LD014_C1 & LD014_C2), were digested with XbaI and XmaI and subcloned in pBluescriptII SK+ linearised by XbaI and XmaI digests, resulting in recombinant plasmids p1, p2, p3, & p4, respectively.
- Double-stranded RNA production was synthesized using the commercially available kit T7 RibomaxTM Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- the sense T7 template was generated using the specific T7 forward primer oGBM159 and the specific reverse primer oGBM164 (represented herein as SEQ ID NO 204 and SEQ ID NO 205, respectively) in a PCR reaction with the following conditions: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 55° C.
- the anti-sense T7 template was generated using the specific forward primer oGBM163 and the specific T7 reverse primer oGBM160 (represented herein as SEQ ID NO 206 and SEQ ID NO 207, respectively) in a PCR reaction with the same conditions as described above.
- the resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO 4 precipitation.
- the generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, Dnase and Rnase treated, and purified by sodium acetate, following the manufacturer's instructions.
- the sense strand of the resulting dsRNA is herein represented by SEQ ID NO 203.
- the sense T7 template was generated using the specific T7 forward primer oGBM161 and the specific reverse primer oGBM166 (represented herein as SEQ ID NO 209 and SEQ ID NO 210, respectively) in a PCR reaction with the following conditions: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.
- the anti-sense T7 template was generated using the specific forward primer oGBM165 and the specific T7 reverse primer oGBM162 (represented herein as SEQ ID NO 211 and SEQ ID NO 212, respectively) in a PCR reaction with the same conditions as described above.
- the resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO 4 precipitation.
- the generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, Dnase and Rnase treated, and purified by sodium acetate, following the manufacturer's instructions.
- the sense strand of the resulting dsRNA is herein represented by SEQ ID NO 208.
- T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- the recombinant plasmids p3 and p4 containing LD014_C1 & LD014_C2 were linearised with XbaI or XmaI, the two linear fragments for each construct purified and used as template for the in vitro transcription assay, using the T7 promoters flanking the cloning sites.
- Double-stranded RNA was prepared by in vitro transcription using the 17 RiboMAXTM Express RNAi System (Promega).
- the sense strands of the resulting dsRNA for LD014_C1 and LD014_C2 are herein represented by SEQ ID NO 213 and 214, respectively.
- Feeding artificial diet containing intact naked dsRNAs of different targets to L. decemlineata larvae resulted in high larval mortalities at concentrations as low as between 0.1 and 10 ng dsRNA/ ⁇ l as shown in FIG. 5-LD .
- the example provided below highlights the finding that adult insects (and not only insects of the larval stage) are extremely susceptible to orally ingested dsRNA corresponding to target genes.
- targets 2-10 targets 2, 10, 14 and 16 (SEQ ID NO 168, 188, 198 and 220, respectively).
- GFP fragment dsRNA (SEQ ID NO 235) was used as a control. Young adults (2 to 3 days old) were picked at random from our laboratory-reared culture with no bias towards insect gender. Ten adults were chosen per treatment. The adults were prestarved for at least 6 hours before the onset of the treatment. On the first day of treatment, each adult was fed four potato leaf discs (diameter 1.5 cm 2 ) which were pretreated with a topical application of 25 ⁇ l of 0.1 ⁇ g/ ⁇ l target dsRNA (synthesized as described in Example 3A; topical application as described in Example 3E) per disc.
- Double-stranded RNA corresponding to a gfp fragment showed no toxicity towards CPB adults on the day of the final assessment (day 19).
- This experiment clearly showed that the survival of CPB adults was severely reduced only after a few days of exposure to dsRNA when delivered orally. For example, for target 10, on day 5, 5 out of 10 adults were moribund (sick and slow moving); on day 6, 4 out of 10 adults were dead with three of the survivors moribund; on day 9 all adults were observed dead.
- target double-stranded RNAs against insect pests may be broadened to include the two life stages of an insect pest (i.e. larvae and adults) which could cause extensive crop damage, as is the case with the Colorado potato beetle.
- Stably transformed potato plants were obtained using an adapted protocol received through Julie Gilbert at the NSF Potato Genome Project (http://www.potatogenome.org/nsf5). Stem internode explants of potato ‘Line V’ (obtained from the Laboratory of Plant Breeding at PRI Wageningen, the Netherlands) which was derived from the susceptible diploid Solanum tuberosum 6487-9 were used as starting material for transformation.
- In vitro derived explants were inoculated with Agrobacterium tumifaciens C58C 1 Rif R containing the hairpin constructs. After three days co-cultivation the explants were put onto a selective medium containing 100 mg/l Kanamycin and 300 mg/l Timentin. After 6 weeks post-transformation the first putative shoots were removed and rooted on selective medium. Shoots originating from different explants were treated as independent events, shoots originating from the same callus were termed ‘siblings’ until their clonal status can be verified by Southerns, and nodal cuttings of a shoot were referred to as ‘clones’.
- the transgenic status of the rooting shoots was checked either by GFP fluorescence or by plus/minus PCR for the target sequence. Positive shoots were then clonally propagated in tissue culture to ensure enough replicates were available for the Colorado potato beetle assay with the first plants being available to test fourteen weeks post transformation.
- Transgenic potato plants were grown to the 8-12 unfolded leaf stage in a plant growth room chamber with the following conditions: 23 ⁇ 2° C., 60% relative humidity, 16:8 hour light:dark photoperiod.
- the plants were caged by placing a 500 ml bottle upside down over the plant with the neck of the bottle firmly placed in the soil in a pot and base cut open and covered with a fine nylon mesh to permit aeration, reduce condensation inside and prevent larval escape.
- RNA preparation was removed by DNase (Cat. No. 1700, Promega) treatment following the manufacturer's instructions.
- cDNA was generated using a commercially available kit (SuperScriptTM III Reverse Transcriptase, Cat. No. 18080044, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions.
- the sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-PC. These primers were used in respective PCR reactions with the following conditions: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.
- the resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR4/TOPO vector (Cat. No. K4530-20, Invitrogen) and sequenced.
- the sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-PC and are referred to as the partial sequences.
- Table 3-PC provides amino acid sequences of cDNA clones, and the start of the reading frame is indicated in brackets.
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 RibomaxTM Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- the sense T7 template was generated using specific T7 forward and specific reverse primers.
- the sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-PC.
- Table 8-PC provides details for preparing ds RNA fragments of Phaedon cochleariae target sequences, including primer sequences.
- the conditions in the PCR reactions were as follows: 1 minute at 95° C., followed by 20 cycles of 30 seconds at 95° C., 30 seconds at 60° C. and 1 minute at 72° C., followed by 15 cycles of 30 seconds at 95° C., 30 seconds at 50° C. and 1 minute at 72° C. followed by 10 minutes at 72° C.
- the anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above.
- the sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-PC.
- the resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No.
- the generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions.
- the sense strand of the resulting dsRNA for each of the target genes is given in Table 8-PC.
- RNA interference operates through dsRNA fragments
- the target nucleotide sequences of the target genes were cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct.
- the plant vector pK7GWIWG2D(II) was obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement.
- LR recombination reaction was performed by using LR ClonaseTM II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments resulted in a hairpin construct for each of the PC001, PC010, PC014, PC016 and PC027 genes, having the promoter-sense-intron-CmR-intron-antisense orientation, and wherein the promoter is the plant operable 35S promoter.
- the binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- Restriction enzyme digests were carried out on pCR8/GW/TOPO plasmids containing the different targets (see Example 4B): for PC001, a double digest with BsoBI & PvuI; for PC010, a double digest with PvuI & PvuII; for PC014, a triple digest with HincII, PvuI & XhoI; for PC016, a single digest with ApaLI; for PC027, a double digest with AvaI & DrdI.
- the band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) was purified.
- PC001 sense-intron-CmR-intron-antisense
- SEQ ID NO 508 sense-intron-CmR-intron-antisense
- PC010 sense-intron-CmR-intron-antisense is represented in SEQ ID NO 509;
- PC014 sense-intron-CmR-intron-antisense is represented in SEQ ID NO 510;
- PC016 sense-intron-CmR-intron-antisense is represented in SEQ ID NO 511;
- PC027 sense-intron-CmR-intron-antisense is represented in SEQ ID NO 512;
- Table 9-PC provides sequences for each hairpin construct.
- the example provided below is an exemplification of the finding that the mustard leaf beetle (MLB) larvae are susceptible to orally ingested dsRNA corresponding to own target genes.
- MLB mustard leaf beetle
- oilseed rape Brassica napus variety SW Oban; source: Nick Balaam, Sw Seed Ltd., 49 North Road, Abington, Cambridge, CB1 6AS, UK
- the insect cultures were maintained on the same variety of oilseed rape in the insect chamber at 25 ⁇ 2° C. and 60 ⁇ 5% relative humidity with a photoperiod of 16 h light/8 h dark.
- Discs of approximately 1.1 cm in diameter (or 0.95 cm 2 ) were cut out off leaves of 4- to 6-week old rape plants using a suitably-sized cork borer.
- Double-stranded RNA samples were diluted to 0.1 ⁇ g/ ⁇ l in Milli-Q water containing 0.05% Triton X-100.
- Treated leaf discs were prepared by applying 25 ⁇ l of the diluted solution of target PC001, PC003, PC005, PC010, PC014, PC016, PC027 dsRNA and control gfp dsRNA or 0.05% Triton X-100 on the adaxial leaf surface.
- the leaf discs were left to dry and placed individually in each of the 24 wells of a 24-well multiplate containing 1 ml of gellified 2% agar which helps to prevent the leaf disc from drying out.
- the plate (one treatment containing 48 insects) was divided into 4 replicates of 12 insects per replicate (each row).
- the plate containing the insects and leaf discs were kept in an insect chamber at 25 ⁇ 2° C. and 60 ⁇ 5% relative humidity with a photoperiod of 16 h light/8 h dark.
- the insects were fed leaf discs for 2 days after which they were transferred to a new plate containing freshly treated leaf discs. Thereafter, 4 days after the start of the bioassay, the insects from each replicate were collected and transferred to a Petri dish containing untreated fresh oilseed rape leaves. Larval mortality and average weight were recorded at days 2, 4 7, 9 and 11.
- insects from each replicate were transferred to a Petri dish containing abundant untreated leaf material.
- the beetles were assessed as live or dead on days 2, 4, 7, 8, 9, and 11 for target PC010, and 2, 5, 8, 9 and 12 for target PC027.
- Feeding oilseed rape leaf discs containing intact naked dsRNAs of the two different targets, PC010 and PC027, to P. cochleariae larvae resulted in high mortalities at concentrations down to as low as 1 ng dsRNA/ ⁇ l solution, as shown in FIGS. 2 ( a ) and ( b ).
- Arabidopsis thaliana plants were transformed using the floral dip method (Clough and Bent (1998) Plant Journal 16:735-743). Aerial parts of the plants were incubated for a few seconds in a solution containing 5% sucrose, resuspended Agrobacterium tumefaciens strain C58C1 Rif cells from an overnight culture and 0.03% of the surfactant Silwet L-77. After inoculation, plants were covered for 16 hours with a transparent plastic to maintain humidity. To increase the transformation efficiency, the procedure was repeated after one week. Watering was stopped as seeds matured and dry seeds were harvested and cold-treated for two days. After sterilization, seeds were plated on a kanamycin-containing growth medium for selection of transformed plants.
- the selected plants are transferred to soil for optimal T2 seed production.
- Transgenic Arabidopsis thaliana plants are selected by allowing the segregating T2 seeds to germinate on appropriate selection medium. When the roots of these transgenics are well-established they are then transferred to fresh artificial growth medium or soil and allowed to grow under optimal conditions. Whole transgenic plants are tested against nymphs of the green peach aphid ( Myzus persicae ) to show (1) a significant resistance to plant damage by the feeding nymph, (2) increased nymphal mortality, and/or (3) decreased weight of nymphal survivors (or any other aberrant insect development).
- the sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-EV, which displays Epilachna varivetis target genes including primer sequences and cDNA sequences obtained. These primers were used in respective PCR reactions with the following conditions: for EV005 and EV009, 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 50° C. and 1 minute 30 seconds at 72° C., followed by 7 minutes at 72° C.; for EV014, 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 53° C.
- PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR4/TOPO vector (Cat. No. K4530-20, Invitrogen), and sequenced.
- the sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-EV and are referred to as the partial sequences.
- the corresponding partial amino acid sequences are represented by the respective SEQ ID NOs as given in Table 3-EV, where the start of the reading frame is indicated in brackets.
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 RibomaxTM Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- the sense T7 template was generated using specific T7 forward and specific reverse primers.
- the sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-EV.
- the conditions in the PCR reactions were as follows: 1 minute at 95° C., followed by 20 cycles of 30 seconds at 95° C., 30 seconds at 60° C. and 1 minute at 72° C., followed by 15 cycles of 30 seconds at 95° C., 30 seconds at 50° C. and 1 minute at 72° C. followed by 10 minutes at 72° C.
- the anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above.
- the sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-EV.
- the resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No.
- T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions.
- the sense strand of the resulting dsRNA for each of the target genes is given in Table 8-EV.
- the target nucleotide sequences of the target genes are cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct.
- the plant vector pK7GWIWG2D(II) is obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement.
- LR recombination reaction is performed by using LR ClonaseTM II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments result in a hairpin construct for each of the target genes, having the promoter-sense-intron-CmR-intron-antisense orientation, and wherein the promoter is the plant operable 35S promoter.
- the binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- Restriction enzyme digests were carried out on pCR8/GW/TOPO plasmids containing the different targets (see Example B).
- the band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) is purified.
- An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) is added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix is transformed into Top 10 chemically competent cells. Positive clones are selected by restriction digest analyses.
- the example provided below is an exemplification of the finding that the Mexican bean beetle (MBB) larvae are susceptible to orally ingested dsRNA corresponding to own target genes.
- MBB Mexican bean beetle
- RNA samples were diluted to 1 ⁇ g/ ⁇ l in Milli-Q water containing 0.05% Triton X-100.
- Treated leaf discs were prepared by applying 25 ⁇ l of the diluted solution of target Ev005, Ev010, Ev015, Ev016 dsRNA and control gfp dsRNA or 0.05% Triton X-100 on the adaxial leaf surface.
- the leaf discs were left to dry and placed individually in each of the 24 wells of a 24-well multiplate containing 1 ml of gellified 2% agar which helps to prevent the leaf disc from drying out.
- a single neonate MBB larva was placed into each well of a plate, which was then covered with a multiwell plastic lid.
- the plate was divided into 3 replicates of 8 insects per replicate (row).
- the plate containing the insects and leaf discs were kept in an insect chamber at 25 ⁇ 2° C.
- insects were fed on the leaf discs for 2 days after which the insects were transferred to a new plate containing freshly treated leaf discs. Thereafter, 4 days after the start of the bioassay, the insects were transferred to a petriplate containing untreated fresh bean leaves every day until day 10. Insect mortality was recorded at day 2 and every other day thereafter.
- the example provided below is an exemplification of the finding that the Mexican bean beetle adults are susceptible to orally ingested dsRNA corresponding to own target genes.
- test dsRNA from each target Ev010, Ev015 and Ev016 was diluted in 0.05% Triton X-100 to a final concentration of 0.1 ⁇ g/ ⁇ l.
- Bean leaf discs were treated by topical application of 30 ⁇ l of the test solution onto each disc. The discs were allowed to dry completely before placing each on a slice of gellified 2% agar in each well of a 24-well multiwell plate.
- the sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-AG. These primers were used in respective PCR reactions with the following conditions: for AG001, AG005 and AG016, 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 50° C. and 1 minute and 30 seconds at 72° C., followed by 7 minutes at 72° C.; for AG010, 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 2 minutes and 30 seconds at 72° C., followed by 7 minutes at 72° C.; for AG014, 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 55° C.
- PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR8/GW/TOPO vector (Cat. No. K2500-20, Invitrogen) and sequenced.
- the sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-AG and are referred to as the partial sequences.
- the corresponding partial amino acid sequence are represented by the respective SEQ ID NOs as given in Table 3-AG.
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 RibomaxTM Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- the sense T7 template was generated using specific T7 forward and specific reverse primers.
- the sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-AG.
- a touchdown PCR was performed as follows: 1 minute at 95° C., followed by 20 cycles of 30 seconds at 95° C., 30 seconds at 60° C. with a decrease in temperature of 0.5° C. per cycle and 1 minute at 72° C., followed by 15 cycles of 30 seconds at 95° C., 30 seconds at 50° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.
- the anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above.
- the sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-AG.
- the resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO 4 precipitation.
- the generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions.
- the sense strand of the resulting dsRNA for each of the target genes is given in Table 8-AG.
- the target nucleotide sequences of the target genes are cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct.
- the plant vector pK7GWIWG2D(II) is obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement.
- LR recombination reaction is performed by using LR ClonaseTM II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments result in a hairpin construct for each of the target genes, having the promoter-sense-intron-CmR-intron-antisense orientation, and wherein the promoter is the plant operable 35S promoter.
- the binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- Restriction enzyme digests were carried out on pCR8/GW/TOPO plasmids containing the different targets (see Example 6B).
- the band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) is purified.
- An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) is added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix is transformed into Top 10 chemically competent cells. Positive clones are selected by restriction digest analyses.
- Whole plants are sprayed with suspensions of chemically induced bacteria expressing dsRNA prior to feeding the plants to CBW.
- The are grown from in a plant growth room chamber.
- the plants are caged by placing a 500 ml plastic bottle upside down over the plant with the neck of the bottle firmly placed in the soil in a pot and the base cut open and covered with a fine nylon mesh to permit aeration, reduce condensation inside and prevent insect escape.
- CBW are placed on each treated plant in the cage. Plants are treated with a suspension of E. coli AB301-105(DE3) harboring the pGXXX0XX plasmids or pGN29 plasmid.
- Different quantities of bacteria are applied to the plants: for instance 66, 22, and 7 units, where one unit is defined as 109 bacterial cells in 1 ml of a bacterial suspension at optical density value of 1 at 600 nm wavelength. In each case, a total volume of between 1 and 10 ml s sprayed on the plant with the aid of a vaporizer. One plant is used per treatment in this trial. The number of survivors are counted and the weight of each survivor recorded.
- the sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-TC. These primers were used in respective PCR reactions with the following conditions: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 50° C. and 1 minute and 30 seconds at 72° C., followed by 7 minutes at 72° C. (TC001, TC014, TC015); 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 2 minutes and 30 seconds at 72° C., followed by 7 minutes at 72° C. (TC010); 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 53° C.
- PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR8/GW/TOPO vector (Cat. No. K2500-20, Invitrogen), and sequenced.
- the sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-TC and are referred to as the partial sequences.
- the corresponding partial amino acid sequences are represented by the respective SEQ ID NOs as given in Table 3-TC.
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 RibomaxTM Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- the sense T7 template was generated using specific T7 forward and specific reverse primers.
- the sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-TC.
- the conditions in the PCR reactions were as follows: 1 minute at 95° C., followed by 20 cycles of 30 seconds at 95° C., 30 seconds at 60° C. ( ⁇ 0.5° C./cycle) and 1 minute at 72° C., followed by 15 cycles of 30 seconds at 95° C., 30 seconds at 50° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.
- the anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above.
- the sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-TC.
- the resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO 4 precipitation.
- the generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions.
- the sense strand of the resulting dsRNA for each of the target genes is given in Table 8-TC.
- the target nucleotide sequences of the target genes are cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct.
- the plant vector pK7GWIWG2D(II) is obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement.
- LR recombination reaction is performed by using LR ClonaseTM II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments result in a hairpin construct for each of the target genes, having the promoter-sense-intron-CmR-intron-antisense orientation, and wherein the promoter is the plant operable 35S promoter.
- the binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- Restriction enzyme digests were carried out on pCR8/GW/TOPO plasmids containing the different targets (see Example 7B).
- the band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) is purified.
- An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) is added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix is transformed into Top 10 chemically competent cells. Positive clones are selected by restriction digest analyses.
- the example provided below is an exemplification of the finding that the red flour beetle (RFB) larvae are susceptible to orally ingested dsRNA corresponding to own target genes.
- RFB red flour beetle
- Red flour beetles Tribolium castaneum , were maintained at Insect Investigations Ltd. (origin: Imperial College of Science, Technology and Medicine, Silwood Park, Berkshire, UK). Insects were cultured according to company SOP/251/01. Briefly, the beetles were housed in plastic jars or tanks. These have an open top to allow ventilation. A piece of netting was fitted over the top and secured with an elastic band to prevent escape. The larval rearing medium (flour) was placed in the container where the beetles can breed. The stored product beetle colonies were maintained in a controlled temperature room at 25 ⁇ 3° C. with a 16:8 hour light:dark cycle.
- Double-stranded RNA from target TC014 was incorporated into a mixture of flour and milk powder (wholemeal flour: powdered milk in the ratio 4:1) and left to dry overnight.
- Each replicate was prepared separately: 100 ⁇ l of a 10 ⁇ g/ ⁇ l dsRNA solution (1 mg dsRNA) was added to 0.1 g flour/milk mixture. The dried mixture was ground to a fine powder.
- Insects were maintained within Petri dishes (55 mm diameter), lined with a double layer of filter paper. The treated diet was placed between the two filter paper layers. Ten first instar, mixed sex larvae were placed in each dish (replicate). Four replicates were performed for each treatment. Control was Milli-Q water. Assessments (number of survivors) were made on a regular basis. During the trial, the test conditions were 25-33° C. and 20-25% relative humidity, with a 12:12 hour light:dark photoperiod.
- the sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-MP. These primers were used in respective PCR reactions with the following conditions: for MP001, MP002 and MP016, 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 50° C. and 1 minute 30 seconds at 72° C., followed by 7 minutes at 72° C.; for MP027, a touchdown program was used: 10 minutes at 95° C., followed by 10 cycles of 30 seconds at 95° C., 40 seconds at 60° C. with a decrease in temperature of 1° C. per cycle and 1 minute 10 seconds at 72° C., followed by 30 cycles of 30 seconds at 95° C., 40 seconds at 50° C.
- the resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR8/GW/TOPO vector (Cat. No. K2500-20, Invitrogen), and sequenced.
- the sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-MP and are referred to as the partial sequences.
- the corresponding partial amino acid sequences are represented by the respective SEQ ID NOs as given in Table 3-MP.
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 RibomaxTM Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- the sense T7 template was generated using specific T7 forward and specific reverse primers.
- the sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-MP.
- a touchdown PCR was performed as follows: 1 minute at 95° C., followed by 20 cycles of 30 seconds at 95° C., 30 seconds at 55° C. (for MP001, MP002, MP016, MP027 and gfp) or 30 seconds at 50° C. (for MP010) with a decrease in temperature of 0.5° C. per cycle and 1 minute at 72° C., followed by 15 cycles of 30 seconds at 95° C., 30 seconds at 45° C. and 1 minute at 72° C. followed by 10 minutes at 72° C.
- the anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above.
- the sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-MP.
- the resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO 4 precipitation.
- the generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions.
- the sense strand of the resulting dsRNA for each of the target genes is given in Table 8-MP.
- RNA interference operates through dsRNA fragments
- the target nucleotide sequences of the target genes were cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct.
- the plant vector pK7GWIWG2D(II) was obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement.
- LR recombination reaction was performed by using LR ClonaseTM II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments resulted in a hairpin construct for each of the MP001, MP002, MP010, MP016 and MP026 genes, having the promoter-sense-intron-CmR-intron-antisense orientation and wherein the promoter is the plant operable 35S promoter.
- the binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- a digest with restriction enzyme Alw441 was done for all the targets cloned into pCR8/GW/topo (see Example 8B).
- the band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) was purified.
- An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) was added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix was transformed into Top 10 chemically competent cells. Positive clones were selected by restriction digest analysis.
- MP001 sense-intron-CmR-intron-antisense is represented in SEQ ID NO 1066;
- MP002 sense-intron-CmR-intron-antisense is represented in SEQ ID NO 1067;
- MP010 sense-intron-CmR-intron-antisense is represented in SEQ ID NO 1068;
- MP016 sense-intron-CmR-intron-antisense is represented in SEQ ID NO 1069;
- MP027 sense-intron-CmR-intron-antisense is represented in SEQ ID NO 1070.
- Table 9-MP provides complete sequences for each hairpin construct.
- Liquid artificial diet for the green peach aphid, Myzus persicae was prepared based on the diet suitable for pea aphids ( Acyrthosiphon pisum ), as described by Febvay et al. (1988) [Influence of the amino acid balance on the improvement of an artificial diet for a biotype of Acyrthosiphon pisum (Homoptera: Aphididae). Can. J. Zool. 66: 2449-2453], but with some modifications.
- the amino acids component of the diet was prepared as follows: in mg/100 ml, alanine 178.71, beta-alanine 6.22, arginine 244.9, asparagine 298.55, aspartic acid 88.25, cysteine 29.59, glutamic acid 149.36, glutamine 445.61, glycine 166.56, histidine 136.02, isoleucine 164.75, leucine 231.56, lysine hydrochloride 351.09, methionine 72.35, ornithine (HCl) 9.41, phenylalanine 293, proline 129.33, serine 124.28, threonine 127.16, tryptophane 42.75, tyrosine 38.63, L-valine 190.85.
- the amino acids were dissolved in 30 ml Milli-Q H 2 O except for tyrosine which was first dissolved in a few drops of 1 M HCl before adding to the amino acid mix.
- the vitamin mix component of the diet was prepared as a 5 ⁇ concentrate stock as follows: in mg/L, amino benzoic acid 100, ascorbic acid 1000, biotin 1, calcium panthothenate 50, choline chloride 500, folic acid 10, myoinositol 420, nicotinic acid 100, pyridoxine hydrochloride 25, riboflavin 5, thiamine hydrochloride 25.
- the riboflavin was dissolved in 1 ml H 2 O at 50° C. and then added to the vitamin mix stock.
- the vitamin mix was aliquoted in 20 ml per aliquot and stored at ⁇ 20° C. One aliquot of vitamin mix was added to the amino acid solution. Sucrose and MgSO 4 .7H 2 O was added with the following amounts to the mix: 20 g and 242 mg, respectively.
- Trace metal stock solution was prepared as follows: in mg/100 ml, CuSO 4 .5H 2 O 4.7, FeCl 3 .6H 2 O 44.5, MnCl 2 .4H 2 O 6.5, NaCl 25.4, ZnCl 2 8.3.
- Ten ml of the trace metal solution and 250 mg KH 2 PO 4 was added to the diet and Milli-Q water was added to a final liquid diet volume of 100 ml. The pH of the diet was adjusted to 7 with 1 M KOH solution.
- the liquid diet was filter-sterilised through an 0.22 ⁇ m filter disc (Millipore).
- Green peach aphids Myzus persicae ; source: Dr. Rachel Down, Insect & Pathogen Interactions, Central Science Laboratory, Sand Hutton, York, YO41 1LZ, UK
- 4- to 6-week-old oilseed rape Brassica napus variety SW Oban; source: Nick Balaam, Sw Seed Ltd., 49 North Road, Abington, Cambridge, CB1 6AS, UK
- aluminium-framed cages containing 70 ⁇ m mesh in a controlled environment chamber with the following conditions: 23 ⁇ 2° C. and 60 ⁇ 5% relative humidity, with a 16:8 hours light:dark photoperiod.
- a feeding chamber comprised of 10 first instar nymphs placed in a small Petri dish (with diameter 3 cm) covered with a single layer of thinly stretched parafilm M onto which 50 ⁇ l of diet was added.
- the chamber was sealed with a second layer of parafilm and incubated under the same conditions as the adult cultures. Diet with dsRNA was refreshed every other day and the insects' survival assessed on day 8 i.e. 8 th day post bioassay start. Per treatment, 5 bioassay feeding chambers (replicates) were set up simultaneously. Test and control (gfp) dsRNA solutions were incorporated into the diet to a final concentration of 2 ⁇ g/ ⁇ l. The feeding chambers were kept at 23 ⁇ 2° C. and 60 ⁇ 5% relative humidity, with a 16:8 hours light:dark photoperiod. A Mann-Whitney test was determined by GraphPad Prism version 4 to establish whether the medians do differ significantly between target 27 (MP027) and gfp dsRNA.
- Arabidopsis thaliana plants were transformed using the floral dip method (Clough and Bent (1998) Plant Journal 16:735-743). Aerial parts of the plants were incubated for a few seconds in a solution containing 5% sucrose, resuspended Agrobacterium tumefaciens strain C58C1 Rif cells from an overnight culture and 0.03% of the surfactant Silwet L-77. After inoculation, plants were covered for 16 hours with a transparent plastic to maintain humidity. To increase the transformation efficiency, the procedure was repeated after one week. Watering was stopped as seeds matured and dry seeds were harvested and cold-treated for two days. After sterilization, seeds were plated on a kanamycin-containing growth medium for selection of transformed plants.
- the selected plants are transferred to soil for optimal T2 seed production.
- Transgenic Arabidopsis thaliana plants are selected by allowing the segregating T2 seeds to germinate on appropriate selection medium. When the roots of these transgenics are well-established they are then transferred to fresh artificial growth medium or soil and allowed to grow under optimal conditions. Whole transgenic plants are tested against nymphs of the green peach aphid ( Myzus persicae ) to show (1) a significant resistance to plant damage by the feeding nymph, (2) increased nymphal mortality, and/or (3) decreased weight of nymphal survivors (or any other aberrant insect development).
- Nilaparvata lugens (Brown Plant Hopper)
- RNA of Nilaparvata lugens source: Dr. J. A. Gatehouse, Dept. Biological Sciences, Durham University, UK
- cDNA was generated using a commercially available kit (SuperScriptTM III Reverse Transcriptase, Cat No. 18080044, Invitrogen, Rockville, Md., USA) following the manufacturer's protocol.
- the sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-NL. These primers were used in respective PCR reactions with the following conditions: for NL001: 5 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.: for NL002: 3 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.; for NL003: 3 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 61° C.
- NL004 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 51° C. and 1 minute at 72° C.
- NL005 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.
- NL006 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 55° C.
- RNA of Nilaparvata lugens source: Dr. J. A. Gatehouse, Dept. Biological Sciences, Durham University, UK
- cDNA was generated using a commercially available kit (SuperScriptTM III Reverse Transcriptase, Cat No. 18080044, Invitrogen, Rockville, Md., USA) following the manufacturer's protocol.
- a partial cDNA sequence, NL023, was amplified from Nilaparvata lugens cDNA which corresponded to a Nilaparvata lugens EST sequence in the public database Genbank with accession number CAH65679.2.
- cDNA sequences comprising a portion of the NL023 gene, a series of PCR reactions with EST based specific primers were performed using PerfectShotTM ExTaq (Cat No. RR005A, Takara Bio Inc.) following the manafacturer's protocol.
- the specific primers oGBKW002 and oGBKW003 (represented herein as SEQ ID NO 1157 and SEQ ID NO 1158, respectively) were used in two independent PCR reactions with the following conditions: 3 minutes at 95° C., followed by 30 cycles of 30 seconds at 95° C., 30 seconds at 56° C. and 2 minutes at 72° C., followed by 10 minutes at 72° C.
- the resulting PCR products were analyzed on agarose gel, purified (QIAquick® Gel Extraction Kit; Cat. No. 28706, Qiagen), cloned into the pCR4-TOPO vector (Cat No. K4575-40, Invitrogen) and sequenced.
- the consensus sequence resulting from the sequencing of both PCR products is herein represented by SEQ ID NO 1111 and is referred to as the partial sequence of the NL023 gene.
- the corresponding partial amino acid sequence is herein represented as SEQ ID NO 1112.
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 RibomaxTM Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- the sense T7 template was generated using specific T7 forward and specific reverse primers.
- the sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-NL.
- the conditions in the PCR reactions were as follows: for NL001 & NL002: 4 minutes at 94° C., followed by 35 cycles of 30 seconds at 94° C., 30 seconds at 60° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.; for NL003: 4 minutes at 94° C., followed by 35 cycles of 30 seconds at 94° C., 30 seconds at 66° C.
- the anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above.
- the sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-NL.
- the resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen).
- RNA peppet is washed twice in 70% ethanol.
- the sense strand of the resulting dsRNA for each of the target genes is given in Table 8-NL.
- the template DNA used for the PCR reactions with T7 primers on the green fluorescent protein (gfp) control was the plasmid pPD96.12 (the Fire Lab, http://genome-www.stanford.edu/group/fire/), which contains the wild-type gfp coding sequence interspersed by 3 synthetic introns.
- Double-stranded RNA was synthesized using the commercially available kit T7 RiboMAXTM Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- the sense T7 template was generated using the specific T7 FW primer oGAU183 and the specific RV primer oGAU182 (represented herein as SEQ ID NO 236 and SEQ ID NO 237, respectively) in a PCR reaction with the following conditions: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.
- the anti-sense T7 template was generated using the specific FW primer oGAU181 and the specific T7 RV primer oGAU184 (represented herein as SEQ ID NO 238 and SEQ ID NO 239, respectively) in a PCR reaction with the same conditions as described above.
- RNA peppet is washed twice in 70% ethanol.
- SEQ ID NO 235 The sense strands of the resulting dsRNA is herein represented by SEQ ID NO 235.
- Liquid artificial diet for the rice brown planthopper, Nilaparvata lugens , was prepared as described by Koyama (1988) [Artificial rearing and nutritional physiology of the planthoppers and leafhoppers (Homoptera: Delphacidae and Deltocephalidae) on a holidic diet. JARQ 22: 20-27], but with a modification in final concentration of diet component sucrose: 14.4% (weight over volume) was used. Diet components were prepared as separate concentrates: 10 ⁇ mineral stock (stored at 4° C.), 2 ⁇ amino acid stock (stored at ⁇ 20° C.) and 10 ⁇ vitamin stock (stored at ⁇ 20° C.). The stock components were mixed immediately prior to the start of a bioassay to 4/3 ⁇ concentration to allow dilution with the test dsRNA solution (4 ⁇ concentration), pH adjusted to 6.5, and filter-sterilised into approximately 500 ⁇ l aliquots.
- Rice brown planthopper ( Nilaparvata lugens ) was reared on two-to-three month old rice ( Oryza saliva cv Taichung Native 1) plants in a controlled environment chamber: 27 ⁇ 2° C., 80% relative humidity, with a 16:8 hours light:dark photoperiod.
- a feeding chamber comprised 10 first or second instar nymphs placed in a small petri dish (with diameter 3 cm) covered with a single layer of thinly stretched parafilm M onto which 50 ⁇ l of diet was added. The chamber was sealed with a second layer of parafilm and incubated under the same conditions as the adult cultures but with no direct light exposure. Diet with dsRNA was refreshed every other day and the insects' survival assessed daily.
- bioassay feeding chambers (replicates) were set up simultaneously.
- Test and control (gfp) dsRNA solutions were incorporated into the diet to a final concentration of 2 mg/ml.
- the feeding chambers were kept at 27 ⁇ 2° C., 80% relative humidity, with a 16:8 hours light:dark photoperiod.
- Insect survival data were analysed using the Kaplan-Meier survival curve model and the survival between groups were compared using the logrank test (Prism version 4.0).
- Tables 10-NL(a)-d) show a summary of the survival of Nilaparvata lugens on artificial diet supplemented with 2 mg/ml (final concentration) of the following targets; in Table 10-NL(a): NL002, NL003, NL005, NL010; in Table 10-NL(b): NL009, NL016; in Table 10-NL(c): NL014, NL018; and in Table 10-NL(d): NL013, NL015, NL021.
- Table 11-NL summarizes the survival of Nilaparvata lugens artificial diet feeding trial supplemented with 1, 0.2, 0.08, & 0.04 mg/ml (final concentration) of target NL002.
- the sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-CS. These primers were used in respective PCR reactions with the following conditions: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.
- the resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR4/TOPO vector (Cat. No. K2500-20, Invitrogen), and sequenced.
- the sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-CS and are referred to as the partial sequences.
- the corresponding partial amino acid sequences are represented by the respective SEQ ID NOs as given in Table 3-CS.
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 RibomaxTM Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- the sense T7 template was generated using specific T7 forward and specific reverse primers.
- the sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-CS.
- the conditions in the PCR reactions were as follows: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.
- the anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above.
- the sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-CS.
- the resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO 4 precipitation.
- the generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions.
- the sense strand of the resulting dsRNA for each of the target genes is given in Table 8-CS.
- the target nucleotide sequences of the target genes are cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct.
- the plant vector pK7GWIWG2D(II) is obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement.
- LR recombination reaction is performed by using LR ClonaseTM II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments result in a hairpin construct for each of the target genes, having the promoter-sense-intron-CmR-intron-antisense orientation, and wherein the promoter is the plant operable 35S promoter.
- the binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- Restriction enzyme digests were carried out on pCR8/GW/TOPO plasmids containing the different targets (see Example 10B).
- the band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) is purified.
- An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) is added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix is transformed into Top 10 chemically competent cells. Positive clones are selected by restriction digest analyses.
- the same artificial diet is used for the bioassays but in this case the diet is poured equally in 24 multiwell plates, with each well containing 1 ml diet.
- the test formulations are applied to the diet's surface (2 cm 2 ), at the rate of 50 ⁇ l of 1 ⁇ g/ ⁇ l dsRNA of target.
- the dsRNA solutions are left to dry and two first instar moth larvae are placed in each well. After 7 days, the larvae are transferred to fresh treated diet in multiwell plates. At day 14 (i.e. 14 days post bioassay start) the number of live and dead insects is recorded and examined for abnormalities. Twenty-four larvae in total are tested per treatment.
- An alternative bioassay is performed in which treated rice leaves are fed to neonate larvae of the rice striped stem borer.
- Small leaf sections of Indica rice variety Taichung native 1 are dipped in 0.05% Triton X-100 solution containing 1 ⁇ g/ ⁇ l of target dsRNA, left to dry and each section placed in a well of a 24 multiwell plate containing gellified 2% agar.
- Two neonates are transferred from the rearing tray to each dsRNA treated leaf section (24 larvae per treatment). After 4 and 8 days, the larvae are transferred to fresh treated rice leaf sections. The number of live and dead larvae are assessed on days 4, 8 and 12; any abnormalities are also recorded.
- the sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-PX. These primers were used in respective PCR reactions with the following conditions: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 50° C. and 1 minute and 30 seconds at 72° C., followed by 7 minutes at 72° C. (for PX001, PX009, PX015, PX016); 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 2 minute and 30 seconds at 72° C., followed by 7 minutes at 72° C. (for PX010).
- the resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR8/GW/TOPO vector (Cat. No. K2500-20, Invitrogen) and sequenced.
- the sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-PX and are referred to as the partial sequences.
- the corresponding partial amino acid sequence are represented by the respective SEQ ID NOs as given in Table 3-PX.
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 RibomaxTM Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- the sense T7 template was generated using specific T7 forward and specific reverse primers.
- the sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-PX.
- the conditions in the PCR reactions were as follows: 1 minute at 95° C., followed by 20 cycles of 30 seconds at 95° C., 30 seconds at 60° C. ( ⁇ 0.5° C./cycle) and 1 minute at 72° C., followed by 15 cycles of 30 seconds at 95° C., 30 seconds at 50° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.
- the anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above.
- the sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-PX.
- the resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO 4 precipitation.
- the generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions.
- the sense strand of the resulting dsRNA for each of the target genes is given in Table 8-PX.
- the target nucleotide sequences of the target genes are cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct.
- the plant vector pK7GWIWG2D(II) is obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement.
- LR recombination reaction is performed by using LR ClonaseTM II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments result in a hairpin construct for each of the target genes, having the promoter-sense-intron-CmR-intron-antisense orientation, and wherein the promoter is the plant operable 35S promoter.
- the binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- Restriction enzyme digests were carried out on pCR8/GW/TOPO plasmids containing the different targets (see Example 11B).
- the band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) is purified.
- An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) is added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix is transformed into Top 10 chemically competent cells. Positive clones are selected by restriction digest analyses.
- Diamond-back moths Plutella xylostella , were maintained at Insect Investigations Ltd. (origin: Newcastle University, Newcastle-upon-Tyne, UK). The insects were reared on cabbage leaves. First instar, mixed sex larvae (approximately 1 day old) were selected for use in the trial. Insects were maintained in Eppendorf tubes (1.5 ml capacity). Commercially available Diamond-back moth diet (Bio-Serv, NJ, USA), prepared following the manafacturer's instructions, was placed in the lid of each tube (0.25 ml capacity, 8 mm diameter). While still liquid, the diet was smoother over to remove excess and produce an even surface.
- test formulations are applied to the diet's surface, at the rate of 25 ⁇ l undiluted formulation (1 ⁇ g/ ⁇ l dsRNA of targets) per replicate.
- the test formulations are allowed to dry and one first instar moth larva is placed in each tube.
- the larva is placed on the surface of the diet in the lid and the tube carefully closed.
- the tubes are stored upside down, on their lids such that each larva remains on the surface of the diet. Twice weekly the larvae are transferred to new Eppendorf tubes with fresh diet.
- the insects are provided with treated diet for the first two weeks of the trial and thereafter with untreated diet.
- the sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-AD. These primers were used in respective PCR reactions with the following conditions: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 50° C. and 1 minute and 30 seconds at 72° C., followed by 7 minutes at 72° C.
- the resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR8/GW/topo vector (Cat. No. K2500 20, Invitrogen) and sequenced.
- the sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-AD and are referred to as the partial sequences.
- the corresponding partial amino acid sequence are represented by the respective SEQ ID NOs as given in Table 3-AD.
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 RibomaxTM Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- the sense T7 template was generated using specific T7 forward and specific reverse primers.
- the sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-AD.
- the conditions in the PCR reactions were as follows: 1 minute at 95° C., followed by 20 cycles of 30 seconds at 95° C., 30 seconds at 60° C. ( ⁇ 0.5° C./cycle) and 1 minute at 72° C., followed by 15 cycles of 30 seconds at 95° C., 30 seconds at 50° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.
- the anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above.
- the sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-AD.
- the resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO 4 precipitation.
- the generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions.
- the sense strand of the resulting dsRNA for each of the target genes is given in Table 8-AD.
- the target nucleotide sequences of the target genes are cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct.
- the plant vector pK7GWIWG2D(II) is obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement.
- LR recombination reaction is performed by using LR ClonaseTM II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments result in a hairpin construct for each of the target genes, having the promoter-sense-intron-CmR-intron-antisense orientation, and wherein the promoter is the plant operable 35S promoter.
- the binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- Restriction enzyme digests were carried out on pCR8/GW/TOPO plasmids containing the different targets (see Example 12B).
- the band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) is purified.
- An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) is added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix is transformed into Top 10 chemically competent cells. Positive clones are selected by restriction digest analyses.
- Double-stranded RNA is mixed with a wheat-based pelleted rodent diet (rat and mouse standard diet, B & K Universal Ltd., Grimston, Aldbrough, Hull, UK).
- the diet, BK001P contains the following ingredients in descending order by weight: wheat, soya, wheatfeed, barley, pellet binder, rodent 5 vit min, fat blend, dicalcium phosphate, mould carb.
- the pelleted rodent diet is finely ground and heat-treated in a microwave oven prior to mixing, in order to inactivate any enzyme components. All rodent diet is taken from the same batch in order to ensure consistency.
- the ground diet and dsRNA are mixed thoroughly and formed into small pellets of equal weight, which are allowed to dry overnight at room temperature.
- Double-stranded RNA samples from targets and gfp control at concentrations 10 ⁇ g/ ⁇ l were applied in the ratio 1 g ground diet plus 1 ml dsRNA solution, thereby resulting in an application rate of 10 mg dsRNA per g pellet.
- Pellets are replaced weekly. The insects are provided with treated pellets for the first three weeks of the trial. Thereafter untreated pellets are provided. Insects are maintained within lidded plastic containers (9 cm diameter, 4.5 cm deep), ten per container. Each arena contains one treated bait pellet and one water source (damp cotton wool ball), each placed in a separate small weigh boat. The water is replenished ad lib throughout the experiment.
- Acute lethal or lethal C01G8.5 CG10701 Ortholog of the ERM family of cytoskeletal linkers Acute lethal or lethal C01H6.5 CG33183 Nuclear hormone receptor that is required in all larval molts
- Acute lethal or lethal C02C6.1 CG18102 Member of the DYNamin related gene class Acute lethal or lethal C03D6.8 CG6764
- Large ribosomal subunit L24 protein (Rlp24p) Acute lethal or lethal C04F12.4 CG6253 rpl-14 encodes a large ribosomal subunit L14 protein.
- Acute lethal or lethal C04H5.6 CG10689 Product with RNA helicase activity (EC:2.7.7.-) involved in nuclear Embryonic lethal or sterile mRNA splicing, via spliceosome which is a component of the spliceosome complex C13B9.3 CG14813 Delta subunit of the coatomer (COPI) complex
- COPI coatomer
- PC005 349 AAGAACACTGAAGCCAGAAGGAAGGGAAGGCATTGTGG 25958948 ( Curculio glandium )
- PC005 350 AATGAAATCAACGAAATCGCCAACAC 92979160 ( Drosophila grimshawi ) 92232072 ( Drosophila willistoni )
- PC005 351 ATGGAGTACATCCACAAGAAGAAGGC 15454802 ( Drosophila melanogaster )
- PC005 352 CAAGATGCTGTCTGACCAGGC 67872905 ( Drosophila pseudoobscura )
- PC005 353 CGCCTCCTCAAAAAGTACAGGGAGGC 75471260 ( Tribolium castaneum )
- PC005 354 CGTATCGCCACCAAGAAGCAG 68267374 ( Drosophila simulans )
- PC005 355 CTGTACATGAAAGCGAAGGGTAA 25957246 ( Carabus granulatus )
- PEST 9713 ( Manduca sexta ) 110240379 ( Spodoptera frugiperda ) PX016 2259 GCCTACCAGTGCGAGAAACACGTGTTGGTAATCTTGACCGAC 101406307 ( Plodia interpunctella ) ATGTC PX016 2260 GGCAGATCTACCCGCCGGTGAA 31206154 ( Anopheles gambiae str. PEST) PX016 2261 GGCGAGGAGGCGCTCACGCCCGACGA 31206154 ( Anopheles gambiae str.
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Abstract
The present invention relates to methods for controlling pest infestation using double standard RNA molecules. The invention provides methods for making transgenic plants that express the double stranded RNA molecules, as well as pesticidal agents and commodity products produced by the inventive plants.
Description
- The present invention relates to the field of double-stranded RNA (dsRNA)-mediated gene silencing in insect species. More particularly, the present invention relates to genetic constructs designed for the expression of dsRNA corresponding to novel target genes. These constructs are particularly useful in RNAi-mediated plant pest control. The invention further relates to methods for controlling insects, methods for preventing insect infestation and methods for down-regulating gene expression in insects using RNAi. The invention also relates to transgenic plants resistant to insect infestation.
- The environment is replete with pests and numerous methods have attempted to control pests infestations of plants. Commercial crops are often the targets of insect attack. Substantial progress has been made in the last few decades towards developing more efficient methods and compositions for controlling insect infestation in plants.
- Chemical pesticides have been very effective in eradicating pest infestation. However, there are several disadvantages to using chemical pesticidal agents. Not only are they potentially detrimental to the environment, but they are not selective and are harmful to various crops and non-target fauna. Chemical pesticides persist in the environment and generally are slow to be metabolized, if at all. They accumulate in the food chain, and particularly in the higher predator species where they can act as mutagens and/or carcinogens to cause irreversible and deleterious genetic modifications. There has thus been continued controversy in the use of chemical insecticides to combat crop pests. They can rapidly develop resistance against these insecticides because of repetitive usage of the same insecticide or of insecticides having the same mode of action, and because accumulation also results in the development of resistance to the agents in species higher up the evolutionary ladder.
- Control of insect pests on agronomically important crops is important, particularly insect pests which damage plants belonging to the Solanaceae family, especially potato (Solanum tuberosum), but also tomato (Solanum lycopersicum), eggplant (Solanum melongena), capsicums (Solanum capsicum), and nightshade (for example, Solanum aculeastrum, S. bulbocastanum, S. cardiophyllum, S. douglasii, S. dulcamara, S. lanceolatum, S. robustum, and S. triquetrum), particularly the control of coleopteran pests.
- Biological control using extract from neem seed has been shown to work against coleopteran pests of vegetables. Commercially available neem-based insecticides have azadirachtin as the primary active ingredient. These insecticides are applicable to a broad spectrum of insects. They act as insect growth regulator; azadirachtin prevents insects from molting by inhibiting production of an insect hormone, ecdysone.
- Biological control using protein Cry3A from Bacillus thuringiensis varieties tenebrionis and san diego, and derived insecticidal proteins are alternatives to chemical control. The Bt toxin protein is effective in controlling Colorado potato beetle larvae either as formulations sprayed onto the foliage or expressed in the leaves of potatoes.
- An alternative biological agent is dsRNA. Over the last few years, down-regulation of genes (also referred to as “gene silencing”) in multicellular organisms by means of RNA interference or “RNAi” has become a well-established technique.
- RNA interference or “RNAi” is a process of sequence-specific down-regulation of gene expression (also referred to as “gene silencing” or “RNA-mediated gene silencing”) initiated by double-stranded RNA (dsRNA) that is complementary in sequence to a region of the target gene to be down-regulated (Fire, A. Trends Genet. Vol. 15, 358-363, 1999; Sharp, P. A. Genes Dev. Vol. 15, 485-490, 2001).
- Over the last few years, down-regulation of target genes in multicellular organisms by means of RNA interference (RNAi) has become a well established technique. Reference may be made to International Applications WO 99/32619 (Carnegie Institution) and WO 00/01846 (by Applicant).
- DsRNA gene silencing finds application in many different areas, such as for example dsRNA mediated gene silencing in clinical applications (WO2004/001013) and in plants. In plants, dsRNA constructs useful for gene silencing have also been designed to be cleaved and to be processed into short interfering RNAs (siRNAs).
- RNAi has also been proposed as a means of protecting plants against plant parasitic nematodes, i.e. by expressing in the plant (e.g. in the entire plant, or in a part, tissue or cell of a plant) one or more nucleotide sequences that form a dsRNA fragment that corresponds to a target gene in the plant parasitic nematode that is essential for its growth, reproduction and/or survival. Reference may be made to the International Application WO 00/01846 (by Applicant) and U.S. Pat. No. 6,506,559 (based on WO 99/32619).
- Although the technique of RNAi has been generally known in the art in plants, C. elegans and mammalian cells for some years, to date little is known about the use of RNAi to down-regulate gene expression in insects. Since the filing and publication of the WO 00/01846 and WO 99/32619 applications, only few other applications have been published that relate to the use of RNAi to protect plants against insects. These include the International Applications WO 01/37654 (DNA Plant Technologies), WO 2005/019408 (Bar Ilan University), WO 2005/049841 (CSIRO, Bayer Cropscience), WO 05/047300 (University of Utah Research foundation), and the US application 2003/00150017 (Mesa et al.).
- The present invention provides target genes and constructs useful in the RNAi-mediated insect pest control, especially the control of insect plant pathogens. The present invention also provides methods for controlling insect pest infestation by repressing, delaying, or otherwise reducing target gene expression within a particular insect pest.
- The present invention describes a novel non-compound, non-protein based approach for the control of insect crop pests. The active ingredient is a nucleic acid, a double-stranded RNA (dsRNA), which can be used as an insecticidal formulation. In another embodiment, the dsRNA can be expressed constitutively in the host plant, plant part, plant cell or seed to protect the plant against chewing insects especially coleopterans such as beetles. The sequence of the dsRNA corresponds to part or whole of an essential insect gene and causes downregulation of the insect target via RNA interference (RNAi). As a result of the downregulation of mRNA, the dsRNA prevents expression of the target insect protein and hence causes death, growth arrest or sterility of the insect.
- The methods of the invention can find practical application in any area of technology where it is desirable to inhibit viability, growth, development or reproduction of the insect, or to decrease pathogenicity or infectivity of the insect. The methods of the invention further find practical application where it is desirable to specifically down-regulate expression of one or more target genes in an insect. Particularly useful practical applications include, but are not limited to, protecting plants against insect pest infestation.
- In accordance with one embodiment the invention relates to a method for controlling insect growth on a cell or an organism, or for preventing insect infestation of a cell or an organism susceptible to insect infection, comprising contacting insects with a double-stranded RNA, wherein the double-stranded RNA comprises annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of the nucleotide sequence of an insect target gene, whereby the double-stranded RNA is taken up by the insect and thereby controls growth or prevents infestation.
- The present invention therefore provides isolated novel nucleotide sequences of insect target genes, said isolated nucleotide sequences comprising at least one nucleic acid sequence selected from the group comprising:
- (i) sequences represented by any of
SEQ ID NOs - (ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of
SEQ ID NOs - (iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by
SEQ ID NOs - or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 49 to 158, 275 to 472, 533 to 575, 621 to 767, 813 to 862, 908 to 1040, 1161 to 1571, 1730 to 2039, 2120 to 2338, 2384 to 2460, or a complement thereof,
- said nucleic acid sequences being useful for preparing the double stranded RNAs of the invention for controlling insect growth.
- “Controlling pests” as used in the present invention means killing pests, or preventing pests to develop, or to grow or preventing pests to infect or infest. Controlling pests as used herein also encompasses controlling pest progeny (development of eggs). Controlling pests as used herein also encompasses inhibiting viability, growth, development or reproduction of the pest, or to decrease pathogenicity or infectivity of the pest. The compounds and/or compositions described herein, may be used to keep an organism healthy and may be used curatively, preventively or systematically to control pests or to avoid pest growth or development or infection or infestation.
- Particular pests envisaged in the present invention are plant pathogenic insect pests. “Controlling insects” as used herein thus also encompasses controlling insect progeny (such as development of eggs). Controlling insects as used herein also encompasses inhibiting viability, growth, development or reproduction of the insect, or decreasing pathogenicity or infectivity of the insect. In the present invention, controlling insects may inhibit a biological activity in a insect, resulting in one or more of the following attributes: reduction in feeding by the insect, reduction in viability of the insect, death of the insect, inhibition of differentiation and development of the insect, absence of or reduced capacity for sexual reproduction by the insect, muscle formation, juvenile hormone formation, juvenile hormone regulation, ion regulation and transport, maintenance of cell membrane potential, amino acid biosynthesis, amino acid degradation, sperm formation, pheromone synthesis, pheromone sensing, antennae formation, wing formation, leg formation, development and differentiation, egg formation, larval maturation, digestive enzyme formation, haemolymph synthesis, haemolymph maintenance, neurotransmission, cell division, energy metabolism, respiration, apoptosis, and any component of eukaryotic cells cytoskeletal structure, such as, for example, actins and tubulins. The compounds and/or compositions described herein, may be used to keep an organism healthy and may be used curatively, preventively or systematically to control a insect or to avoid insect growth or development or infection or infestation. Thus, the invention may allow previously susceptible organisms to develop resistance against infestation by the insect organism.
- The expression “complementary to at least part of” as used herein means that the nucleotide sequence is fully complementary to the nucleotide sequence of the target over more than two nucleotides, for instance over at least 15, 16, 17, 18, 19, 20, 21, 22, 23, 24 or more contiguous nucleotides.
- According to a further embodiment, the invention relates to a method for down-regulating expression of a target gene in an insect, comprising contacting said insect with a double-stranded RNA, wherein the double-stranded RNA comprises annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of the nucleotide sequence of the insect target gene to be down-regulated, whereby the double-stranded RNA is taken up into the insect and thereby down-regulates expression of the insect target gene.
- Whenever the term “a” is used within the context of “a target gene”, this means “at least one” target gene. The same applies for “a” target organism meaning “at least one” target organism, and “a” RNA molecule or host cell meaning “at least one” RNA molecule or host cell. This is also detailed further below.
- According to one embodiment, the methods of the invention rely on uptake by the insect of double-stranded RNA present outside of the insect (e.g. by feeding) and does not require expression of double-stranded RNA within cells of the insect. In addition, the present invention also encompasses methods as described above wherein the insect is contacted with a composition comprising the double-stranded RNA.
- The invention further provides a method for down-regulating expression of at least one target gene in a target organism (which is capable of ingesting a plant, plant part, plant cell or seeds) comprising feeding a plant, plant part, plant cell or seed to the target organism which plant, plant part, plant cell or seed expresses double-stranded RNA.
- In a more preferred aspect, the invention provides a method for down-regulating expression of at least one target gene in a target organism (which is capable of ingesting a host cell, or extracts thereof) comprising feeding a hostplant, plant part, plant cell or seed to the target organism which hostplant, plant part, plant cellcell or seed expresses a double-stranded RNA molecule comprising a nucleotide sequence complementary to or representing the RNA equivalent of at least part of the nucleotide sequence of the at least one target gene, whereby the ingestion of the host cell, host plant, plant part, plant cell or seed by the target organism causes and/or leads to down-regulation of expression of the at least one target gene.
- The invention provides for use of a plant, plant part, plant cell or seed as defined herein for down regulation of expression of an insect target gene. In more detailed terms, the invention provides for use of a host cell as defined herein and/or an RNA molecule comprising a nucleotide sequence that is the RNA complement of or that represents the RNA equivalent of at least part of the nucleotide sequence of a target gene from a target organism, as produced by transcription of a nucleic acid molecule in a plant, plant part, plant cell or seed, for instance in the manufacture of a commodity product, for down regulation of expression of a target gene. Suitable target genes and target organisms in respect of the invention are discussed below in further detail.
- According to one embodiment, the methods of the invention rely on a GMO approach wherein the double-stranded RNA is expressed by a cell or an organism infested with or susceptible to infestation by insects. Preferably, said cell is a plant cell or said organism is a plant.
- The present invention thus also relates to a method for producing a plant resistant to a plant pathogenic insect, comprising:
- transforming a plant cell with a recombinant construct comprising at least one regulatory sequence operably linked to a sequence complementary to at least part of (a) a nucleotide sequence of a target insect gene selected from the group consisting of:
-
- (i) sequences which are at least 75% identical to a sequence represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or the complement thereof,
- (ii) sequences comprising at least 17 contiguous nucleotides of any of SEQ ID Nos 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159,160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or the complement thereof, and
- (iii) sequences comprising a sense strand comprising a nucleotide sequence of (i) and an antisense strand comprising the complement of said nucleotide sequence of (i), wherein the transcript encoded by said nucleotide sequence is capable of forming a double-stranded RNA,
- or (b) a nucleotide sequence which is an insect orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID Nos 49 to 158, 275 to 472, 533 to 575, 621 to 767, 813 to 862, 908 to 1040, 1161 to 1571, 1730 to 2039, 2120 to 2338, 2384 to 2460, or the complement thereof;
- regenerating a plant from the transformed plant cell; and
- growing the transformed plant under conditions suitable for the expression of the recombinant construct, said grown transformed plant resistant to plant pathogenic insects compared to an untransformed plant.
- The insect can be any insect, meaning any organism belonging to the Kingdom Animals, more specific to the Phylum Arthropoda, and to the Class Insecta or the Class Arachnida. The methods of the invention are applicable to all insects and that are susceptible to gene silencing by RNA interference and that are capable of internalising double-stranded RNA from their immediate environment. The invention is also applicable to the insect at any stage in its development. Because insects have a non-living exoskeleton, they cannot grow at a uniform rate and rather grow in stages by periodically shedding their exoskeleton. This process is referred to as moulting or ecdysis. The stages between moults are referred to as “instars” and these stages may be targeted according to the invention. Also, insect eggs or live young may also be targeted according to the present invention. All stages in the developmental cycle, which includes metamorphosis in the pterygotes, may be targeted according to the present invention. Thus, individual stages such as larvae, pupae, nymph etc stages of development may all be targeted.
- In one embodiment of the invention, the insect may belong to the following orders: Acari, Araneae, Anoplura, Coleoptera, Collembola, Dermaptera, Dictyoptera, Diplura, Diptera, Embioptera, Ephemeroptera, Grylloblatodea, Hemiptera, Homoptera, Hymenoptera, Isoptera, Lepidoptera, Mallophaga, Mecoptera, Neuroptera, Odonata, Orthoptera, Phasmida, Plecoptera, Protura, Psocoptera, Siphonaptera, Siphunculata, Thysanura, Strepsiptera, Thysanoptera, Trichoptera, and Zoraptera.
- In preferred, but non-limiting, embodiments and methods of the invention the insect is chosen from the group consisting of an insect which is a plant pest, such as but not limited to Nilaparvata spp. (e.g. N. lugens (brown planthopper)); Laodelphax spp. (e.g. L. striatellus (small brown planthopper)); Nephotettix spp. (e.g. N. virescens or N. cincticeps (green leafhopper), or N. nigropictus (rice leafhopper)); Sogatella spp. (e.g. S. furcifera (white-backed planthopper)); Blissus spp. (e.g. B. leucopterus leucopterus (chinch bug)); Scotinophora spp. (e.g. S. vermidulate (rice blackbug)); Acrostemum spp. (e.g. A. hilare (green stink bug)); Pamara spp. (e.g. P. guttata (rice skipper)); Chilo spp. (e.g. C. suppressalis (rice striped stem borer), C. auricilius (gold-fringed stem borer), or C. polychrysus (dark-headed stem borer)); Chilotraea spp. (e.g. C. polychrysa (rice stalk borer)); Sesamia spp. (e.g. S. inferens (pink rice borer)); Tryporyza spp. (e.g. T. innotata (white rice borer), or T. incertulas (yellow rice borer)); Cnaphalocrocis spp. (e.g. C. medinalis (rice leafroller)); Agromyza spp. (e.g. A. oryzae (leafminer), or A. parvicomis (corn blot leafminer)); Diatraea spp. (e.g. D. saccharalis (sugarcane borer), or D. grandiosella (southwestern corn borer)); Narnaga spp. (e.g. N. aenescens (green rice caterpillar)); Xanthodes spp. (e.g. X. transverse (green caterpillar)); Spodoptera spp. (e.g. S. frugiperda (fall armyworm), S. exigua (beet armyworm), S. littoralis (climbing cutworm) or S. praefica (western yellowstriped armyworm)); Mythimna spp. (e.g. Mythmna (Pseudaletia) seperata (armyworm)); Helicoverpa spp. (e.g. H. zea (corn earworm)); Colaspis spp. (e.g. C. brunnea (grape colaspis)); Lissorhoptrus spp. (e.g. L. oryzophilus (rice water weevil)); Echinocnemus spp. (e.g. E. squamos (rice plant weevil)); Diclodispa spp. (e.g. D. armigera (rice hispa)); Oulema spp. (e.g. O. oryzae (leaf beetle); Sitophilus spp. (e.g. S. oryzae (rice weevil)); Pachydiplosis spp. (e.g. P. oryzae (rice gall midge)); Hydrellia spp. (e.g. H. griseola (small rice leafminer), or H. sasakii (rice stem maggot)); Chlorops spp. (e.g. C. oryzae (stem maggot)); Diabrotica spp. (e.g. D. virgifera virgifera (western corn rootworm), D. barberi (northern corn rootworm), D. undecimpunctata howardi (southern corn robtworm), D. virgifera zeae (Mexican corn rootworm); D. balteata (banded cucumber beetle)); Ostrinia spp. (e.g. O. nubilalis (European corn borer)); Agrotis spp. (e.g. A. ipsilon (black cutworm)); Elasmopalpus spp. (e.g. E. lignosellus (lesser cornstalk borer)); Melanotus spp. (wireworms); Cyclocephala spp. (e.g. C. borealis (northern masked chafer), or C. immaculata (southern masked chafer)); Popillia spp. (e.g. P. japonica (Japanese beetle)); Chaetocnema spp. (e.g. C. pulicaria (corn flea beetle)); Sphenophorus spp. (e.g. S. maidis (maize billbug)); Rhopalosiphum spp. (e.g. R. maidis (corn leaf aphid)); Anuraphis spp. (e.g. A. maidiradicis (corn root aphid)); Melanoplus spp. (e.g. M. femurubrum (redlegged grasshopper) M. differentialis (differential grasshopper) or M. sanguinipes (migratory grasshopper)); Hylemya spp. (e.g. H. platura (seedcorn maggot)); Anaphothrips spp. (e.g. A. obscrurus (grass thrips)); Solenopsis spp. (e.g. S. milesta (thief ant)); or spp. (e.g. T. urticae (twospotted spider mite), T. cinnabarinus (carmine spider mite); Helicoverpa spp. (e.g. H. zea (cotton bollworm), or H. armigera (American bollworm)); Pectinophora spp. (e.g. P. gossypiella (pink bollworm)); Earias spp. (e.g. E. vittella (spotted bollworm)); Heliothis spp. (e.g. H. virescens (tobacco budworm)); Anthonomus spp. (e.g. A. grandis (boll weevil)); Pseudatomoscelis spp. (e.g. P. seriatus (cotton fleahopper)); Trialeurodes spp. (e.g. T. abutiloneus (banded-winged whitefly) T. vaporariorum (greenhouse whitefly)); Bemisia spp. (e.g. B. argentifolii (silverleaf whitefly)); Aphis spp. (e.g. A. gossypii (cotton aphid)); Lygus spp. (e.g. L. lineolaris (tarnished plant bug) or L. hesperus (western tarnished plant bug)); Euschistus spp. (e.g. E. conspersus (consperse stink bug)); Chlorochroa spp. (e.g. C. sayi (Say stinkbug)); Nezara spp. (e.g. N. viridula (southern green stinkbug)); Thrips spp. (e.g. T. tabaci (onion thrips)); Frankliniella spp. (e.g. F. fusca (tobacco thrips), or F. occidentalis (western flower thrips)); Leptinotarsa spp. (e.g. L. decemlineata (Colorado potato beetle), L. juncta (false potato beetle), or L. texana (Texan false potato beetle)); Lema spp. (e.g. L. trilineata (three-lined potato beetle)); Epitrix spp. (e.g. E. cucumeris (potato flea beetle), E. hirtipennis (flea beetle), or E. tuberis (tuber flea beetle)); Epicauta spp. (e.g. E. vittata (striped blister beetle)); Phaedon spp. (e.g. P. cochleariae (mustard leaf beetle)); Epilachna spp. (e.g. E. varivetis (mexican bean beetle)); Acheta spp. (e.g. A. domesticus (house cricket)); Empoasca spp. (e.g. E. fabae (potato leafhopper)); Myzus spp. (e.g. M. persicae (green peach aphid)); Paratrioza spp. (e.g. P. cockerelli (psyllid)); Conoderus spp. (e.g. C. falli (southern potato wireworm), or C. vespertinus (tobacco wireworm)); Phthorimaea spp. (e.g. P. operculella (potato tuberworm)); Macrosiphum spp. (e.g. M. euphorbiae (potato aphid)); Thyanta spp. (e.g. T. pallidovirens (redshouldered stinkbug)); Phthorimaea spp. (e.g. P. operculella (potato tuberworm)); Helicoverpa spp. (e.g. H. zea (tomato fruitworm); Keiferia spp. (e.g. K. lycopersicella (tomato pinworm)); Limonius spp. (wireworms); Manduca spp. (e.g. M. sexta (tobacco hornworm), or M. quinquemaculata (tomato hornworm)); Liriomyza spp. (e.g. L. sativae, L. trifolli or L. huidobrensis (leafminer)); Drosophilla spp. (e.g. D. melanogaster, D. yakuba, D. pseudoobscura or D. simulans); Carabus spp. (e.g. C. granulatus); Chironomus spp. (e.g. C. tentanus); Ctenocephalides spp. (e.g. C. felis (cat flea)); Diaprepes spp. (e.g. D. abbreviatus (root weevil)); Ips spp. (e.g. I. pini (pine engraver)); Tribolium spp. (e.g. T. castaneum (red floor beetle)); Glossina spp. (e.g. G. morsitans (tsetse fly)); Anopheles spp. (e.g. A. gambiae (malaria mosquito)); Helicoverpa spp. (e.g. H. armigera (African Bollworm)); Acyrthosiphon spp. (e.g. A. pisum (pea aphid)); Apis spp. (e.g. A. melifera (honey bee)); Homalodisca spp. (e.g. H. coagulate (glassy-winged sharpshooter)); Aedes spp. (e.g. Ae. aegypti (yellow fever mosquito)); Bombyx spp. (e.g. B. mori (silkworm)); Locusta spp. (e.g. L. migratoria (migratory locust)); Boophilus spp. (e.g. B. microplus (cattle tick)); Acanthoscurria spp. (e.g. A. gomesiana (red-haired chololate bird eater)); Diploptera spp. (e.g. D. punctata (pacific beetle cockroach)); Heliconius spp. (e.g. H. erato (red passion flower butterfly) or H. melpomene (postman butterfly)); Curculio spp. (e.g. C. glandium (acorn weevil)); Plutella spp. (e.g. P. xylostella (diamondback moth)); Amblyomma spp. (e.g. A. variegatum (cattle tick)); Anteraea spp. (e.g. A. yamamai (silkmoth)); and Armigeres spp. (e.g. A. subalbatus);
- Preferred plant pathogenic insects according to the invention are plant pest are selected from the group consisting of Leptinotarsa spp. (e.g. L. decemlineata (Colorado potato beetle), L. juncta (false potato beetle), or L. texana (Texan false potato beetle)); Nilaparvata spp. (e.g. N. lugens (brown planthopper)); Laodelphax spp. (e.g. L. striatellus (small brown planthopper)); Nephotettix spp. (e.g. N. virescens or N. cincticeps (green leafhopper), or N. nigropictus (rice leafhopper)); Sogatella spp. (e.g. S. furcifera (white-backed planthopper)); Chilo spp. (e.g. C. suppressais (rice striped stem borer), C. auricilius (gold-fringed stem borer), or C. polychrysus (dark-headed stem borer)); Sesamia spp. (e.g. S. inferens (pink rice borer)); Tryporyza spp. (e.g. T. innotata (white rice borer), or T. incertulas (yellow rice borer)); Anthonomus spp. (e.g. A. grandis (boll weevil)); Phaedon spp. (e.g. P. cochleariae (mustard leaf beetle)); Epilachna spp. (e.g. E. varivetis (mexican bean beetle)); Tribolium spp. (e.g. T. castaneum (red floor beetle)); Diabrotica spp. (e.g. D. virgifera virgifera (western corn rootworm), D. barberi (northern corn rootworm), D. undecimpunctata howardi (southern corn rootworm), D. virgifera zeae (Mexican corn rootworm); Ostrinia spp. (e.g. O. nubilalis (European corn borer)); Anaphothrips spp. (e.g. A. obscrurus (grass thrips)); Pectinophora spp. (e.g. P. gossypiella (pink bollworm)); Heliothis spp. (e.g. H. virescens (tobacco budworm)); Trialeurodes spp. (e.g. T. abutiloneus (banded-winged whitefly) T. vaporariorum (greenhouse whitefly)); Bemisia spp. (e.g. B. argentifolii (silverleaf whitefly)); Aphis spp. (e.g. A. gossypii (cotton aphid)); Lygus spp. (e.g. L. lineolaris (tarnished plant bug) or L. hesperus (western tarnished plant bug)); Euschistus spp. (e.g. E. conspersus (consperse stink bug)); Chlorochroa spp. (e.g. C. sayi (Say stinkbug)); Nezara spp. (e.g. N. viridula (southern green stinkbug)); Thrips spp. (e.g. T. tabaci (onion thrips)); Frankliniella spp. (e.g. F. fusca (tobacco thrips), or F. occidentalis (western flower thrips)); Acheta spp. (e.g. A. domesticus (house cricket)); Myzus spp. (e.g. M. persicae (green peach aphid)); Macrosiphum spp. (e.g. M. euphorbiae (potato aphid)); Blissus spp. (e.g. B. leucopterus leucopterus (chinch bug)); Acrostemum spp. (e.g. A. hilare (green stink bug)); Chilotraea spp. (e.g. C. polychrysa (rice stalk borer)); Lissorhoptrus spp. (e.g. L. oryzophilus (rice water weevil)); Rhopalosiphum spp. (e.g. R. maidis (corn leaf aphid)); and Anuraphis spp. (e.g. A. maidiradicis (corn root aphid)).
- According to a more specific embodiment, the methods of the invention are applicable for Leptinotarsa species. Leptinotarsa belong to the family of Chrysomelidae or leaf beatles. Chrysomelid beetles such as Flea Beetles and Corn Rootworms and Curculionids such as Alfalfa Weevils are particularly important pests. Flea Beetles include a large number of small leaf feeding beetles that feed on the leaves of a number of grasses, cereals and herbs. Flea Beetles include a large number of genera (e.g., Attica, Apphthona, Argopistes, Disonycha, Epitrix, Longitarsus, Prodagricomela, Systena, and Phyllotreta). The Flea Beetle, Phyllotreta cruciferae, also known as the Rape Flea Beetle, is a particularly important pest. Corn rootworms include species found in the genus Diabrotica (e.g., D. undecimpunctata undecimpunctata, D. undecimpunctata howardii, D. longicornis, D. virgifera and D. balteata). Corn rootworms cause extensive damage to corn and curcubits. The Western Spotted Cucumber Beetle, D. undecimpunctata undecimpunctata, is a pest of curcubits in the western U.S. Alfalfa weevils (also known as clover weevils) belong to the genus, Hypera (H. postica, H. brunneipennis, H. nigrirostris, H. punctata and H. meles), and are considered an important pest of legumes. The Egyptian alfalfa weevil, H. brunneipennis, is an important pest of alfalfa in the western U.S.
- There are more than 30 Leptinotarsa species. The present invention thus encompasses methods for controlling Leptinotarsa species, more specific methods for killing insects, or preventing Leptinotarsa insects to develop or to grow, or preventing insects to infect or infest. Specific Leptinotarsa species to control according to the invention include Colorado Potato Beetle (Leptinotarsa decemlineata (Say) and False Potato Beetle (Leptinotarsa juncta (Say).
- CPB is a (serious) pest on our domestic potato (Solanum tuberosum), other cultivated and wild tuber bearing and non-tuber bearing potato species (e.g. S. demissum, S. phureja a.o.) and other Solanaceous (nightshades) plant species including:
- (a) the crop species tomato (several Lycopersicon species), eggplant (Solanum melongena), peppers (several Capsicum species), tobacco (several Nicotiana species including ornamentals) and ground cherry (Physalis species);
- (b) the weed/herb species, horse nettle (S. carolinense), common nightshade (S. dulcamara), belladonna (Atropa species), thorn apple (datura species), henbane (Hyoscyamus species) and buffalo burr (S. rostratum).
- FPB is primarily found on horse nettle, but also occurs on common nightshade, ground cherry, and husk tomato (Physalis species).
- The term “insect” encompasses insects of all types and at all stages of development, including egg, larval or nymphal, pupal and adult stages.
- The present invention extends to methods as described herein, wherein the insect is Leptinotarsa decemlineata (Colorado potato beetle) and the plant is potato, eggplant, tomato, pepper, tobacco, ground cherry or rice, corn or cotton.
- The present invention extends to methods as described herein, wherein the insect is Phaedon cochleariae (mustard leaf beetle) and the plant is mustard, chinese cabbage, turnip greens, collard greens or bok choy.
- The present invention extends to methods as described herein, wherein the insect is Epilachna varivetis (Mexican bean beetle) and the plants are beans, field beans, garden beans, snap beans, lima beans, mung beans, string beans, black-eyed beans, velvet beans, soybeans, cowpeas, pigeon peas, clover or alfalfa.
- The present invention extends to methods as described herein, wherein the insect is Anthonomus grandis (cotton boll weevil) and the plant is cotton.
- The present invention extends to methods as described herein, wherein the insect is Tribolium castaneum (red flour beetle) and the plant is in the form of stored grain products such as flour, cereals, meal, crackers, beans, spices, pasta, cake mix, dried pet food, dried flowers, chocolate, nuts, seeds, and even dried museum specimens.
- The present invention extends to methods as described herein, wherein the insect is Myzus persicae (green peach aphid) and the plant is a tree such as Prunus, particularly peach, apricot and plum; a vegetable crop of the families Solanaceae, Chenopodiaceae, Compositae, Cruciferae, and Cucurbitaceae, including but not limited to, artichoke, asparagus, bean, beets, broccoli, Brussels sprouts, cabbage, carrot, cauliflower, cantaloupe, celery, corn, cucumber, fennel, kale, kohlrabi, turnip, eggplant, lettuce, mustard, okra, parsley, parsnip, pea, pepper, potato, radish, spinach, squash, tomato, turnip, watercress, and watermelon; a field crops such as, but not limited to, tobacco, sugar beet, and sunflower; a flower crop or other ornamental plant.
- The present invention extends to methods as described herein, wherein the insect is Nilaparvata lugens and the plant is a rice plant.
- The present invention extends to methods as described herein, wherein the insect is Chilo suppressalis (rice striped stem borer) and the plant is a rice plant, bareley, sorghum, maize, wheat or a grass.
- The present invention extends to methods as described herein, wherein the insect is Plutella xylostella (Diamondback moth) and the plant is a Brassica species such as, but not limited to cabbage, chinese cabbage, Brussels sprouts, kale, rapeseed, broccoli, cauliflower, turnip, mustard or radish.
- The present invention extends to methods as described herein, wherein the insect is Acheta domesticus (house cricket) and the plant is any plant as described herein or any organic matter.
- In terms of “susceptible organisms”, which benefit from the present invention, any organism which is susceptible to pest infestation is included. Preferably plants may benefit from the present invention by protection from infestation by plant pest organisms.
- In a preferred embodiment the susceptible organism is a plant and the pest is a plant pathogenic insect. In this embodiment the insect is contacted with the RNA molecule by expressing the dsRNA molecule in a plant, plant part, plant cell or plant seed that is infested with or susceptible to infestation with the plant pathogenic pest.
- In this context the term “plant” encompasses any plant material that it is desired to treat to prevent or reduce insect growth and/or insect infestation. This includes, inter alia, whole plants, seedlings, propagation or reproductive material such as seeds, cuttings, grafts, explants, etc. and also plant cell and tissue cultures. The plant material should express, or have the capability to express, the RNA molecule comprising at least one nucleotide sequence that is the RNA complement of or that represents the RNA equivalent of at least part of the nucleotide sequence of the sense strand of at least one target gene of the pest organism, such that the RNA molecule is taken up by a pest upon plant-pest interaction, said RNA molecule being capable of inhibiting the target gene or down-regulating expression of the target gene by RNA interference.
- The target gene may be any of the target genes herein described, for instance a target gene that is essential for the viability, growth, development or reproduction of the pest. The present invention relates to any gene of interest in the insect (which may be referred to herein as the “target gene”) that can be down-regulated.
- The terms “down-regulation of gene expression” and “inhibition of gene expression” are used interchangeably and refer to a measurable or observable reduction in gene expression or a complete abolition of detectable gene expression, at the level of protein product and/or mRNA product from the target gene. Preferably the down-regulation does not substantially directly inhibit the expression of other genes of the insect. The down-regulation effect of the dsRNA on gene expression may be calculated as being at least 30%, 40%, 50%, 60%, preferably 70%, 80% or even more preferably 90% or 95% when compared with normal gene expression. Depending on the nature of the target gene, down-regulation or inhibition of gene expression in cells of an insect can be confirmed by phenotypic analysis of the cell or the whole insect or by measurement of mRNA or protein expression using molecular techniques such as RNA solution hybridization, PCR, nuclease protection, Northern hybridization, reverse transcription, gene expression monitoring with a microarray, antibody binding, enzyme-linked immunosorbent assay (ELISA), Western blotting, radioimmunoassay (RIA), other immunoassays, or fluorescence-activated cell analysis (FACS).
- The “target gene” may be essentially any gene that is desirable to be inhibited because it interferes with growth or pathogenicity or infectivity of the insect. For instance, if the method of the invention is to be used to prevent insect growth and/or infestation then it is preferred to select a target gene which is essential for viability, growth, development or reproduction of the insect, or any gene that is involved with pathogenicity or infectivity of the insect, such that specific inhibition of the target gene leads to a lethal phenotype or decreases or stops insect infestation.
- According to one non-limiting embodiment, the target gene is such that when its expression is down-regulated or inhibited using the method of the invention, the insect is killed, or the reproduction or growth of the insect is stopped or retarded. This type of target genes is considered to be essential for the viability of the insect and is referred to as essential genes. Therefore, the present invention encompasses a method as described herein, wherein the target gene is an essential gene.
- According to a further non-limiting embodiment, the target gene is such that when it is down-regulated using the method of the invention, the infestation or infection by the insect, the damage caused by the insect, and/or the ability of the insect to infest or infect host organisms and/or cause such damage, is reduced. The terms “infest” and “infect” or “infestation” and “infection” are generally used interchangeably throughout. This type of target genes is considered to be involved in the pathogenicity or infectivity of the insect. Therefore, the present invention extends to methods as described herein, wherein the target gene is involved in the pathogenicity or infectivity of the insect. The advantage of choosing the latter type of target gene is that the insect is blocked to infect further plants or plant parts and is inhibited to form further generations.
- According to one embodiment, target genes are conserved genes or insect-specific genes.
- In addition, any suitable double-stranded RNA fragment capable of directing RNAi or RNA-mediated gene silencing or inhibition of an insect target gene may be used in the methods of the invention.
- In another embodiment, a gene is selected that is essentially involved in the growth, development, and reproduction of a pest, (such as an insect). Exemplary genes include but are not limited to the structural subunits of ribosomal proteins and a beta-coatamer gene, such as the CHD3 gene. Ribosomal proteins such as S4 (RpS4) and S9(RpS9) are structural constituents of the ribosome involved in protein biosynthesis and which are components of the cytosolic small ribosomal subunit, the ribosomal proteins such as L9 and L19 are structural constituent of ribosome involved in protein biosynthesis which is localised to the ribosome. The beta coatamer gene in C. elegans encodes a protein which is a subunit of a multimeric complex that forms a membrane vesicle coat. Similar sequences have been found in diverse organisms such as Arabidopsis thaliana, Drosophila melanogaster, and Saccharomyces cerevisiae. Related sequences are found in diverse organisms such as Leptinotarsa decemlineata, Phaedon cochlearae, Epilachna varivestis, Anthonomus grandis, Trbolium castaneum, Myzus persicae, Nilaparvata lugens, Chilo suppressalis, Plutella xylostella and Acheta domesticus.
- Other target genes for use in the present invention may include, for example, those that play important roles in viability, growth, development, reproduction, and infectivity. These target genes include, for example, house keeping genes, transcription factors, and pest specific genes or lethal knockout mutations in Caenorhabditis or Drosophila. The target genes for use in the present invention may also be those that are from other organisms, e.g., from insects or arachnidae (e.g. Leptinotarsa spp., Phaedon spp., Epilachna spp., Anthonomus spp., Tribolium spp., Myzus spp., Nilaparvata spp., Chilo spp., Plutella spp., or Acheta spp.).
- Preferred target genes include those specified in Table 1A and orthologous genes from other target organisms, such as from other pest organisms.
- In the methods of the present invention, dsRNA is used to inhibit growth or to interfere with the pathogenicity or infectivity of the insect.
- The invention thus relates to isolated double-stranded RNA comprising annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of a target nucleotide sequence of a target gene of an insect. The target gene may be any of the target genes described herein, or a part thereof that exerts the same function.
- According to one embodiment of the present invention, an isolated double-stranded RNA is provided comprising annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of a nucleotide sequence of an insect target gene, wherein said target gene comprises a sequence which is selected from the group comprising:
-
- (i) sequences which are at least 75% identical to a sequence represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or the complement thereof, and
- (ii) sequences comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or the complement thereof,
or wherein said insect target gene is an insect orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 49 to 158, 275 to 472, 533 to 575, 621 to 767, 813 to 862, 908 to 1040, 1161 to 1571, 1730 to 2039, 2120 to 2338, 2384 to 2460, or the complement thereof.
- Depending on the assay used to measure gene silencing, the growth inhibition can be quantified as being greater than about 5%, 10%, more preferably about 20%, 25%, 33%, 50%, 60%, 75%, 80%, most preferably about 90%, 95%, or about 99% as compared to a pest organism that has been treated with control dsRNA.
- According to another embodiment of the present invention, an isolated double-stranded RNA is provided, wherein at least one of said annealed complementary strands comprises the RNA equivalent of at least one of the nucleotide sequences represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or wherein at least one of said annealed complementary strands comprises the RNA equivalent of a fragment of at least 17 basepairs in length thereof, preferably at least 18, 19, 20 or 21, more preferably at least 22, 23 or 24 basepairs in length thereof.
- If the method of the invention is used for specifically controlling growth or infestation of a specific insect in or on a host cell or host organism, it is preferred that the double-stranded RNA does not share any significant homology with any host gene, or at least not with any essential gene of the host. In this context, it is preferred that the double-stranded RNA shows less than 30%, more preferably less that 20%, more preferably less than 10%, and even more preferably less than 5% nucleic acid sequence identity with any gene of the host cell. % sequence identity should be calculated across the full length of the double-stranded RNA region. If genomic sequence data is available for the host organism one may cross-check sequence identity with the double-stranded RNA using standard bioinformatics tools. In one embodiment, there is no sequence identity between the dsRNA and a host sequences over 21 contiguous nucleotides, meaning that in this context, it is preferred that 21 contiguous base pairs of the dsRNA do not occur in the genome of the host organism. In another embodiment, there is less than about 10% or less than about 12.5% sequence identity over 24 contiguous nucleotides of the dsRNA with any nucleotide sequence from a host species.
- The double-stranded RNA comprises annealed complementary strands, one of which has a nucleotide sequence which corresponds to a target nucleotide sequence of the target gene to be down-regulated. The other strand of the double-stranded RNA is able to base-pair with the first strand.
- The expression “target region” or “target nucleotide sequence” of the target insect gene may be any suitable region or nucleotide sequence of the gene. The target region should comprise at least 17, at least 18 or at least 19 consecutive nucleotides of the target gene, more preferably at least 20 or at least 21 nucleotide and still more preferably at least 22, 23 or 24 nucleotides of the target gene.
- It is preferred that (at least part of) the double-stranded RNA will share 100% sequence identity with the target region of the insect target gene. However, it will be appreciated that 100% sequence identity over the whole length of the double stranded region is not essential for functional RNA inhibition. RNA sequences with insertions, deletions, and single point mutations relative to the target sequence have also been found to be effective for RNA inhibition. The terms “corresponding to” or “complementary to” are used herein interchangeable, and when these terms are used to refer to sequence correspondence between the double-stranded RNA and the target region of the target gene, they are to be interpreted accordingly, i.e. as not absolutely requiring 100% sequence identity. However, the % sequence identity between the double-stranded RNA and the target region will generally be at least 80% or 85% identical, preferably at least 90%, 95%, 96%, or more preferably at least 97%, 98% and still more preferably at least 99%. Two nucleic acid strands are “substantially complementary” when at least 85% of their bases pair.
- The term “complementary” as used herein relates to both DNA-DNA complementarity as to DNA-RNA complementarity. In analogy herewith, the term “RNA equivalent” substantially means that in the DNA sequence(s), the base “T” may be replaced by the corresponding base “U” normally present in ribonucleic acids.
- Although the dsRNA contains a sequence which corresponds to the target region of the target gene it is not absolutely essential for the whole of the dsRNA to correspond to the sequence of the target region. For example, the dsRNA may contain short non-target regions flanking the target-specific sequence, provided that such sequences do not affect performance of the dsRNA in RNA inhibition to a material extent.
- The dsRNA may contain one or more substitute bases in order to optimise performance in RNAi. It will be apparent to the skilled reader how to vary each of the bases of the dsRNA in turn and test the activity of the resulting dsRNAs (e.g. in a suitable in vitro test system) in order to optimise the performance of a given dsRNA.
- The dsRNA may further contain DNA bases, non-natural bases or non-natural backbone linkages or modifications of the sugar-phosphate backbone, for example to enhance stability during storage or enhance resistance to degradation by nucleases.
- It has been previously reported that the formation of short interfering RNAs (siRNAs) of about 21 bp is desirable for effective gene silencing. However, in applications of applicant it has been shown that the minimum length of dsRNA preferably is at least about 80-100 bp in order to be efficiently taken up by certain pest organisms. There are indications that in invertebrates such as the free living nematode C. elegans or the plant parasitic nematode Meloidogyne incognita, these longer fragments are more effective in gene silencing, possibly due to a more efficient uptake of these long dsRNA by the invertebrate.
- It has also recently been suggested that synthetic RNA duplexes consisting of either 27-mer blunt or short hairpin (sh) RNAs with 29 bp stems and 2-nt 3′ overhangs are more potent inducers of RNA interference than conventional 21-mer siRNAs. Thus, molecules based upon the targets identified above and being either 27-mer blunt or short hairpin (sh) RNA's with 29-bp stems and 2-nt 3′overhangs are also included within the scope of the invention.
- Therefore, in one embodiment, the double-stranded RNA fragment (or region) will itself preferably be at least 17 bp in length, preferably 18 or 19 bp in length, more preferably at least 20 bp, more preferably at least 21 bp, or at least 22 bp, or at least 23 bp, or at least 24 bp, 25 bp, 26 bp or at least 27 bp in length. The expressions “double-stranded RNA fragment” or “double-stranded RNA region” refer to a small entity of the double-stranded RNA corresponding with (part of) the target gene.
- Generally, the double stranded RNA is preferably between about 17-1500 bp, even more preferably between about 80-1000 bp and most preferably between about 17-27 bp or between about 80-250 bp; such as double stranded RNA regions of about 17 bp, 18 bp, 19 bp, 20 bp, 21 bp, 22 bp, 23 bp, 24 bp, 25 bp, 27 bp, 50 bp, 80 bp, 100 bp, 150 bp, 200 bp, 250 bp, 300 bp, 350 bp, 400 bp, 450 bp, 500 bp, 550 bp, 600 bp, 650 bp, 700 bp, 900 bp, 100 bp, 1100 bp, 1200 bp, 1300 bp, 1400 bp or 1500 bp.
- The upper limit on the length of the double-stranded RNA may be dependent on i) the requirement for the dsRNA to be taken up by the insect and ii) the requirement for the dsRNA to be processed within the cell into fragments that direct RNAi. The chosen length may also be influenced by the method of synthesis of the RNA and the mode of delivery of the RNA to the cell. Preferably the double-stranded RNA to be used in the methods of the invention will be less than 10,000 bp in length, more preferably 1000 bp or less, more preferably 500 bp or less, more preferably 300 bp or less, more preferably 100 bp or less. For any given target gene and insect, the optimum length of the dsRNA for effective inhibition may be determined by experiment.
- The double-stranded RNA may be fully or partially double-stranded. Partially double-stranded RNAs may include short single-stranded overhangs at one or both ends of the double-stranded portion, provided that the RNA is still capable of being taken up by insects and directing RNAi. The double-stranded RNA may also contain internal non-complementary regions.
- The methods of the invention encompass the simultaneous or sequential provision of two or more different double-stranded RNAs or RNA constructs to the same insect, so as to achieve down-regulation or inhibition of multiple target genes or to achieve a more potent inhibition of a single target gene.
- Alternatively, multiple targets are hit by the provision of one double-stranded RNA that hits multiple target sequences, and a single target is more efficiently inhibited by the presence of more than one copy of the double stranded RNA fragment corresponding to the target gene. Thus, in one embodiment of the invention, the double-stranded RNA construct comprises multiple dsRNA regions, at least one strand of each dsRNA region comprising a nucleotide sequence that is complementary to at least part of a target nucleotide sequence of an insect target gene. According to the invention, the dsRNA regions in the RNA construct may be complementary to the same or to different target genes and/or the dsRNA regions may be complementary to targets from the same or from different insect species.
- The terms “hit”, “hits” and “hitting” are alternative wordings to indicate that at least one of the strands of the dsRNA is complementary to, and as such may bind to, the target gene or nucleotide sequence.
- In one embodiment, the double stranded RNA region comprises multiple copies of the nucleotide sequence that is complementary to the target gene. Alternatively, the dsRNA hits more than one target sequence of the same target gene. The invention thus encompasses isolated double stranded RNA constructs comprising at least two copies of said nucleotide sequence complementary to at least part of a nucleotide sequence of an insect target.
- The term “multiple” in the context of the present invention means at least two, at least three, at least four, at least five, at least six, etc.
- The expressions “a further target gene” or “at least one other target gene” mean for instance a second, a third or a fourth, etc. target gene.
- DsRNA that hits more than one of the above-mentioned targets, or a combination of different dsRNA against different of the above mentioned targets are developed and used in the methods of the present invention.
- Accordingly the invention relates to an isolated double stranded RNA construct comprising at least two copies of the RNA equivalent of at least one of the nucleotide sequences represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or at least two copies of the RNA equivalent of a fragment of at least 17 basepairs in length thereof, preferably at least 18, 19, 20 or 21, more preferably at least 22, 23 or 24 basepairs in length thereof. Preferably, said double-stranded RNA comprises the RNA equivalent of the nucleotide sequence as represented in SEQ ID NO 159 or 160, or a fragment of at least 17, preferably at least 18, 19, 20 or 21, more preferably at least 22, 23 or 24 basepairs in length thereof. In a further embodiment, the invention relates to an an isolated double stranded RNA construct comprising at least two copies of the RNA equivalent of the nucleotide sequence as represented by SEQ ID NO 159 or 160.
- Accordingly, the present invention extends to methods as described herein, wherein the dsRNA comprises annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of a target nucleotide sequence of an insect target gene, and which comprises the RNA equivalents of at least two nucleotide sequences independently chosen from each other. In one embodiment, the dsRNA comprises the RNA equivalents of at least two, preferably at least three, four or five, nucleotide sequences independently chosen from the sequences represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or fragments thereof of at least 17 basepairs in length, preferably at least 18, 19, 20 or 21, more preferably at least 22, 23 or 24 basepairs in length thereof.
- The at least two nucleotide sequences may be derived from the target genes herein described. According to one preferred embodiment the dsRNA hits at least one target gene that is essential for viability, growth, development or reproduction of the insect and hits at least one gene involved in pathogenicity or infectivity as described hereinabove. Alternatively, the dsRNA hits multiple genes of the same category, for example, the dsRNA hits at least 2 essential genes or at least 2 genes involved in the same cellular function. According to a further embodiment, the dsRNA hits at least 2 target genes, which target genes are involved in a different cellular function. For example the dsRNA hits two or more genes involved in protein synthesis (e.g. ribosome subunits), intracellular protein transport, nuclear mRNA splicing, or involved in one of the functions described in Table 1A.
- Preferably, the present invention extends to methods as described herein, wherein said insect target gene comprises a sequence which is which is selected from the group comprising:
-
- (i) sequences which are at least 75% identical to a sequence represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or the complement thereof, and
- (ii) sequences comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or the complement thereof,
or wherein said insect target gene is an insect orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 49 to 158, 275 to 472, 533 to 575, 621 to 767, 813 to 862, 908 to 1040, 1161 to 1571, 1730 to 2039, 2120 to 2338, 2384 to 2460, or the complement thereof.
- The dsRNA regions (or fragments) in the double stranded RNA may be combined as follows:
-
- a) when multiple dsRNA regions targeting a single target gene are combined, they may be combined in the original order (ie the order in which the regions appear in the target gene) in the RNA construct,
- b) alternatively, the original order of the fragments may be ignored so that they are scrambled and combined randomly or deliberately in any order into the double stranded RNA construct,
- c) alternatively, one single fragment may be repeated several times, for example from 1 to 10 times, e.g. 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 times, in the ds RNA construct, or
- d) the dsRNA regions (targeting a single or different target genes) may be combined in the sense or antisense orientation.
- In addition, the target gene(s) to be combined may be chosen from one or more of the following categories of genes:
-
- e) “essential” genes or “pathogenicity genes” as described above encompass genes that are vital for one or more target insects and result in a lethal or severe (e.g. feeding, reproduction, growth) phenotype when silenced. The choice of a strong lethal target gene results in a potent RNAi effect. In the RNA constructs of the invention, multiple dsRNA regions targeting the same or different (very effective) lethal genes can be combined to further increase the potency, efficacy or speed of the RNAi effect in insect control.
- f) “weak” genes encompass target genes with a particularly interesting function in one of the cellular pathways described herein, but which result in a weak phenotypic effect when silenced independently. In the RNA constructs of the invention, multiple dsRNA regions targeting a single or different weak gene(s) may be combined to obtain a stronger RNAi effect.
- g) “insect specific” genes encompass genes that have no substantial homologous counterpart in non-insect organisms as can be determined by bioinformatics homology searches, for example by BLAST searches. The choice of an insect specific target gene results in a species specific RNAi effect, with no effect or no substantial (adverse) effect in non-target organisms.
- h) “conserved genes” encompass genes that are conserved (at the amino acid level) between the target organism and non-target organism(s). To reduce possible effects on non-target species, such effective but conserved genes are analysed and target sequences from the variable regions of these conserved genes are chosen to be targeted by the dsRNA regions in the RNA construct. Here, conservation is assessed at the level of the nucleic acid sequence. Such variable regions thus encompass the least conserved sections, at the level of the nucleic acid sequence, of the conserved target gene(s).
- i) “conserved pathway” genes encompass genes that are involved in the same biological pathway or cellular process, or encompass genes that have the same functionality in different insect species resulting in a specific and potent RNAi effect and more efficient insect control;
- j) alternatively, the RNA constructs according to the present invention target multiple genes from different biological pathways, resulting in a broad cellular RNAi effect and more efficient insect control.
- According to the invention, all double stranded RNA regions comprise at least one strand that is complementary to at least part or a portion of the nucleotide sequence of any of the target genes herein described. However, provided one of the double stranded RNA regions comprises at least one strand that is complementary to a portion of the nucleotide sequence of any one of the target genes herein described, the other double stranded RNA regions may comprise at least one strand that is complementary to a portion of any other insect target gene (including known target genes).
- According to yet another embodiment of the present invention there is provided an isolated double stranded RNA or RNA construct as herein described, further comprising at least one additional sequence and optionally a linker. In one embodiment, the additional sequence is chosen from the group comprising (i) a sequence facilitating large-scale production of the dsRNA construct; (ii) a sequence effecting an increase or decrease in the stability of the dsRNA; (iii) a sequence allowing the binding of proteins or other molecules to facilitate uptake of the RNA construct by insects; (iv) a sequence which is an aptamer that binds to a receptor or to a molecule on the surface or in the cytoplasm of an insect to facilitate uptake, endocytosis and/or transcytosis by the insect; or (v) additional sequences to catalyze processing of dsRNA regions. In one embodiment, the linker is a conditionally self-cleaving RNA sequence, preferably a pH sensitive linker or a hydrophobic sensitive linker. In one embodiment, the linker is an intron.
- In one embodiment, the multiple dsRNA regions of the double-stranded RNA construct are connected by one or more linkers. In another embodiment, the linker is present at a site in the RNA construct, separating the dsRNA regions from another region of interest. Different linker types for the dsRNA constructs are provided by the present invention.
- In another embodiment, the multiple dsRNA regions of the double-stranded RNA construct are connected without linkers.
- In a particular embodiment of the invention, the linkers may be used to disconnect smaller dsRNA regions in the pest organism. Advantageously, in this situation the linker sequence may promote division of a long dsRNA into smaller dsRNA regions under particular circumstances, resulting in the release of separate dsRNA regions under these circumstances and leading to more efficient gene silencing by these smaller dsRNA regions. Examples of suitable conditionally self-cleaving linkers are RNA sequences that are self-cleaving at high pH conditions. Suitable examples of such RNA sequences are described by Borda et al. (Nucleic Acids Res. 2003 May 15; 31(10):2595-600), which document is incorporated herein by reference. This sequence originates from the catalytic core of the hammerhead ribozyme HH16.
- In another aspect of the invention, a linker is located at a site in the RNA construct, separating the dsRNA regions from another, e.g. the additional, sequence of interest, which preferably provides some additional function to the RNA construct.
- In one particular embodiment of the invention, the dsRNA constructs of the present invention are provided with an aptamer to facilitate uptake of the dsRNA by the insect. The aptamer is designed to bind a substance which is taken up by the insect. Such substances may be from an insect or plant origin. One specific example of an aptamer, is an aptamer that binds to a transmembrane protein, for example a transmembrane protein of an insect. Alternatively, the aptamer may bind a (plant) metabolite or nutrient which is taken up by the insect.
- Alternatively, the linkers are self-cleaving in the endosomes. This may be advantageous when the constructs of the present invention are taken up by the insect via endocytosis or transcytosis, and are therefore compartmentalized in the endosomes of the insect species. The endosomes may have a low pH environment, leading to cleavage of the linker.
- The above mentioned linkers that are self-cleaving in hydrophobic conditions are particularly useful in dsRNA constructs of the present invention when used to be transferred from one cell to another via the transit in a cell wall, for example when crossing the cell wall of an insect pest organism.
- An intron may also be used as a linker. An “intron” as used herein may be any non-coding RNA sequence of a messenger RNA. Particular suitable intron sequences for the constructs of the present invention are (1) U-rich (35-45%); (2) have an average length of 100 bp (varying between about 50 and about 500 bp) which base pairs may be randomly chosen or may be based on known intron sequences; (3) start at the 5′ end with -AG:GT- or -CG:GT- and/or (4) have at their 3′ end -AG:GC- or -AG:AA.
- A non-complementary RNA sequence, ranging from about 1 base pair to about 10,000 base pairs, may also be used as a linker.
- Without wishing to be bound by any particular theory or mechanism, it is thought that long double-stranded RNAs are taken up by the insect from their immediate environment. Double-stranded RNAs taken up into the gut and transferred to the gut epithelial cells are then processed within the cell into short double-stranded RNAs, called small interfering RNAs (siRNAs), by the action of an endogenous endonuclease. The resulting siRNAs then mediate RNAi via formation of a multi-component RNase complex termed the RISC or RNA interfering silencing complex.
- In order to achieve down-regulation of a target gene within an insect cell the double-stranded RNA added to the exterior of the cell wall may be any dsRNA or dsRNA construct that can be taken up into the cell and then processed within the cell into siRNAs, which then mediate RNAi, or the RNA added to the exterior of the cell could itself be an siRNA that can be taken up into the cell and thereby direct RNAi.
- siRNAs are generally short double-stranded RNAs having a length in the range of from 19 to 25 base pairs, or from 20 to 24 base pairs. In preferred embodiments siRNAs having 19, 20, 21, 22, 23, 24 or 25 base pairs, and in particular 21 or 22 base pairs, corresponding to the target gene to be down-regulated may be used. However, the invention is not intended to be limited to the use of such siRNAs.
- siRNAs may include single-stranded overhangs at one or both ends, flanking the double-stranded portion. In a particularly preferred embodiment the siRNA may contain 3′ overhanging nucleotides, preferably two 3′ overhanging thymidines (dTdT) or uridines (UU). 3′ TT or UU overhangs may be included in the siRNA if the sequence of the target gene immediately upstream of the sequence included in double-stranded part of the dsRNA is M. This allows the TT or UU overhang in the siRNA to hybridise to the target gene. Although a 3′ TT or UU overhang may also be included at the other end of the siRNA it is not essential for the target sequence downstream of the sequence included in double-stranded part of the siRNA to have AA. In this context, siRNAs which are RNA/DNA chimeras are also contemplated. These chimeras include, for example, the siRNAs comprising a double-stranded RNA with 3′ overhangs of DNA bases (e.g. dTdT), as discussed above, and also double-stranded RNAs which are polynucleotides in which one or more of the RNA bases or ribonucleotides, or even all of the ribonucleotides on an entire strand, are replaced with DNA bases or deoxynucleotides.
- The dsRNA may be formed from two separate (sense and antisense) RNA strands that are annealed together by (non-covalent) basepairing. Alternatively, the dsRNA may have a foldback stem-loop or hairpin structure, wherein the two annealed strands of the dsRNA are covalently linked. In this embodiment the sense and antisense stands of the dsRNA are formed from different regions of single polynucleotide molecule that is partially self-complementary. RNAs having this structure are convenient if the dsRNA is to be synthesised by expression in vivo, for example in a host cell or organism as discussed below, or by in vitro transcription. The precise nature and sequence of the “loop” linking the two RNA strands is generally not material to the invention, except that it should not impair the ability of the double-stranded part of the molecule to mediate RNAi. The features of “hairpin” or “stem-loop” RNAs for use in RNAi are generally known in the art (see for example WO 99/53050, in the name of CSIRO, the contents of which are incorporated herein by reference). In other embodiments of the invention, the loop structure may comprise linker sequences or additional sequences as described above.
- Another aspect of the present invention are target nucleotide sequences of the insect target genes herein disclosed. Such target nucleotide sequences are particularly important to design the dsRNA constructs according to the present invention. Such target nucleotide sequences are preferably at least 17, preferably at least 18, 19, 20 or 21, more preferably at least 22, 23 or 24 nucleotides in length. Non-limiting examples of preferred target nucleotide sequences are given in the examples.
- According to one embodiment, the present invention provides an isolated nucleotide sequence encoding a double stranded RNA or double stranded RNA construct as described herein.
- According to a more specific embodiment, the present invention relates to an isolated nucleic acid sequence consisting of a sequence represented by any of SEQ ID NOs 49 to 158, 275 to 472, 533 to 575, 621 to 767, 813 to 862, 908 to 1040, 1161 to 1571, 1730 to 2039, 2120 to 2338, 2384 to 2460, or a fragment of at least 17 preferably at least 18, 19, 20 or 21, more preferably at least 22, 23 or 24 nucleotides thereof.
- A person skilled in the art will recognize that homologues of these target genes can be found and that these homologues are also useful in the methods of the present invention.
- Protein, or nucleotide sequences are likely to be homologous if they show a “significant” level of sequence similarity or more preferably sequence identity. Truely homologous sequences are related by divergence from a common ancestor gene. Sequence homologues can be of two types: (i) where homologues exist in different species they are known as orthologues. e.g. the α-globin genes in mouse and human are orthologues. (ii) paralogues are homologous genes in within a single species. e.g. the α- and β-globin genes in mouse are paralogues
- Preferred homologues are genes comprising a sequence which is at least about 85% or 87.5%, still more preferably about 90%, still more preferably at least about 95% and most preferably at least about 99% identical to a sequence selected from the group of sequences represented by SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or the complement thereof. Methods for determining sequence identity are routine in the art and include use of the Blast software and EMBOSS software (The European Molecular Biology Open Software Suite (2000), Rice, P. Longden, I. and Bleasby, A. Trends in
Genetics 16, (6) pp 276-277). The term “identity” as used herein refers to the relationship between sequences at the nucleotide level. The expression “% identical” is determined by comparing optimally aligned sequences, e.g. two or more, over a comparison window wherein the portion of the sequence in the comparison window may comprise insertions or deletions as compared to the reference sequence for optimal alignment of the sequences. The reference sequence does not comprise insertions or deletions. The reference window is chosen from between at least 10 contiguous nucleotides to about 50, about 100 or to about 150 nucleotides, preferably between about 50 and 150 nucleotides. “% identity” is then calculated by determining the number of nucleotides that are identical between the sequences in the window, dividing the number of identical nucleotides by the number of nucleotides in the window and multiplying by 100. - Other homologues are genes which are alleles of a gene comprising a sequence as represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481. Further preferred homologues are genes comprising at least one single nucleotide polymorphism (SNIP) compared to a gene comprising a sequence as represented by any of SEQ ID NO 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159,160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481.
- According to another embodiment, the invention encompasses target genes which are insect orthologues of a gene comprising a nucleotide sequence as represented in any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481. By way of example, orthologues may comprise a nucleotide sequence as represented in any of SEQ ID NOs 49 to 123, 275 to 434, 533 to 562, 621 to 738, 813 to 852, 908 to 1010, 1161 to 1437, 1730 to 1987, 2120 to 2290, and 2384 to 2438, or a fragment thereof of at least 17, 18, 19, 20, 21, 22, 23, 24, 25, 26 or 27 nucleotides. A non-limiting list of insect or arachnida orthologues genes or sequences comprising at least a fragment of 17 bp of one of the sequences of the invention, is given in Tables 4.
- According to another embodiment, the invention encompasses target genes which are nematode orthologues of a gene comprising a nucleotide sequence as represented in any of 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 248. By way of example, nematode orthologues may comprise a nucleotide sequence as represented in any of SEQ ID NOs 124 to 135, 435 to 446, 563 to 564, 739 to 751, 853, 854, 1011 to 1025, 1438 to 1473, 1988 to 2001, 2291 to 2298, 2439 or 2440, or a fragment of at least 17, 18, 19, 20 or 21 nucleotides thereof. According to another aspect, the invention thus encompasses any of the methods described herein for controlling nematode growth in an organism, or for preventing nematode infestation of an organism susceptible to nematode infection, comprising contacting nematode cells with a double-stranded RNA, wherein the double-stranded RNA comprises annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of the nucleotide sequence of a target gene comprising a fragment of at least 17, 18, 19, 20 or 21 nucleotides of any of the sequences as represented in SEQ ID NOs 124 to 135, 435 to 446, 563 to 564, 739 to 751, 853, 854, 1011 to 1025, 1438 to 1473, 1988 to 2001, 2291 to 2298, 2439 or 2440, whereby the double-stranded RNA is taken up by the nematode and thereby controls growth or prevents infestation. The invention also relates to nematode-resistant transgenic plants comprising a fragment of at least 17, 18, 19, 20 or 21 nucleotides of any of the sequences as represented in SEQ ID NOs 124 to 135, 435 to 446, 563 to 564, 739 to 751, 853, 854, 1011 to 1025, 1438 to 1473, 1988 to 2001, 2291 to 2298, 2439 or 2440. A non-limiting list of nematode orthologues genes or sequences comprising at least a fragment of 17 bp of one of the sequences of the invention, is given in Tables 5.
- According to another embodiment, the invention encompasses target genes which are fungal orthologues of a gene comprising a nucleotide sequence as represented in any of 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481. By way of example, fungal orthologues may comprise a nucleotide sequence as represented in any of SEQ ID NOs 136 to 158, 447 to 472, 565 to 575, 752 to 767, 855 to 862, 1026 to 1040, 1475 to 1571, 2002 to 2039, 2299 to 2338, 2441 to 2460, or a fragment of at least 17, 18, 19, 20, 21, 22, 23, 24, 25, 26 or 27 nucleotides thereof. According to another aspect, the invention thus encompasses any of the methods described herein for controlling fungal growth on a cell or an organism, or for preventing fungal infestation of a cell or an organism susceptible to fungal infection, comprising contacting fungal cells with a double-stranded RNA, wherein the double-stranded RNA comprises annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of the nucleotide sequence of a target gene comprising a fragment of at least 17, 18, 19, 20 or 21 nucleotides of any of the sequences as represented in SEQ ID NOs 136 to 158, 447 to 472, 565 to 575, 752 to 767, 855 to 862, 1026 to 1040, 1475 to 1571, 2002 to 2039, 2299 to 2338, 2441 to 2460, whereby the double-stranded RNA is taken up by the fungus and thereby controls growth or prevents infestation. The invention also relates to fungal-resistant transgenic plants comprising a fragment of at least 17, 18, 19, 20 or 21 of any of the sequences as represented in SEQ ID NOs 136 to 158, 447 to 472, 565 to 575, 752 to 767, 855 to 862, 1026 to 1040, 1475 to 1571, 2002 to 2039, 2299 to 2338, 2441 to 2460. A non-limiting list of fungal orthologues genes or sequences comprising at least a fragment of 17 bp of one of the sequences of the invention, is given in Tables 6.
- In one preferred embodiment of the invention the dsRNA may be expressed by (e.g. transcribed within) a host cell or host organism, the host cell or organism being an organism susceptible or vulnerable to infestation by an insect. In this embodiment RNAi-mediated gene silencing of one or more target genes in the insect may be used as a mechanism to control growth of the insect in or on the host organism and/or to prevent or reduce insect infestation of the host organism. Thus, expression of the double-stranded RNA within cells of the host organism may confer resistance to a particular insect or to a class of insects. In case the dsRNA hits more than one insect target gene, expression of the double-stranded RNA within cells of the host organism may confer resistance to more than one insect or more than one class of insects.
- In a preferred embodiment the host organism is a plant and the insect is a plant pathogenic insect. In this embodiment the insect is contacted with the double-stranded RNA by expressing the double-stranded RNA in a plant or plant cell that is infested with or susceptible to infestation with the plant pathogenic insect.
- In this context the term “plant” encompasses any plant material that it is desired to treat to prevent or reduce insect growth and/or insect infestation. This includes, inter alia, whole plants, seedlings, propagation or reproductive material such as seeds, cuttings, grafts, explants, etc. and also plant cell and tissue cultures. The plant material should express, or have the capability to express, dsRNA corresponding to one or more target genes of the insect.
- Therefore, in a further aspect the invention provides a plant, preferably a transgenic plant, or propagation or reproductive material for a (transgenic) plant, or a plant cell culture expressing or capable of expressing at least one double-stranded RNA, wherein the double-stranded RNA comprises annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of a target nucleotide sequence of a target gene of an insect, such that the double-stranded RNA is taken up by an insect upon plant-insect interaction, said double stranded RNA being capable of inhibiting the target gene or down-regulating expression of the target gene by RNA interference. The target gene may be any of the target genes herein described, for instance a target gene that is essential for the viability, growth, development or reproduction of the insect.
- In this embodiment the insect can be any insect, but is preferably plant pathogenic insect. Preferred plant pathogenic insects include, but are not limited to, those listed above.
- A plant to be used in the methods of the invention, or a transgenic plant according to the invention encompasses any plant, but is preferably a plant that is susceptible to infestation by a plant pathogenic insect.
- Accordingly, the present invention extends to methods as described herein wherein the plant is chosen from the following group of plants (or crops): alfalfa, apple, apricot, artichoke, asparagus, avocado, banana, barley, beans, beet, blackberry, blueberry, broccoli, brussel sprouts, cabbage, canola, carrot, cassaya, cauliflower, a cereal, celery, cherry, citrus, clemintine, coffee, corn, cotton, cucumber, eggplant, endive, eucalyptus, figes, grape, grapefruit, groundnuts, ground cherry, kiwifruit, lettuce, leek, lemon, lime, pine, maize, mango, melon, millet, mushroom, nut aot, okra, onion, orange, an ornamental plant or flower or tree, papaya, parsley, pea, peach, peanut, peat, pepper, persimmon, pineapple, plantain, plum, pomegranate, potato, pumpkin, radicchio, radish, rapeseed, raspberry, rice, rye, sorghum, soy, soybean, spinach, strawberry, sugarbeet, sugarcane, sunflower, sweet potato, tangerine, tea, tobacco, tomato, a vine, watermelon, wheat, yams and zucchini.
- In one embodiment the present invention extends to methods as described herein, wherein the plant is potato and the target gene is a gene from an insect selected from the group consisting of Leptinotarsa spp. (e.g. L. decemlineata (Colorado potato beetle), L. juncta (false potato beetle), or L. texana (Texan false potato beetle)); Lema spp. (e.g. L. trilineata (three-lined potato beetle)); Epitrix spp. (e.g. E. cucumeris (potato flea beetle) or E. tuberis (tuber flea beetle)); Epicauta spp. (e.g. E. vittata (striped blister beetle)); Phaedon spp. (e.g. P. cochleariae (mustard leaf beetle)); Empoasca spp. (e.g. E. fabae (potato leafhopper)); Myzus spp. (e.g. M. persicae (green peach aphid)); Paratrioza spp. (e.g. P. cockerelli (potato psyllid)); Ostrinia spp. (e.g. O. nubilalis (European corn borer)); Conoderus spp. (e.g. C. falli (southern potato wireworm), or C. vespertinus (tobacco wireworm)); and Phthorimaea spp. (e.g. P. operculella (potato tuberworm)); in another embodiment the present invention extends to methods as described herein, wherein the plant is tomato and the target gene is a gene from an insect selected from the group consisting of: Macrosiphum spp. (e.g. M. euphorbiae (potato aphid)); Myzus spp. (e.g. M. persicae (green peach aphid)); Trialeurodes spp. (e.g. T. vaporariorum (greenhouse whitefly), or T. abutilonia (banded-winged whitefly)); Bemisia spp. (e.g. B. argentifolii (silverleaf whitefly)); Frankliniella spp. (e.g. F. occidentalis (western flower thrips)); Leptinotarsa spp. (e.g. L. decemlineata (Colorado potato beetle), L. juncta (false potato beetle), or L. texana (Texan false potato beetle)); Epitrix spp. (e.g. E. hirtipennis (flea beetle)); Lygus spp. (e.g. L. lineolaris (tarnished plant bug), or L. hesperus (western tarnished plant bug)); Euschistus spp. (e.g. E. conspresus (consperse stinkbug)); Nezara spp. (e.g. N. viridula (southern green stinkbug)); Thyanta spp. (e.g. T. pallidovirens (redshouldered stinkbug)); Phthorimaea spp. (e.g. P. operculella (potato tuberworm)); Helicoverpa spp. (e.g. H. zea (tomato fruitworm); Keiferia spp. (e.g. K. lycopersicella (tomato pinworm)); Spodoptera spp. (e.g. S. exigua (beet armyworm), or S. praefica (western yellowstriped armyworm)); Limonius spp. (wireworms); Agrotis spp. (e.g. A. ipsilon (black cutworm)); Manduca spp. (e.g. M. sexta (tobacco hornworm), or M. quinquemaculata (tomato hornworm)); Liriomyza spp. (e.g. L. sativae, L. trifolli or L. huidobrensis (leafminer)); and Paratrioza spp. (e.g. P. cockerelli (tomato psyllid)); In another embodiment the present invention extends to methods as described herein, wherein the plant is corn and the target gene is a gene from an insect selected from the group consisting of: Diabrotica spp. (e.g. D. virgifera virgifera (western corn rootworm), D. barberi (northern corn rootworm), D. undecimpunctata howardi (southern corn rootworm), D. virgifera zeae (Mexican corn rootworm); D. balteata (banded cucumber beetle)); Ostrinia spp. (e.g. O. nubilalis (European corn borer)); Agrotis spp. (e.g. A. ipsilon (black cutworm)); Helicoverpa spp. (e.g. H. zea (corn earworm)); Spodoptera spp. (e.g. S. frugiperda (fall armyworm)); Diatraea spp. (e.g. D. grandiosella (southwestern corn borer), or D. saccharalis (sugarcane borer)); Elasmopalpus spp. (e.g. E. lignosellus (lesser cornstalk borer)); Melanotus spp. (wireworms); Cyclocephala spp. (e.g. C. borealis (northern masked chafer)); Cyclocephala spp. (e.g. C. immaculata (southern masked chafer)); Popillia spp. (e.g. P. japonica (Japanese beetle)); Chaetocnema spp. (e.g. C. pulicaria (corn flea beetle)); Sphenophorus spp. (e.g. S. maidis (maize billbug)); Rhopalosiphum spp. (e.g. R. maidis (corn leaf aphid)); Anuraphis spp. (e.g. A. maidiradicis (corn root aphid)); Blissus spp. (e.g. B. leucopterus leucopterus (chinch bug)); Melanoplus spp. (e.g. M. femurrubrum (redlegged grasshopper), M. sanguinipes (migratory grasshopper)); Hylemya spp. (e.g. H. platura (seedcorn maggot)); Agromyza spp. (e.g. A. parvicomis (corn blot leafminer)); Anaphothrips spp. (e.g. A. obscrurus (grass thrips)); Solenopsis spp. (e.g. S. milesta (thief ant)); and Tetranychus spp. (e.g. T. urticae (twospotted spider mite)); in another embodiment the present invention extends to methods as described herein, wherein the plant is cotton and the target gene is a gene from an insect selected from the group consisting of: Helicoverpa spp. (e.g. H. zea (cotton bollworm)); Pectinophora spp. (e.g. P. gossypiella (pink bollworm)); Helicoverpa spp. (e.g. H. armigera (American bollworm)); Earias spp. (e.g. E. vittella (spotted bollworm)); Heliothis spp. (e.g. H. virescens (tobacco budworm)); Spodoptera spp. (e.g. S. exigua (beet armyworm)); Anthonomus spp. (e.g. A. grandis (boll weevil)); Pseudatomoscelis spp. (e.g. P. seriatus (cotton fleahopper)); Trialeurodes spp. (e.g. T. abutiloneus (banded-winged whitefly) T. vaporariorum (greenhouse whitefly)); Bemisia spp. (e.g. B. argentifolii (silverleaf whitefly)); Aphis spp. (e.g. A. gossypii (cotton aphid)); Lygus spp. (e.g. L. lineolaris (tarnished plant bug) or L. hesperus (western tarnished plant bug)); Euschistus spp. (e.g. E. conspersus (consperse stink bug)); Chlorochroa spp. (e.g. C. sayi (Say stinkbug)); Nezara spp. (e.g. N. viridula (green stinkbug)); Thrips spp. (e.g. T. tabaci (onion thrips)); Franklinkiella spp. (e.g. F. fusca (tobacco thrips), or F. occidentalis (western flower thrips)); Melanoplus spp. (e.g. M. femurrubrum (redlegged grasshopper), or M. differentialis (differential grasshopper)); and Tetranychus spp. (e.g. T. cinnabarinus (carmine spider mite), or T. urticae (twospotted spider mite)); in another embodiment the present invention extends to methods as described herein, wherein the plant is rice and the target gene is a gene from an insect selected from the group consisting of: Nilaparvata spp. (e.g. N. lugens (brown planthopper)); Laodelphax spp. (e.g. L. striatellus (small brown planthopper)); Nephotettix spp. (e.g. N. virescens or N. cincticeps (green leafhopper), or N. nigropictus (rice leafhopper)); Sogatella spp. (e.g. S. furcifera (white-backed planthopper)); Blissus spp. (e.g. B. leucopterus leucopterus (chinch bug)); Scotinophora spp. (e.g. S. vermidulate (rice blackbug)); Acrostemum spp. (e.g. A. hilare (green stink bug)); Pamara spp. (e.g. P. guttata (rice skipper)); Chilo spp. (e.g. C. suppressalis (rice striped stem borer), C. auricilius (gold-fringed stem borer), or C. polychrysus (dark-headed stem borer)); Chilotraea spp. (e.g. C. polychrysa (rice stalk borer)); Sesamia spp. (e.g. S. inferens (pink rice borer)); Tryporyza spp. (e.g. T. innotata (white rice borer)); Tryporyza spp. (e.g T. incertulas (yellow rice borer)); Cnaphalocrocis spp. (e.g. C. medinalis (rice leafroller)); Agromyza spp. (e.g. A. oryzae (leafminer)); Diatraea spp. (e.g. D. saccharalis (sugarcane borer)); Namaga spp. (e.g. N. aenescens (green rice caterpillar)); Xanthodes spp. (e.g. X. transversa (green caterpillar)); Spodoptera spp. (e.g. S. frugiperda (fall armyworm)); Mythimna spp. (e.g. Mythmna (Pseudaletia) seperata (armyworm)); Helicoverpa spp. (e.g. H. zea (corn earworm)); Colaspis spp. (e.g. C. brunnea (grape colaspis)); Lissorhoptrus spp. (e.g. L. oryzophilus (rice water weevil)); Echinocnemus spp. (e.g. E. squamos (rice plant weevil)); Diclodispa spp. (e.g. D. armigera (rice hispa)); Oulema spp. (e.g. O. oryzae (leaf beetle); Sitophilus spp. (e.g. S. oryzae (rice weevil)); Pachydiplosis spp. (e.g. P. oryzae (rice gall midge)); Hydrellia spp. (e.g. H. griseola (small rice leafminer)); Chlorops spp. (e.g. C. oryzae (stem maggot)); and Hydrellia spp. (e.g. H. sasakii (rice stem maggot));
- Transgenic plants according to the invention extend to all plant species specifically described above being resistant to the respective insect species as specifically described above. Preferred transgenic plants (or reproductive or propagation material for a transgenic plant, or a cultured transgenic plant cell) are plants (or reproductive or propagation material for a transgenic plant, or a cultured transgenic plant cell) wherein said plant comprises a nucleic acid sequence which is selected from the group comprising:
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- (i) sequences which are at least 75% identical to a sequence represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or the complement thereof, and
- (ii) sequences comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or the complement thereof,
- or wherein said nucleic acid is an insect orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 49 to 158, 275 to 472, 533 to 575, 621 to 767, 813 to 862, 908 to ˜1040, 1161 to 1571, 1730 to 2039, 2120 to 2338, 2384 to 2460, or the complement thereof.
- The present invention also encompasses plants (or reproductive or propagation material for a transgenic plant, or a cultured transgenic plant cell) which express or are capable of expressing at least one of the nucleotides of the invention, for instance at least one of the nucleotide sequences represented in any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159,160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1066 to 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476, 2481 or 2486, or the complement thereof, or comprising a fragment thereof comprising at least 17, preferably at least 18, 19, 20 or 21, more preferably at least 22, 23 or 24 nucleotides.
- The plant may be provided in a form wherein it is actively expressing (transcribing) the double-stranded RNA in one or more cells, cell types or tissues. Alternatively, the plant may be “capable of expressing”, meaning that it is transformed with a transgene which encodes the desired dsRNA but that the transgene is not active in the plant when (and in the form in which) the plant is supplied.
- Therefore, according to another embodiment, a recombinant DNA construct is provided comprising the nucleotide sequence encoding the dsRNA or dsRNA construct according to the present invention operably linked to at least one regulatory sequence. Preferably, the regulatory sequence is selected from the group comprising constitutive promoters or tissue specific promoters as described below.
- The target gene may be any target gene herein described. Preferably the regulatory element is a regulatory element that is active in a plant cell. More preferably, the regulatory element is originating from a plant. The term “regulatory sequence” is to be taken in a broad context and refers to a regulatory nucleic acid capable of effecting expression of the sequences to which it is operably linked.
- Encompassed by the aforementioned term are promoters and nucleic acids or synthetic fusion molecules or derivatives thereof which activate or enhance expression of a nucleic acid, so called activators or enhancers. The term “operably linked” as used herein refers to a functional linkage between the promoter sequence and the gene of interest, such that the promoter sequence is able to initiate transcription of the gene of interest.
- By way of example, the transgene nucleotide sequence encoding the double-stranded RNA could be placed under the control of an inducible or growth or developmental stage-specific promoter which permits transcription of the dsRNA to be turned on, by the addition of the inducer for an inducible promoter or when the particular stage of growth or development is reached.
- Alternatively, the transgene encoding the double-stranded RNA is placed under the control of a strong constitutive promoter such as any selected from the group comprising the CaMV35S promoter, doubled CaMV35S promoter, ubiquitin promoter, actin promoter, rubisco promoter, GOS2 promoter, Figwort mosaic viruse (FMV) 34S promoter, cassaya vein mosaic virus (CsVMV) promoter (Verdaguer B. et al, Plant Mol. Biol. 1998 37(6):1055-67).
- Alternatively, the transgene encoding the double-stranded RNA is placed under the control of a tissue specific promoter such as any selected from the group comprising root specific promoters of genes encoding PsMTA Class III chitinase, photosynthetic tissue-specific promoters such as promoters of cab1 and cab2, rbcS, gapA, gapB and ST-LS1 proteins, JAS promoters, chalcone synthase promoter and promoter of RJ39 from strawberry.
- In another embodiment, the transgene encoding the double-stranded RNA is placed under the control of an insect-induced promoter, for instance the potato proteinase inhibitor II (PinII) promoter (Duan X et al, Nat. Biotechnol. 1996, 14(4):494-8)); or a wounding-induced promoter, for instance the jasmonates and ethylene induced promoters, PDF1.2 promoter (Manners J M et al., Plant Mol. Biol. 1998, 38(6):1071-80); or under a defense related promoter, for instance the salicylic acid induced promoters and plant-pathogenesis related protein (PR protein) promoters (PR1 promoter (Cornelissen B J et al., Nucleic Acids Res. 1987, 15(17):6799-811; COMT promoter (Toquin V et al, Plant Mol. Biol. 2003, 52(3):495-509).
- Furthermore, when using the methods of the present invention for developing transgenic plants resistant against insects, it might be beneficial to place the nucleic acid encoding the double-stranded RNA according to the present invention under the control of a tissue-specific promoter. In order to improve the transfer of the dsRNA from the plant cell to the pest, the plants could preferably express the dsRNA in a plant part that is first accessed or damaged by the plant pest. In case of plant pathogenic insects, preferred tissues to express the dsRNA are the leaves, stems, roots, and seeds. Therefore, in the methods of the present invention, a plant tissue-preferred promoter may be used, such as a leaf-specific promoter, a stem-specific promoter, a phloem-specific promoter, a xylem-specific promoter, a root-specific promoter, or a seed-specific promoter (sucrose transporter gene AtSUC promoter (Baud S et al., Plant J. 2005, 43(6):824-36), wheat high molecular weight glutenin gene promoter (Robert L S et al., Plant Cell. 1989, 1(6):569-78.)).
- Suitable examples of a root specific promoter are PsMTA (Fordam-Skelton, A. P., et al., 1997 Plant Molecular Biology 34: 659-668.) and the Class III Chitinase promoter. Examples of leaf- and stem-specific or photosynthetic tissue-specific promoters that are also photoactivated are promoters of two chlorophyll binding proteins (cab1 and cab2) from sugar beet (Stahl D. J., et al., 2004 BMC Biotechnology 2004 4:31), ribulose-bisphosphate carboxylase (Rubisco), encoded by rbcS (Nomura M. et al., 2000 Plant Mol. Biol. 44: 99-106), A (gapA) and B (gapB) subunits of chloroplast glyceraldehyde-3-phosphate dehydrogenase (Conley T. R. et al. 1994 Mol. Cell. Biol. 19: 2525-33; Kwon H. B. et al. 1994 Plant Physiol. 105: 357-67), promoter of the Solanum tuberosum gene encoding the leaf and stem specific (ST-LS1) protein (Zaidi M. A. et al., 2005 Transgenic Res. 14:289-98), stem-regulated, defense-inducible genes, such as JAS promoters (patent publication no. 20050034192/US-A1). An example of a flower-specific promoter is for instance, the chalcone synthase promoter (Faktor O. et al. 1996 Plant Mol. Biol. 32: 849) and an example of a fruit-specific promoter is for instance RJ39 from strawberry (WO 98 31812).
- In yet other embodiments of the present invention, other promoters useful for the expression of dsRNA are used and include, but are not limited to, promoters from an RNA Poll, an RNA Poll, an RNA PolIII, T7 RNA polymerase or SP6 RNA polymerase. These promoters are typically used for in vitro-production of dsRNA, which dsRNA is then included in an antiinsecticidal agent, for example, in an anti-insecticidal liquid, spray or powder.
- Therefore, the present invention also encompasses a method for generating any of the double-stranded RNA or RNA constructs of the invention. This method comprises the steps of
-
- a. contacting an isolated nucleic acid or a recombinant DNA construct of the invention with cell-free components; or
- b. introducing (e.g. by transformation, transfection or injection) an isolated nucleic acid or a recombinant DNA construct of the invention in a cell, under conditions that allow transcription of said nucleic acid or recombinant DNA construct to produce the dsRNA or RNA construct.
- Optionally, one or more transcription termination sequences may also be incorporated in the recombinant construct of the invention. The term “transcription termination sequence” encompasses a control sequence at the end of a transcriptional unit, which signals 3′ processing and poly-adenylation of a primary transcript and termination of transcription. Additional regulatory elements, such as transcriptional or translational enhancers, may be incorporated in the expression construct.
- The recombinant constructs of the invention may further include an origin of replication which is required for maintenance and/or replication in a specific cell type. One example is when an expression construct is required to be maintained in a bacterial cell as an episomal genetic element (e.g. plasmid or cosmid molecule) in a cell. Preferred origins of replication include, but are not limited to, f1-ori and colE1 ori.
- The recombinant construct may optionally comprise a selectable marker gene. As used herein, the term “selectable marker gene” includes any gene, which confers a phenotype on a cell in which it is expressed to facilitate the identification and/or selection of cells, which are transfected or transformed, with an expression construct of the invention. Examples of suitable selectable markers include resistance genes against ampicillin (Ampr), tetracycline (Tcr), kanamycin (Kanr), phosphinothricin, and chloramphenicol (CAT) gene. Other suitable marker genes provide a metabolic trait, for example manA. Visual marker genes may also be used and include for example beta-glucuronidase (GUS), luciferase and Green Fluorescent Protein (GFP).
- Plants that have been stably transformed with a transgene encoding the dsRNA may be supplied as seed, reproductive material, propagation material or cell culture material which does not actively express the dsRNA but has the capability to do so.
- Accordingly, the present invention encompasses a plant (e.g. a rice plant), or a seed (e.g. a rice seed), or a cell (e.g. a bacterial or plant cell), comprising at least one double-stranded RNA or at least one double-stranded RNA construct as described herein: or at least one nucleotide sequence or at least one recombinant DNA construct as described herein; or at least one plant cell as described herein. The present invention also encompasses a plant (e.g. an alfalfa, apple, apricot, artichoke, asparagus, avocado, banana, barley, beans, beet, blackberry, blueberry, broccoli, brussel sprouts, cabbage, canola, carrot, cassaya, cauliflower, a cereal, celery, cherry, citrus, clemintine, coffee, corn, cotton, cucumber, eggplant, endive, eucalyptus, figes, grape, grapefruit, groundnuts, ground cherry, kiwifruit, lettuce, leek, lemon, lime, pine, maize, mango, melon, millet, mushroom, nut aot, okra, onion, orange, an ornamental plant or flower or tree, papaya, parsley, pea, peach, peanut, peat, pepper, persimmon, pineapple, plantain, plum, pomegranate, potato, pumpkin, radicchio, radish, rapeseed, raspberry, rice, rye, sorghum, soy, soybean, spinach, strawberry, sugarbeet, sugarcane, sunflower, sweet potato, tangerine, tea, tobacco, tomato, a vine, watermelon, wheat, yams or zucchiniplant; preferably a potato, eggplant, tomato, pepper, tobacco, ground cherry, rice corn or cotton plant), or a seed or tuber (e.g. an alfalfa, apple, apricot, artichoke, asparagus, avocado, banana, barley, beans, beet, blackberry, blueberry, broccoli, brussel sprouts, cabbage, canola, carrot, cassaya, cauliflower, a cereal, celery, cherry, citrus, clemintine, coffee, corn, cotton, cucumber, eggplant, endive, eucalyptus, figes, grape, grapefruit, groundnuts, ground cherry, kiwifruit, lettuce, leek, lemon, lime, pine, maize, mango, melon, millet, mushroom, nut aot, okra, onion, orange, an ornamental plant or flower or tree, papaya, parsley, pea, peach, peanut, peat, pepper, persimmon, pineapple, plantain, plum, pomegranate, potato, pumpkin, radicchio, radish, rapeseed, raspberry, rice, rye, sorghum, soy, soybean, spinach, strawberry, sugarbeet, sugarcane, sunflower, sweet potato, tangerine, tea, tobacco, tomato, a vine, watermelon, wheat, yams or zucchini plant; preferably a potato, eggplant, tomato, pepper, tobacco, ground cherry, rice, corn or cotton seed or tuber), or a cell (e.g. a bacterial or plant cell), comprising at least one double-stranded RNA or at least one double-stranded RNA construct as described herein: or at least one nucleotide sequence or at least one recombinant DNA construct as described herein. Preferably, these plants or seeds or cells comprise a recombinant construct wherein the nucleotide sequence encoding the dsRNA or dsRNA construct according to the present invention is operably linked to at least one regulatory element as described above.
- The plant may be provided in a form wherein it is actively expressing (transcribing) the RNA molecule in one or more cells, cell types or tissues. Alternatively, the plant may be “capable of expressing”, meaning that it is transformed with a transgene which encodes the desired RNA molecule but that the transgene is not active in the plant when (and in the form in which) the plant is supplied.
- In one particular embodiment, there is provided a recombinant (expression) construct for expression of an RNA molecule in a plant or in a plant cell comprising at least one regulatory sequence operably linked to a nucleic acid molecule comprising at least 14, 15, 16, 17, 18, 19, 20, 21, 22 etc. nucleotides, up to all of the nucleotides of the sequence set forth as SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1066 to 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476, 2481 or 2486, or comprising at least 14, 15, 16, 17, 18, 19, 20, 21, 22 etc. up to all nucleotides of the sequence of an orthologous nucleic acid molecule from a different target species. Many vectors are available for this purpose, and selection of the appropriate vector will depend mainly on the size of the nucleic acid to be inserted into the vector and the particular host cell to be transformed with the vector.
- General techniques for expression of exogenous double-stranded RNA in plants for the purposes of RNAi are known in the art (see Baulcombe D, 2004, Nature. 431(7006):356-63. RNA silencing in plants, the contents of which are incorporated herein by reference). More particularly, methods for expression of double-stranded RNA in plants for the purposes of down-regulating gene expression in plant pests such as nematodes or insects are also known in the art. Similar methods can be applied in an analogous manner in order to express double-stranded RNA in plants for the purposes of down-regulating expression of a target gene in a plant pathogenic insect. In order to achieve this effect it is necessary only for the plant to express (transcribe) the double-stranded RNA in a part of the plant which will come into direct contact with the insect, such that the double-stranded RNA can be taken up by the insect. Depending on the nature of the insect and its relationship with the host plant, expression of the dsRNA could occur within a cell or tissue of a plant within which the insect is also present during its life cycle, or the RNA may be secreted into a space between cells, such as the apoplast, that is occupied by the insect during its life cycle. Furthermore, the dsRNA may be located in the plant cell, for example in the cytosol, or in the plant cell organelles such as a chloroplast, mitochondrion, vacuole or endoplastic reticulum.
- Alternatively, the dsRNA may be secreted by the plant cell and by the plant to the exterior of the plant. As such, the dsRNA may form a protective layer on the surface of the plant.
- In a further aspect, the invention also provides combinations of methods and compositions for preventing or protecting plants from pest infestation. For instance, one means provides using the plant transgenic approach combining methods using expression of dsRNA molecules and methods using expression of such Bt insecticidal proteins.
- Therefore the invention also relates to a method or a plant cell or plant described herein, wherein said plant cell or plant expressing said RNA molecule comprises or expresses a pesticidal agent selected from the group consisting of a patatin, a Bacillus thuringiensis insecticidal protein, a Xenorhabdus insecticidal protein, a Photorhabdus insecticidal protein, a Bacillus laterosporous insecticidal protein, and a Bacillus sphearicus insecticidal protein. Preferably said Bacillus thuringiensis insecticidal protein is selected from the group consisting of a Cry1, a Cry3, a TIC851, a CryET170, a Cry22, a binary insecticidal protein CryET33 and CryET34, a binary insecticidal protein CryET80 and CryET76, a binary insecticidal protein TIC100 and TIC101, and a binary insecticidal protein PS149B1.
- In a further embodiment, the invention relates to a composition for controlling insect growth and/or preventing or reducing insect infestation, comprising at least a plant part, plant cell, plant tissue or seed comprising at least one double-stranded RNA, wherein said double-stranded RNA comprises annealed complementary strands, one of which has a nucleotide sequence which is complementary to at least part of a nucleotide sequence of an insect target gene. Optionally, the composition further comprises at least one suitable carrier, excipient or diluent. The target gene may be any target gene described herein. Preferably the insect target gene is essential for the viability, growth, development or reproduction of the insect.
- In another aspect the invention relates to a composition as described above, wherein the insect target gene comprises a sequence which is at least 75%, preferably at least 80%, 85%, 90%, more preferably at least 95%, 98% or 99% identical to a sequence selected from the group of sequences represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1066 to 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476, 2481 or 2486, or the complement thereof, or wherein said insect target gene is an insect orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1066 to 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476, 2481 or 2486, or the complement thereof.
- According to a still further embodiment, the present invention extends to a method for increasing plant yield comprising introducing in a plant any of the nucleotide sequences or recombinant DNA constructs as herein described in an expressible format. Plants encompassed by this method are as described earlier.
- The invention will be further understood with reference to the following non-limiting examples.
-
FIG. 1-LD : Survival of L. decemlineata on artificial diet treated with dsRNA. Insects of the second larval stage were fed diet treated with 50 μl of topically-applied solution of dsRNA (targets or gfp control). Diet was replaced with fresh diet containing topically-applied dsRNA after 7 days. The number of surviving insects were assessed atdays -
FIG. 2-LD : Survival of L. decemlineata on artificial diet treated with dsRNA. Insects of the second larval stage were fed diet treated with 50 μl of topically-applied solution of dsRNA (targets or gfp control). Diet was replaced with fresh diet only after 7 days. The number of surviving insects was assessed atdays -
FIG. 3-LD : Average weight of L. decemlineata larvae on potato leaf discs treated with dsRNA. Insects of the second larval stage were fed leaf discs treated with 20 μl of a topically-applied solution (10 ng/μl) of dsRNA (target LD002 or gfp). After two days the insects were transferred on to untreated leaves every day. -
FIG. 4-LD : Survival of L. decemlineata on artificial diet treated with shorter versions of target LD014 dsRNA and concatemer dsRNA. Insects of the second larval stage were fed diet treated with 50 μl of topically-applied solution of dsRNA (gfp or targets). The number of surviving insects were assessed atdays -
FIG. 5-LD : Survival of L. decemlineata larvae on artificial diet treated with different concentrations of dsRNA of target LD002 (a), target LD007 (b), target LD010 (c), target LD011 (d), target LD014 (e), target LD015 (f), LD016 (g) and target LD027 (h). Insects of the second larval stage were fed diet treated with 50 μl of topically-applied solution of dsRNA. Diet was replaced with fresh diet containing topically-applied dsRNA after 7 days. The number of surviving insects were assessed at regular intervals. The percentage of surviving larvae were calculated relative to day 0 (start of assay). -
FIG. 6-LD . Survival of L. decemlineata adults on potato leaf discs treated with dsRNA. Young adult insects were fed double-stranded-RNA-treated leaf discs for the first two days and were then placed on untreated potato foliage. The number of surviving insects were assessed regularly; mobile insects were recorded as insects which were alive and appeared to move normally; moribund insects were recorded as insects which were alive but appeared sick and slow moving—these insects were not able to right themselves once placed on their backs. Target LD002 (SEQ ID NO 168); Target LD010 (SEQ ID NO 188); Target LD014 (SEQ ID NO 198); Target LD016 (SEQ ID NO 220); gfp dsRNA (SEQ ID NO 235). -
FIG. 7-LD . Mortality and growth/developmental delay of larval survivors of the Colorado potato beetle, Leptinotarsa decemlineata, on transgenic potato plants. Seven CPB L1 larvae were fed on transgenic potato siblings harbouring LD002 construct (), empty vector (▴), or wild type line V plants (▪) for seven days. Mortality is expressed in percentage and average larval weight in mg. -
FIG. 1-PC : Effects of ingested target dsRNAs on survival and growth of P. cochleariae larvae. Neonate larvae were fed oilseed rape leaf discs treated with 25 μl of topically-applied solution of 0.1 μg/μl dsRNA (targets or gfp control). After 2 days, the insects were transferred onto fresh dsRNA-treated leaf discs. Atday 4, larvae from one replicate for every treatment were collected and placed in a Petri dish containing fresh untreated oilseed rape foliage. The insects were assessed atdays -
FIG. 2-PC : Survival of P. cochleariae on oilseed rape leaf discs treated with different concentrations of dsRNA of (a) target PC010 and (b) target PC027. Neonate larvae were placed on leaf discs treated with 25 μl of topically-applied solution of dsRNA. Insects were transferred to fresh treated leaf discs atday 2. Atday 4 for target PC010 andday 5 for target PC027, the insects were transferred to untreated leaves. The number of surviving insects were assessed atdays -
FIG. 1-EV : Survival of E. varivestis larvae on bean leaf discs treated with dsRNA. Neonate larvae were fed bean leaf discs treated with 25 μl of topically-applied solution of 1 μg/μl dsRNA (targets or gfp control). After 2 days, the insects were transferred onto fresh dsRNA-treated leaf discs. Atday 4, larvae from one treatment were collected and placed in a plastic box containing fresh untreated bean foliage. The insects were assessed for mortality atdays -
FIG. 2-EV : Effects of ingested target dsRNAs on survival of E. varivestis adults and resistance to snap bean foliar insect damage. (a) Survival of E. vanvestis adults on bean leaf treated with dsRNA. Adults were fed bean leaf discs treated with 75 μl of topically-applied solution of 0.1 μg/μl dsRNA (targets or gfp control). After 24 hours, the insects were transferred onto fresh dsRNA-treated leaf discs. After a further 24 hours, adults from one treatment were collected and placed in a plastic box containing potted fresh untreated whole bean plants. The insects were assessed for mortality atdays day 9. (i) target 10; (ii)target 15; (iii)target 16; (iv) gfp dsRNA; (v) untreated. -
FIG. 1-TC : Survival of T. castaneum larvae on artificial diet treated with dsRNA oftarget 14. Neonate larvae were fed diet based on a flour/milk mix with 1mg dsRNA target 14. Control was water (without dsRNA) in diet. Four replicates of 10 first instar larvae per replicate were performed for each treatment. The insects were assessed for survival as average percentage means atdays -
FIG. 1-MP : Effect of ingestedtarget 27 dsRNA on the survival of Myzus persicae nymphs. First instars were placed in feeding chambers containing 50 μl of liquid diet with 2 μg/μl dsRNA (target 27 or gfp dsRNA control). Per treatment, 5 feeding chambers were set up with 10 instars in each feeding chamber. Number of survivors were assessed at 8 days post start of bioassay. Error bars represent standard deviations. Target MP027: SEQ ID NO 1061; gfp dsRNA: SEQ ID NO 235. -
FIG. 1-NL : Survival of Nilaparvata lugens on liquid artificial diet treated with dsRNA. Nymphs of the first to second larval stage were fed diet supplemented with 2 mg/ml solution of dsRNA targets in separate bioassays: (a) NL002, NL003, NL005, NL010; (b) NL009, NL016; (c) NL014, NL018; (d) NL013, NL015, NL021. Insect survival on targets were compared to diet only and diet with gfp dsRNA control at same concentration. Diet was replaced with fresh diet containing dsRNA every two days. The number of surviving insects were assessed every day -
FIG. 2-NL : Survival of Nilaparvata lugens on liquid artificial diet treated with different concentrations of target dsRNA NL002. Nymphs of the first to second larval stage were fed diet supplemented with 1, 0.2, 0.08, and 0.04 mg/ml (final concentration) of NL002. Diet was replaced with fresh diet containing dsRNA every two days. The numbers of surviving insects were assessed every day. - A C. elegans genome wide library was prepared in the pGN9A vector (WO 01/88121) between two identical T7-promoters and terminators, driving its expression in the sense and antisense direction upon expression of the T7 polymerase, which was induced by IPTG.
- This library was transformed into the bacterial strain AB301-105 (DE3) in 96 well plate format. For the genome wide screening, these bacterial cells were fed to the nuclease deficient C. elegans nuc-1(e1392) strain.
- Feeding the dsRNA produced in the bacterial strain AB301-105 (DE3), to C. elegans nuc-1 (e1392) worms, was performed in a 96 well plate format as follows: nuc-1 eggs were transferred to a separate plate and allowed to hatch simultaneously at 20° C. for synchronization of the L1 generation. 96 well plates were filled with 100 μL liquid growth medium comprising IPTG and with 10 μL bacterial cell culture of OD6001 AB301-105 (DE3) of the C. elegans dsRNA library carrying each a vector with a C. elegans genomic fragment for expression of the dsRNA. To each well, 4 of the synchronized L1 worms were added and were incubated at 25° C. for at least 4 to 5 days. These experiments were performed in quadruplicate. In the
screen 6 controls were used: - pGN29=negative control, wild type
- pGZ1=unc-22=twitcher phenotype
- pGZ18=chitin synthase=embryonic lethal
- pGZ25=pos-1=embryonic lethal
- pGZ59=bli-4D=acute lethal
- ACC=acetyl co-enzym A carboxylase=acute lethal
- After 5 days, the phenotype of the C. elegans nuc-1 (e1392) worms fed with the bacteria producing dsRNA were compared to the phenotype of worms fed with the empty vector (pGN29) and the other controls. The worms that were fed with the dsRNA were screened for lethality (acute or larval) lethality for the parent (Po) generation, (embryonic) lethality for the first filial (F1) generation, or for growth retardation of Po as follows: (i) Acute lethality of Po: L1's have not developed and are dead, this phenotype never gives progeny and the well looks quite empty; (ii) (Larval) lethality of Po: Po died in a later stage than L1, this phenotype also never gives progeny. Dead larvae or dead adult worms are found in the wells; (iii) Lethality for F1: L1's have developed until adult stage and are still alive. This phenotype has no progeny. This can be due to sterility, embryonic lethality (dead eggs on the bottom of well), embryonic arrest or larval arrest (eventually ends up being lethal): (iv) Arrested in growth and growth retardation/delay: Compared to a well with normal development and normal # of progeny.
- For the target sequences presented in Table 1A, it was concluded that dsRNA mediated silencing of the C. elegans target gene in nematodes, such as C. elegans, had a fatal effect on the growth and viability of the worm.
- Subsequent to the above dsRNA silencing experiment, a more detailed phenotyping experiment was conducted in C. elegans in a high throughput format on 24 well plates. The dsRNA library produced in bacterial strain AB301-105 (DE3), as described above, was fed to C. elegans nuc-1 (e1392) worms on 24 well plates as follows: nuc-1 eggs were transferred to a separate plate and allowed to hatch simultaneously at 20 C for synchronization of the L1 generation. Subsequently 100 of the synchronized L1 worms were soaked in a mixture of 500 μL S-complete fed medium, comprising 5 μg/mL cholesterol, 4 μL/mL PEG and 1 mM IPTG, and 500 μL of bacterial cell culture of
OD 6001 AB301-105 (DE3) of the C. elegans dsRNA library carrying each a vector with a C. elegans genomic fragment for expression of the dsRNA. The soaked L1 worms were rolled for 2 hours at 25° C. - After centrifugation and removal of 950 μL of the supernatant, 5 μL of the remaining and resuspended pellet (comprising about 10 to 15 worms) was transferred in the middle of each well of a 24 well plate, filled with a layer of agar LB broth. The inoculated plate was incubated at 25° C. for 2 days. At the adult stage, 1 adult worm was singled and incubated at 25° C. for 2 days for inspection of its progeny. The other adult worms are inspected in situ on the original 24 well plate. These experiments were performed in quadruplicate.
- This detailed phenotypic screen was repeated with a second batch of worms, the only difference being that the worms of the second batch were incubated at 20 C for 3 days.
- The phenotype of the worms fed with C. elegans dsRNA was compared to the phenotype of C. elegans nuc-1 (e1392) worms fed with the empty vector.
- Based on this experiment, it was concluded that silencing the C. elegans target genes as represented in Table 1A had a fatal effect on the growth and viability of the worm and that the target gene is essential to the viability of nematodes. Therefore these genes are good target genes to control (kill or prevent from growing) nematodes via dsRNA mediated gene silencing. Accordingly, the present invention encompasses the use of nematode orthologues of the above C. elegans target gene, to control nematode infestation, such as nematode infestation of plants.
- As described above in Example 1, numerous C. elegans lethal sequences were identified and can be used for identifying orthologues in other species and genera. For example, the C. elegans lethal sequences can be used to identify orthologous D. melanogasters sequences. That is, each C. elegans sequence can be querried against a public database, such as GenBank, for orthologous sequences in D. melanogaster. Potential D. melanogaster orthologues were selected that share a high degree of sequence homology (E value preferably less than or equal to 1E-30) and the sequences are blast reciprocal best hits, the latter means that the sequences from different organisms (e.g. C. elegans and D. melanogaster) are each other's top blast hits. For example, sequence C from C. elegans is compared against sequences in D. melanogaster using BLAST. If sequence C has the D. melanogaster sequence D as best hit and when D is compared to all the sequences of C. elegans, also turns out to be sequence C, then D and C are reciprocal best hits. This criterium is often used to define orthology, meaning similar sequences of different species, having similar function. The D. melanogaster sequence identifiers are represented in Table 1A.
- A. Cloning Partial Gene Sequences from Leptinotarsa decemlineata
- High quality, intact RNA was isolated from 4 different larval stages of Leptinotarsa decemlineata (Colorado potato beetle; source: Jeroen van Schaik, Entocare CV Biologische Gewasbescherming, Postbus 162, 6700 AD Wageningen, the Netherlands) using TRIzol Reagent (Cat. No. 15596-026/15596-018, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions. Genomic DNA present in the RNA preparation was removed by DNase treatment following the manufacturer's instructions (Cat. No. 1700, Promega). cDNA was generated using a commercially available kit (SuperScript™ III Reverse Transcriptase, Cat. No. 18080044, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions.
- To isolate cDNA sequences comprising a portion of the LD001, LD002, LD003, LD006, LD007, LD010, LD011, LD014, LD015, LD016, LC018 and LD027 genes, a series of PCR reactions with degenerate primers were performed using Amplitaq Gold (Cat. No. N8080240, Applied Biosystems) following the manufacturer's instructions.
- The sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-LD, which displays Leptintarsa decemlineata target genes including primer sequences and cDNA sequences obtained. These primers were used in respective PCR reactions with the following conditions: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C. The resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR8/GW/topo vector (Cat. No.
K2500 20, Invitrogen), and sequenced. The sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-LD and are referred to as the partial sequences. The corresponding partial amino acid sequence are represented by the respective SEQ ID NOs as given in Table 3-LD, where the start of the reading frame is indicated in brackets. - B. dsRNA Production of the Leptinotarsa decemlineata Genes
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 Ribomax™ Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- For each of the target genes, the sense T7 template was generated using specific T7 forward and specific reverse primers. The sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-LD. The conditions in the PCR reactions were as follows: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C. The anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above. The sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-LD. The resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO4 precipitation. The generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions. The sense strand of the resulting dsRNA for each of the target genes is given in Table 8-LD. Table 8-LD displays sequences for preparing ds RNA fragments of Leptinotarsa decemlineata target sequences and concatemer sequences, including primer sequences.
- C. Cloning Leptinotarsa decemlineata Genes into Plant Vector pK7GWIWG2D(II)
- Since the mechanism of RNA interference operates through dsRNA fragments, the target nucleotide sequences of the target genes, as selected above, were cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct. These hairpin constructs were generated using the LR recombination reaction between an attL-containing entry clone (see Example 1) and an attR-containing destination vector (=pK7GWIWG2D(II)). The plant vector pK7GWIWG2D(II) was obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement. LR recombination reaction was performed by using LR Clonase™ II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments resulted in a hairpin construct for each of the LD002, LD006, LD007, LD010, LD011, LD014 and LD016 genes, having either the promoter-sense-intron-CmR-intron-antisense orientation, or promoter-antisense-intron-CmR-intron-sense orientation, and wherein the promoter is the plant operable 35S promoter. The binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- For LD002 and LD010, a double digest with restriction enzymes BsoBI & PvuI was done on LD002 cloned into pCR8/GW/topo (see Example 3A). For LD006, LD007, LD011, LD014, LD016 and LD027, a digest with restriction enzyme BsoBI was done on LD006 cloned into pCR8/GW/topo (see Example 3A). The band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) was purified. An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) was added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix was transformed into
Top 10 chemically competent cells. Positive clones were selected by restriction digest analysis. The complete sequence of the hairpin construct for: - LD002 (antisense-intron-CmR-intron-sense) is set forth in SEQ ID NO 240;
- LD006 (sense-intron-CmR-intron-antisense) is set forth in SEQ ID NO 241;
- LD007 sense-intron-CmR-intron-antisense) is set forth in SEQ ID NO 242;
- LD010 (antisense-intron-CmR-intron-sense) is set forth in SEQ ID NO 243;
- LD011 (sense-intron-CmR-intron-antisense) is set forth in SEQ ID NO 244;
- LD014 (sense-intron-CmR-intron-antisense) is set forth in SEQ ID NO 245;
- LD016 (antisense-intron-CmR-intron-sense) is set forth in SEQ ID NO 246;
- LD027 (sense-intron-CmR-intron-antisense) is set forth in SEQ ID NO 2486.
- Table 9-LD provides complete sequences for each hairpin construct.
- D. Screening dsRNA Targets Using Artificial Diet for Activity Against Leptinotarsa decemlineata
- Artificial diet for the Colorado potato beetle was prepared as follows (adapted from Gelman et al., 2001, J. Ins. Sc., vol. 1, no. 7, 1-10): water and agar were autoclaved, and the remaining ingredients (shown in Table A below) were added when the temperature dropped to 55° C. At this temperature, the ingredients were mixed well before the diet was aliquoted into 24-well plates (Nunc) with a quantity of 1 ml of diet per well. The artificial diet was allowed to solidify by cooling at room temperature. Diet was stored at 4° C. for up to three weeks.
-
TABLE A Ingredients for Artificial diet Ingredients Volume for 1 L water 768 ml agar 14 g rolled oats 40 g Torula yeast 60 g lactalbumin hydrolysate 30 g casein 10 g fructose 20 g Wesson salt mixture 4 g tomato fruit powder 12.5 g potato leaf powder 25 g b-sitosterol 1 g sorbic acid 0.8 g methyl paraben 0.8 g Vanderzant vitamin mix 12 g neomycin sulfate 0.2 g aureomycin 0.130 g rifampicin 0.130 g chloramphenicol 0.130 g nystatin 0.050 g soybean oil 2 ml wheat germ oil 2 ml - Fifty μl of a solution of dsRNA at a concentration of 1 mg/ml was applied topically onto the solid artificial diet in the wells of the multiwell plate. The diet was dried in a laminair flow cabin. Per treatment, twenty-four Colorado potato beetle larvae (2nd stage), with two insects per well, were tested. The plates were stored in the insect rearing chamber at 25±2° C., 60% relative humidity, with a 16:8 hours light:dark photoperiod. The beetles were assessed as live or dead every 1, 2 or 3 days. After seven days, for targets LD006, LD007, LD010, LD011, and LD014, the diet was replaced with fresh diet with topically applied dsRNA at the same concentration (1 mg/ml); for targets LD001, LD002, LD003, LD015, and LD016, the diet was replaced with fresh diet only. The dsRNA targets were compared to diet only or diet with topically applied dsRNA corresponding to a fragment of the GFP (green fluorescent protein) coding sequence (SEQ ID NO 235).
- Feeding artificial diet containing intact naked dsRNAs to L. decemlineata larvae resulted in significant increases in larval mortalities as indicated in two separate bioassays (FIGS. 1LD-2LD).
- All dsRNAs tested resulted ultimately in 100% mortality after 7 to 14 days. Diet with or without GFP dsRNA sustained the insects throughout the bioassays with very little or no mortality.
- Typically, in all assays observed, CPB second-stage larvae fed normally on diet with or without dsRNA for 2 days and molted to the third larval stage. At this new larval stage the CPB were observed to reduce significantly or stop altogether their feeding, with an increase in mortality as a result.
- E. Bioassay of dsRNA Targets Using Potato Leaf Discs for Activity Against the Leptinotarsa decemlineata
- An alternative bioassay method was employed using potato leaf material rather than artificial diet as food source for CPB. Discs of approximately 1.1 cm in diameter (or 0.95 cm2) were cut out off leaves of 2 to 3-week old potato plants using a suitably-sized cork borer. Treated leaf discs were prepared by applying 20 μl of a 10 ng/μl solution of target LD002 dsRNA or control gfp dsRNA on the adaxial leaf surface. The leaf discs were allowed to dry and placed individually in 24 wells of a 24-well multiplate (Nunc). A single second-larval stage CPB was placed into each well, which was then covered with tissue paper and a multiwell plastic lid. The plate containing the insects and leaf discs were kept in an insect chamber at 28° C. with a photoperiod of 16 h light/8 h dark. The insects were allowed to feed on the leaf discs for 2 days after which the insects were transferred to a new plate containing fresh treated leaf discs. Thereafter, the insects were transferred to a plate containing untreated leaf discs every day until
day 7. Insect mortality and weight scores were recorded. - Feeding potato leaf discs with surface-applied intact naked dsRNA of target LD002 to L. decemlineata larvae resulted in a significant increase in larval mortalities (i.e. at
day 7 all insects were dead; 100% mortality) whereas control gfp dsRNA had no effect on CPB survival. Target LD002 dsRNA severely affected the growth of the larvae after 2 to 3 days whereas the larvae fed with gfp dsRNA at the same concentration developed as normal (FIG. 3-LD ). - F. Screening Shorter Versions of dsRNAs Using Artificial Diet for Activity Against Leptinotarsa decemlineata
- This example exemplifies the finding that shorter (60 or 100 bp) dsRNA fragments on their own or as concatemer constructs are sufficient in causing toxicity towards the Colorado potato beetle.
- LD014, a target known to induce lethality in Colorado potato beetle, was selected for this example. This gene encodes a V-ATPase subunit E (SEQ ID NO 15).
- A 100 base pair fragment, LD014_F1, at position 195-294 on SEQ ID NO 15 (SEQ ID NO 159) and a 60 base pair fragment, LD014_F2, at position 235-294 on SEQ ID NO 15 (SEQ ID NO 160) were further selected. See also Table 7-LD.
- Two concatemers of 300 base pairs, LD014_C1 and LD014_C2, were designed (SEQ ID NO 161 and SEQ ID NO 162). LD014_C1 contained 3 repeats of the 100 base pair fragment described above (SEQ ID NO 159) and LD014_C2 contained 5 repeats of the 60 base pair fragment described above (SEQ ID NO 160). See also Table 7-LD.
- The fragments LD014_F1 and LD014_F2 were synthesized as sense and antisense primers. These primers were annealed to create the double strands DNA molecules prior to cloning. XbaI and XmaI restrictions sites were included at the 5′ and 3′ ends of the primers, respectively, to facilitate the cloning.
- The concatemers were made as 300 base pairs synthetic genes. XbaI and XmaI restrictions sites were included at the 5′ and 3′ ends of the synthetic DNA fragments, respectively, to facilite the cloning.
- The 4 DNA molecules, i.e. the 2 single units (LD014_F1 & LD014_F2) and the 2 concatemers (LD014_C1 & LD014_C2), were digested with XbaI and XmaI and subcloned in pBluescriptII SK+ linearised by XbaI and XmaI digests, resulting in recombinant plasmids p1, p2, p3, & p4, respectively.
- Double-stranded RNA production: dsRNA was synthesized using the commercially available kit T7 Ribomax™ Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter. For LD014_F1, the sense T7 template was generated using the specific T7 forward primer oGBM159 and the specific reverse primer oGBM164 (represented herein as SEQ ID NO 204 and SEQ ID NO 205, respectively) in a PCR reaction with the following conditions: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C. The anti-sense T7 template was generated using the specific forward primer oGBM163 and the specific T7 reverse primer oGBM160 (represented herein as SEQ ID NO 206 and SEQ ID NO 207, respectively) in a PCR reaction with the same conditions as described above. The resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO4 precipitation. The generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, Dnase and Rnase treated, and purified by sodium acetate, following the manufacturer's instructions. The sense strand of the resulting dsRNA is herein represented by SEQ ID NO 203.
- For LD014_F2, the sense T7 template was generated using the specific T7 forward primer oGBM161 and the specific reverse primer oGBM166 (represented herein as SEQ ID NO 209 and SEQ ID NO 210, respectively) in a PCR reaction with the following conditions: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C. The anti-sense T7 template was generated using the specific forward primer oGBM165 and the specific T7 reverse primer oGBM162 (represented herein as SEQ ID NO 211 and SEQ ID NO 212, respectively) in a PCR reaction with the same conditions as described above. The resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO4 precipitation. The generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, Dnase and Rnase treated, and purified by sodium acetate, following the manufacturer's instructions. The sense strand of the resulting dsRNA is herein represented by SEQ ID NO 208.
- Also for the concatemers, separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter. The recombinant plasmids p3 and p4 containing LD014_C1 & LD014_C2 were linearised with XbaI or XmaI, the two linear fragments for each construct purified and used as template for the in vitro transcription assay, using the T7 promoters flanking the cloning sites. Double-stranded RNA was prepared by in vitro transcription using the 17 RiboMAX™ Express RNAi System (Promega). The sense strands of the resulting dsRNA for LD014_C1 and LD014_C2 are herein represented by SEQ ID NO 213 and 214, respectively.
- Shorter sequences of target LD014 and concatemers were able to induce lethality in Leptinotarsa decemlineata, as shown in
FIG. 4-LD . - G. Screening dsRNAs at Different Concentrations Using Artificial Diet for Activity Against Leptinotarsa decemlineata
- Fifty μl of a solution of dsRNA at serial ten-fold concentrations from 1 μg/μl (for target LD027 from 0.1 μg/μl) down to 0.01 ng/μl was applied topically onto the solid artificial diet in the wells of a 24-well plate (Nunc). The diet was dried in a laminair flow cabin. Per treatment, twenty-four Colorado potato beetle larvae (2nd stage), with two insects per well, were tested. The plates were stored in the insect rearing chamber at 25±2° C., 60% relative humidity, with a 16:8 hours light:dark photoperiod. The beetles were assessed as live or dead at regular intervals up to
day 14. After seven days, the diet was replaced with fresh diet with topically applied dsRNA at the same concentrations. The dsRNA targets were compared to diet only. - Feeding artificial diet containing intact naked dsRNAs of different targets to L. decemlineata larvae resulted in high larval mortalities at concentrations as low as between 0.1 and 10 ng dsRNA/μl as shown in
FIG. 5-LD . - H. Adults are Extremely Susceptible to Orally Ingested dsRNA Corresponding to Target Genes.
- The example provided below highlights the finding that adult insects (and not only insects of the larval stage) are extremely susceptible to orally ingested dsRNA corresponding to target genes.
- Four targets were chosen for this experiment:
targets diameter 3 cm) in order to make sure that all insects have ingested equal amounts of food and thus received equal doses of dsRNA. The following day, each adult was again fed four treated leaf discs as described above. On the third day, all ten adults per treatment were collected and placed together in a cage consisting of a plastic box (dimensions 30 cm×20 cm×15 cm) with a fine nylon mesh built into the lid to provide good aeration. Inside the box, some moistened filter paper was placed in the base. Some (untreated) potato foliage was placed on top of the paper to maintain the adults during the experiment. Fromday 5, regular assessments were carried out to count the number of dead, alive (mobile) and moribund insects. For insect moribundity, adults were laid on their backs to check whether they could right themselves within several minutes; an insect was considered moribund only if it was not able to turn onto its front. - Clear specific toxic effects of double-stranded RNA corresponding to different targets towards adults of the Colorado potato beetle, Leptinotarsa decemlineata, were demonstrated in this experiment (
FIG. 6-LD ). Double-stranded RNA corresponding to a gfp fragment showed no toxicity towards CPB adults on the day of the final assessment (day 19). This experiment clearly showed that the survival of CPB adults was severely reduced only after a few days of exposure to dsRNA when delivered orally. For example, fortarget 10, onday day day 9 all adults were observed dead. - As a consequence of this experiment, the application of target double-stranded RNAs against insect pests may be broadened to include the two life stages of an insect pest (i.e. larvae and adults) which could cause extensive crop damage, as is the case with the Colorado potato beetle.
- I. Laboratory Trials to Test Transgenic Potato Plants Against Larvae of the Colorado Potato Beetle, Leptinotarsa decemlineata
- The example provided below is an exemplification of the finding that transgenic potato plants expressing CPB-gene-specific hairpin RNAs adversely affected Colorado potato beetles.
- Stably transformed potato plants were obtained using an adapted protocol received through Julie Gilbert at the NSF Potato Genome Project (http://www.potatogenome.org/nsf5). Stem internode explants of potato ‘Line V’ (obtained from the Laboratory of Plant Breeding at PRI Wageningen, the Netherlands) which was derived from the susceptible diploid Solanum tuberosum 6487-9 were used as starting material for transformation.
- In vitro derived explants were inoculated with Agrobacterium tumifaciens C58C1RifR containing the hairpin constructs. After three days co-cultivation the explants were put onto a selective medium containing 100 mg/l Kanamycin and 300 mg/l Timentin. After 6 weeks post-transformation the first putative shoots were removed and rooted on selective medium. Shoots originating from different explants were treated as independent events, shoots originating from the same callus were termed ‘siblings’ until their clonal status can be verified by Southerns, and nodal cuttings of a shoot were referred to as ‘clones’.
- The transgenic status of the rooting shoots was checked either by GFP fluorescence or by plus/minus PCR for the target sequence. Positive shoots were then clonally propagated in tissue culture to ensure enough replicates were available for the Colorado potato beetle assay with the first plants being available to test fourteen weeks post transformation.
- Transgenic potato plants were grown to the 8-12 unfolded leaf stage in a plant growth room chamber with the following conditions: 23±2° C., 60% relative humidity, 16:8 hour light:dark photoperiod. The plants were caged by placing a 500 ml bottle upside down over the plant with the neck of the bottle firmly placed in the soil in a pot and base cut open and covered with a fine nylon mesh to permit aeration, reduce condensation inside and prevent larval escape.
- In this bioassay, seven neonate CPB larvae were placed on the foliage of each transgenic potato plant. Six transgenic potato siblings per transformation event (i.e. plants derived from one callus) of the hairpin construct LD002 (comprising SEQ ID NO 240) (labeled as pGBNB001/28A to F) and empty vector (labeled as pK7GWIWG2D(II)/11A to F), and two wild type plants were tested. Temperature, humidity and lighting conditions were the same as described above. At day 7 (7 days after the start of the bioassay), the number of survivors were counted and the average weight of larval survivors from each plant recorded. Data was analysed using the Spotfire® DecisionSite® 9.0 software (Version 17.1.779) from Spotfire Inc.
- In this experiment, all larvae of the Colorado potato beetle on two sibling plants (labeled as pGBNB001/28A and pGBNB001/28F), harbouring hairpin construct LD002, generated from a single transformation event, were dead on day 7 (
FIG. 7-LD ). Feeding damage by CPB larvae on these two plants was very low when compared to the empty vector transgenic plants or wild type line V plants. - A. Cloning of a Partial Sequence of the Phaedon cochleariae (Mustard Leaf Beetle) PC001, PC003, PC005, PC010, PC014, PC016 and PC027 genes via family PCR High quality, intact RNA was isolated from the third larval stage of Phaedon cochleariae (mustard leaf beetle; source: Dr. Caroline Muller, Julius-von-Sachs-Institute for Biosciences, Chemical Ecology Group, University of Wuerzburg, Julius-von-Sachs-
Platz 3, D-97082 Wuerzburg, Germany) using TRIzol Reagent (Cat. No. 15596-026/15596-018, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions. Genomic DNA present in the RNA preparation was removed by DNase (Cat. No. 1700, Promega) treatment following the manufacturer's instructions. cDNA was generated using a commercially available kit (SuperScript™ III Reverse Transcriptase, Cat. No. 18080044, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions. - To isolate cDNA sequences comprising a portion of the PC001, PC003, PC005, PC010, PC014, PC016 and PC027 genes, a series of PCR reactions with degenerate primers were performed using Amplitaq Gold (Cat. No. N8080240, Applied Biosystems) following the manafacturer's instructions.
- The sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-PC. These primers were used in respective PCR reactions with the following conditions: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C. The resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR4/TOPO vector (Cat. No. K4530-20, Invitrogen) and sequenced. The sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-PC and are referred to as the partial sequences.
- The corresponding partial amino acid sequence are represented by the respective SEQ ID NOs as given in Table 3-PC. Table 3-PC provides amino acid sequences of cDNA clones, and the start of the reading frame is indicated in brackets.
- B. dsRNA Production of the Phaedon cochleariae Genes
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 Ribomax™ Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- For each of the target genes, the sense T7 template was generated using specific T7 forward and specific reverse primers. The sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-PC. Table 8-PC provides details for preparing ds RNA fragments of Phaedon cochleariae target sequences, including primer sequences.
- The conditions in the PCR reactions were as follows: 1 minute at 95° C., followed by 20 cycles of 30 seconds at 95° C., 30 seconds at 60° C. and 1 minute at 72° C., followed by 15 cycles of 30 seconds at 95° C., 30 seconds at 50° C. and 1 minute at 72° C. followed by 10 minutes at 72° C. The anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above. The sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-PC. The resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO4 precipitation. The generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions. The sense strand of the resulting dsRNA for each of the target genes is given in Table 8-PC.
- C. Recombination of the Phaedon cochleariae (Mustard Leaf Beetle) Genes into the Plant Vector pK7GWIWG2D(II)
- Since the mechanism of RNA interference operates through dsRNA fragments, the target nucleotide sequences of the target genes, as selected above, were cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct. These hairpin constructs were generated using the LR recombination reaction between an attL-containing entry clone (see Example 4A) and an attR-containing destination vector (=pK7GWIWG2D(1)). The plant vector pK7GWIWG2D(II) was obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement. LR recombination reaction was performed by using LR Clonase™ II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments resulted in a hairpin construct for each of the PC001, PC010, PC014, PC016 and PC027 genes, having the promoter-sense-intron-CmR-intron-antisense orientation, and wherein the promoter is the plant operable 35S promoter. The binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- Restriction enzyme digests were carried out on pCR8/GW/TOPO plasmids containing the different targets (see Example 4B): for PC001, a double digest with BsoBI & PvuI; for PC010, a double digest with PvuI & PvuII; for PC014, a triple digest with HincII, PvuI & XhoI; for PC016, a single digest with ApaLI; for PC027, a double digest with AvaI & DrdI. The band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) was purified. An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) was added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix was transformed into
Top 10 chemically competent cells. Positive clones were selected by restriction digest analyses. The complete sequence of the hairpin construct for: - PC001 (sense-intron-CmR-intron-antisense) is represented in SEQ ID NO 508;
- PC010 (sense-intron-CmR-intron-antisense) is represented in SEQ ID NO 509;
- PC014 (sense-intron-CmR-intron-antisense) is represented in SEQ ID NO 510;
- PC016 (sense-intron-CmR-intron-antisense) is represented in SEQ ID NO 511;
- PC027 (sense-intron-CmR-intron-antisense) is represented in SEQ ID NO 512;
- Table 9-PC provides sequences for each hairpin construct.
- D. Laboratory Trials to Test dsRNA Targets, Using Oilseed Rape Leaf Discs for Activity Against Phaedon cochleariae Larvae
- The example provided below is an exemplification of the finding that the mustard leaf beetle (MLB) larvae are susceptible to orally ingested dsRNA corresponding to own target genes.
- To test the different double-stranded RNA samples against MLB larvae, a leaf disc assay was employed using oilseed rape (Brassica napus variety SW Oban; source: Nick Balaam, Sw Seed Ltd., 49 North Road, Abington, Cambridge, CB1 6AS, UK) leaf material as food source. The insect cultures were maintained on the same variety of oilseed rape in the insect chamber at 25±2° C. and 60±5% relative humidity with a photoperiod of 16 h light/8 h dark. Discs of approximately 1.1 cm in diameter (or 0.95 cm2) were cut out off leaves of 4- to 6-week old rape plants using a suitably-sized cork borer. Double-stranded RNA samples were diluted to 0.1 μg/μl in Milli-Q water containing 0.05% Triton X-100. Treated leaf discs were prepared by applying 25 μl of the diluted solution of target PC001, PC003, PC005, PC010, PC014, PC016, PC027 dsRNA and control gfp dsRNA or 0.05% Triton X-100 on the adaxial leaf surface. The leaf discs were left to dry and placed individually in each of the 24 wells of a 24-well multiplate containing 1 ml of gellified 2% agar which helps to prevent the leaf disc from drying out. Two neonate MLB larvae were placed into each well of the plate, which was then covered with a multiwell plastic lid. The plate (one treatment containing 48 insects) was divided into 4 replicates of 12 insects per replicate (each row). The plate containing the insects and leaf discs were kept in an insect chamber at 25±2° C. and 60±5% relative humidity with a photoperiod of 16 h light/8 h dark. The insects were fed leaf discs for 2 days after which they were transferred to a new plate containing freshly treated leaf discs. Thereafter, 4 days after the start of the bioassay, the insects from each replicate were collected and transferred to a Petri dish containing untreated fresh oilseed rape leaves. Larval mortality and average weight were recorded at
days - P. cochleariae larvae fed on intact naked target dsRNA-treated oilseed rape leaves resulted in significant increases in larval mortalities for all targets tested, as indicated in
FIG. 1( a). Tested double-stranded RNA for target PC010 led to 100% larval mortality atday 9 and for target PC027 atday 11. For all other targets, significantly high mortality values were reached atday 11 when compared to control gfp dsRNA, 0.05% Trition X-100 alone or untreated leaf only: (average value in percentage confidence interval with alpha 0.05) PC001 (94.4±8.2); PC003 (86.1±4.1); PC005 (83.3±7.8); PC014 (63.9±20.6); PC016 (75.0±16.8); gfp dsRNA (11.1±8.2); 0.05% Triton X-100 (19.4±10.5); leaf only (8.3±10.5). - Larval survivors were assessed based on their average weight. For all targets tested, the mustard leaf beetle larvae had significantly reduced average weights after
day 4 of the bioassay; insects fed control gfp dsRNA or 0.05% Triton X-100 alone developed normally, as for the larvae on leaf only (FIG. 1( b)-PC). - E. Laboratory Trials to Screen dsRNAs at Different Concentrations Using Oilseed Rape Leaf Discs for Activity Against Phaedon cochleariae Larvae
- Twenty-five μl of a solution of dsRNA from target PC010 or PC027 at serial ten-fold concentrations from 0.1 μg/μl down to 0.1 ng/μl was applied topically onto the oilseed rape leaf disc, as described in Example 4D above. As a negative control, 0.05% Triton X-100 only was administered to the leaf disc. Per treatment, twenty-four mustard leaf beetle neonate larvae, with two insects per well, were tested. The plates were stored in the insect rearing chamber at 25±2° C., 60±5% relative humidity, with a 16:8 hours light:dark photoperiod. At
day 2, the larvae were transferred on to a new plate containing fresh dsRNA-treated leaf discs. Atday 4 for target PC010 andday 5 for target PC027, insects from each replicate were transferred to a Petri dish containing abundant untreated leaf material. The beetles were assessed as live or dead ondays - Feeding oilseed rape leaf discs containing intact naked dsRNAs of the two different targets, PC010 and PC027, to P. cochleariae larvae resulted in high mortalities at concentrations down to as low as 1 ng dsRNA/μl solution, as shown in
FIGS. 2 (a) and (b). Average mortality values in percentage±confidence interval with alpha 0.05 for different concentrations of dsRNA for target PC010 atday day - F. Laboratory Trials of Myzus periscae (Green Peach Aphid) Infestation on Transgenic Arabidopsis thaliana Plants
- Arabidopsis thaliana plants were transformed using the floral dip method (Clough and Bent (1998) Plant Journal 16:735-743). Aerial parts of the plants were incubated for a few seconds in a solution containing 5% sucrose, resuspended Agrobacterium tumefaciens strain C58C1 Rif cells from an overnight culture and 0.03% of the surfactant Silwet L-77. After inoculation, plants were covered for 16 hours with a transparent plastic to maintain humidity. To increase the transformation efficiency, the procedure was repeated after one week. Watering was stopped as seeds matured and dry seeds were harvested and cold-treated for two days. After sterilization, seeds were plated on a kanamycin-containing growth medium for selection of transformed plants.
- The selected plants are transferred to soil for optimal T2 seed production.
- Transgenic Arabidopsis thaliana plants are selected by allowing the segregating T2 seeds to germinate on appropriate selection medium. When the roots of these transgenics are well-established they are then transferred to fresh artificial growth medium or soil and allowed to grow under optimal conditions. Whole transgenic plants are tested against nymphs of the green peach aphid (Myzus persicae) to show (1) a significant resistance to plant damage by the feeding nymph, (2) increased nymphal mortality, and/or (3) decreased weight of nymphal survivors (or any other aberrant insect development).
- A. Cloning Epilachna varivetis Partial Gene Sequences
- High quality, intact RNA was isolated from 4 different larval stages of Epilachna varivetis (Mexican bean beetle; source: Thomas Dorsey, Supervising Entomologist, New Jersey Department of Agriculture, Division of Plant Industry, Bureau of Biological Pest Control, Phillip Alampi Beneficial Insect Laboratory,
PO Box 330, Trenton, N.J. 08625-0330, USA) using TRIzol Reagent (Cat. No. 15596-026/15596-018, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions. Genomic DNA present in the RNA preparation was removed by DNase treatment following the manafacturer's instructions (Cat. No. 1700, Promega). cDNA was generated using a commercially available kit (SuperScript™ III Reverse Transcriptase, Cat. No. 18080044, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions. - To isolate cDNA sequences comprising a portion of the EV005, EV009, EV010, EV015 and EV016 genes, a series of PCR reactions with degenerate primers were performed using Amplitaq Gold (Cat. No. N8080240, Applied Biosystems) following the manufacturer's instructions.
- The sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-EV, which displays Epilachna varivetis target genes including primer sequences and cDNA sequences obtained. These primers were used in respective PCR reactions with the following conditions: for EV005 and EV009, 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 50° C. and 1
minute 30 seconds at 72° C., followed by 7 minutes at 72° C.; for EV014, 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 53° C. and 1 minute at 72° C., followed by 7 minutes at 72° C.; for EV010 and EV016, 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 1minute 40 seconds at 72° C., followed by 7 minutes at 72° C. The resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR4/TOPO vector (Cat. No. K4530-20, Invitrogen), and sequenced. The sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-EV and are referred to as the partial sequences. The corresponding partial amino acid sequences are represented by the respective SEQ ID NOs as given in Table 3-EV, where the start of the reading frame is indicated in brackets. - B. dsRNA Production of the Epilachna varivetis Genes
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 Ribomax™ Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- For each of the target genes, the sense T7 template was generated using specific T7 forward and specific reverse primers. The sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-EV.
- The conditions in the PCR reactions were as follows: 1 minute at 95° C., followed by 20 cycles of 30 seconds at 95° C., 30 seconds at 60° C. and 1 minute at 72° C., followed by 15 cycles of 30 seconds at 95° C., 30 seconds at 50° C. and 1 minute at 72° C. followed by 10 minutes at 72° C. The anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above. The sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-EV. The resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO4 precipitation. The generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions. The sense strand of the resulting dsRNA for each of the target genes is given in Table 8-EV.
- C. Recombination of the Epilachna varivetis Genes into the Plant Vector pK7GWIWG2D(II)
- Since the mechanism of RNA interference operates through dsRNA fragments, the target nucleotide sequences of the target genes, as selected above, are cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct. These hairpin constructs are generated using the LR recombination reaction between an attL-containing entry clone (see Example 5A) and an attR-containing destination vector (=pK7GWIWG2D(II)). The plant vector pK7GWIWG2D(II) is obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement. LR recombination reaction is performed by using LR Clonase™ II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments result in a hairpin construct for each of the target genes, having the promoter-sense-intron-CmR-intron-antisense orientation, and wherein the promoter is the plant operable 35S promoter. The binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- Restriction enzyme digests were carried out on pCR8/GW/TOPO plasmids containing the different targets (see Example B). The band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) is purified. An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) is added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix is transformed into
Top 10 chemically competent cells. Positive clones are selected by restriction digest analyses. - D. Laboratory Trials to Test dsRNA Targets Using Bean Leaf Discs for Activity Against Epilachna varivetis Larvae
- The example provided below is an exemplification of the finding that the Mexican bean beetle (MBB) larvae are susceptible to orally ingested dsRNA corresponding to own target genes.
- To test the different double-stranded RNA samples against MBB larvae, a leaf disc assay was employed using snap bean (Phaseolus vulgaris variety Montano; source: Aveve NV, Belgium) leaf material as food source. The same variety of beans was used to maintain insect cultures in the insect chamber at 25±2° C. and 60±5% relative humidity with a photoperiod of 16 h light/8 h dark. Discs of approximately 1.1 cm in diameter (or 0.95 cm2) were cut out off leaves of 1- to 2-week old bean plants using a suitably-sized cork borer. Double-stranded RNA samples were diluted to 1 μg/μl in Milli-Q water containing 0.05% Triton X-100. Treated leaf discs were prepared by applying 25 μl of the diluted solution of target Ev005, Ev010, Ev015, Ev016 dsRNA and control gfp dsRNA or 0.05% Triton X-100 on the adaxial leaf surface. The leaf discs were left to dry and placed individually in each of the 24 wells of a 24-well multiplate containing 1 ml of gellified 2% agar which helps to prevent the leaf disc from drying out. A single neonate MBB larva was placed into each well of a plate, which was then covered with a multiwell plastic lid. The plate was divided into 3 replicates of 8 insects per replicate (row). The plate containing the insects and leaf discs were kept in an insect chamber at 25±2° C. and 60±5% relative humidity with a photoperiod of 16 h light/8 h dark. The insects were fed on the leaf discs for 2 days after which the insects were transferred to a new plate containing freshly treated leaf discs. Thereafter, 4 days after the start of the bioassay, the insects were transferred to a petriplate containing untreated fresh bean leaves every day until
day 10. Insect mortality was recorded atday 2 and every other day thereafter. - Feeding snap bean leaves containing surface-applied intact naked target dsRNAs to E. varivestis larvae resulted in significant increases in larval mortalities, as indicated in
FIG. 1 . Tested double-stranded RNAs of targets Ev010, Ev005, & Ev016 led to 100% mortality after 8 days, whereas dsRNA of target Ev005 took 10 days to kill all larvae. The majority of the insects fed on treated leaf discs containing control gfp dsRNA or only the surfactant Triton X-100 were sustained throughout the bioassay (FIG. 1-EV ). - E. Laboratory Trials to Test dsRNA Targets Using Bean Leaf Discs for Activity Against Epilachna varivestis Adults
- The example provided below is an exemplification of the finding that the Mexican bean beetle adults are susceptible to orally ingested dsRNA corresponding to own target genes.
- In a similar bioassay set-up as for Mexican bean beetle larvae, adult MBBs were tested against double-stranded RNAs topically-applied to bean leaf discs. Test dsRNA from each target Ev010, Ev015 and Ev016 was diluted in 0.05% Triton X-100 to a final concentration of 0.1 μg/μl. Bean leaf discs were treated by topical application of 30 μl of the test solution onto each disc. The discs were allowed to dry completely before placing each on a slice of gellified 2% agar in each well of a 24-well multiwell plate. Three-day-old adults were collected from the culture cages and fed nothing for 7-8 hours prior to placing one adult to each well of the bioassay plate (thus 24 adults per treatment). The plates were kept in the insect rearing chamber (under the same conditions as for MBB larvae for 24 hours) after which the adults were transferred to a new plate containing fresh dsRNA-treated leaf discs. After a further 24 hours, the adults from each treatment were collected and placed in a plastic box with
dimensions 30 cm×15 cm×10 cm containing two potted and untreated 3-week-old bean plants. Insect mortality was assessed fromday 4 untilday 11. - All three target dsRNAs (Ev010, Ev015 and Ev016) ingested by adults of Epilachna varivestis resulted in significant increases in mortality from day 4 (4 days post bioassay start), as shown in
FIG. 2-EV(a) . Fromday 5, dramatic changes in feeding patterns were observed between insects fed initially with target-dsRNA-treated bean leaf discs and those that were fed discs containing control gfp dsRNA or surfactant Triton X-100. Reductions in foliar damage by MBB adults of untreated bean plants were clearly visible for all three targets when compared to gfp dsRNA and surfactant only controls, albeit at varying levels; insects fedtarget 15 caused the least damage to bean foliage (FIG. 2-EV(b) ). - A. Cloning Anthonomus grandis Partial Sequences
- High quality, intact RNA was isolated from the 3 instars of Anthonomus grandis (cotton boll weevil; source: Dr. Gary Benzon, Benzon Research Inc., 7 Kuhn Drive, Carlisle, Pa. 17013, USA) using TRIzol Reagent (Cat. No. 15596-026/15596-018, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions. Genomic DNA present in the RNA preparation was removed by DNase treatment following the manafacturer's instructions (Cat. No. 1700, Promega). cDNA was generated using a commercially available kit (SuperScript™ III Reverse Transcriptase, Cat. No. 18080044, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions.
- To isolate cDNA sequences comprising a portion of the AG001, AG005, AG010, AG014 and AG016 genes, a series of PCR reactions with degenerate primers were performed using Amplitaq Gold (Cat. No. N8080240, Applied Biosystems) following the manafacturer's instructions.
- The sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-AG. These primers were used in respective PCR reactions with the following conditions: for AG001, AG005 and AG016, 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 50° C. and 1 minute and 30 seconds at 72° C., followed by 7 minutes at 72° C.; for AG010, 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 2 minutes and 30 seconds at 72° C., followed by 7 minutes at 72° C.; for AG014, 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 55° C. and 1 minute at 72° C., followed by 7 minutes at 72° C. The resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR8/GW/TOPO vector (Cat. No. K2500-20, Invitrogen) and sequenced. The sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-AG and are referred to as the partial sequences. The corresponding partial amino acid sequence are represented by the respective SEQ ID NOs as given in Table 3-AG.
- B. dsRNA Production of the Anthonomus grandis (Cotton Boll Weevil) genes
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 Ribomax™ Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- For each of the target genes, the sense T7 template was generated using specific T7 forward and specific reverse primers. The sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-AG. A touchdown PCR was performed as follows: 1 minute at 95° C., followed by 20 cycles of 30 seconds at 95° C., 30 seconds at 60° C. with a decrease in temperature of 0.5° C. per cycle and 1 minute at 72° C., followed by 15 cycles of 30 seconds at 95° C., 30 seconds at 50° C. and 1 minute at 72° C., followed by 10 minutes at 72° C. The anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above. The sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-AG. The resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO4 precipitation. The generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions. The sense strand of the resulting dsRNA for each of the target genes is given in Table 8-AG.
- C. Recombination of Anthonomus grandis Genes into the Plant Vector pK7GWIWG2D(II)
- Since the mechanism of RNA interference operates through dsRNA fragments, the target nucleotide sequences of the target genes, as selected above, are cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct. These hairpin constructs are generated using the LR recombination reaction between an attL-containing entry clone (see Example 6A) and an attR-containing destination vector (=pK7GWIWG2D(II)). The plant vector pK7GWIWG2D(II) is obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement. LR recombination reaction is performed by using LR Clonase™ II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments result in a hairpin construct for each of the target genes, having the promoter-sense-intron-CmR-intron-antisense orientation, and wherein the promoter is the plant operable 35S promoter. The binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- Restriction enzyme digests were carried out on pCR8/GW/TOPO plasmids containing the different targets (see Example 6B). The band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) is purified. An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) is added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix is transformed into
Top 10 chemically competent cells. Positive clones are selected by restriction digest analyses. - D. Laboratory Trials to Test Escherichia coli Expressing dsRNA Targets Against Anthonomus grandis
- Whole plants are sprayed with suspensions of chemically induced bacteria expressing dsRNA prior to feeding the plants to CBW. The are grown from in a plant growth room chamber. The plants are caged by placing a 500 ml plastic bottle upside down over the plant with the neck of the bottle firmly placed in the soil in a pot and the base cut open and covered with a fine nylon mesh to permit aeration, reduce condensation inside and prevent insect escape. CBW are placed on each treated plant in the cage. Plants are treated with a suspension of E. coli AB301-105(DE3) harboring the pGXXX0XX plasmids or pGN29 plasmid. Different quantities of bacteria are applied to the plants: for
instance 66, 22, and 7 units, where one unit is defined as 109 bacterial cells in 1 ml of a bacterial suspension at optical density value of 1 at 600 nm wavelength. In each case, a total volume of between 1 and 10 ml s sprayed on the plant with the aid of a vaporizer. One plant is used per treatment in this trial. The number of survivors are counted and the weight of each survivor recorded. - Spraying plants with a suspension of E. coli bacterial strain AB301-105(DE3) expressing target dsRNA from pGXXX0XX lead to a dramatic increase in insect mortality when compared to pGN29 control. These experiments show that double-stranded RNA corresponding to an insect gene target sequence produced in either wild-type or RNaseIII-deficient bacterial expression systems is toxic towards the insect in terms of substantial increases in insect mortality and growth/development delay for larval survivors. It is also clear from these experiments that an exemplification is provided for the effective protection of plants/crops from insect damage by the use of a spray of a formulation consisting of bacteria expressing double-stranded RNA corresponding to an insect gene target.
- A. Cloning Tribolium castaneum Partial Sequences
- High quality, intact RNA was isolated from all the different insect stages of Tribolium castaneum (red flour beetle; source: Dr. Lara Senior, Insect Investigations Ltd., Capital Business Park, Wentloog, Cardiff, CF3 2PX, Wales, UK) using TRIzol Reagent (Cat. No. 15596-026/15596-018, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions. Genomic DNA present in the RNA preparation was removed by DNase treatment following the manafacturer's instructions (Cat. No. 1700, Promega). cDNA was generated using a commercially available kit (SuperScript™ III Reverse Transcriptase, Cat. No. 18080044, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions.
- To isolate cDNA sequences comprising a portion of the TC001, TC002, TC010, TC014 and TC015 genes, a series of PCR reactions with degenerate primers were performed using Amplitaq Gold (Cat. No. N8080240, Applied Biosystems) following the manafacturer's instructions.
- The sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-TC. These primers were used in respective PCR reactions with the following conditions: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 50° C. and 1 minute and 30 seconds at 72° C., followed by 7 minutes at 72° C. (TC001, TC014, TC015); 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 2 minutes and 30 seconds at 72° C., followed by 7 minutes at 72° C. (TC010); 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 53° C. and 1 minute at 72° C., followed by 7 minutes at 72° C. (TC002). The resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR8/GW/TOPO vector (Cat. No. K2500-20, Invitrogen), and sequenced. The sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-TC and are referred to as the partial sequences. The corresponding partial amino acid sequences are represented by the respective SEQ ID NOs as given in Table 3-TC.
- B. dsRNA Production of the Tribolium castaneum Genes
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 Ribomax™ Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- For each of the target genes, the sense T7 template was generated using specific T7 forward and specific reverse primers. The sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-TC. The conditions in the PCR reactions were as follows: 1 minute at 95° C., followed by 20 cycles of 30 seconds at 95° C., 30 seconds at 60° C. (−0.5° C./cycle) and 1 minute at 72° C., followed by 15 cycles of 30 seconds at 95° C., 30 seconds at 50° C. and 1 minute at 72° C., followed by 10 minutes at 72° C. The anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above. The sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-TC. The resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO4 precipitation. The generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions. The sense strand of the resulting dsRNA for each of the target genes is given in Table 8-TC.
- C. Recombination of Tribolium castaneum Genes into the Plant Vector pK7GWIWG2D(II)
- Since the mechanism of RNA interference operates through dsRNA fragments, the target nucleotide sequences of the target genes, as selected above, are cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct. These hairpin constructs are generated using the LR recombination reaction between an attL-containing entry clone (see Example 7A) and an attR-containing destination vector (=pK7GWIWG2D(II)). The plant vector pK7GWIWG2D(II) is obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement. LR recombination reaction is performed by using LR Clonase™ II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments result in a hairpin construct for each of the target genes, having the promoter-sense-intron-CmR-intron-antisense orientation, and wherein the promoter is the plant operable 35S promoter. The binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- Restriction enzyme digests were carried out on pCR8/GW/TOPO plasmids containing the different targets (see Example 7B). The band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) is purified. An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) is added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix is transformed into
Top 10 chemically competent cells. Positive clones are selected by restriction digest analyses. - D. Laboratory Trials to Test dsRNA Targets, Using Artificial Diet for Activity Against Tribolium castaneum Larvae
- The example provided below is an exemplification of the finding that the red flour beetle (RFB) larvae are susceptible to orally ingested dsRNA corresponding to own target genes.
- Red flour beetles, Tribolium castaneum, were maintained at Insect Investigations Ltd. (origin: Imperial College of Science, Technology and Medicine, Silwood Park, Berkshire, UK). Insects were cultured according to company SOP/251/01. Briefly, the beetles were housed in plastic jars or tanks. These have an open top to allow ventilation. A piece of netting was fitted over the top and secured with an elastic band to prevent escape. The larval rearing medium (flour) was placed in the container where the beetles can breed. The stored product beetle colonies were maintained in a controlled temperature room at 25±3° C. with a 16:8 hour light:dark cycle.
- Double-stranded RNA from target TC014 (with sequence corresponding to SEQ ID NO −799) was incorporated into a mixture of flour and milk powder (wholemeal flour: powdered milk in the ratio 4:1) and left to dry overnight. Each replicate was prepared separately: 100 μl of a 10 μg/μl dsRNA solution (1 mg dsRNA) was added to 0.1 g flour/milk mixture. The dried mixture was ground to a fine powder. Insects were maintained within Petri dishes (55 mm diameter), lined with a double layer of filter paper. The treated diet was placed between the two filter paper layers. Ten first instar, mixed sex larvae were placed in each dish (replicate). Four replicates were performed for each treatment. Control was Milli-Q water. Assessments (number of survivors) were made on a regular basis. During the trial, the test conditions were 25-33° C. and 20-25% relative humidity, with a 12:12 hour light:dark photoperiod.
- Survival of larvae of T. castaneum over time on artificial diet treated with target TC014 dsRNA was significantly reduced when compared to diet only control, as shown in
FIG. 1-TC . - A Cloning Myzus persicae partial sequences High quality, intact RNA was isolated from nymphs of Myzus persicae (green peach aphid; source: Dr. Rachel Down, Insect & Pathogen Interactions, Central Science Laboratory, Sand Hutton, York, YO41 1LZ, UK) using TRizol Reagent (Cat. No. 15596-026/15596-018, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions. Genomic DNA present in the RNA preparation was removed by DNase treatment following the manafacturer's instructions (Cat. No. 1700, Promega). cDNA was generated using a commercially available kit (SuperScript™ III Reverse Transcriptase, Cat. No. 18080044, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions.
- To isolate cDNA sequences comprising a portion of the MP001, MP002, MP010, MP016 and MP027 genes, a series of PCR reactions with degenerate primers were performed using Amplitaq Gold (Cat. No. N8080240, Applied Biosystems) following the manafacturer's instructions.
- The sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-MP. These primers were used in respective PCR reactions with the following conditions: for MP001, MP002 and MP016, 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 50° C. and 1
minute 30 seconds at 72° C., followed by 7 minutes at 72° C.; for MP027, a touchdown program was used: 10 minutes at 95° C., followed by 10 cycles of 30 seconds at 95° C., 40 seconds at 60° C. with a decrease in temperature of 1° C. per cycle and 1minute 10 seconds at 72° C., followed by 30 cycles of 30 seconds at 95° C., 40 seconds at 50° C. and 1minute 10 seconds at 72° C., followed by 7 minutes at 72° C.; for MP010, 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 3 minutes at 72° C., followed by 7 minutes at 72° C. The resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR8/GW/TOPO vector (Cat. No. K2500-20, Invitrogen), and sequenced. The sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-MP and are referred to as the partial sequences. The corresponding partial amino acid sequences are represented by the respective SEQ ID NOs as given in Table 3-MP. - B. dsRNA Production of Myzus persicae Genes
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 Ribomax™ Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- For each of the target genes, the sense T7 template was generated using specific T7 forward and specific reverse primers. The sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-MP. A touchdown PCR was performed as follows: 1 minute at 95° C., followed by 20 cycles of 30 seconds at 95° C., 30 seconds at 55° C. (for MP001, MP002, MP016, MP027 and gfp) or 30 seconds at 50° C. (for MP010) with a decrease in temperature of 0.5° C. per cycle and 1 minute at 72° C., followed by 15 cycles of 30 seconds at 95° C., 30 seconds at 45° C. and 1 minute at 72° C. followed by 10 minutes at 72° C. The anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above. The sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-MP. The resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO4 precipitation. The generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions. The sense strand of the resulting dsRNA for each of the target genes is given in Table 8-MP.
- C. Recombination of Myzus persicae Genes into the Plant Vector pK7GWIWG2D(II)
- Since the mechanism of RNA interference operates through dsRNA fragments, the target nucleotide sequences of the target genes, as selected above, were cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct. These hairpin constructs were generated using the LR recombination reaction between an attL-containing entry clone (see Example 8A) and an attR-containing destination vector (=pK7GWIWG2D(II)). The plant vector pK7GWIWG2D(II) was obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement. LR recombination reaction was performed by using LR Clonase™ II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments resulted in a hairpin construct for each of the MP001, MP002, MP010, MP016 and MP026 genes, having the promoter-sense-intron-CmR-intron-antisense orientation and wherein the promoter is the plant operable 35S promoter. The binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- A digest with restriction enzyme Alw441 was done for all the targets cloned into pCR8/GW/topo (see Example 8B). The band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) was purified. An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) was added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix was transformed into
Top 10 chemically competent cells. Positive clones were selected by restriction digest analysis. The complete sequence of the hairpin construct for: - MP001 (sense-intron-CmR-intron-antisense) is represented in SEQ ID NO 1066;
- MP002 (sense-intron-CmR-intron-antisense) is represented in SEQ ID NO 1067;
- MP010 (sense-intron-CmR-intron-antisense) is represented in SEQ ID NO 1068;
- MP016 (sense-intron-CmR-intron-antisense) is represented in SEQ ID NO 1069;
- MP027 (sense-intron-CmR-intron-antisense) is represented in SEQ ID NO 1070.
- Table 9-MP provides complete sequences for each hairpin construct.
- D. Laboratory Trials to Test dsRNA Targets Using Liquid Artificial Diet for Activity Against Myzus persicae
- Liquid artificial diet for the green peach aphid, Myzus persicae, was prepared based on the diet suitable for pea aphids (Acyrthosiphon pisum), as described by Febvay et al. (1988) [Influence of the amino acid balance on the improvement of an artificial diet for a biotype of Acyrthosiphon pisum (Homoptera: Aphididae). Can. J. Zool. 66: 2449-2453], but with some modifications. The amino acids component of the diet was prepared as follows: in mg/100 ml, alanine 178.71, beta-alanine 6.22, arginine 244.9, asparagine 298.55, aspartic acid 88.25, cysteine 29.59, glutamic acid 149.36, glutamine 445.61, glycine 166.56, histidine 136.02, isoleucine 164.75, leucine 231.56, lysine hydrochloride 351.09, methionine 72.35, ornithine (HCl) 9.41, phenylalanine 293, proline 129.33, serine 124.28, threonine 127.16, tryptophane 42.75, tyrosine 38.63, L-valine 190.85. The amino acids were dissolved in 30 ml Milli-Q H2O except for tyrosine which was first dissolved in a few drops of 1 M HCl before adding to the amino acid mix. The vitamin mix component of the diet was prepared as a 5× concentrate stock as follows: in mg/L, amino
benzoic acid 100, ascorbic acid 1000,biotin 1,calcium panthothenate 50, choline chloride 500,folic acid 10, myoinositol 420,nicotinic acid 100, pyridoxine hydrochloride 25,riboflavin 5, thiamine hydrochloride 25. The riboflavin was dissolved in 1 ml H2O at 50° C. and then added to the vitamin mix stock. The vitamin mix was aliquoted in 20 ml per aliquot and stored at −20° C. One aliquot of vitamin mix was added to the amino acid solution. Sucrose and MgSO4.7H2O was added with the following amounts to the mix: 20 g and 242 mg, respectively. Trace metal stock solution was prepared as follows: in mg/100 ml, CuSO4.5H2O 4.7, FeCl3.6H2O 44.5, MnCl2.4H2O 6.5, NaCl 25.4, ZnCl2 8.3. Ten ml of the trace metal solution and 250 mg KH2PO4 was added to the diet and Milli-Q water was added to a final liquid diet volume of 100 ml. The pH of the diet was adjusted to 7 with 1 M KOH solution. The liquid diet was filter-sterilised through an 0.22 μm filter disc (Millipore). - Green peach aphids (Myzus persicae; source: Dr. Rachel Down, Insect & Pathogen Interactions, Central Science Laboratory, Sand Hutton, York, YO41 1LZ, UK) were reared on 4- to 6-week-old oilseed rape (Brassica napus variety SW Oban; source: Nick Balaam, Sw Seed Ltd., 49 North Road, Abington, Cambridge, CB1 6AS, UK) in aluminium-framed cages containing 70 μm mesh in a controlled environment chamber with the following conditions: 23±2° C. and 60±5% relative humidity, with a 16:8 hours light:dark photoperiod.
- One day prior to the start of the bioassay, adults were collected from the rearing cages and placed on fresh detached oilseed rape leaves in a Petri dish and left overnight in the insect chamber. The following day, first-instar nymphs were picked and transferred to feeding chambers. A feeding chamber comprised of 10 first instar nymphs placed in a small Petri dish (with
diameter 3 cm) covered with a single layer of thinly stretched parafilm M onto which 50 μl of diet was added. - The chamber was sealed with a second layer of parafilm and incubated under the same conditions as the adult cultures. Diet with dsRNA was refreshed every other day and the insects' survival assessed on
day 8 i.e. 8th day post bioassay start. Per treatment, 5 bioassay feeding chambers (replicates) were set up simultaneously. Test and control (gfp) dsRNA solutions were incorporated into the diet to a final concentration of 2 μg/μl. The feeding chambers were kept at 23±2° C. and 60±5% relative humidity, with a 16:8 hours light:dark photoperiod. A Mann-Whitney test was determined byGraphPad Prism version 4 to establish whether the medians do differ significantly between target 27 (MP027) and gfp dsRNA. - In the bioassay, feeding liquid artificial diet supplemented with intact naked dsRNA from target 27 (SEQ ID NO 1061) to nymphs of Myzus persicae using a feeding chamber, resulted in a significant increase in mortality, as shown in
FIG. 1 . Average percentage survivors fortarget 27, gfp dsRNA and diet only treatment were 2, 34 and 82, respectively. Comparison of target 027 with gfp dsRNA groups using the Mann-Whitney test resulted in an one-tailed P-value of 0.004 which indicates that the median of target 027 is significantly different (P<0.05) from the expected larger median of gfp dsRNA. The green peach aphids on the liquid diet with incorporatedtarget 27 dsRNA were noticeably smaller than those that were fed on diet only or with gfp dsRNA control (data not presented). - E. Laboratory Trials of Myzus periscae (Green Peach Aphid) Infestation on Transgenic Arabidopsis thaliana Plants
- Arabidopsis thaliana plants were transformed using the floral dip method (Clough and Bent (1998) Plant Journal 16:735-743). Aerial parts of the plants were incubated for a few seconds in a solution containing 5% sucrose, resuspended Agrobacterium tumefaciens strain C58C1 Rif cells from an overnight culture and 0.03% of the surfactant Silwet L-77. After inoculation, plants were covered for 16 hours with a transparent plastic to maintain humidity. To increase the transformation efficiency, the procedure was repeated after one week. Watering was stopped as seeds matured and dry seeds were harvested and cold-treated for two days. After sterilization, seeds were plated on a kanamycin-containing growth medium for selection of transformed plants.
- The selected plants are transferred to soil for optimal T2 seed production.
- Transgenic Arabidopsis thaliana plants are selected by allowing the segregating T2 seeds to germinate on appropriate selection medium. When the roots of these transgenics are well-established they are then transferred to fresh artificial growth medium or soil and allowed to grow under optimal conditions. Whole transgenic plants are tested against nymphs of the green peach aphid (Myzus persicae) to show (1) a significant resistance to plant damage by the feeding nymph, (2) increased nymphal mortality, and/or (3) decreased weight of nymphal survivors (or any other aberrant insect development).
- A. Cloning Nilaparvata lugens Partial Sequences
- From high quality total RNA of Nilaparvata lugens (source: Dr. J. A. Gatehouse, Dept. Biological Sciences, Durham University, UK) cDNA was generated using a commercially available kit (SuperScript™ III Reverse Transcriptase, Cat No. 18080044, Invitrogen, Rockville, Md., USA) following the manufacturer's protocol.
- To isolate cDNA sequences comprising a portion of the Nilaparvata lugens NL001, NL002, NL003, NL004, NL005, NL006, NL007, NL008, NL009, NL010, NL011, NL012, NL013, NL014, NL015, NL016, NL018, NL019, NL021, NL022, and NL027 genes, a series of PCR reactions with degenerate primers were performed using Amplitaq Gold (Cat No. N8080240; Applied Biosystems) following the manufacturer's protocol.
- The sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-NL. These primers were used in respective PCR reactions with the following conditions: for NL001: 5 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.: for NL002: 3 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.; for NL003: 3 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 61° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.; for NL004: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 51° C. and 1 minute at 72° C.; for NL005: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.; for NL006: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 55° C. and 3 minute 30 seconds at 72° C., followed by 10 minutes at 72° C.; for NL007: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 1 minute 15 seconds at 72° C., followed by 10 minutes at 72° C.; for NL008 & NL014: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 53° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.; for NL009, NL011, NL012 & NL019: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.; for NL010: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 2 minute 30 seconds at 72° C., followed by 10 minutes at 72° C.; for NL013: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 1 minute 10 seconds at 72° C., followed by 10 minutes at 72° C.; for NL015 & NL016: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 1 minute 40 seconds at 72° C., followed by 10 minutes at 72° C.; for NL018: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 1 minute 35 seconds at 72° C., followed by 10 minutes at 72° C.; for NL021, NL022 & NL027: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 1 minute 45 seconds at 72° C., followed by 10 minutes at 72° C. The resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR8/GW/topo vector (Cat. No.
K2500 20, Invitrogen), and sequenced. The sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-NL and are referred to as the partial sequences. The corresponding partial amino acid sequences are represented by the respective SEQ ID NOs as given in Table 3-NL. - B. Cloning of a Partial Sequence of the Nilaparvata lugens NL023 Gene Via EST Sequence
- From high quality total RNA of Nilaparvata lugens (source: Dr. J. A. Gatehouse, Dept. Biological Sciences, Durham University, UK) cDNA was generated using a commercially available kit (SuperScript™ III Reverse Transcriptase, Cat No. 18080044, Invitrogen, Rockville, Md., USA) following the manufacturer's protocol.
- A partial cDNA sequence, NL023, was amplified from Nilaparvata lugens cDNA which corresponded to a Nilaparvata lugens EST sequence in the public database Genbank with accession number CAH65679.2. To isolate cDNA sequences comprising a portion of the NL023 gene, a series of PCR reactions with EST based specific primers were performed using PerfectShot™ ExTaq (Cat No. RR005A, Takara Bio Inc.) following the manafacturer's protocol.
- For NL023, the specific primers oGBKW002 and oGBKW003 (represented herein as SEQ ID NO 1157 and SEQ ID NO 1158, respectively) were used in two independent PCR reactions with the following conditions: 3 minutes at 95° C., followed by 30 cycles of 30 seconds at 95° C., 30 seconds at 56° C. and 2 minutes at 72° C., followed by 10 minutes at 72° C. The resulting PCR products were analyzed on agarose gel, purified (QIAquick® Gel Extraction Kit; Cat. No. 28706, Qiagen), cloned into the pCR4-TOPO vector (Cat No. K4575-40, Invitrogen) and sequenced. The consensus sequence resulting from the sequencing of both PCR products is herein represented by SEQ ID NO 1111 and is referred to as the partial sequence of the NL023 gene. The corresponding partial amino acid sequence is herein represented as SEQ ID NO 1112.
- C. dsRNA Production of Nilaparvata lugens Genes
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 Ribomax™ Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- For each of the target genes, the sense T7 template was generated using specific T7 forward and specific reverse primers. The sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-NL. The conditions in the PCR reactions were as follows: for NL001 & NL002: 4 minutes at 94° C., followed by 35 cycles of 30 seconds at 94° C., 30 seconds at 60° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.; for NL003: 4 minutes at 94° C., followed by 35 cycles of 30 seconds at 94° C., 30 seconds at 66° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.; for NL004, NL006, NL008, NL009, NL010 & NL019: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 54° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.; for NL005 & NL016: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 57° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.; for NL007 & NL014: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 51° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.; for NL011, NL012 & NL022: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 53° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.; for NL013, NL015, NL018 & NL021: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C.; for NL023 & NL027: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 52° C. and 1 minute at 72° C., followed by 10 minutes at 72° C. The anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above. The sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-NL. The resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen). The generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions, but with the following modification: RNA peppet is washed twice in 70% ethanol. The sense strand of the resulting dsRNA for each of the target genes is given in Table 8-NL.
- The template DNA used for the PCR reactions with T7 primers on the green fluorescent protein (gfp) control was the plasmid pPD96.12 (the Fire Lab, http://genome-www.stanford.edu/group/fire/), which contains the wild-type gfp coding sequence interspersed by 3 synthetic introns. Double-stranded RNA was synthesized using the commercially available kit T7 RiboMAX™ Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter. For gfp, the sense T7 template was generated using the specific T7 FW primer oGAU183 and the specific RV primer oGAU182 (represented herein as SEQ ID NO 236 and SEQ ID NO 237, respectively) in a PCR reaction with the following conditions: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C. The anti-sense T7 template was generated using the specific FW primer oGAU181 and the specific T7 RV primer oGAU184 (represented herein as SEQ ID NO 238 and SEQ ID NO 239, respectively) in a PCR reaction with the same conditions as described above. The resulting PCR products were analyzed on agarose gel and purified (QIAquick® PCR Purification Kit; Cat. No. 28106, Qiagen). The generated T7 FW and RV templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by precipitation with sodium acetate and isopropanol, following the manufacturer's protocol, but with the following modification: RNA peppet is washed twice in 70% ethanol. The sense strands of the resulting dsRNA is herein represented by SEQ ID NO 235.
- D. Laboratory Trials to Screen dsRNA Targets Using Liquid Artificial Diet for Activity Against Nilaparvata lugens
- Liquid artificial diet (MMD-1) for the rice brown planthopper, Nilaparvata lugens, was prepared as described by Koyama (1988) [Artificial rearing and nutritional physiology of the planthoppers and leafhoppers (Homoptera: Delphacidae and Deltocephalidae) on a holidic diet. JARQ 22: 20-27], but with a modification in final concentration of diet component sucrose: 14.4% (weight over volume) was used. Diet components were prepared as separate concentrates: 10× mineral stock (stored at 4° C.), 2× amino acid stock (stored at −20° C.) and 10× vitamin stock (stored at −20° C.). The stock components were mixed immediately prior to the start of a bioassay to 4/3× concentration to allow dilution with the test dsRNA solution (4× concentration), pH adjusted to 6.5, and filter-sterilised into approximately 500 μl aliquots.
- Rice brown planthopper (Nilaparvata lugens) was reared on two-to-three month old rice (Oryza saliva cv Taichung Native 1) plants in a controlled environment chamber: 27±2° C., 80% relative humidity, with a 16:8 hours light:dark photoperiod. A feeding chamber comprised 10 first or second instar nymphs placed in a small petri dish (with
diameter 3 cm) covered with a single layer of thinly stretched parafilm M onto which 50 μl of diet was added. The chamber was sealed with a second layer of parafilm and incubated under the same conditions as the adult cultures but with no direct light exposure. Diet with dsRNA was refreshed every other day and the insects' survival assessed daily. Per treatment, 5 bioassay feeding chambers (replicates) were set up simultaneously. Test and control (gfp) dsRNA solutions were incorporated into the diet to a final concentration of 2 mg/ml. The feeding chambers were kept at 27±2° C., 80% relative humidity, with a 16:8 hours light:dark photoperiod. Insect survival data were analysed using the Kaplan-Meier survival curve model and the survival between groups were compared using the logrank test (Prism version 4.0). - Feeding liquid artificial diet supplemented with intact naked dsRNAs to Nilaparvata lugens in vitro using a feeding chamber resulted in significant increases in nymphal mortalities as shown in four separate bioassays (
FIGS. 1( a)-(d)-NL; Tables 10-NL(a)-d)) (Durham University). These results demonstrate that dsRNAs corresponding to different essential BPH genes showed significant toxicity towards the rice brown planthopper. - Effect of gfp dsRNA on BPH survival in these bioassays is not significantly different to survival on diet only
- Tables 10-NL(a)-d) show a summary of the survival of Nilaparvata lugens on artificial diet supplemented with 2 mg/ml (final concentration) of the following targets; in Table 10-NL(a): NL002, NL003, NL005, NL010; in Table 10-NL(b): NL009, NL016; in Table 10-NL(c): NL014, NL018; and in Table 10-NL(d): NL013, NL015, NL021. In the survival analysis column, the effect of RNAi is indicated as follows: +=significantly decreased survival compared to gfp dsRNA control (alpha<0.05); -=no significant difference in survival compared to gfp dsRNA control. Survival curves were compared (between diet only and diet supplemented with test dsRNA, gfp dsRNA and test dsRNA, and diet only and gfp dsRNA) using the logrank test.
- E. Laboratory Trials to Screen dsRNAs at Different Concentrations Using Artificial Diet for Activity Against Nilaparvata lugens
- Fifty μl of liquid artificial diet supplemented with different concentrations of target NL002 dsRNA, namely 1, 0.2, 0.08, and 0.04 mg/ml (final concentration), was applied to the brown planthopper feeding chambers. Diet with dsRNA was refreshed every other day and the insects' survival assessed daily. Per treatment, 5 bioassay feeding chambers (replicates) were set up simultaneously. The feeding chambers were kept at 27±2° C., 80% relative humidity, with a 16:8 hours light:dark photoperiod. Insect survival data were analysed using the Kaplan-Meier survival curve model and the survival between groups were compared using the logrank test (Prism version 4.0).
- Feeding liquid artificial diet supplemented with intact naked dsRNAs of target NL002 at different concentrations resulted in significantly higher BPH mortalities at final concentrations of as low as 0.04 mg dsRNA per ml diet when compared with survival on diet only, as shown in
FIG. 2-NL and Table 11-NL. Table 11-NL summarizes the survival of Nilaparvata lugens artificial diet feeding trial supplemented with 1, 0.2, 0.08, & 0.04 mg/ml (final concentration) of target NL002. In the survival analysis column the effect of RNAi is indicated as follows: +=significantly decreases survival compared to diet only control (alpha<0.05); −=no significant differences in survival compared to diet only control. Survival curves were compared using the logrank test. - A. Cloning of Partial Sequence of the Chilo suppressalis Genes Via Family PCR
- High quality, intact RNA was isolated from the 4 different larval stages of Chilo suppressalis (rice striped stem borer) using TRIzol Reagent (Cat. No. 15596-026/15596-018, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions. Genomic DNA present in the RNA preparation was removed by DNase treatment following the manafacturer's instructions (Cat. No. 1700, Promega). cDNA was generated using a commercially available kit (SuperScript™ II Reverse Transcriptase, Cat. No. 18080044, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions.
- To isolate cDNA sequences comprising a portion of the CS001, CS002, CS003, CS006, CS007, CS009, CS011, CS013, CS014, CS015, CS016 and CS018 genes, a series of PCR reactions with degenerate primers were performed using Amplitaq Gold (Cat. No. N8080240, Applied Biosystems) following the manafacturer's instructions.
- The sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-CS. These primers were used in respective PCR reactions with the following conditions: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C. The resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR4/TOPO vector (Cat. No. K2500-20, Invitrogen), and sequenced. The sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-CS and are referred to as the partial sequences. The corresponding partial amino acid sequences are represented by the respective SEQ ID NOs as given in Table 3-CS.
- B. dsRNA Production of the Chilo suppressalis Genes
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 Ribomax™ Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- For each of the target genes, the sense T7 template was generated using specific T7 forward and specific reverse primers. The sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-CS. The conditions in the PCR reactions were as follows: 4 minutes at 95° C., followed by 35 cycles of 30 seconds at 95° C., 30 seconds at 55° C. and 1 minute at 72° C., followed by 10 minutes at 72° C. The anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above. The sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-CS. The resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO4 precipitation. The generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions. The sense strand of the resulting dsRNA for each of the target genes is given in Table 8-CS.
- C. Recombination of the Chilo suppressalis Genes into the Plant Vector pK7GWIWG2D(II)
- Since the mechanism of RNA interference operates through dsRNA fragments, the target nucleotide sequences of the target genes, as selected above, are cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct. These hairpin constructs are generated using the LR recombination reaction between an attL-containing entry clone (see Example 10A) and an attR-containing destination vector (=pK7GWIWG2D(II)). The plant vector pK7GWIWG2D(II) is obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement. LR recombination reaction is performed by using LR Clonase™ II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments result in a hairpin construct for each of the target genes, having the promoter-sense-intron-CmR-intron-antisense orientation, and wherein the promoter is the plant operable 35S promoter. The binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- Restriction enzyme digests were carried out on pCR8/GW/TOPO plasmids containing the different targets (see Example 10B). The band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) is purified. An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) is added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix is transformed into
Top 10 chemically competent cells. Positive clones are selected by restriction digest analyses. - D. Laboratory Trials to Test dsRNA Targets, Using Artificial Diet for Activity Against Chilo suppressalis Larvae
- Rice striped stem borers, Chilo suppressalis, (origin: Syngenta, Stein, Switzerland) were maintained on a modified artificial diet based on that described by Kamano and Sato, 1985 (in: Handbook of Insect Rearing. Volumes I & II. P Singh and R F Moore, eds., Elsevier Science Publishers, Amsterdam and New York, 1985, pp 448). Briefly, a litre diet was made up as follows: 20 g of agar added to 980 ml of Milli-Q water and autoclaved; the agar solution was cooled down to approximately 55° C. and the remaining ingredients were added and mixed thoroughly: 40 g corn flour (Polenta), 20 g cellulose, 30 g sucrose, 30 g casein, 20 g wheat germ (toasted), 8 g Wesson salt mixture, 12 g Vanderzant vitamin mix, 1.8 g sorbic acid, 1.6 g nipagin (methylparaben), 0.3 g aureomycin, 0.4 g cholesterol and 0.6 g L-cysteine. The diet was cooled down to approx. 45° C. and poured into rearing trays or cups. The diet was left to set in a horizontal laminair flow cabin. Rice leaf sections with oviposited eggs were removed from a cage housing adult moths and pinned to the solid diet in the rearing cup or tray. Eggs were left to hatch and neonate larvae were available for bioassays and the maintenance of the insect cultures. During the trials and rearings, the conditions were 28±2° C. and 80±5% relative humidity, with a 16:8 hour light:dark photoperiod.
- The same artificial diet is used for the bioassays but in this case the diet is poured equally in 24 multiwell plates, with each well containing 1 ml diet. Once the diet is set, the test formulations are applied to the diet's surface (2 cm2), at the rate of 50 μl of 1 μg/μl dsRNA of target. The dsRNA solutions are left to dry and two first instar moth larvae are placed in each well. After 7 days, the larvae are transferred to fresh treated diet in multiwell plates. At day 14 (i.e. 14 days post bioassay start) the number of live and dead insects is recorded and examined for abnormalities. Twenty-four larvae in total are tested per treatment.
- An alternative bioassay is performed in which treated rice leaves are fed to neonate larvae of the rice striped stem borer. Small leaf sections of Indica rice
variety Taichung native 1 are dipped in 0.05% Triton X-100 solution containing 1 μg/μl of target dsRNA, left to dry and each section placed in a well of a 24 multiwell plate containing gellified 2% agar. Two neonates are transferred from the rearing tray to each dsRNA treated leaf section (24 larvae per treatment). After 4 and 8 days, the larvae are transferred to fresh treated rice leaf sections. The number of live and dead larvae are assessed ondays - A. Cloning of a Partial Sequence of the Plutella xylostella
- High quality, intact RNA was isolated from all the different larval stages of Plutella xylostella (Diamondback moth; source: Dr. Lara Senior, Insect Investigations Ltd., Capital Business Park, Wentloog, Cardiff, CF3 2PX, Wales, UK) using TRIzol Reagent (Cat. No. 15596-026/15596-018, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions. Genomic DNA present in the RNA preparation was removed by DNase treatment following the manufacturer's instructions (Cat. No. 1700, Promega). cDNA was generated using a commercially available kit (SuperScript™ III Reverse Transcriptase, Cat. No. 18080044, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions.
- To isolate cDNA sequences comprising a portion of the PX001, PX009, PX010, PX015, PX016 genes, a series of PCR reactions with degenerate primers were performed using Amplitaq Gold (Cat. No. N8080240, Applied Biosystems) following the manufacturer's instructions.
- The sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-PX. These primers were used in respective PCR reactions with the following conditions: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 50° C. and 1 minute and 30 seconds at 72° C., followed by 7 minutes at 72° C. (for PX001, PX009, PX015, PX016); 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 54° C. and 2 minute and 30 seconds at 72° C., followed by 7 minutes at 72° C. (for PX010). The resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR8/GW/TOPO vector (Cat. No. K2500-20, Invitrogen) and sequenced. The sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-PX and are referred to as the partial sequences. The corresponding partial amino acid sequence are represented by the respective SEQ ID NOs as given in Table 3-PX.
- B. dsRNA Production of the Plutella xylostella Genes
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 Ribomax™ Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- For each of the target genes, the sense T7 template was generated using specific T7 forward and specific reverse primers. The sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-PX. The conditions in the PCR reactions were as follows: 1 minute at 95° C., followed by 20 cycles of 30 seconds at 95° C., 30 seconds at 60° C. (−0.5° C./cycle) and 1 minute at 72° C., followed by 15 cycles of 30 seconds at 95° C., 30 seconds at 50° C. and 1 minute at 72° C., followed by 10 minutes at 72° C. The anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above. The sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-PX. The resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO4 precipitation. The generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions. The sense strand of the resulting dsRNA for each of the target genes is given in Table 8-PX.
- C. Recombination of the Plutella xylostella Genes into the Plant Vector pK7GWIWG2D(II)
- Since the mechanism of RNA interference operates through dsRNA fragments, the target nucleotide sequences of the target genes, as selected above, are cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct. These hairpin constructs are generated using the LR recombination reaction between an attL-containing entry clone (see Example 11A) and an attR-containing destination vector (=pK7GWIWG2D(II)). The plant vector pK7GWIWG2D(II) is obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement. LR recombination reaction is performed by using LR Clonase™ II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments result in a hairpin construct for each of the target genes, having the promoter-sense-intron-CmR-intron-antisense orientation, and wherein the promoter is the plant operable 35S promoter. The binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- Restriction enzyme digests were carried out on pCR8/GW/TOPO plasmids containing the different targets (see Example 11B). The band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) is purified. An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) is added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix is transformed into
Top 10 chemically competent cells. Positive clones are selected by restriction digest analyses. - D. Laboratory Trials to Test dsRNA Targets, Using Artificial Diet for Activity Against Plutella xylostella Larvae
- Diamond-back moths, Plutella xylostella, were maintained at Insect Investigations Ltd. (origin: Newcastle University, Newcastle-upon-Tyne, UK). The insects were reared on cabbage leaves. First instar, mixed sex larvae (approximately 1 day old) were selected for use in the trial. Insects were maintained in Eppendorf tubes (1.5 ml capacity). Commercially available Diamond-back moth diet (Bio-Serv, NJ, USA), prepared following the manafacturer's instructions, was placed in the lid of each tube (0.25 ml capacity, 8 mm diameter). While still liquid, the diet was smoother over to remove excess and produce an even surface.
- Once the diet has set the test formulations are applied to the diet's surface, at the rate of 25 μl undiluted formulation (1 μg/μl dsRNA of targets) per replicate. The test formulations are allowed to dry and one first instar moth larva is placed in each tube. The larva is placed on the surface of the diet in the lid and the tube carefully closed. The tubes are stored upside down, on their lids such that each larva remains on the surface of the diet. Twice weekly the larvae are transferred to new Eppendorf tubes with fresh diet. The insects are provided with treated diet for the first two weeks of the trial and thereafter with untreated diet.
- Assessments are made twice weekly for a total of 38 days at which point all larvae are dead. At each assessment the insects are assessed as live or dead and examined for abnormalities. Forty single larva replicates are performed for each of the treatments. During the trial the test conditions are 23 to 26° C. and 50 to 65% relative humidity, with a 16:8 hour light:dark photoperiod.
- A. Cloning Acheta domesticus Partial Sequences
- High quality, intact RNA was isolated from all the different insect stages of Acheta domesticus (house cricket; source: Dr. Lara Senior, Insect Investigations Ltd., Capital Business Park, Wentloog, Cardiff, CF3 2PX, Wales, UK) using TRIzol Reagent (Cat. No. 15596-026/15596-018, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions. Genomic DNA present in the RNA preparation was removed by DNase treatment following the manafacturer's instructions (Cat. No. 1700, Promega). cDNA was generated using a commercially available kit (SuperScript™ III Reverse Transcriptase, Cat. No. 18080044, Invitrogen, Rockville, Md., USA) following the manufacturer's instructions.
- To isolate cDNA sequences comprising a portion of the AD001, AD002, AD009, AD015 and AD016 genes, a series of PCR reactions with degenerate primers were performed using Amplitaq Gold (Cat. No. N8080240, Applied Biosystems) following the manafacturer's instructions.
- The sequences of the degenerate primers used for amplification of each of the genes are given in Table 2-AD. These primers were used in respective PCR reactions with the following conditions: 10 minutes at 95° C., followed by 40 cycles of 30 seconds at 95° C., 1 minute at 50° C. and 1 minute and 30 seconds at 72° C., followed by 7 minutes at 72° C. The resulting PCR fragments were analyzed on agarose gel, purified (QIAquick Gel Extraction kit, Cat. No. 28706, Qiagen), cloned into the pCR8/GW/topo vector (Cat. No.
K2500 20, Invitrogen) and sequenced. The sequences of the resulting PCR products are represented by the respective SEQ ID NOs as given in Table 2-AD and are referred to as the partial sequences. The corresponding partial amino acid sequence are represented by the respective SEQ ID NOs as given in Table 3-AD. - B. dsRNA Production of the Acheta domesticus Genes
- dsRNA was synthesized in milligram amounts using the commercially available kit T7 Ribomax™ Express RNAi System (Cat. No. P1700, Promega). First two separate single 5′ T7 RNA polymerase promoter templates were generated in two separate PCR reactions, each reaction containing the target sequence in a different orientation relative to the T7 promoter.
- For each of the target genes, the sense T7 template was generated using specific T7 forward and specific reverse primers. The sequences of the respective primers for amplifying the sense template for each of the target genes are given in Table 8-AD. The conditions in the PCR reactions were as follows: 1 minute at 95° C., followed by 20 cycles of 30 seconds at 95° C., 30 seconds at 60° C. (−0.5° C./cycle) and 1 minute at 72° C., followed by 15 cycles of 30 seconds at 95° C., 30 seconds at 50° C. and 1 minute at 72° C., followed by 10 minutes at 72° C. The anti-sense T7 template was generated using specific forward and specific T7 reverse primers in a PCR reaction with the same conditions as described above. The sequences of the respective primers for amplifying the anti-sense template for each of the target genes are given in Table 8-AD. The resulting PCR products were analyzed on agarose gel and purified by PCR purification kit (Qiaquick PCR Purification Kit, Cat. No. 28106, Qiagen) and NaClO4 precipitation. The generated T7 forward and reverse templates were mixed to be transcribed and the resulting RNA strands were annealed, DNase and RNase treated, and purified by sodium acetate, following the manufacturer's instructions. The sense strand of the resulting dsRNA for each of the target genes is given in Table 8-AD.
- C. Recombination of the Acheta domesticus Genes into the Plant Vector pK7GWIWG2D(II)
- Since the mechanism of RNA interference operates through dsRNA fragments, the target nucleotide sequences of the target genes, as selected above, are cloned in anti-sense and sense orientation, separated by the intron-CmR-intron, whereby CmR is the chloramphenicol resistance marker, to form a dsRNA hairpin construct. These hairpin constructs are generated using the LR recombination reaction between an attL-containing entry clone (see Example 12A) and an attR-containing destination vector (=pK7GWIWG2D(II)). The plant vector pK7GWIWG2D(II) is obtained from the VIB/Plant Systems Biology with a Material Transfer Agreement. LR recombination reaction is performed by using LR Clonase™ II enzyme mix (Cat. No. 11791-020, Invitrogen) following the manufacturer's instructions. These cloning experiments result in a hairpin construct for each of the target genes, having the promoter-sense-intron-CmR-intron-antisense orientation, and wherein the promoter is the plant operable 35S promoter. The binary vector pK7GWIWG2D(II) with the 35S promoter is suitable for transformation into A. tumefaciens.
- Restriction enzyme digests were carried out on pCR8/GW/TOPO plasmids containing the different targets (see Example 12B). The band containing the gene of interest flanked by the attL sites using Qiaquick Gel Extraction Kit (Cat. No. 28706, Qiagen) is purified. An amount of 150 ng of purified fragment and 150 ng pK7GWIWG2D(II) is added together with the LR clonase II enzyme and incubated for at least 1 h at 25° C. After proteinase K solution treatment (10 min at 37° C.), the whole recombination mix is transformed into
Top 10 chemically competent cells. Positive clones are selected by restriction digest analyses. - D. Laboratory Trials to Test dsRNA Targets, Using Artificial Diet for Activity Against Acheta domesticus Larvae
- House crickets, Acheta domesticus, were maintained at Insect Investigations Ltd. (origin: Blades Biological Ltd., Kent, UK). The insects were reared on bran pellets and cabbage leaves. Mixed sex nymphs of equal size and no more than 5 days old were selected for use in the trial. Double-stranded RNA is mixed with a wheat-based pelleted rodent diet (rat and mouse standard diet, B & K Universal Ltd., Grimston, Aldbrough, Hull, UK). The diet, BK001P, contains the following ingredients in descending order by weight: wheat, soya, wheatfeed, barley, pellet binder,
rodent 5 vit min, fat blend, dicalcium phosphate, mould carb. The pelleted rodent diet is finely ground and heat-treated in a microwave oven prior to mixing, in order to inactivate any enzyme components. All rodent diet is taken from the same batch in order to ensure consistency. The ground diet and dsRNA are mixed thoroughly and formed into small pellets of equal weight, which are allowed to dry overnight at room temperature. - Double-stranded RNA samples from targets and gfp control at
concentrations 10 μg/μl were applied in the ratio 1 g ground diet plus 1 ml dsRNA solution, thereby resulting in an application rate of 10 mg dsRNA per g pellet. Pellets are replaced weekly. The insects are provided with treated pellets for the first three weeks of the trial. Thereafter untreated pellets are provided. Insects are maintained within lidded plastic containers (9 cm diameter, 4.5 cm deep), ten per container. Each arena contains one treated bait pellet and one water source (damp cotton wool ball), each placed in a separate small weigh boat. The water is replenished ad lib throughout the experiment. - Assessments are made at twice weekly intervals, with no more than four days between assessments, until all the control insects had either died or moulted to the adult stage (84 days). At each assessment the insects are assessed as live or dead, and examined for abnormalities. From day 46 onwards, once moulting to adult has commenced, all insects (live and dead) are assessed as nymph or adult. Surviving insects are weighed on day 55 of the trial. Four replicates are performed for each of the treatments. During the trial the test conditions are 25 to 33° C. and 20 to 25% relative humidity, with a 12:12 hour light:dark photoperiod.
-
TABLE 1A C. elegans id D. melanogaster id description devgen RNAi screen B0250.1 CG1263 large ribosomal subunit L8 protein. Acute lethal or lethal B0336.10 CG3661 large ribosomal subunit L23 protein. Acute lethal or lethal B0336.2 CG8385 ADP-ribosylation factor Acute lethal or lethal B0464.1 CG3821 Putative aspartyl(D) tRNA synthetase. Acute lethal or lethal C01G8.5 CG10701 Ortholog of the ERM family of cytoskeletal linkers Acute lethal or lethal C01H6.5 CG33183 Nuclear hormone receptor that is required in all larval molts Acute lethal or lethal C02C6.1 CG18102 Member of the DYNamin related gene class Acute lethal or lethal C03D6.8 CG6764 Large ribosomal subunit L24 protein (Rlp24p) Acute lethal or lethal C04F12.4 CG6253 rpl-14 encodes a large ribosomal subunit L14 protein. Acute lethal or lethal C04H5.6 CG10689 Product with RNA helicase activity (EC:2.7.7.-) involved in nuclear Embryonic lethal or sterile mRNA splicing, via spliceosome which is a component of the spliceosome complex C13B9.3 CG14813 Delta subunit of the coatomer (COPI) complex Acute lethal or lethal C17H12.14 CG1088 Member of the Vacuolar H ATPase gene class Acute lethal or lethal C26E6.4 CG3180 DNA-directed RNA polymerase II Acute lethal or lethal F23F12.6 CG16916 Triple A ATPase subunit of the 26S proteasome's 19S regulatory particle Acute lethal or lethal (RP) base subcomplex F57B9.10 CG10149 Member of the proteasome Regulatory Particle, Non-ATPase-like gene Acute lethal or lethal class K11D9.2 CG3725 sarco-endoplasmic reticulum Ca[2+] ATPase homolog Embryonic lethal or sterile T20G5.1 CG9012 Clathrin heavy chain Acute lethal or lethal T20H4.3 CG5394 Predicted cytoplasmic prolyl-tRNA synthetase (ProRS) Acute lethal or lethal T21E12.4 CG7507 Cytoplasmic dynein heavy chain homolog Acute lethal or lethal C05C10.3 CG1140 Orthologue to the human gene 3-OXOACID COA TRANSFERASE Acute lethal or lethal C09D4.5 CG2746 Ribosomal protein L19, structural constituent of ribosome involved in Acute lethal or lethal protein biosynthesis which is localised to the ribosome C09E10.2 CG31140 Orthologue of diacylglyerol kinase involved in movement, egg laying, and Acute lethal or lethal synaptic transmission, and is expressed in neurons. C13B9.3 CG14813 Delta subunit of the coatomer (COPI) Acute lethal or lethal C14B9.7 CG12775 Large ribosomal subunit L21 protein (RPL-21) involved in protein Acute lethal or lethal biosynthesis C15H11.7 CG30382 Type 6 alpha subunit of the 26S proteasome's 20S protease core particle Acute lethal or lethal (CP) C17E4.9 CG9261 Protein involved with Na+/K+− exchanging ATPase complex Embryonic lethal or sterile C17H12.14 CG1088 V-ATPase E subunit Acute lethal or lethal C23G10.4 CG11888 Non-ATPase subunit of the 26S proteasome's 19S regulatory paritcle Acute lethal or lethal base subcomplex (RPN-2) C26D10.2 CG7269 Product with helicase activity involved in nuclear mRNA splicing, via Acute lethal or lethal spliceosome which is localized to the nucleus C26E6.4 CG3180 RNA polymerase II 140 kD subunit (RpII140), DNA-directed RNA Acute lethal or lethal polymerase activity (EC:2.7.7.6) involved in transcription from Pol II promoter which is a component of the DNA-directed RNA polymerase II, core complex C26F1.4 CG15697 Product with function in protein biosynthesis and ubiquitin in protein Acute lethal or lethal degradation. C30C11.1 CG12220 Unknown function Acute lethal or lethal C30C11.2 CG10484 Member of the proteasome Regulatory Particle, Non-ATPase-like gene Acute lethal or lethal class C36A4.2 CG13977 cytochrome P450 Acute lethal or lethal C37C3.6 CG33103 Orthologous to thrombospondin, papilin and lacunin Acute lethal or lethal C37H5.8 CG8542 Member of the Heat Shock Protein gene class Acute lethal or lethal C39F7.4 CG3320 Rab- protein 1 involved in cell adhesionAcute lethal or lethal C41C4.8 CG2331 Transitional endoplasmic reticulum ATPase TER94, Golgi organization Growth delay or arrested in and biogenesis growth C42D8.5 CG8827 ACE-like protein Acute lethal or lethal C47E12.5 CG1782 Ubiquitin-activating enzyme, function in an ATP-dependent reaction that Acute lethal or lethal activates ubiquitin prior to its conjugation to proteins that will subsequently be degraded by the 26S proteasome. C47E8.5 CG1242 Member of the abnormal DAuer Formation gene class Acute lethal or lethal C49H3.11 CG5920 Small ribosomal subunit S2 protein. Acute lethal or lethal C52E4.4 CG1341 Member of the proteasome Regulatory Particle, ATPase-like gene class Acute lethal or lethal C56C10.3 CG8055 Carrier protein with putatively involved in intracellular protein transport Growth delay or arrested in growth CD4.6 CG4904 Type 1 alpha subunit of the 26S proteasome's 20S protease core particle Acute lethal or lethal (CP). D1007.12 CG9282 Large ribosomal subunit L24 protein. Acute lethal or lethal D1054.2 CG5266 Member of the Proteasome Alpha Subunit gene class Acute lethal or lethal D1081.8 CG6905 MYB transforming protein Acute lethal or lethal F07D10.1 CG7726 Large ribosomal subunit L11 protein (RPL-11.2) involved in protein Acute lethal or lethal biosynthesis. F11C3.3 CG17927 Muscle myosin heavy chain (MHC B) Acute lethal or lethal F13B10.2 CG4863 Large ribosomal subunit L3 protein (rpl-3) Acute lethal or lethal F16A11.2 CG9987 Methanococcus hypothetical protein 0682 like Acute lethal or lethal F20B6.2 CG17369 V-ATPase B subunit Growth delay or arrested in growth F23F12.6 CG16916 Triple A ATPase subunit of the 26S proteasome's 19S regulatory particle Acute lethal or lethal (RP) base subcomplex (RPT-3) F25H5.4 CG2238 Translation elongation factor 2 (EF-2), a GTP-binding protein involved in Growth delay or arrested in protein synthesis growth F26D10.3 CG4264 Member of the Heat Shock Protein gene class Acute lethal or lethal F28C6.7 CG6846 Large ribosomal subunit L26 protein (RPL-26) involved in protein Embryonic lethal or sterile biosynthesis F28D1.7 CG8415 Small ribosomal subunit S23 protein (RPS-23) involved in protein Acute lethal or lethal biosynthesis F29G9.5 CG5289 Member of the proteasome Regulatory Particle, ATPase-like gene class Acute lethal or lethal F32H2.5 CG3523 Mitochondrial protein Acute lethal or lethal F37C12.11 CG2986 Small ribosomal subunit S21 protein (RPS-21) involved in protein Acute lethal or lethal biosynthesis F37C12.4 CG7622 Large ribosomal subunit L36 protein (RPL-36) involved in protein Acute lethal or lethal biosynthesis F37C12.9 CG1527 Small ribosomal subunit S14 protein (RPS-14) involved in protein Acute lethal or lethal biosynthesis F38E11.5 CG6699 beta′ (beta-prime) subunit of the coatomer (COPI) complex Acute lethal or lethal F39B2.6 CG10305 Small ribosomal subunit S26 protein (RPS-26) involved in protein Acute lethal or lethal biosynthesis F39H11.5 CG12000 Member of the Proteasome Beta Subunit gene class Acute lethal or lethal F40F8.10 CG3395 Ribosomal protein S9 (RpS9), structural constituent of ribosome involved Acute lethal or lethal in protein biosynthesis which is a component of the cytosolic small ribosomal subunit F42C5.8 CG7808 Small ribosomal subunit S8 protein (RPS-8) involved in protein Acute lethal or lethal biosynthesis F49C12.8 CG5378 Member of the proteasome Regulatory Particle, Non-ATPase-like gene Acute lethal or lethal class F53A3.3 CG2033 Small ribosomal subunit S15a protein. Acute lethal or lethal F53G12.10 CG4897 large ribosomal subunit L7 protein (rpl-7) Acute lethal or lethal F54A3.3 CG8977 Unknown function Acute lethal or lethal F54E2.3 CG1915 Product with sallimus (sls), myosin-light-chain kinase activity (EC:2.7.1.117) involved in mitotic chromosome condensation which is localized to the nucleus F54E7.2 CG11271 Small ribosomal subunit S12 protein (RPS-12) involved in protein Acute lethal or lethal biosynthesis F55A11.2 CG4214 Member of the SYNtaxin gene class Acute lethal or lethal F55A3.3 CG1828 transcritpion factor Acute lethal or lethal F55C10.1 CG11217 Ortholog of calcineurin B, the regulatory subunit of the protein Acute lethal or lethal phosphatase 2B F56F3.5 CG2168 rps-1 encodes a small ribosomal subunit S3A protein. Acute lethal or lethal F57B9.10 CG10149 Member of the proteasome Regulatory Particle, Non-ATPase-like gene Acute lethal or lethal class F58F12.1 CG2968 ATP synthase Acute lethal or lethal F59E10.3 CG3948 Zeta subunit of the coatomer (COPI) complex Acute lethal or lethal JC8.3 CG3195 Large ribosomal subunit L12 protein (rpl-12) Acute lethal or lethal K01G5.4 CG1404 Putative RAN small monomeric GTPase (cell adhesion) Acute lethal or lethal K04F10.4 CG18734 Subtilase Acute lethal or lethal K05C4.1 CG12323 Member of the Proteasome Beta Subunit gene class Acute lethal or lethal K07D4.3 CG18174 Putative proteasome regulatory particle, lid subcomplex, rpn11 Acute lethal or lethal K11D9.2 CG3725 Sarco-endoplasmic reticulum Ca[2+] ATPase Embryonic lethal or sterile; Acute lethal or lethal M03F4.2 CG4027 An actin that is expressed in body wall and vulval muscles and the Acute lethal or lethal spermatheca. R06A4.9 CG1109 six WD40 repeats Acute lethal or lethal R10E11.1 CG15319 Putative transcriptional cofactor Acute lethal or lethal R12E2.3 CG3416 Protein with endopeptidase activity involved in proteolysis and Acute lethal or lethal peptidolysis F10C1.2 CG10119 Member of the Intermediate Filament, B gene class Embryonic lethal or sterile F35G12.8 CG11397 Homolog of the SMC4 subunit of mitotic condensin Embryonic lethal or sterile F53G12.1 CG5771 GTPase homologue Embryonic lethal or sterile F54E7.3 CG5055 PDZ domain-containing protein Embryonic lethal or sterile H28O16.1 CG3612 ATP synthase Growth delay or arrested in growth K12C11.2 CG4494 Member of the SUMO (ubiquitin-related) homolog gene class Embryonic lethal or sterile R12E2.3 CG3416 Member of the proteasome Regulatory Particle, Non-ATPase-like gene Acute lethal or lethal class R13A5.8 CG6141 Ribosomal protein L9, structural constituent of ribosome involved in Acute lethal or lethal protein biosynthesis which is localised to the ribosome T01C3.6 CG4046 rps-16 encodes a small ribosomal subunit S16 protein. Acute lethal or lethal T01H3.1 CG7007 proteolipid protein PPA1 like protein Acute lethal or lethal T05C12.7 CG5374 Cytosolic chaperonin Acute lethal or lethal T05H4.6 CG5605 eukaryotic peptide chain release factor subunit 1Acute lethal or lethal T10H9.4 CG17248 N-synaptobrevin; v-SNARE, vesicle-mediated transport, synaptic vesicle T14F9.1 CG17332 ATPase subunit Growth delay or arrested in growth T20G5.1 CG9012 Clathrin heavy chain Acute lethal or lethal T21B10.7 CG7033 t- complex protein 1Embryonic lethal or sterile W09B12.1 CG17907 Acetylcholineesterase T27F2.1 CG8264 Member of the mammalian SKIP (Ski interacting protein) homolog gene Acute lethal or lethal class ZC434.5 CG5394 predicted mitochondrial glutamyl-tRNA synthetase (GluRS) Acute lethal or lethal B0511.6 CG6375 helicase Embryonic lethal or sterile DY3.2 CG10119 Nuclear lamin; LMN-1 protein Growth delay or arrested in growth R13G10.1 CG11397 homolog of the SMC4 subunit of mitotic condensin Wild Type T26E3.7 CG3612 Predicted mitochondrial protein. Growth delay or arrested in growth Y113G7A.3 CG1250 GTPase activator, ER to Golgi prot transport, component of the Golgi Acute lethal or lethal stack Y43B11AR.4 CG11276 Ribosomal protein S4 (RpS4), structural constituent of ribosome involved Acute lethal or lethal in protein biosynthesis which is a component of the cytosolic small ribosomal subunit Y46G5A.4 CG5931 Y46G5A.4 gene Acute lethal or lethal Y71F9AL.17 CG7961 Alpha subunit of the coatomer (COPI) complex Acute lethal or lethal Y76B12C.7 CG10110 Gene cleavage and polyadenylation specificity factor Embryonic lethal or sterile Y37D8A.10 CG1751 Unknown function Embryonic lethal or sterile CG7765 C06G3.2 Member of the Kinesin-Like Protein gene class CG10922 C44E4.4 RNA-binding protein Embryonic lethal or sterile CG4145 F01G12.5 alpha-2 type IV collagen Embryonic lethal or sterile CG13391 F28H1.3 apredicted cytoplasmic alanyl-tRNA synthetase (AlaRS) Growth delay or arrested in growth CG7765 R05D3.7 Member of the UNCoordinated gene class Embryonic lethal or sterile CG7398 R06A4.4 Member of the IMportin Beta family gene class Embryonic lethal or sterile CG7436 T17E9.2 Unknown function Embryonic lethal or sterile CG2666 T25G3.2 putative chitin synthase Embryonic lethal or sterile CG17603 W04A8.7 TATA-binding protein associated factor TAF1L (TAFII250) Embryonic lethal or sterile -
TABLE 1-LD Dm SEQ ID SEQ ID Target ID identifier NO NA NO AA Function (based on Flybase) LD001 CG11276 1 2 Ribosomal protein S4 (RpS4), structural constituent of ribosome involved in protein biosynthesis which is a component of the cytosolic small ribosomal subunit LD002 CG8055 3 4 Carrier protein with putatively involved in intracellular protein transport LD003 CG3395 5 6 Ribosomal protein S9 (RpS9), structural constituent of ribosome involved in protein biosynthesis which is a component of the cytosolic small ribosomal subunit LD006 CG3180 7 8 RNA polymerase II 140 kD subunit (RpII140), DNA-directed RNA polymerase activity (EC:2.7.7.6) involved in transcription from Pol II promoter which is a component of the DNA-directed RNA polymerase II, core complex LD007 CG7269 9 10 Helicase at 25E (Hel25E), also known in FlyBase as Dbp25F, Hel, I(2)25Eb and I(2)k11511, pre- mRNA splicing factor activity involved in nuclear mRNA splicing, via spliceosome which is localized to the nucleus LD010 CG1250 11 12 GTPase activator, ER to Golgi prot transport, component of the Golgi stack LD011 CG1404 13 14 Tutative RAN small monomeric GTPase (cell adhesion) LD014 CG1088 15 16 V-ATPase E subunit LD015 CG2331 17 18 Transitional endoplasmic reticulum ATPase TER94, Golgi organization and biogenesis LD016 CG17369 19 20 V-ATPase B subunit LD018 CG1915 21 22 Sallimus (sls), myosin-light-chain kinase activity (EC:2.7.1.117) involved in mitotic chromosome condensation which is localized to the nucleus LD027 CG6699 23 24 Beta-coatamer protein, subunit of a multimeric complex that forms a membrane vesicle coat -
TABLE 1-PC Dm SEQ ID SEQ ID Target ID identifier NO NA NO AA Function (based on Flybase) PC001 CG11276 247 248 Ribosomal protein S4 (RpS4), structural constituent of ribosome involved in protein biosynthesis which is a component of the cytosolic small ribosomal subunit PC003 CG3395 249 250 Ribosomal protein S9 (RpS9), structural constituent of ribosome involved in protein biosynthesis which is a component of the cytosolic small ribosomal subunit PC005 CG2746 251 252 Ribosomal protein L19, structural constituent of ribosome involved in protein biosynthesis which is localised to the ribosome PC010 CG1250 253 254 GTPase activator, ER to Golgi prot transport, component of the Golgi stack PC014 CG1088 255 256 V-ATPase E subunit PC016 CG17369 257 258 V-ATPase B subunit PC027 CG6699 259 260 Beta-coatamer protein, subunit of a multimeric complex that forms a membrane vesicle coat -
TABLE 1-EV Dm SEQ ID SEQ ID Target ID identifier NO NA NO AA Function (based on Flybase) EV005 CG2746 513 514 Ribosomal protein L19, structural constituent of ribosome involved in protein biosynthesis which is localised to the ribosome EV009 CG9261 515 516 Protein involved with Na+/K+− exchanging ATPase complex EV010 CG1250 517 518 GTPase activator, ER to Golgi prot transport, component of the Golgi stack EV015 CG2331 519 520 Transitional endoplasmic reticulum ATPase TER94, Golgi organization and biogenesis EV016 CG17369 521 522 V-ATPase B subunit -
TABLE 1-AG Dm SEQ ID SEQ ID Target ID identifier NO NA NO AA Function (based on Flybase) AG001 CG11276 601 602 Ribosomal protein S4 (RpS4), structural constituent of ribosome involved in protein biosynthesis which is a component of the cytosolic small ribosomal subunit AG005 CG2746 603 604 Ribosomal protein L19, structural constituent of ribosome involved in protein biosynthesis which is localised to the ribosome AG010 CG1250 605 606 GTPase activator, ER to Golgi prot transport, component of the Golgi stack AG014 CG1088 607 608 V-ATPase E subunit AG016 CG17369 609 610 V-ATPase B subunit -
TABLE 1-TC Dm SEQ ID SEQ ID Target ID identifier NO NA NO AA Function (based on Flybase) TC001 CG11276 793 794 Ribosomal protein S4 (RpS4), structural constituent of ribosome involved in protein biosynthesis which is a component of the cytosolic small ribosomal subunit TC002 CG8055 795 796 Protein with putatively involved in intracellular protein transport TC010 CG1250 797 798 GTPase activator, ER to Golgi prot transport, component of the Golgi stack TC014 CG1088 799 800 V-ATPase E subunit TC015 CG2331 801 802 Transitional endoplasmic reticulum ATPase TER94, Golgi organization and biogenesis -
TABLE 1-MP Dm SEQ ID SEQ ID Target ID identifier NO NA NO AA Function (based on Flybase) MP001 CG11276 888 889 Ribosomal protein S4 (RpS4), structural constituent of ribosome involved in protein biosynthesis which is a component of the cytosolic small ribosomal subunit MP002 CG8055 890 891 Carrier protein with putatively involved in intracellular protein transport MP010 CG1250 892 893 GTPase activator, ER to Golgi prot transport, component of the Golgi stack MP016 CG17369 894 895 V-ATPase B subunit MP027 CG6699 896 897 Beta-coatamer protein, subunit of a multimeric complex that forms a membrane vesicle coat -
TABLE 1-NL Dm SEQ ID SEQ ID Target ID identifier NO NA NO AA Function (based on Flybase) NL001 CG11276 1071 1072 Ribosomal protein S4 (RpS4), structural constituent of ribosome involved in protein biosynthesis which is a component of the cytosolic small ribosomal subunit NL002 CG8055 1073 1074 Protein with putatively involved in intracellular protein transport NL003 CG3395 1075 1076 Ribosomal protein S9 (RpS9), structural constituent of ribosome involved in protein biosynthesis which is a component of the cytosolic small ribosomal subunit NL004 CG6141 1077 1078 Ribosomal protein L9, structural constituent of ribosome involved in protein biosynthesis which is localised to the ribosome NL005 CG2746 1079 1080 Ribosomal protein L19, structural constituent of ribosome involved in protein biosynthesis which is localised to the ribosome NL006 CG3180 1081 1082 RNA polymerase II 140 kD subunit (RpII140), DNA-directed RNA polymerase activity (EC:2.7.7.6) involved in transcription from Pol II promoter which is a component of the DNA-directed RNA polymerase II, core complex NL007 CG7269 1083 1084 Helicase at 25E (Hel25E), also known in FlyBase as Dbp25F, Hel, I(2)25Eb and I(2)k11511, pre- mRNA splicing factor activity involved in nuclear mRNA splicing, via spliceosome which is localized to the nucleus NL008 CG3416 1085 1086 Protein with endopeptidase activity involved in proteolysis and peptidolysis which is a component of the proteasome regulatory particle, lid subcomplex (sensu Eukarya) NL009 CG9261 1087 1088 Protein involved with Na+/K+− exchanging ATPase complex NL010 CG1250 1089 1090 GTPase activator, ER to Golgi prot transport, component of the Golgi stack NL011 CG1404 1091 1092 Putative RAN small monomeric GTPase (cell adhesion) NL012 CG17248 1093 1094 N-synaptobrevin; v-SNARE, vesicle-mediated transport, synaptic vesicle NL013 CG18174 1095 1096 Putative proteasome regulatory particle, lid subcomplex, rpn11 NL014 CG1088 1097 1098 V-ATPase E subunit NL015 CG2331 1099 1100 Transitional endoplasmic reticulum ATPase TER94, Golgi organization and biogenesis NL016 CG17369 1101 1102 V-ATPase B subunit NL018 CG1915 1103 1104 Sallimus (sls), myosin-light-chain kinase activity (EC:2.7.1.117) involved in mitotic chromosome condensation which is localized to the nucleus NL019 CG3320 1105 1106 Rab-protein 1 involved in cell adhesion NL021 CG10110 1107 1108 Gene cleavage and polyadenylation specificity factor NL022 CG10689 1109 1110 Product with RNA helicase activity (EC:2.7.7.-) involved in nuclear mRNA splicing, via spliceosome which is a component of the spliceosome complex NL023 CG17907 1111 1112 Acetylcholineesterase NL027 CG6699 1113 1114 Beta-coatomer protein -
TABLE 1-CS Dm SEQ ID SEQ ID Target ID identifier NO NA NO AA Function (based on Flybase) CS001 CG11276 1682 1683 Ribosomal protein S4 (RpS4), structural constituent of ribosome involved in protein biosynthesis which is a component of the cytosolic small ribosomal subunit CS002 CG8055 1684 1685 Carrier protein with putatively involved in intracellular protein transport CS003 CG3395 1686 1687 Ribosomal protein S9 (RpS9), structural constituent of ribosome involved in protein biosynthesis which is a component of the cytosolic small ribosomal subunit CS006 CG3180 1688 1689 RNA polymerase II 140 kD subunit (RpII140), DNA-directed RNA polymerase activity (EC:2.7.7.6) involved in transcription from Pol II promoter which is a component of the DNA-directed RNA polymerase II, core complex CS007 CG7269 1690 1691 Helicase at 25E (Hel25E), also known in FlyBase as Dbp25F, Hel, I(2)25Eb and I(2)k11511, pre- mRNA splicing factor activity involved in nuclear mRNA splicing, via spliceosome which is localized to the nucleus CS009 CG9261 1692 1693 Protein involved with Na+/K+− exchanging ATPase complex CS011 CG1404 1694 1695 Tutative RAN small monomeric GTPase (cell adhesion) CS013 CG18174 1696 1697 Putative proteasome regulatory particle, lid subcomplex, rpn11 CS014 CG1088 1698 1699 V-ATPase E subunit CS015 CG2331 1700 1701 Transitional endoplasmic reticulum ATPase TER94, Golgi organization and biogenesis CS016 CG17369 1702 1703 V-ATPase B subunit CS018 CG1915 1704 1705 Sallimus (sls), myosin-light-chain kinase activity (EC:2.7.1.117) involved in mitotic chromosome condensation which is localized to the nucleus -
TABLE 1-PX Dm SEQ ID SEQ ID Target ID identifier NO NA NO AA Function (based on Flybase) PX001 CG11276 2100 2101 Ribosomal protein S4 (RpS4), structural constituent of ribosome involved in protein biosynthesis which is a component of the cytosolic small ribosomal subunit PX009 CG9261 2102 2103 Protein involved with Na+/K+− exchanging ATPase complex PX010 CG1250 2104 2105 GTPase activator, ER to Golgi prot transport, component of the Golgi stack PX015 CG2331 2106 2107 Transitional endoplasmic reticulum ATPase TER94, Golgi organization and biogenesis PX016 CG17369 2108 2109 V-ATPase B subunit -
TABLE 1-AD Dm SEQ ID SEQ ID Target ID identifier NO NA NO AA Function (based on Flybase) AD001 CG11276 2364 2365 Ribosomal protein S4 (RpS4), structural constituent of ribosome involved in protein biosynthesis which is a component of the cytosolic small ribosomal subunit AD002 CG8055 2366 2367 Carrier protein with putatively involved in intracellular protein transport AD009 CG9261 2368 2369 Protein involved with Na+/K+− exchanging ATPase complex AD015 CG2331 2370 2371 Transitional endoplasmic reticulum ATPase TER94, Golgi organization and biogenesis AD016 CG17369 2372 2373 V-ATPase B subunit -
TABLE 2-LD Primer Forward Primer Reverse cDNA Sequence (sense strand) Target ID 5′ → 3′ 5′ → 3′ 5′ → 3′ LD001 SEQ ID NO: 25 SEQ ID NO: 26 SEQ ID NO: 1 GGCCCCAAGAA TAGCGGATGGT GGCCCCAAGAAGCATTTGAAGCGTTTGAATGCCCCAAAAGCATGGATGTTGGATAAATTGG GCATTTGAAGCG GCGDCCRTCRTG GAGGTGTTTTCGCACCTCGCCCATCTACAGGACCTCACAAATTGCGAGAGTCTTTGCCCTT GGTGATCTTCCTACGTAACCGATTGAAGTATGCTTTGACTAACAGCGAAGTTACTAAGATTG TTATGCAAAGGTTAATCAAAGTAGATGGAAAAGTGAGGACCGACTCCAATTACCCTGCTGG GTTTATGGATGTTATTACCATTGAAAAAACTGGTGAATTTTTCCGACTCATCTATGATGTTAA AGGACGATTTGCAGTGCATCGTATTACTGCTGAGGAAGCAAAGTACAAACTATGCAAAGTC AGGAGGATGCAAACTGGCCCCAAAGGAATTCCCTTCATAGTGACACACGACGGCCGCACC ATCCGCTA LD002 SEQ ID NO: 27 SEQ ID NO: 28 SEQ ID NO: 3 GAGCGGCCAT GCAATGTCATC GCAATGTCATCCATCATGTCGTGTACATTGTCCACGTCCAAGTTTTTATGGGCTTTCTTAAG GCAAGCVCTBA CATCAKRTCRT AGCTTCAGCTGCATTTTTCATAGATTCCAATACTGTGGTGTTCGTACTAGCTCCCTCCAGAG ARMRRAAG GCAC CTTCTCGTTGAAGTTCAATAGTAGTTAAAGTGCCATCTATTTGCAACTGATTTTTTTCTAATC GCTTCTTCCGCTTCAGCGCTTGCATGGCCGCTC LD003 SEQ ID NO: 29 SEQ ID NO: 30 SEQ ID NO: 5 TCGGTCTTCTC CAGGTTCTTCC CAGGTTCTTCCTCTTGACGCGTCCAGGGCGACCACCACCGAATGGAGATTTGAGCGAGAA GAAGACNTAYG TCTTKACRCGD GTCAATATGCTTCTGGGAATCAAGTCTCACAATGAAGCTTGGAATATTCACGACCTGCTTAC TKAC CC GAACCCTGATATGTCTTTGACGGACCAGCACACGAGCATGATGGATTGATTTTGCAAGCCC CAACTTGAAAACTTGTGTTTGGAGACGTCGTTCCAAGAAATCTTCAATCTTCAAACCCAAGA CGTAATCAAGCTTCATACGGGTTTCATCCAACACTCCAATACGCACCAACCGACGAAGAAG AGCATTGCCTTCAAACAACCTGCGCTGATCTTTCTCTTCCAAAGTCAGAAGTTCTCTGGCAG CTTTACGGATTTTTGCCAAGGTATACTTGACTCGCCACACTTCACGTTTGTTCCTAAGACCA TATTCTCCTATGATTTTCAACTCCTGATCAAGACGTGCCTTTTCATAAGGTCGCCTGGGA LD006 SEQ ID NO: 31 SEQ ID NO: 32 SEQ ID NO: 7 GGAGCGAGAC CTCGAACTGCT GGAGCGAGACTACACAACTATGGCTGGCAGGTGTTGGTTGCTTCTGGTGTGGTGGAATAC TACAACAAYKA CYTCYTGATCR ATCGACACTCTTGAAGAAGAAACTGTCATGATTGCGATGAATCCTGAGGATCTTCGGCAGG YRGYTGGC CC ACAAAGAATATGCTTATTGTACGACCTACACCCACTGCGAAATCCACCCGGCCATGATCTT GGGCGTTTGCGCGTCTATTATACCTTTCCCCGATCATAACCAGAGCCCAAGGAACACCTAC CAGAGCGCTATGGGTAAGCAAGCTATGGGGGTCTACATTACGAATTTCCACGTGCGGATG GACACCCTGGCCCACGTGCTATACTACCCGCACAAACCTCTGGTCACTACCAGGTCTATG GAGTATCTGCGGTTCAGAGAATTACCAGCCGGGATCAACAGTATAGTTGCTATTGCTTGTT ATACTGGTTATAATCAAGAAGATTCTGTTATTCTGAACGCGTCTGCTGTGGAAAGAGGATTT TTCCGATCCGTGTTTTATCGTTCCTATAAAGATGCCGAATCGAAGCGAATTGGCGATCAAG AAGAGCAGTTCGAG LD007 SEQ ID NO: 33 SEQ ID NO: 34 SEQ ID NO: 9 CCGAAGAAGGA CGATGCAAGTA CCGAAGAAGGATGTGAAGGGTACTTACGTATCCATACACAGTTCAGGCTTCAGAGATTTTT YGTSAAGGGYAC GGTGTCKGART TATTGAAACCAGAAATTCTAAGAGCTATAGTTGACTGCGGTTTTGAACACCCTTCAGAAGTT CYTC CAGCACGAATGTATTCCTCAAGCTGTCATTGGCATGGACATTTTATGTCAAGCCAAATCTGG TATGGGCAAAACGGCAGTGTTTGTTCTGGCGACACTGCAACAATTGGAACCAGCGGACAAT GTTGTTTACGTTTTGGTGATGTGTCACACTCGTGAACTGGCTTTCCAAATCAGCAAAGAGTA CGAGAGGTTCAGTAAATATATGCCCAGTGTCAAGGTGGGCGTCTTTTTCGGAGGAATGCCT ATTGCTAACGATGAAGAAGTATTGAAAAACAAATGTCCACACATTGTTGTGGGGACGCCTG GGCGTATTTTGGCGCTTGTCAAGTCTAGGAAGCTAGTCCTCAAGAACCTGAAACACTTCAT TCTTGATGAGTGCGATAAAATGTTAGAACTGTTGGATATGAGGAGAGACGTCCAGGAAATC TACAGAAACACCCCTCACACCAAGCAAGTGATGATGTTCAGTGCCACACTCAGCAAAGAAA TCAGGCCGGTGTGCAAGAAATTCATGCAAGATCCAATGGAGGTGTATGTAGACGATGAAG CCAAATTGACGTTGCACGGATTACAACAGCATTACGTTAAACTCAAAGAAAATGAAAAGAAT AAAAAATTATTTGAGTTGCTCGATGTTCTCGAATTTAATCAGGTGGTCATTTTTGTGAAGTCC GTTCAAAGGTGTGTGGCTTTGGCACAGTTGCTGACTGAACAGAATTTCCCAGCCATAGGAA TTCACAGAGGAATGGACCAGAAAGAGAGGTTGTCTCGGTATGAGCAGTTCAAAGATTTCCA GAAGAGAATATTGGTAGCTACGAATCTCTTTGGGCGTGGCATGGACATTGAAAGGGTCAAC ATTGTCTTCAACTATGATATGCCAGAGGACTCCGACACCTACTTGCATCG LD010 SEQ ID NO: 35 SEQ ID NO: 36 SEQ ID NO: 11 CTCTCAAGGAT CGCCATTGGGC CTCTCAAGGATTCGTTGCAGATGTCTTTGAGCTTGTTGCCCCCGAATGCCTTGATAGGGTT TCKYTRCARAT RATGGTYTCKCC GATTACCTTTGGGAAGATGGTCCAAGTGCACGAACTAGGTACCGAGGGCTGCAGCAAATC GTC TTACGTTTTCCGAGGGACGAAAGACCTCACAGCTAAGCAAGTTCAAGAGATGTTGGAAGTG GGCAGAGCCGCAGTAAGTGCTCAACCTGCTCCTCAACAACCAGGACAACCCATGAGGCCT GGAGCACTCCAGCAAGCTCCTACGCCACCAGGAAGCAGGTTCCTTCAACCCATCTCGAAA TGCGACATGAACCTCACTGATCTTATTGGAGAGTTGCAAAGAGACCCATGGCCTGTCCACC AAGGCAAATGCGCCCTTAGATCGACCGGGACAGCTTTATCGATAGCCATTGGGTTGTTGGA GTGCACATACGCCAATACTGGTGCCAGGGTCATGCTATTCGTTGGAGGACCTTGCTCTCAA GGCCCTGGTCAAGTCTTGAATGATGATCTGAAGCAACCTATCAGATCTCACCACGACATCC AAAAAGACAATGCCAAATACATGAAGAAAGCAATCAAGCACTATGATAATTTAGCGATGAGA GCAGCAACGAATGGCCACTGCGTTGACATATATTCATGCGCTTTGGATCAGACAGGATTGA TGGAGATGAAACAGTGTTGTAATTCAACAGGGGGACATATGGTCATGGGCGACTCGTTCAA TTCTTCCCTGTTCAAGCAAACGTTCCAGCGCATATTTTCGAAAGATCAGAAAAACGAGCTGA AGATGGCATTTAATGGTACTCTGGAGGGTCAAGTGTTCCAGGGAGTTGAAAATTCAAGGCG GTATTGGATCTTGTGTTTCGTTGAATGTGAAGAATCCTTTGGTTTCCGACACCGAAATAGGA ATGGGTAACACGGTCCAGTGGAAAATGTGTACGGTAACTCCAAGTACTACCATGGCCTTGT TCTTCGAGGTCGTCAACCAACATTCCGCTCCCATACCTCAAGGGGGAAGGGGCTGCATAC AGTTCATCACGCAATATCAGCATGCTAGTGGCCAGAAGAGGATCCGAGTAACGACAGTTGC TAGAAACTGGGCCGATGCTTCCGCTAATATACATCATGTCAGTGCTGGATTCGATCAGGAG GCAGCCGCAGTGATAATGGCGAGGATGGCAGTTTACAGAGCGGAATCAGACGATAGCCCT GATGTTTTGAGATGGGTCGATAGGATGTTGATACGTCTGTGCCAGAAATTCGGCGAATATA ACAAGGACGACCCGAATTCGTTCCGCTTGGGCGAAAACTTCAGCCTCTACCCGCAGTTCAT GTACCATTTGAGAAGGTCACAGTTCCTGCAGGTGTTTAACAATTCTCCCGACGAAACGTCC TTCTACAGGCACATGCTTATGCGCGAAGACCTCACGCAGTCGCTGATCATGATCCAGCCGA TACTCTACAGCTACAGTTTCAATGGACCACCAGAACCTGTGCTTTTGGATACGAGTTCCATC CAACCCGATAGAATTCTGCTCATGGACACGTTCTTCCAGATTCTGATATTCCATGGCGAAAC CATCGCCCAATGGCG LD011 SEQ ID NO: 37 SEQ ID NO: 38 SEQ ID NO: 13 CCCACTTTCAA GTGGAAGCAG GTGGAAGCAGGGCTGGCATGGCGACAAATTCTAGATTGGGATCACCAATAAGCTTCCTAG GTGYGTRYTRG GGCWGGCATK CTAGCCATAGGAAAGGCTTCTCAAAGTTGTAGTTAGATTTGGCAGAGATATCATAGTACTGC TCGG GCRAC AAATTCTTCTTCCTATGAAAGACAATACTTTTCGCTTTTACTTTTCTGTCTTTGATGTCAACCT TGTTCCCGCAAAGTACTATCGGGATATTTTCACAGACTCTGACAAGATCTCTGTGCCAATTT GGTACATTCTTGTATGTAACTCTGGAAGTTACATCAAACATGATAATAGCACACTGTCCCTG AATGTAATATCCATCACGGAGACCACCAAACTTCTCCTGACCGGCAGTGTCCCATACATTG AACCGAATAGGGCCCCTGTTTGTATGGAAGACCAGAGGATGGACTTCAACTCCCAAAGTAG CTACATATCTTTTTTCAAATTCACCAGTCATATGACGTTTCACAAATGTCGTTTTTCCAGTAC CTCCATCTCCGACCAACACACACTTGAAAGTGGG LD014 SEQ ID NO: 39 SEQ ID NO: 40 SEQ ID NO: 15 CGCAGATCAAR CGGATCTCGG CGCAGATCAAGCATATGATGGCTTTCATTGAACAAGAGGCAAACGAAAAGGCAGAAGAAAT CAYATGATGGC GCASMARYTGC CGATGCCAAGGCCGAGGAAGAATTTAATATTGAAAAGGGGCGCCTTGTTCAGCAACAACGT CTCAAGATTATGGAATATTATGAGAAGAAAGAGAAACAGGTCGAACTCCAGAAAAAAATCCA ATCGTCTAACATGTTGAATCAGGCTCGATTGAAAGTATTGAAGGTTAGGGAAGATCACGTT CGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACGACCAGGGAAAA TATTCCCAAATCCTGGAAAGCCTCATTTTGCAGGGATTATATCAGCTTTTTGAGAAAGATGT TACCATTCGAGTTCGGCCCCAGGACCGAGAACTGGTCAAATCCATCATTCCCACCGTCACG AACAAGTATAAAGATGCCACCGGTAAGGACATCCATCTGAAAATTGATGACGAAATCCATCT GTCCCAAGAAACCACCGGGGGAATCGACCTGCTGGCGCAGAAAAACAAAATCAAGATCAG CAATACTATGGAGGCTCGTCTGGAGCTGATTTCGCAGCAACTTCTGCCCGAGATCCG LD014_F1 SEQ ID NO: 159 TCTAGAATGTTGAATCAGGCTCGATTGAAAGTATTGAAGGTTAGGGAAGATCACGTTCGTA CCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACGCCCGGG LD014_F2 SEQ ID NO: 160 TCTAGAAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCA CAAACGCCCGGG LD014_C1 SEQ ID NO: 161 TCTAGAATGTTGAATCAGGCTCGATTGAAAGTATTGAAGGTTAGGGAAGATCACGTTCGTA CCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACGATGTTGAATCAGGCT CGATTGAAAGTATTGAAGGTTAGGGAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGT AAACGACTTGGTCAGGTCACAAACGATGTTGAATCAGGCTCGATTGAAAGTATTGAAGGTT AGGGAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCACA AACGCCCGGG LD014_C2 SEQ ID NO: 162 TCTAGAAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCA CAAACGAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCA CAAACGAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCA CAAACGAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCA CAAACGAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCA CAAACGCCCGGG LD015 SEQ ID NO: 41 SEQ ID NO: 42 SEQ ID NO: 17 CGCCATCCRTC GCAATGGCATC GCAATGGCATCAAGTTCATCGATGAAGATGATCGCCGGAGAGTTTTTGTCAGCTTCTTCAA GCTSTTCAAGGC AAKYTCRTCRA AAGCTTTGCGCAAGTTACTCTCAGACTCGCCAGCGAGTTTGCTCATGATCTCCGGCCCGTT TG TATCAAGAAGAAGAACGCCCCAGTCTCATTAGCCACGGCGCGAGCAATCAGGGTCTTACC CGTACCAGGGGGACCATACAGCAGTATACCCCTAGGGGGCTTCACGCCGATAGCCTTGAA GAGCGATGGATGGCG LD016 SEQ ID NO: 43 SEQ ID NO: 44 SEQ ID NO: 19 GACTGTGTCTG GGAATAGGATG GGAATAGGATGGGTAATGTCGTCGTTGGGCATAGTCAATATAGGAATCTGGGTGATGGATC GTGTRAACGG GGTRATRTCGT CGTTACGTCCTTCAACACGGCCGGCACGTTCATAGATGGTAGCTAAATCGGTGTACATGTA WCC CG ACCTGGGAAACCACGACGACCAGGCACCTCTTCTCTGGCAGCAGATACCTCACGCAAAGC TTCTGCATACGAAGACATATCTGTCAAGATGACCAAGACGTGCTTCTCACATTGGTAAGCC AAGAATTCGGCAGCTGTCAAAGCCAGACGAGGTGTAATAATTCTTTCAATGGTAGGATCGT TGGCCAAATTCAAGAACAGGCAGACATTCTCCATAGAACCGTTCTCTTCGAAATCCTGTTTG AAGAACCTAGCTGTTTCCATGTTAACACCCATAGCAGCGAAAACAATAGCAAAGTTATCTTC ATGATCATCAAGTACAGATTTACCAGGAATCTTGACTAAACCAGCCTGTCTACAGATCTGGG CAGCAATTTCATTGTGAGGCAGACCAGCTGCAGAGAAAATGGGGATCTTCTGACCACGAG CAATGGAGTTCATCACGTCAATAGCTGTAATACCCGTCTGGATCATTTCCTCAGGATAGATA CGGGACCACGGATTGATTGGTTGACCCTGGATGTCCAAGAAGTCTTCAGCCAAAATTGGG GGACCTTTGTCGATGGGTTTTCCTGATCCATTGAAAACACGTCCCAACATATCTTCAGAAAC AGGAGTCCTCAAAATATCTCCTGTGAATTCACAAGCGGTGTTTTTGGCGTCGATTCCTGAT GTGCCCTCGAACACTTGAACCACAGCTTTTGACCCACTGACTTCCAGAACTTGTCCCGAAC GTATAGTGCCATCAGCCAGTTTGAGTTGTACGATTTCATTGTACTTGGGGAACTTAACATCT TCGAGGATTACCAGAGGACCGTTCACACCAGACACAGTC LD018 SEQ ID NO: 45 SEQ ID NO: 46 SEQ ID NO: 21 CACCTGGTTCA GTGCATCGGTA CACCTGGTTCAAGGATGGGCAGCGGATAACGGAGTCGCAGAAATACGAGAGCACCTTCTC AGRATGGVCAR CCAHSCHGCRTC GAACAACCAAGCCTCCTTGAGGGTAAAACAAGCCCAGTCTGAGGACTCGGGACACTACAC MG TTTGTTGGCGGAGAACCCTCAAGGCTGCATAGTGTCATCTGCTTACTTAGCCATAGAACCG GTAACCACCCAGGAAGGGTTGATCCACGAGTCCACCTTCAAGCAGCAACAGACCGAAATG GAGCAAATCGACACCAGCAAGACCTTGGCGCCTAACTTCGTCAGGGTTTGCGGGGATAGA GACGTGACCGAGGGCAAGATGACCCGCTTCGACTGTCGCGTCACTGGTCGTCCTTATCCA GACGTGACATGGTACATAAACGGTCGACAAGTCACCGACGACCACAACCACAAGATTTTGG TTAACGAATCCGGAAACCATGCCCTGATGATCACCACCGTGAGCAGGAACGACTCAGGAG TAGTGACCTGCGTCGCCAGGAACAAGACGGGAGAAACCTCCTTCCAGTGCAACCTTAACG TCATCGAAAAGGAACAGGTAGTCGCGCCCAAGTTCGTGGAGAGATTTACCACAGTCAACGT GGCAGAAGGAGAACCAGTGTCTCTGCGCGCTAGAGCTGTTGGCACGCCGGTGCCGCGAA TCACTTGGCAGAGGGACGGGGCGCCCCTAGCCAGCGGGCCCGACGTTCGCATCGCGATT GACGGTGGAGCCTCTACTTTGAATATCTCGAGGGCCAAGGCCTCGGATGCTGCATGGTAC CGATGCAC LD027 SEQ ID NO: 47 SEQ ID NO: 48 SEQ ID NO: 23 CCATGGTGGC GGTATAGATGA CCATGGTGGCGATAAACCATACTTGATATCGGGAGCAGACGATCGGTTGGTTAAAATCTGG GAYAARCCVTAC ARCARTCDCCV GACTATCAAAACAAAACGTGTGTCCAAACCTTGGAAGGACACGCCCAAAACGTAACCGCG ACCCA GTTTGTTTCCACCCTGAACTACCTGTGGCTCTCACAGGCAGCGAAGATGGTACCGTTAGAG TTTGGCATACGAATACACACAGATTAGAGAATTGTTTGAATTATGGGTTCGAGAGAGTGTG GACCATTTGTTGCTTGAAGGGTTCGAATAATGTTTCTCTGGGGTATGACGAGGGCAGTATA TTAGTGAAAGTTGGAAGAGAAGAACCGGCAGTTAGTATGGATGCCAGTGGCGGTAAAATAA TTTGGGCAAGGCACTCGGAATTACAACAAGCTAATTTGAAGGCGCTGCCAGAAGGTGGAG AAATAAGAGATGGGGAGCGTTTACCTGTCTCTGTAAAAGATATGGGAGCATGTGAAATATA CCCTCAAACAATCCAACATAATCCGAATGGAAGATTCGTTGTAGTATGCGGAGACGGCGAA TATATCATTTACACAGCGATGGCTCTACGGAACAAGGCTTTTGGAAGCGCTCAAGAGTTTG TCTGGGCTCAGGACTCCAGCGAGTATGCCATTCGCGAGTCTGGTTCCACAATTCGGATATT CAAAAACTTCAAAGAAAGGAAGAACTTCAAGTCGGATTTCAGCGCGGAAGGAATCTACGGG GGTTTTCTCTTGGGGATTAAATCGGTGTCCGGTTTAACGTTTTACGATTGGGAAACTTTGGA CTTGGTGAGACGGATTGAAATACAACCGAGGGCGGTTTATTGGTCTGACAGTGGAAAATTA GTCTGTCTCGCAACGGAGGACAGCTACTTCATCCTTTCTTATGATTCGGAGCAAGTTCAGA AGGCCAGGGAGAACAATCAAGTCGCAGAGGATGGCGTAGAGGCCGCTTTCGATGTGTTGG GGGAAATGAACGAGTCTGTCCGAACAGGTCTTTGGGTCGGAGACTGTTTCATCTATACC -
TABLE 2-PC Target Primer Forward Primer Reverse cDNA Sequence (sense strand) ID 5′ → 3′ 5′ → 3′ 5′ → 3′ PC001 SEQ ID NO: 261 SEQ ID NO: 262 SEQ ID NO: 247 CATTTGAAGCG CTTCGTGCCCT CATTTGAAGCGTTTAGCTGCTCCCAAAGCATGGATGTTGGACAAATTGGGGGGTGTCTTCGCCC TTTWRMYGCY TGCCRATKATR CTCGTCCATCCACCGGGCCTCACAAGTTGCGCGAATCCCTGCCTTTAGTGATTTTCCTTCGTAAC CC AABACG AGGCTGAAGTATGCCCTTACAAACAGTGAAGTCACTAAAATTGTCATGCAAAGGTTGATCAAAGT TGATGGTAAAGTGAGGACTGATTCTAATTACCCTGCTGGTTTCATGGATGTCATTACTATTGAGAA GACTGGTGAATTTTTCCGTCTGATCTATGATGTTAAAGGAAGATTTGCTGTGCACCGTATTACAGC TGAAGAGGCAAAATACAAGTTGTGTAAAGTAAGGAGAGTCCAAACTGGTCCCAAAGGAATCCCAT TTTTGGTAACACATGATGGCAGAACCATTCGTTACCCTGACCCCAACATCAAAGTGAATGACACA ATTCAAATGGAAATTGCTACATCTAAAATTCTTGACTACATCAAATTTGAATCTGGCAACCTCTGC ATGATCACGGGGAGG PC003 SEQ ID NO: 263 SEQ ID NO: 264 SEQ ID NO: 249 TCGGTCTTCTC CCCTGGTTCTT CCCTAGACGTCCCTATGAAAAGGCCCGTCTGGATCAGGAATTGAAAATTATCGGCGCCTTTGGTT GAAGACNTAYG CTTVRRRTTCT TACGAAACAAACGTGAAGTGTGGAGAGTAAAGTACACTTTGGCTAAAATCCGTAAAGCTGCTCGT TKAC TCCTC GAACTGCTCACCCTAGAAGAAAAAGAGCCTAAAAGATTGTTTGAAGGTAATGCACTTCTACGTCG TTTGGTGCGAATTGGTGTTCTGGATGAGAACAGGATGAAGCTTGATTATGTTTTGGGTCTGAAAA TTGAAGATTTCTTGGAAAGAAGGCTCCAAACTCAGGTGTTCAAATCTGGTCTGGCAAAGTCAATT CATCATGCTAGAGTACTGATTAGGCAGAGACACATCCGGGTGCGCAAGCAGGTGGTGAACATCC CCTCGTTCATCGTGCGGCTGGACTCGCAGAAGCACATCGACTTCTCCCTGAAGTCGCCCTTCGG GGGTGGCCGACCTGGCCGTGTCAA PC005 SEQ ID NO: 265 SEQ ID NO: 266 SEQ ID NO: 251 TGCGATGCGG TCCTGCTTCTT TGCGATGCGGCAAAAAGAAGGTGTGGTTGGATCCAAATGAAATCAACGAAATCGCCAACACCAA CAARAARAAGG SGYRGCRATW CTCAAGACAAAACATCCGTAAGCTCATCAAGGATGGTCTTATCATCAAGAAGCCAGTGGCAGTAC TBTGG CGYTC ACTCTAGGGCCCGTGTACGCAAGAACACTGAAGCCAGAAGGAAGGGAAGGCATTGTGGATTTG GAAAGAGGAAGGGTACGGCAAATGCCCGTATGCCTCAAAAGGAACTGTGGGTGCAGCGCATGC GCGTCCTCAGGCGCCTCCTCAAAAAGTACAGGGAGGCCAAGAAAATCGACCGCCATCTTTACCA CGCCCTGTACATGAAAGCGAAGGGTAACGTGTTCAGGAACAAGAGGGTCCTTATGGAGTACATC CACAAGAAGAAGGCAGAGAAGGCCAGGGCCAAGATGCTGTCTGACCAGGCTAACGCCAGGAGA TTGAAGGTGAAGCAGGCCAGGGAACGTAGGGAAGAGCGTATCGCCACCAAGAAGCAGG PC010 SEQ ID NO: 267 SEQ ID NO: 268 SEQ ID NO: 253 CTCTCAAGGAT CGCCATTGGG CTCTCAAGGATTCTTTGCAGATGTCGCTCAGCCTATTACCGCCCAACGCGTTGATTGGATTGATC TCKYTRCARAT CRATGGTYTCK ACGTTCGGAAAAAATGGTGCAAGTCCACGAACTGGGTACCGAAGGCTGCAGCAAGTCGTACGTGT GTC CC TCTGTGGAACGAAAGATCTCACCGCCAAGCAAGTCCAGGAGATGTTGGGCATTGGAAAAGGGTC ACCAAATCCCCAACAACAGCCAGGGCAACCTGGGCGGCCAGGGCAGAATCCCCAAGCTGCCCC TGTACCACCGGGGAGCAGATTCTTGCAGCCCGTGTCAAAATGCGACATGAACTTGACAGATCTG ATCGGGGAGTTGCAGAAAGACCCTTGGCCCGTACATCAGGGCAAAAGACCTCTTAGATCCACAG GCGCAGCATTGTCCATCGCTGTCGGCCTCTTAGAATGCACCTATCCGAATACGGGTGGCAGAAT CATGATATTCTTAGGAGGACCATGCTCTCAGGGTCCCGGCCAGGTGTTGAACGACGATTTGAAG CAGCCCATCAGGTCCCATCATGACATACACAAAGACAATGCCAAGTACATGAAGAAGGCTATCAA ACATTACGATCACTTGGCAATGCGAGCTGCCACCAACAGCCATTGCATCGACATTTACTCCTGCG CCCTGGATCAGACGGGACTGATGGAGATGAAGCAGTGCTGCAATTCCACCGGAGGGCACATGG TCATGGGCGATTCCTTCAATTCCTCTCTATTCAAACAAACCTTCCAGCGAGTGTTCTCAAAAGACC CGAAGAACGACCTCAAGATGGCGTTCAACGCCACCTTGGAGGTGAAGTGTTCCAGGGAGTTAAA AGTCCAAGGGGGCATCGGCTCGTGCGTGTCCTTGAACGTTAAAAGCCCTCTGGTTTCCGATACG GAACTAGGCATGGGGAATACTGTGCAGTGGAAACTTTGCACGTTGGCGCCGAGCTCTACTGTGG CGCTGTTCTTCGAGGTGGTTAACCAGCATTCGGCGCCCATACCACAGGGAGGCAGGGGCTGCA TCCAGCTCATCACCCAGTATCAGCACGCGAGCGGGCAAAGGAGGATCAGAGTGACCACGATTG CTAGAAATTGGGCGGACGCTACTGCCAACATCCACCACATTAGCGCTGGCTTCGACCAAGAAGC GGCGGCAGTTGTGATGGCCCGAATGGCCGGTTACAAGGCGGAATCGGACGAGACTCCCGACGT GCTCAGATGGGTGGACAGGATGTTGATCAGGCTGTGCCAGAAGTTCGGAGAGTACAATAAAGAC GATCCGAATTCGTTCAGGTTGGGGGAGAACTTCAGTCTGTATCCGCAGTTCATGTACCATTTGAG ACGGTCGCAGTTTCTGCAGGTGTTCAATAATTCTCCTGATGAAACGTCGTTTTATAGGCACATGC TGATGCGTGAGGATTTGACTCAGTCTTTGATCATGATCCAGCCGATTTTGTACAGTTACAGCTTCA ACGGGCCGCCCGAGCCTGTGTTGTTGGACACAAGCTCTATTCAGCCGGATAGAATCCTGCTCAT GGACACTTTCTTCCAGATACTCATTTTCCATGGAGAGACCATTGCCCAATGGCG PC014 SEQ ID NO: 269 SEQ ID NO: 270 SEQ ID NO: 255 CGCAGATCAAR CGGATCTCGG CTGATGTTCAAAAACAAATCAAACACATGATGGCTTTCATTGAACAAGAAGCCAATGAGAAAGCA CAYATGATGGC GCASMARYTGC GAAGAAATTGATGCCAAGGCAGAGGAGGAATTCAACATTGAAAAAGGGCGTTTGGTCCAGCAAC AGAGACTCAAGATCATGGAGTACTACGAGAAAAAGGAGAAGCAAGTCGAACTTCAAAAGAAAATT CAGTCCTCTAATATGTTGAATCAGGCTCGTTTGAAGGTGCTGAAAGTGAGAGAGGACCATGTCAG AGCAGTCCTGGAGGATGCTCGTAAAAGTCTTGGTGAAGTAACCAAAGACCAAGGAAAATACTCC CAAATTTTGGAGAGCCTAATCCTACAAGGACTGTTCCAGCTGTTCGAGAAGGAGGTGACGGTCC GCGTGAGACCGCAAGACAGGGACCTGGTCAGGTCCATCCTGCCCAACGTCGCTGCCAAATACA AGGACGCCACCGGCAAAGACATCCTACTCAAGGTGGACGATGAGTCGCACCTGTCTCAGGAGAT CACCGGAGGCGTCGATTTGCTCGCTCAGAAGAACAAGATCAAGATCAGCAACACGATGGAGGCT AGGTTGGATCTGATCGCTCA PC016 SEQ ID NO: 271 SEQ ID NO: 272 SEQ ID NO: 257 GACTGTGTCTG GGAATAGGAT GGAATAGGATGGGTGATGTCGTCGTTGGGCATAGTCAAGATGGGGATCTGCGTGATGGAGCCG GTGTRAACGG GGGTRATRTC TTGCGGCCCTCCACACGACCGGCGCGCTCGTAAATGGTGGCCAGATCGGTGTACATGTAACCG WCC GTCG GGGAAACCCCTACGGCCGGGCACTTCTTCTCGAGCGGCAGACACCTCACGCAACGCCTCCGCG TACGACGACATGTCGGTCAAGATGACCAGCACGTGCTTCTCGCACTGGTAGGCCAAGAATTCGG CGGCCGTCAGAGCCAAACGCGGCGTGATGATGCGCTCGATGGTCGGATCGTTGGCCAAGTTCA AGAACAGACACACGTTCTCCATCGAGCCGTTCTCTTCGAAGTCCTGCTTGAAGAACCTGGCAGTT TCCATGTTGACACCCATAGCAGCAAACACAATAGCAAAGTTGTCTTCATGGTCATCCAGCACAGA CTTGCCAGGTACTTTGACCAAGCCAGCCTGCCTACAAATCTGGGCTGCAATCTCATTGTGGGGC AGCCCAGCGGCGGAGAAGATCGGAATCTTCTGCCCTCTGGCGATAGAGTTCATCACGTCGATGG CCGTGATCCCAGTCTGGATCATTTCCTCGGGATAAATACGCGACCACGGGTTGATCGGCTGTCC TTGGATGTCGAGGTAGTCCTCAGCCAGGATCGGGGGACCTTTATCAATGGGTTTTCCTGATCCAT TGAAGACACGTCCCAGCATATCTTCTGATACTGGAGTTCTTAGAATATCTCCAGTGAACTCACAC ACCGTGTTCTTAGCATCAATACCTGATGTGCCTTCAAATACCTGAACAACTGCCTTTGATCCACTG ACTTCCAAAACTTGTCCAGATCGTAGAGTTCCATCTGCCAATTTGAGCTGGACAATTTCATTGAAT TTTGGAAACTTGACATCCTCAAGAATGACCAGTGGTCCGTTCACACCAGACACAGTC PC027 SEQ ID NO: 273 SEQ ID NO: 274 SEQ ID NO: 259 GGGCCAAGCA TGTGCCACCC GGGCCAAGCACAGTGAAATACAGCAAGCTAACTTGAAAGCACTACCAGAAGGAGCTGAAATCAG CWSYGAAATRC TAGTRCGRTG AGATGGAGAACGTTTGCCAGTCACAGTAAAGGACATGGGAGCATGCGAGATTTACCCACAAACA AG YTC ATCCAACACAACCCCAATGGGCGGTTTGTAGTGGTTTGTGGTGATGGAGAATACATAATATACAC GGCTATGGCCCTTCGTAACAAAGCATTTGGTAGCGCTCAAGAATTTGTATGGGCACAGGACTCC AGTGAATATGCCATCCGCGAATCCGGATCCACCATTCGAATCTTCAAGAATTTCAAAGAAAAAAA GAATTTCAAGTCCGACTTTGGTGCCGAAGGAATCTATGGTGGTTTTCTCTTGGGTGTGAAATCAG TGTCTGGCTTAGCTTTCTATGACTGGGAAACGCTTGAGTTAGTAAGGCGCATTGAAATACAGCCT AGAGCTATCTACTGGTCAGATAGTGGCAAGTTGGTATGCCTTGCTACCGAAGATAGCTATTTCAT ATTGTCCTATGACTCTGACCAAGTCCAGAAAGCTAGAGATAACAACCAAGTTGCCGAAGATGGAG TGGAGGCTGCCTTTGATGTCCTAGGTGAAATAAATGAATCCGTAAGAACAGGTCTTTGGGTAGGA GACTGCTTCATTTACACAAACGCAGTCAACCGTATCAACTACTTTGTGGGTGGTGAATTGGTAAC TATTGCACATCTGGACCGTCCTCTATATGTCCTGGGCTATGTACCTAGAGATGACAGGTTATACT TGGTTGATAAAGAGTTAGGAGTAGTCAGCTATCAATTGCTATTATCTGTACTCGAATATCAGACTG CAGTCATGCGACGAGACTTCCCAACGGCTGATCGAGTATTGCCTTCAATTCCAAAAGAACATCGC ACTAGGGTGGCACA -
TABLE 2-EV Target Primer Forward Primer Reverse cDNA Sequence (sense strand) ID 5′ → 3′ 5′ → 3′ 5′ → 3′ EV005 SEQ ID NO: 523 SEQ ID NO: 524 SEQ ID NO: 513 TGCGATGCGG TCCTGCTTCTT TGCGATGCGGCAAGAAGAAGGTTTGGCTGGATCCTAATGAAATAACTGAAATTGCTAATACA CAARAARAAGG SGYRGCRATW AACTCTAGACAAAACATCCGCAAACTGATTAAAGATGGTCTTATTATTAAAAAGCCTGTCGCG TBTGG CGYTC GTGCATTCTCGTGCACGTGTACGCAAAAATACTGAAGCCCGCAGGAAAGGTCGTCATTGTG GATTTGGTAAAAGGAAAGGAACTGCAAATGCTAGGATGCCCAGAAAGGAATTATGGATTCAA CGTATGAGAGTTCTCAGAAGGTTATTGAAGAAATATAGGGAAGCTAAGAAAATTGATAGGCA TTTATACCATGCTTTATATATGAAAGCTAAGGGAAATGTATTCAAGAATAAGAGAGTAATGAT GGACTATATCCATAAAAAGAAGGCGGAGAAAGCACGTACAAAGATGCTCAATGATCAAGCT GATGCAAGGAGGCTGAAAGTCAAAGAGGCACGTAAGCGACGTGAAGAGCGTATCGCTACG AAGAAGCAGGA EV009 SEQ ID NO: 525 SEQ ID NO: 526 SEQ ID NO: 515 GGGCCGTGGT GCAGCCCACG CCAACTCTCGATCCAAGCATTCCAAAATACAGGACTGAAGAATCTATAATAGGAACAAACCC CAGAAYATYWA CYYTGCACTC AGGAATGGGTTTTAGGCCAATGCCCGACAACAACGAAGAAAGTACCCTGATTTGGTTACAG YAAC GGTTCTAATAAAACAAACTACGAAAAATGGAAAATGAATCTCCTCTCATATTTAGACAAGTAT TACACTCCCGGAAAAATAGAAAAGGGAAATATTCCAGTAAAGCGCTGTTCATACGGAGAAAA ATTGATTAGGGGACAAGTATGTGATGTAGATGTGAGGAAATGGGAGCCGTGCACCCCGGAA AATCATTTTGATTACCTCAGAAATGCGCCTTGTATATTTCTGAAGCTGAACAGGATATATGGA TGGGAACCGGAGTACTACAACGATCCAAATGATCTTCCAGATGATATGCCGCAGCAGTTGA AGGACCATATACGTTATAATATCACCAATCCAGTGGAGAGAAATACCGTCTGGGTAACATGC GCAGGTGAAAATCCGGCAGACGTGGAGTACTTGGGCCCTGTGAAGTATTACCCATCTTTCC AGGGATTCCCCGGTTACTATTTTCCATATTTGAATTCTGAAGGGTACCTAAGTCCATTATTGG CGGTACAATTCAAGAGACCGGTGTCTGGTATTGTTATAAATATCGAGTGCAAAGCGTGGGCT GC EV010 SEQ ID NO: 527 SEQ ID NO: 528 SEQ ID NO: 517 CGGCTGACGT CGGCGTATTCT CTGGCGGCCACATGGTCATGGGTGATTCATTTAACTCTTCACTTTTCAAACAAACATTTCAAC GGAAYGTKTGG CCRAAYTTCTG GAGTATTTTCGAAAGATTCCAATGGAGACTTGAAGATGTCCTTCAACGCCATATTAGAAGTG CC GC AAGTGTTCTAGAGAACTTAAAGTACAAGGAGGTATAGGTCCTTGTGTCTCTCTAAATGTCAA AAATCCTCTTGTTTCTGATTTAGAAATAGGCATGGGTAACACAGTTCAGTGGAAACTGTGTA GCTTAAGTCCAAGCACTACGGTTGCCTTATTTTTCGAAGTTGTTAATCAGCATGCAGCACCC ATTCCTCAAGGGGGACGTGGATGCATTCAGTTTATTACTCAATATCAGCATTCAAGTGGTCA GAAAAAAATAAGGGTAACTACAATAGCAAGAAATTGGGCGGATGCCACTGCAAATATTCACC ATATTAGCGCTGGCTTTGACGAACAAACTGCGGCTGTTTTAATGGCGAGGATCGCTGTATAT AGAGCAGAAACTGATGAGAGTTCAGATGTTCTCAGATGGGTTGACAGAATGTTGATACGATT GTGTCAGAAATTTGGAGAATATAACAAAGATGACACCAACAGCTTCAGGCTCAGTGAAAAACT TCAGCTTATATCCACAGTTTATGTATCATCTACGTCGTTCCCAATTTCTACAAGTGTTCAATAA TTCACCAGATGAAACTTCATTCTATAGGCACATGTTGATGAGGGAAGATCGCAATCAG EV015 SEQ ID NO: 529 SEQ ID NO: 530 SEQ ID NO: 519 CGCTGTCGCAR CGATCAAAGC CGCCATCCGTCGCTGTTCAAGGCGATCGGCGTTAAGCCTCCAAGGGGTATTCTCCTTTACG GCRAARATGG GWCCRAAVCG GGCCTCCCGGCACGGGGAAAACGCTGATCGCCAGGGCCGTTGCCAACGAAACTGGTGCGT ACG TCTTCTTCCTCATCAATGGGCCCGAGATTATGAGCAAGCTGGCCGGAGAATCCGAGAGCAA TCTTAGAAAGGCTTTTGAAGAGGCTGATAAAAACTCTCCTGCAATCATCTTTATCGACGAATT AGACGCAATCGCTCCCAAGCGCGAGAAGACTCATGGTGAGGTAGAGAGACGCATCGTCTC CCAACTGTTGACTTTGATGGACGGCATGAAGAAAAGTTCCCATGTGATCGTGATGGCGGCC ACGAACAGGCCCAATTCCATCGACCCTGCACTCAGACGTTTCGGCCGATTCGACAGAGAGA TCGACATCGGTATCCCCGACGCTACTGGAAGATTAGAAGTACTCAGAATACACACCAAAAAC ATGAAATTGGCTGACGATGTAGATTTGGAACAGATTGCCGCAGAGACTCACGGTCATGTAG GTGCTGACTTGGCTTCTTTGTGCTCAGAGGCTGCCTTGCAACAAATTAGAGAAAAAATGGAC CTCATCGACTTAGATGATGAGCAGATCGATGCCGAAGTCCTAAATTCTCTGGCAGTTACCAT GGAGAACTTCCGTTACGCCATGTCTAAGAGCAGTCCGAGCGCTTTGCGCGAAACCGTCGT EV016 SEQ ID NO: 531 SEQ ID NO: 532 SEQ ID NO: 521 GTTCACCGGC CGGCATAGTC GACTGTGTCTGGTGTGAACGGACCGTTGGTGATCCTTGATAGTGTTAAGTTTCCAAAATTTA GAYATYCTGCG AGAATSGGRAT ACGAAATTGTACAGCTCAAGTTATCAGATGGAACAGTTAGGTCTGGACAAGTTTTGGAAGTC CTG AGTGGACAGAAGGCGGTTGTCCAAGTTTTTGAAGGCACCTCCGGAATTGATGCTAAAAACA CTTTATGTGAATTTACAGGAGATATCTTAAGAACTCCAGTGTCTGAAGATATGTTGGGTCGT GTGTTTAATGGATCTGGAAAGCCTATCGATAAAGGGCCGCCAATCTTAGCTGAAGATTTTCT TGACATTCAAGGTCAACCTATAAATCCTTGGTCTCGTATCTATCCAGAAGAAATGATCCAGA CTGGTATTTCTGCGATTGATGTGATGAATTCCATTGCCAGAGGACAAAAGATTCCAATTTTCT CTGCAGCTGGTTTACCCCACAATGAAATCGCTGCTCAAATCTGTAGACAAGCTGGTCTTGTC AAAATCCCAGGGAAATCTGTCTTAGATGATCATGAAGACAACTTTGCTATCGTTTTCGCCGC TATGGGTGTCAATATGGAAACAGCCAGATTCTTCAAGCAAGATTTTGAAGAGAATGGCTCTA TGGAAAATGTGTGCCTATTTTTGAACTTGGCCAATGATCCTACCATTGAAAGAATTATAACAC CCCGTTTGACTTTAACAGCGGCTGAATTTATGGCATATCAATGTGAGAAGCATGTGTTAGTC ATATTGACTGACATGTCATCTTATGCTGAGGCTTTGCGTGAGGTATCTGCTGCT -
TABLE 2-AG Target Primer Forward Primer Reverse cDNA Sequence (sense strand) ID 5′ → 3′ 5′ → 3′ 5′ → 3′ AG001 SEQ ID NO: 611 SEQ ID NO: 612 SEQ ID NO: 601 CATTTGAAGCG CGCTTGTCCC CATTTGAAGCGTTTTGCTGCCCCCAAAGCATGGATGTTGGACAAATTGGGGGGTGTGTTCGCCC TTTWRMYGCYCC GCTCCTCNGC CCAGGCCCTCCACCGGGCCACACAAGCTCAGGGAGTCCCTTCCATTAGTGATTTTCTTGCGTAA RAT CAGGTTGAAGTACGCCCTGACAAACTGTGAGGTGACCAAGATCGTTATGCAGAGACTTATTAAG GTCGACGGCAAAGTCAGGACTGATCCTAACTATCCTGCTGGATTCATGGATGTGATCACCATTGA AAAAACTGGTGAATTCTTCCGTTTGATCTATGATGTTAAGGGAAGATTCACTATTCACAGGATCAC TGCTGAAGAAGCAAAATACAAATTGTGCAAAGTCCGCAAGGTGCAAACCGGACCAAAAGGTATTC CATTCTTGGTCACCCACGATGGTAGGACCATTAGGTACCCTGACCCAATGATCAAGGTAAACGAC ACCATCCAACTGGAAATCGCCACCTCAAAGATCCTGGACTTTATCAAATTCGAATCCGGCAACTT GTGCATGATCACCGGAGGCAGGAATTTGGGTAGAGTGGGAACGGTAGTGAACAGGGAAAGGCA TCCGGGATCATTCGATATTGTCCACATTAGGGACGCTAATGATCACGTGTTCGCCACTAGATTAA ACAACGTATTCGTCATCGGTAAAGGAAGCAAAGCTTTCGTGTCTCTGCCAAGGGGCAAGGGAGT GAAACTGTCCATCGCTG AG005 SEQ ID NO: 613 SEQ ID NO: 614 SEQ ID NO: 603 GGTCTGGTTGG TCCTGCTTCTT GGTCTGGTTGGATCCAAATGAAATCAATGAGATTGCCAACACCAACTCGAGGCAAAACATCCGTA ATCCHAATGAA SGYRGCRATW AATTGATCAAGGATGGTTTGATCATTAAGAAACCGGTGGCAGTGCACTCTAGGGCTCGTGTCCGT ATCAAYGA CGYTC AAAAACACAGAAGCTCGCAGGAAGGGAAGGCACTGCGGTTTCGGTAAGAGGAAAGGTACAGCG AACGCTCGTATGCCTCAAAAGGAACTATGGATCCAAAGGATGCGTGTCTTGAGGCGTCTCCTGA AAAAATACAGGGAAGCCAAAAAGATCGACAGGCATCTGTACCACGCCCTGTACATGAAGGCCAA GGGTAACGTGTTCAAGAACAAGAGAGTGTTGATGGAATACATCCACAAGAAGAAGGCTGAGAAG GCCCGTGCCAAGATGTTGGCCGACCAAGCTAACGCCAGAAGGCAAAAGGTGAAACAAGTCCCG TGAGAGGAGGGAAGAGCGTATCGCCGCGAAGAAGCAGGA AG010 SEQ ID NO: 615 SEQ ID NO: 616 SEQ ID NO: 605 CTGGCGGCCA CGCCATTGGG CTGGCGGCCACATGCTTATGGGAGACTCTTTCAATTCGTCGTTGTTCAAACAAACTTTCCAAAGG CATGSTBATGG CRATGGTYTCK GTGTTCGCGAAGGACCAGAATGGACATTTGAAGATGGCTTTCAACGGTACTTTGGAGGTGAAGT CC GCTCTAGGGAATTAAAAGTTCAAGGCGGTATTGGCTCATGCGTGTCGCTAAATGTAAAAAGTCCT TTGGTAGCGGACACGGAAATAGGCATGGGAAACACCGTGCAATGGAAGATGTGCACCTTCAACC CTAGCACGACGATGGCGCTGTTTTTCGAGGTGGTCAATCAGCATTCGGCCCCCATTCCTCAAGG TGGTAGAGGATGTATACAGTTTATTACACAATATCAGCACTCGAGTGGCCAAAGGAGGATAAGGG TGACGACGATAGCGAGAAATTGGGCGGACGCATCGGCGAATATTCACCACATCAGCGCGGGTTT CGATCAGGAACGTGCCGCGGTGATTATGGCCCGGATGGCTGTTTATAGAGCGGAGACCGATGA GAGTCCCGATGTTTTAAGATGGGTCGATCGGATGCTGATTCGTTTGTGTCAAAAGTTTGGAGAAT ATAACAAAGATGACCAGGCATCCTTCAGATTAGGAGAAAATTTTAGCTTATACCCGCAATTCATGT ACCACTTAAGGCGATCCCAGTTTTTGCAAGTGTTCAACAATTCACCTGACGAAACGTCGTTTTACA GGCATATGCTTATGAGGGAAGATTTGACACAGTCCCTGATAATGATTCAGCCGATCTTGTACAGT TACAGTTTTAATGGTCCTCCGGAGCCCGTTTTGTTGGACACCAGCTCAATACAACCGGACAGAAT TCTGCTTATGGACACGTTTTTCCAGATATTGATTTTCCATGGAGAAACCATTGCCCAATGGCG AG014 SEQ ID NO: 617 SEQ ID NO: 618 SEQ ID NO: 607 CGCAGATCAAR GAACTTGCGG CGCAGATCAAGCATATGATGGCCTTCATTGAGCAAGAGGCTAATGAAAAGGCCGAGGAAATTGA CAYATGATGGC TTGABGTTSCG TGCCAAGGCGGAAGAAGAATTTAACATTGAAAAGGGCCGCCTTGTGCAACAACAAAGATTGAAG DCC ATCATGGAATACTATGAGAAGAAGGAGAAGCAAGTCGAACTACAAAAGAAAATTCAATCCTCCAA CATGCTGAACCAAGCCCGTCTTAAGGTTCTGAAAGTCCGCGAAGATCATGTTAGAGCTGTATTGG ATGAGGCTCGCAAGAAGCTTGGTGAAGTCACCAGGGATCAAGGCAAATATGCCCAGATTCTGGA ATCTTTGATCCTTCAGGGACTCTACCAGCTTTTCGAGGCAAACGTGACCGTACGCGTCCGCCCA CAAGACAGAACCTTAGTCCAATCAGTGCTGCCAACCATCGCAACCAAATACCGTGACGTCACCG GCCGAGATGTACACCTGTCCATCGATGACGAAACTCAACTGTCCGAATCCGTAACCGGCGGAAT CGAACTTTTGTGCAAACAAAACAAAATTAAGGTCTGCAACACCCTGGAGGCACGTTTGGACCTGA TTTCGCAACAGTTGGTTCCGCAAATCCGTAACGCCTTGTTCGGACGCAACATCAACCGCAAGTTC AG016 SEQ ID NO: 619 SEQ ID NO: 620 SEQ ID NO: 609 GTGTCGGAGG GGAATAGGAT GTGTCGGAGGATATGTTGGGCCGAGTGTTCAACGGATCAGGAAAACCCATTGACAAAGGTCCTC ATATGYTGGGY GGGTRATRTC CAATCTTAGCCGAAGATTTCTTGGACATCCAAGGTCAACCCATCAACCCATGGTCGCGTATCTAC CG GTCG CCGGAAGAAATGATCCAGACCGGTATCTCCGCCATCGACGTGATGAACTCCATCGCGCGTGGG CAAAAAATCCCCATTTTCTCCGCGGCCGGTTTACCGCACAACGAAATCGCCGCCCAAATCTGTAG ACAGGCCGGTTTAGTCAAACTGCCGGGCAAATCGGTAATCGACGATCACGAGGACAATTTCGCC ATCGTGTTCGCCGCCATGGGTGTCAACATGGAAACCGCCCGTTTCTTCAAGCAGGACTTCGAAG AAAACGGTTCCATGGAGAACGTGTGTCTCTTCTTGAATTTGGCCAACGATCCCACCATCGAGAGA ATCATCACGCCCCGTTTGGCTCTGACCGCCGCCGAATTTTTGGCTTATCAATGCGAGAAACACGT GCTGGTTATCTTAACTGATATGTCTTCTTACGCCGAGGCTTTGCGTGAAGTATCCGCCGCCAGAG AAGAAGTACCCGGACGTCGTGGGTTCCCCGGTTACATGTACACCGATTTGGCCACCATTTACGA AAGAGCCGGTCGCGTTGAGGGTAGAAACGGTTCCATCACCCAGATTCCCATCTTGACTATGCCG AACGACGACATCACCCATCCTATTCC -
TABLE 2-TC Primer Forward Primer Reverse cDNA Sequence (sense strand) Target ID 5′ → 3′ 5′ → 3′ 5′ → 3′ TC001 SEQ ID NO: 803 SEQ ID NO: 804 SEQ ID NO: 793 GGCCCCAAGA CGCTTGTCCC GGCCCCAAGAAGCATTTGAAGCGTCTCAATGCGCCCAAAGCATGGATGTTGGATAAACTG AGCATTTGAAG GCTCCTCNGC GGGGGTGTGTTTGCCCCTCGGCCTTCCACCGGCCCCCACAAGCTACGGGAGTCGCTACC CG RAT TTTGGTTATCTTCCTGCGAAACAGGCTGAAGTATGCCTTGACCAACTCAGAAGTGACGAA GATTGTTATGCAAAGATTGATTAAAGTTGACGGAAAAGTTAGGACAGACCCCAACTACCCC GCGGGTTTCATGGATGTTGTGACTATTGAGAAAACTGGGGAATTCTTCCGCTTGATTTATG ATGTTAAGGGAAGGTTCACAATCCATCGCATTACTGGAGAAGAGGCCAAATATAAATTGTG CAAAGTGAAGAAAGTACAGACAGGCCCCAAGGGCATTCCCTTCTTGGTGACCCGCGACG GACGCACTATCAGATACCCAGACCCCATGATCAAAGTGAATGACACCATTCAATTGGAGAT TGCCACTTCGAAAATTCTTGATTTTATCAAATTTGAGTCCGGTAATTTGTGTATGATTACTG GAGGTCGTAACTTGGGGCGTGTCGGTACAGTGGTGAGCCGAGAACGTCACCCAGGTTCC TTCGACATCGTTCATATTAAGGATGCAAATGGGCACACC TC002 SEQ ID NO: 805 SEQ ID NO: 806 SEQ ID NO: 795 CAGGAGTTCCT GCAATGTCATC CAGGAGTTCCTGGAGGCTAAAATCGACCAAGAGATCCTCACAGCGAAGAAAAACGCGTC GGARRMBAAR CATCAKRTCRT GAAAAACAAACGAGCGGCCATCCAGGCCATCAAGAGGAAGAAACGCTACGAAAAGCAGC ATMGA GTAC TCCAGCAGATCGATGGCACCCTCAGCACCATCGAGATGCAGCGGGAGGCCCTCGAGGG GGCCAACACCAACACAGCCGTACTCAAAACGATGAAAAACGCAGCGGACGCCCTCAAAAA TGCCCACCTCAACATGGATGTTGATGAGGTACATGACATGATGGATGACATTGC TC010 SEQ ID NO: 807 SEQ ID NO: 808 SEQ ID NO: 797 GCATTCTGCGC TGCCGGAAGT AAAATTCGGCGAATACAACAAAGACGACCCTAACAGTTTCCGTTTGAGTGAAAACTTCAGT TGGGTCGATCG TCTCRTAYTCK CTCTATCCCCAATTCATGTACCATTTGCGCCGCTCCCAATTCCTCCAAGTTTTCAACAACT GGC CCCCAGACGAGACCTCGTTCTACCGCCACATGCTGATGCGGGAGGACCTCACCCAAAGT CTCATTATGATCCAGCCGATTTTGTACAGTTATAGTTTCAACGGCCCCCCTGAACCCGTCC TCCTCGACACTAGTTCCATTCAACCCGATCGGATCCTTCTCATGGACACATTTTTCCAAATT TTGATTTTCCACGGTGAGACAATCGCCCAATGGAGGAACCTCAAGTACCAGGACATGCCC GAATACGAGAACTTCCGGCA TC014 SEQ ID NO: 809 SEQ ID NO: 810 SEQ ID NO: 799 GAGAAAGCCG GAACTTGCGG GAGAAAGCCGAAGAAATCGATGCGAAAGCTGAGGAGGAGTTTAACATTGAAAAAGGGCG ARGARATYGAT TTGABGTTSCG CCTGGTCCAACAACAGCGCTTGAAGATCATGGAATATTACGAGAAGAAGGAGAAACCGGT GC DCC GGAATTGCAGAAGAAAATTCAGTCGTCAAACATGCTGAACCAAGCCCGTTTGAAAGTATTA AAAGTGCGTGAAGACCACGTCCACAATGTGCTGGATGACGCCCGCAAACGTCTGGGCGA AATCACCAATGACCAGGCGAGATATTCACAACTTTTGGAGTCTCTTATCCTCCAGAGTCTC TACCAGTACTTGGGAATCAGTGATGAGTTGTTTGAGAACAATATAGTGGTGAGAGTCAGG CAACAGGACAGGAGTATAATCCAGGGCATTCTCCCAGTTGTTGCGACGAAATACAGGGAC GCCACTGGTAAAGACGTTCATCTTAAAATCGACGATGAGAGCCACTTGCCATCCGAAACC ACCGGAGGAGTGGTTTTGTATGCGCAAAAGGGTAAAATCAAGATTGACAACACCTTGGAG GCTCGTTTGGATTTAATTGCACAGCAACTTGTGCCAGAAATTCGTACGGCCTTGTTTGGAC GCAACATCAACCGCAAGTTC TC015 SEQ ID NO: 811 SEQ ID NO: 812 SEQ ID NO: 801 GGATGAACTAC CGATCAAAGC GGATGAACTACAGCTGTTCCGTGGCGATACAGTGTTGCTGAAAGGGAAGCGGCGGAAAG AGCTBTTCCGH GWCCRAAVCG AGACCGTCTGCATTGTGCTGGCCGACGAAAACTGCCCCGATGAGAAGATCCGGATGAAC GG ACG AGGATCGTCAGGAATAATCTACGGGTTAGGCTCTCTGACGTCGTCTGGATCCAGCCCTGT CCCGACGTCAAATACGGGAAGAGGATCCACGTTTTGCCCATCGATGACACGGTCGAAGG GCTCGTCGGAAATCTCTTCGAGGTGTACTTAAAACCATACTTCCTCGAAGCTTATCGACCA ATCCACAAAGGCGACGTTTTCATCGTCCGTGGTGGCATGCGAGCCGTTGAATTCAAAGTG GTGGAAACGGAACCGTCACCATATTGTATCGTCGCCCCCGATACCGTCATCCATTGTGAC GGCGATCCGATCAAACGAGAAGAAGAGGAGGAAGCCTTGAACGCCGTCGGCTACGACGA TATCGGCGGTTGTCGCAAACAACTCGCACAAATCAAAGAAATGGTCGAATTACCTCTACG CCACCCGTCGCTCTTCAAGGCCATTGGCGTGAAACCACCACGTGGTATCCTCTTGTACGG ACCTCCAGGTACCGGTAAAACTTTAATCGCACGTGCAGTGGCCAACGAAACCGGTGCTTT CTTCTTCTTAATCAACGGTCCCGAAATTATGAGTAAATTAGCCGGCGAATCCGAAAGTAAT CTAAGGAAAGCGTTCGAAGAAGCCGATAAAAACTCACCGGCTATTATTTTCATCGATGAAT TGGACGCGATTGCACCGAAACGTGAAAAAACCCACGGCGAAGTCGAACGCCGAATTGTC TCGCAATTGTTAACACTGATGGACGGCATGAAGAAAAGCTCGCATGTTATCGTGATGGCG GCCACAAATCGCCCGAACTCAATCGATCCGGCTTTGCGTCGGTTCGGTCGCTTTGATCG -
TABLE 2-MP Target Primer Forward Primer Reverse cDNA Sequence (sense strand) ID 5′ → 3′ 5′ → 3′ 5′ → 3′ MP001 SEQ ID NO: 898 SEQ ID NO: 899 SEQ ID NO: 888 GGCCCCAAGAA CGCTTGTCCC GGCCCCAAGAAGCATTTGAAGCGTTTAAACGCACCCAAAGCATGGATGTTGGACAAATCGGG GCATTTGAAGCG GCTCCTCNGC GGGTGTCTTCGCTCCACGTCCAAGCACCGGTCCACACAAACTTCGTGAATCACTACCGTTATT RAT GATCTTCTTGCGTAATCGTTTGAAGTATGCACTTACTGGTGCCGAAGTCACCAAGATTGTCAT GCAAAGATTAATCAAGGTTGATGGCAAAGTCCGTACCGACCCTAATTATCCAGCCGGTTTTAT GGATGTTATATCTATCCAAAAGACCAGTGAGCACTTTAGATTGATCTATGATGTGAAAGGTCG TTTCACCATCCACAGAATTACTCCTGAAGAAGCAAAATACAAGTTGTGTAAAGTAAAGAGGGT ACAAACTGGACCCAAAGGTGTGCCATTTTTAACTACTCATGATGGCCGTACTATTCGCTACCC TGACCCTAACATCAAGGTTAATGACACTATTAGATACGATATTGCATCATCTAAAATTTTGGAT CATATCCGTTTTGAAACTGGAAACTTGTGCATGATAACTGGAGGTCGCAATTTAGGGCGTGTT GGTATTGTTACCAACAGGGAAAGACATCCAGGATCTTTTGATATTGTTCACATTAAGGATGCA AATGAACATATTTTTGCTACCCGGATGAACAATGTTTTTATTATTGGAAAAGGTCAAAAGAACT ACATTTCTCTACCAAGGAGTAAGGGAGTTAAATTGACTAT MP002 SEQ ID NO: 900 SEQ ID NO: 901 SEQ ID NO: 890 GAGTTTCTTTA GCAATGTCATC GAGTTTCTTTAGTAAAGTATTCGGTGGCAAAAAGGAAGAGAAGGGACCATCAACCGAAGATG GTAAAGTATTC CATCAKRTCRT CGATACAAAAGCTTCGATCCACTGAAGAGATGCTGATAAAGAAACAAGAATTTTTAGAAAAAA GGTGG GTAC AAATTGAACAAGAAGTAGCGATAGCCAAAAAAAATGGTACAACTAATAAACGAGCTGCATTGC AAGCATTGAAGCGTAAGAAACGGTACGAACAACAATTAGCCCAAATTGATGGTACCATGTTAA CTATTGAACAACAGCGGGAGGCATTAGAAGGTGCCAACACAAATACAGCAGTATTGACTACC ATGAAAACTGCAGCAGATGCACTTAAATCAGCTCATCAAAACATGAATGTAGATGATGTACAT GATCTGATGGATGACATTGC MP010 SEQ ID NO: 902 SEQ ID NO: 903 SEQ ID NO: 892 GTGGCTGCATA CGCGGCTGCT GTGGCTGCATACAGTTCATTACGCAGTATCAACATTCCAGTGGCTATAAACGAATTAGAGTCA CAGTTCATTAC CCATGAAYASY CCACATTAGCTAGGAATTGGGCAGACCCTGTTCAGAATATGATGCATGTTAGTGCTGCATTTG GCAG TG ATCAAGAAGCATCTGCCGTTTTAATGGCTCGTATGGTAGTGAACCGTGCTGAAACTGAGGATA GTCCAGATGTGATGCGTTGGGCTGATCGTACGCTTATACGCTTGTGTCAAAAATTTGGTGATT ATCAAAAAGATGATCCAAATAGTTTCCGATTGCCAGAAAACTTCAGTTTATATCCACAGTTCAT GTATCATTTAAGAAGGTCTCAATTTCTACAAGTTTTTAATAATAGTCCTGATGAAACATCATATT ATAGGCACATGTTGATGCGTGAAGATGTTACCCAAAGTTTAATCATGATACAGCCAATTCTGT ATAGCTATAGTTTTAATGGTAGGCCAGAACCTGTACTTTTGGATACCAGTAGTATTCAACCTGA TAAAATATTATTGATGGACACATTTTTCCATATTTTGATATTCCATGGAGAGACTATTGCTCAAT GGAGAGCAATGGATTATCAAAATAGACCAGAGTATAGTAACCTCAAGCAGTTGCTTCAAGCCC CCGTTGATGATGCTCAGGAAATTCTCAAAACTCGATTCCCAATGCCTCGGTATATTGACACAG AACAAGGTGGTAGTCAGGCAAGATTTTTACTATGCAAAGTAAACCCATCTCAAACACATAATAA TATGTATGCTTATGGAGGGTGATGGTGGAGCACCAGTTTTGACAGATGATGTAAGCTTGCAG CTGTTCATGGAGCAGCCGCG MP016 SEQ ID NO: 904 SEQ ID NO: 905 SEQ ID NO: 894 GTGTCGGAGG GGAATAGGAT GTGTCGGAGGATATGTTGGGCCGCGTTTTCAATGGCAGTGGAAAGCCGATAGATAAAGGACC ATATGYTGGGY GGGTRATRTC TCCTATTTTGGCTGAAGATTATTTGGATATTGAAGGCCAACCTATTAATCCATACTCCAGAACA CG GTCG TATCCTCAAGAAATGATTCAAACTGGTATTTCAGCTATTGATATCATGAACTCTATTGCTCGTG GACAAAAAATTCCAATATTTTCAGCTGCAGGTTTACCACATAATGAGATTGCTGCTCAAATTTG TAGACAAGCTGGTCTCGTTAAAAAACCTGGTAAATCAGTTCTTGACGATCATGAAGACAATTTT GCTATAGTATTTGCTGCTATGGGTGTTAATATGGAAACAGCCAGATTCTTTAAACAAGATTTTG AGGAAAATGGTTCAATGGAGAATGTTTGTTTGTTCTTGAATTTAGCTAATGATCCTACTATTGA GCGTATCATTACACCACGTCTTGCTTTAACTGCTGCTGAATTTTTAGCTTACCAATGTGAAAAG CATGTCTTAGTTATTTTAACTGACATGAGTTCATATGCTGAAGCTTTAAGAGAAGTTTCTGCTG CTCGTGAAGAAGTACCTGGGCGTCGTGGTTTCCCTGGTTACATGTACACCGATTTAGCTACAA TTTATGAACGTGCTGGGCGTGTAGAAGGAAGAAATGGTTCTATCACACAAATACCTATTTTAA CTATGCCTAACGACGACATCACCCATCCTATTCC MP027 SEQ ID NO: 906 SEQ ID NO: 907 SEQ ID NO: 896 CGCCGATTACC GGGATACTGT CGCCGATTACCAAAACAAGACGTGTGTTCAGACATTAGAAGGCCATGCTCAAAATATTTCTGC AAAACAARACB CACAAYYTCDC TCGTTTGTTTCCATCCAGAACTTCCCATCGTGTTAACTGGCTCAGAAGATGGTACCGTCAGAA TG CRCC TTTGGCATTCTGGTACTTATCGATTAGAATCATCATTAAACTATGGGTTAGAACGTGTATGGAC AATCTGTTGCTTACGGGGATCTAATAATGTAGCTCTAGGTTATGATGAAGGAAGTATAATGGT TAAAGTTGGTCGTGAAGAGCCAGCAATGTCAATGGATGTTCATGGGGGTAAAATTGTTTGGG CACGTCATAGTGAAATTCAACAAGCTAACCTTAAAGCGATGCTTCAAGCAGAAGGAGCCGAAA TCAAAGATGGTGAACGTTTACCAATACAAGTTAAAGACATGGGTAGCTGTGAAATTTATCCAC AGTCAATATCTCATAATCCGAATGGTAGATTTTTAGTAGTATGTGGTGATGGAGAGTATATTAT ATATACATCAATGGCTTTGCGTAATAAAGCATTTGGCTCCGCTCAGGATTTTGTATGGTCTTCT GATTCTGAGTATGCCATTAGAGAAAATTCTTCTACAATCAAAGTTTTTAAAAATTTTAAAGAAAA AAAGTCTTTTAAACCAGAAGGTGGAGCAGATGGTATTTTTGGAGGTTATTTGTTAGGTGTGAA ATCTGTTACTGGGTTGGCTTTATATGATTGGGAAAATGGTAACTTAGTTCGAAGAATTGAGAC ACAACCTAAACATGTATTTTGGTCAGAGTCTGGAGAATTAGTATGTCTTGCCACAGATGAAGC ATACTTTATTTTACGTTTTGACGTCAATGTACTTAGTGCTGCAAGAGCATCCAATTATGAAGCT GCTAGTCCTGATGGTCTTGAAGATGCCTTTGAGATTTTAGGAGAAGTTCAAGAAGTTGTAAAA ACTGGTCTATGGGTTGGTGATTGCTTTATTTACACCAATGGAGTAAATCGTATCAACTATTATG TTGGTGGTGAAGTTGTGACAGTATCCC -
TABLE 2-NL Primer Forward Primer Reverse cDNA Sequence (sense strand) Target ID 5′ → 3′ 5′ → 3′ 5′ → 3′ NL001 SEQ ID NO: 1117 SEQ ID NO: 1118 SEQ ID NO: 1071 GAAATCATGGAT ACTGAGCTTCACAC GAAATCATGGATGTTGGACAAATTGGGTGGTGTGTATGCACCCCGACCCAGCACAGG GTTGGACAAATT CCTTGCCC TCCACACAAGCTGCGAGAATCTCTCCCACTTGTCATATTTTTGCGTAATCGGCTCAAG GG TACGCTTTAACTAACTGTGAAGTGAAGAAAATTGTGATGCAGCGTCTCATCAAGGTTG ACGGCAAAGTGAGGACTGACCCCAACTATCCTGCAGGTTTTATGGACGTTGTTCAAAT CGAAAAGACAAACGAGTTCTTCCGTTTGATCTATGATGTTAAGGGACGTTTCACCATC CACAGGATCACAGCTGAAGAAGCTAAGTACAAGCTGTGCAAAGTGAAGAGGGTTCAG ACAGGACCCAAGGGCATTCCATTTTTGACCACTCACGATGGACGCACCATCAGGTAT CCAGACCCCTTGGTAAAAGTCAATGACACCATCCAATTGGACATTGCCACATCCAAAA TCATGGACTTCATCAGATTCGACTCTGGTAACCTGTGTATGATCACTGGAGGTCGTAA CTTGGGTCGTGTGGGCACTGTCGTGAACAGGGAGCGACACCCGGGGTCTTTCGACA TCGTGCACATCAAGGACGTGTTGGGACACACTTTTGCCACTAGGTTGAACAACGTTTT CATCATCGGCAAGGGTAGTAAAGCATACGTGTCTCTGCCCAAGGGCAAGGGTGTGAA GCTCAGT NL002 SEQ ID NO: 1119 SEQ ID NO: 1120 SEQ ID NO: 1073 GATGAAAAGGG CTGATCCACATCCA GATGAAAAGGGCCCTACAACTGGCGAAGCCATTCAGAAACTACGCGAAACAGAGGAA CCCTACAACTG TGTGTTGATGAG ATGCTGATAAAGAAACAAGACTTTTTAGAAAAGAAAATTGAAGTTGAAATTGGAGTTGC GC CAGGAAGAATGGAACAAAAAACAAAAGAGCCGCGATCCAGGCACTCAAAAGGAAGAA GAGGTATGAAAAGCAATTGCAGCAGATCGATGGAACGTTATCAACAATTGAGATGCA GAGAGAGGCCCTCGAAGGAGCCAACACGAATACGGCCGTACTGCAAACTATGAAGA ACGCAGCAGATGCTCTCAAAGCGGCTCATCAACACATGGATGTGGATCAG NL003 SEQ ID NO: 1121 SEQ ID NO: 1122 SEQ ID NO: 1075 TCCGCGTCGTC TTGACGCGACCAG TCCGCGTCGTCCTTACGAGAAGGCACGTCTCGAACAGGAGTTGAAGATCATCGGAGA CTTACGAGAAG GTCGGCCAC GTATGGACTCCGTAACAAGCGTGAGGTGTGGAGAGTCAAATACGCCCTGGCCAAGAT GC TCGTAAGGCCGCTCGTGAGCTGTTGACTCTGGAAGAGAAGGACCAGAAACGTTTGTT TGAAGGTAACGCCCTGCTGCGTCGCCTGGTGCGTATTGGAGTGTTGGACGAAGGAA GAATGAAGCTCGATTACGTCTTGGGTTTAAAAATTGAAGATTTCCTTGAACGTCGTCT ACAGACTCAGGTGTACAAACTCGGTTTGGCCAAGTCCATCCATCACGCCCGTGTACT CATCAGACAAAGACATATCAGAGTGCGCAAACAAGTAGTGAACATTCCGAGCTTTGTG GTGCGCCTGGACTCGCAGAAGCACATTGACTTCTCGCTGAAGTCGCCGTTCGGCGG TGGCCGACCTGGTCGCGTCAA NL004 SEQ ID NO: 1123 SEQ ID NO: 1124 SEQ ID NO: 1077 TGAAGGTGGAG GTCGTCTTCTCDGA AAGGAGTTGGCTGCTGTAAGAACTGTCTGCTCTCACATCGAAAACATGCTGAAGGGA AARGGTTYGGM HACRTAVAGACC GTCACAAAGGGATTCCTGTACAAGATGCGTGCCGTGTACGCCCATTTCCCCATCAAC WCMAAG TGTGTGACGACCGAGAACAACTCTGTGATCGAGGTGCGTAACTTCCTGGGCGAGAAG TACATCCGACGGGTGAGGATGGCGCCCGGCGTCACTGTTACCAACTCGACAAAGCA GAAGGACGAGCTCATCGTCGAAGGAAACAGCATAGAGGACGTGTCAAGATCAGCTG CCCTCATCCAACAGTCAACAACAGTGAAGAACAAGGATATTCGTAAATTCTTGGAC NL005 SEQ ID NO: 1125 SEQ ID NO: 1126 SEQ ID NO: 1079 GGTCTGGTTGG TCCTGCTTCTTSGY TTGGATCCCAATGAAATAAATGAAATCGCAAACACAAATTCACGTCAAAGCATCAGGA ATCCHAATGAAA RGCRATWCGYTC AGCTGATCAAAGACGGTCTTATCATCAAGAAACCGGTTGCAGTACATTCACGTGCTCG TCAAYGA CGTTCGTAAAAACACTGAAGCCAGGAGGAAAGGCAGACATTGTGGCTTTGGTAAGAG GAAAGGTACAGCCAACGCCCGTATGCCACAAAAGGTTCTATGGGTGAATCGTATGCG TGTCTTGAGAAGACTGTTGAAAAAATACAGACAAGATAAGAAAATCGACAGGCATCTG TACCATCACCTTTACATGAAGGCTAAGGGTAACGTATTCAAGAACAAGCGTGTATTGA TGGAGTTCATTCATAAGAAGAAGGCCGAGAAAGCAAGAATGAAGATGTTGAACGACC AGGCTGAAGCTCGCAGACAAAAGGTCAAGGAGGCCAAGAAGCGAAGGGAA NL006 SEQ ID NO: 1127 SEQ ID NO: 1128 SEQ ID NO: 1081 GGAGCGAGACT GAGATCTTCTGCAC AAGTGCTTGTGTCAAGTGGTGTGGTGGAGTACATTGACACCCTGGAGGAGGAGACG ACAACAAYKAYR RTTKACVGCATC ACCATGATAGCGATGTCGCCGGATGACCTGCGTCAGGACAAGGAGTATGCCTACTGT GYTGGC ACCACCTACACGCACTGCGAGATCCACCCGGCCATGATACTCGGTGTGTGCGCCTCT ATTATTCCCTTCCCCGATCACAACCAAAGTCCCAGGAACACCTATCAGAGCGCTATGG GGAAACAGGCGATGGGCGTGTACATCACCAACTTCCACGTGCGAATGGACACGCTG GCTCACGTGCTGTTCTACCCGCACAAGCCACTGGTCACCACTCGCTCCATGGAGTAC CTGCGCTTCAGGGAGCTTCCTGCCGGCATCAACTCTGTGGTCGCCATCGCCTGCTAC ACTGGATACAACCAGGAGGACAGTGTCATTCTCAACGCCTCCGCTGTCGAGCGCGG ATTCTTCAGATCGGTTTTCTTCCGATCTTACAAAGATGCAGAATCGAAGCGTATTGGC GACCAAGAGGAGCAATTCGAGAAGCCCACCAGACAGACGTGTCAGGGAATGAGGAA TGCCATTTATGACAAATTGGACGATGATGGCATCATTGCTCCCGGTCTGAGAGTGTCT GGTGACGATGTGGTTATTGGCAAAACCATAACACTGCCCGATAATGATGACGAGCTG GAAGGTACAACAAAGAGGTTCACGAAGAGAGATGCCAGTACTTTCCTGCGTAACAGT GAGACGGGAATCGTCGACCAAGTCATGTTAACCTTGAACTCTGAGGGTTACAAGTTC TGCAAAATTCGAGTCAGGTCTGTGCGTATCCCGCAGATTGGCGATAAGTTCGCTTCC CGACATGGCCAAAAAGGAACGTGTGGAATACAGTATCGTCAAGAGGACATGCCTTTT ACAAGCGAGGGAATCGCACCGGATATTATTATCAATCCTCACGCTATCCCATCTCGTA TGACAATTGGCCATTTAATTGAATGTCTCCAAGGAAAGGTGTCGTCGAACAAGGGCG AGATAGGTGACGCGACGCCGTTCAAC NL007 SEQ ID NO: 1129 SEQ ID NO: 1130 SEQ ID NO: 1083 CGGTGTCCATTC CGATGCAAGTAGG TTTCAGAGATTTCCTTCTGAAACCTGAAATTTTGAGAGCAATCCTTGACTGTGGTTTTG ACAGYTCCGG TGTCKGARTCYTC AACATCCATCTGAAGTACAACATGAATGCATTCCTCAAGCTGTACTTGGAATGGACAT ATTGTGTCAAGCGAAATCCGGTATGGGAAAAACTGCTGTATTTGTGTTGGCGACATTA CAGCAAATTGAACCAACTGACAACCAAGTCAGTGTATTGGTCATGTGTCATACCAGAG AGCTTGCATTCCAAATCAGCAAAGAGTATGAACGATTTTCGAAATGTATGCCAAATAT CAAGGTTGGAGTTTTCTTCGGCGGACTGCCGATTCAGAGGGATGAGGAGACGTTGAA ATTGAACTGTCCTCACATCGTGGTTGGAACACCCGGACGAATTTTGGCGTTGGTACG CAACAAGAAGCTGGACCTCAAGCATCTCAAGCACTTTGTCCTTGACGAATGTGACAAA ATGTTGGAACTGTTAGATATGCGAAGAGATGTGCAGGAAATATTCCGAAACACGCCG CACAGCAAACAAGTCATGATGTTCAGTGCAACTCTCAGCAAAGAAATTCGTCCAGTCT GCAAGAAATTCATGCAAGATCCGATGGAAGTGTACGTTGATGACGAGGCCAAGCTGA CGCTTCACGGCCTGCAGCAGCACTATGTCAAACTCAAAGAAAACGAAAAGAACAAAA AGTTATTTGAATTACTTGACATACTTGAATTCAACCAGGTTGTTATATTTGTGAAGTCA GTGCAGCGCTGCATGGCCCTATCGCAACTCCTAACAGAGCAGAACTTCCCTGCAGTG GCTATTCACCGTGGCATGACACAAGAAGAACGATTGAAGAAATATCAAGAGTTCAAAG AGTTCCTAAAGCGAATTTTGGTAGCAACGAATCTGTTTGGCAGAGGAATGGATATTGA GAGAGTCAACATTGTATTCAACTATGACATGCCT NL008 SEQ ID NO: 1131 SEQ ID NO: 1132 SEQ ID NO: 1085 GTGGTGGATCA GCGCATTTGATCGT GGAAGGATAGAAAACCAGAAACGAGTTGTTGGTGTTCTTTTGGGATGCTGGAGACCT CTTYAAYCGKATG TBGTYTTCAC GGAGGTGTATTAGATGTTTCAAACAGTTTTGCAGTTCCATTTGATGAGGACGACAAAG AAAAGAATGTTTGGTTCTTAGACCATGATTACTTGGAAAACATGTTCGGGATGTTCAA GAAAGTTAATGCTAGAGAAAAGGTTGTGGGTTGGTACCATACTGGACCCAAACTCCA CCAAAACGATGTTGCAATCAATGAGTTGATTCGTCGTTACTGTCCAAACTGTGTCTTA GTCATAATCGATGCCAAGCCTAAAGATTTGGGTCTACCTACAGAGGCATACAGAGTC GTTGAAGAAATCCATGATGATGGATCGCCAACATCAAAAACATTTGAACATGTGATGA GTGAGATTGGGGCAGAAGAGGCTGAGGAGATTGGCGTTGAACATCTGTTGAGAGAC ATCAAAGATACAACAGTCGGGTCACTGTCACAGCGCGTCACAAATCAGCTGATGGGC TTGAAGGGCTTGCATCTGCAATTACAGGATATGCGAGACTATTTGAATCAGGTTGTCG AAGGAAAGTTGCCAATGAACCATCAAATCGTTTACCAACTGCAAGACATCTTCAACCT TCTACCCGATATCGGCCACGGCAATTTTGTAGACTCGCTCTAC NL009 SEQ ID NO: 1133 SEQ ID NO: 1134 SEQ ID NO: 1087 GGGCCGTGGTC CCGCCAAAGGACT TGCGACTATGATCGACCGCCGGGACGCGGTCAGGTGTGCGACGTCGACGTCAAGAA AGAAYATYWAYA SARRTADCCCTC CTGGTTTCCCTGCACCTCTGAGAACAATTTCAACTACCATCAATCGAGCCCTTGTGTT AC TTTCTCAAACTGAACAAGATAATTGGTTGGCAACCGGAGTACTACAATGAGACTGAAG GCTTTCCAGATAATATGCCAGGTGACCTCAAGCGACACATTGCCCAACAGAAGAGTA TCAACAAGCTGTTTATGCAAACAATCTGGATAACTTGCGAAGGAGAGGGTCCTCTAGA CAAGGAGAATGCAGGGGAGATCCAGTACATCCCTAGACAGGGATTTCCGGGCTACTT CTACCCTTACACTAATGCC NL010 SEQ ID NO: 1135 SEQ ID NO: 1136 SEQ ID NO: 1089 (amino terminus) CGGCTGACGTG TGCCGGAAGTTCTC GTCCAGTCGACTGGAAGCCACCAGGCTTGTTGTTCCCGTTGGATGTCTGTATCAACC GAAYGTKTGGCC RTAYTCKGGC TTTGAAGGAGAGACCTGATCTACCGCCTGTACAGTACGATCCAGTTCTTTGTACTAGG AATACTTGTCGTGCAATTCTGAATCCATTGTGCCAAGTCGACTATCGAGCCAAGCTAT GGGTCTGCAACTTTTGTTTCCAGAGGAATCCTTTCCCCCCTCAATATGCAGCTATTTC GGAGCAGCATCAACCAGCAGAACTGATACCTTCATTTTCCACCATCGAATACATCATT ACCAGAGCGCAAACGATGCCGCCGATGTTCGTGCTGGTGGTGGACACATGTCTGGA CGACGAGGAGCTGGGAGCTTTGAAGGACTCACTGCAGATGTCGCTGTCGCTGCTGC CGCCCAATGCACTCATCGGTCTCATCACGTTCGGCAAAATGGTGCAGGTGCACGAGC TTGGCTGCGACGGCTGCTCGAAGAGCTACGTGTTCCGTGGCGTGAAGGACCTGACT GCCAAGCAGATCCAGGACATGTTGGGCATTGGCAAGATGGCCGCCGCTCCACAGCC CATGCAACAGCGCATTCCCGGCGCCGCTCCCTCCGCACCTGTCAACAGATTTCTTCA GCCTGTCGGAAAGTGCGATATGAGTTTAACTGATCTGCTTGGGGAATTGCAAAGAGA TCCATGGAATGTGGCTCAGGGCAAGAGACCTCTCCGATCTACTGGAGTTGCATTGTC CATTGCAGTTGGTCTGCTCGAGTGCACA SEQ ID NO: 1115 (carboxy terminus) CGTTGAACGTGAAAGGCTCGTGTGTGTCAGACACTGACATTGGCTTGGGCGGCACCT CTCAATGGAAAATGTGCGCCTTCACTCCACACACAACTTGTGCATTCTTCTTCGAAGT TGTCAACCAGCACGCAGCCCCAATCCCACAGGGAGGAAGAGGATGCATCCAATTCAT TACGCAATACCAACATTCCAGTGGCCAGAGAAGGATACGTGTCACCACCATCGCTCG AAACTGGGCAGATGCGAGCACCAACCTGGCACACATCAGTGCCGGCTTCGACCAGG AGGCAGGAGCCGTGCTGATGGCCCGCATGGTCGTGCATCGCGCCGAGACTGACGAT GGACCTGACGTCATGCGCTGGGCTGACCGCATGCTCATCCGTCTCTGTCAGAGGTTC GGTGAATACAGTAAGGATGACCCTAACAGTTTCCGTCTGCCAGAGAACTTCACACTTT ATCCGCAGTTCATGTACCATCTGCGTCGATCCCAATTCTTGCAAGTGTTCAACAACAG TCCTGATGAAACATCTTACTACAGGCACATTCTTATGCGAGAGGATCTGACTCAGAGT TTGATTATGATCCAGCCGATTTTGTACAGCTACAGCTTCAATGGTCCCCCCGAGCCAG TGCTGCTCGACACCAGCAGTATTCAACCCGACAGAATCCTATTGATGGACACATTTTT CCAAATTCTCATTTTCCATGGAGAGACGATTGCTCAATGGCGATCTCTGGGCTACCAG GACAT NL011 SEQ ID NO: 1137 SEQ ID NO: 1138 SEQ ID NO: 1091 CCCACTTTCAAG CGCTCTCTCTCGAT AGATGGTGGTACCGGCAAAACTACATTTGTCAAACGACATCTTACCGGAGAATTTGAA TGYGTRYTRGTC CTGYDSCTGCC AAGAAGTATGTTGCCACCCTTGGAGTTGAAGTTCACCCCCTTGTATTTCACACAAACA GG GAGGTGTGATTAGGTTCAATGTGTGGGACACAGCTGGCCAGGAAAAGTTCGGTGGA CTTCGTGATGGATATTACATTCAGGGACAATGCGCCATCATTATGTTTGACGTAACGT CAAGAGTCACCTACAAGAACGTTCCCAACTGGCACAGAGATTTAGTGAGGGTTTGCG AAAACATTCCCATTGTACTATGCGGCAACAAAGTAGACATCAAGGACAGGAAAGTCAA GGCCAAGAGCATAGTCTTCCATAGGAAGAAGAACCTTCAGTACTACGACATCAGTGC GAAAAGCAACTACAACTTCGAGAAGCCGTTCCTGTGGTTGGCAAAGAAGCTGATCGG TGACCCCAACCTGGAGTTCGTCGCCATGCCCGCCCTCCTCCCACCCGAGGTCACAAT GGACCCCCAAT NL012 SEQ ID NO: 1139 SEQ ID NO: 1140 SEQ ID NO: 1093 GCAGGCGCAGG GAATTTCCTCTTSA GCAGCAGACGCAGGCACAGGTAGACGAGGTTGTCGATATAATGAAAACAAACGTTGA TBGABGARGT GYTTBCCVGC GAAAGTATTGGAGAGGGATCAAAAACTATCAGAATTGGATGATCGAGCAGATGCTCTA CAGCAAGGCGCTTCACAGTTTGAACAGCAAGCTGGCAAACTCAAGAGGAAATTC NL013 SEQ ID NO: 1141 SEQ ID NO: 1142 SEQ ID NO: 1095 CAGATGCGCCC GCCCTTGACAGAYT CGCAGAGCAAGTCTACATCTCTTCACTGGCCTTATTGAAAATGCTTAAGCACGGTCGC GTBGTDGAYAC GDATVGGATC GCCGGTGTTCCCATGGAAGTTATGGGCCTAATGCTGGGCGAATTTGTAGACGACTAC ACTGTGCGTGTCATTGATGTATTCGCTATGCCACAGAGTGGAACGGGAGTGAGTGTG GAGGCTGTAGACCCGGTGTTCCAAGCGAAGATGTTGGACATGCTAAAGCAGACAGG ACGGCCCGAGATGGTGGTGGGCTGGTACCACTCGCACCCGGGCTTCGGCTGCTGG CTGTCGGGTGTCGACATCAACACGCAGGAGAGCTTCGAGCAACTATCCAAGAGAGC CGTTGCCGTCGTCGTC NL014 SEQ ID NO: 1143 SEQ ID NO: 1144 SEQ ID NO: 1097 CGCAGATCAAR GAACTTGCGGTTGA TTTCATTGAGCAAGAAGCCAATGAGAAAGCCGAAGAGATCGATGCCAAGGCCGAGGA CAYATGATGGC BGTTSCGDCC AGAATTCAACATTGAAAAGGGAAGGCTCGTACAGCACCAGCGCCTTAAAATCATGGA GTACTATGACAGGAAAGAGAAGCAGGTTGAGCTCCAGAAAAAAATCCAATCGTCAAA CATGCTGAACCAAGCGCGTCTGAAGGCACTGAAGGTGCGCGAAGATCACGTGAGAA GTGTGCTCGAAGAATCCAGAAAACGTCTTGGAGAAGTAACCAGAAACCCAGCCAAGT ACAAGGAAGTCCTCCAGTATCTAATTGTCCAAGGACTCCTGCAGCTGCTAGAATCAAA CGTAGTACTGCGCGTGCGCGAGGCTGACGTGAGTCTGATCGAGGGCATTGTTGGCT CATGCGCAGAGCAGTACGCGAAGATGACCGGCAAAGAGGTGGTGGTGAAGCTGGAC GCTGACAACTTCCTGGCCGCCGAGACGTGTGGAGGCGTCGAGTTGTTCGCCCGCAA CGGCCGCATCAAGATCCCCAACACCCTCGAGTCCAGGCTCGACCTCATCTCCCAGCA ACTTGTGCCCGAGATTAGAGTCGCGCTCTTT NL015 SEQ ID NO: 1145 SEQ ID NO: 1146 SEQ ID NO: 1099 GCCGCAAGGAG GTCCGTGGGAYTC ATTGTGCTGTCTGACGAGACATGTCCGTTCGAAAAGATCCGCATGAATCGAGTGGTC ACBGTVTGC RGCHGCAATC AGGAAGAATCTGCGAGTGCGCTTGTCCGACATTGTCTCGATCCAGCCTTGCCCAGAC GTCAAGTATGGAAAGCGTATCCATGTGCTGCCCATTGATGATACCGTTGAGGGTCTTA CAGGAAATCTGTTCGAAGTGTATTTGAAGCCATACTTCCTGGAAGCATACAGGCCAAT TCACAAGGATGATGCATTCATTGTTCGCGGAGGTATGAGAGCGGTCGAATTCAAGGT GGTTGAAACAGATCCATCGCCCTACTGCATTGTCGCGCCAGACACCGTCATCCATTG TGAGGGAGACCCCATCAAACGTGAGGATGAAGAAGACGCAGCAAACGCAGTCGGCT ACGACGACATTGGAGGCTGCAGAAAGCAGCTGGCGCAGATCAAAGAGATGGTGGAG TTGCCGCTGAGACATCCCAGTCTGTTCAAGGCGATCGGCGTGAAGCCGCCACGAGG CATCCTGCTGTACGGACCACCGGGAACCGGAAAGACGTTGATAGCGCGCGCCGTCG CCAACGAAACGGGCGCCTTCTTCTTCCTCATCAACGGACCCGAGATTATGAGCAAAT TGGCCGGCGAGTCGGAGAGTAACCTGCGCAAAGCTTTCGAGGAAGCGGACAAAAAC GCACCGGCCATCATCTTCATCGATGAGCTGGACGCAATCGCGCCAAAACGCGAGAA GACGCACGGCGAGGTGGAGCGACGCATCGTGTCGCAGCTGCTGACGCTGATGGAC GGTCTCAAGCAGAGCTCGCACGTGATTGTCATGGCCGCCACCAATCGGCCCAACTC GATCGATGCCGCGCTTAGGCGCTTTGGCCGCTTTGATCGCGAAATCGACATTGGCAT TCCCGATGCCACCGGTCGTCTCGAGGTGCTGCGCATCCACACCAAGAACATGAAGTT GGCTGATGACGTCGATTTGGAACA NL016 SEQ ID NO: 1147 SEQ ID NO: 1148 SEQ ID NO: 1101 GTTCACCGGCG CGGCATAGTCAGA GACGCCAGTATCAGAAGACATGCTTGGTCGTGTATTCAACGGAAGTGGTAAGCCCAT AYATYCTGCG ATSGGRATCTG CGACAAAGGACCTCCCATTCTTGCTGAGGATTATCTCGACATTCAAGGTCAACCCATC AATCCTTGGTCGCGTATCTATCCCGAGGAAATGATCCAGACTGGAATTTCAGCCATCG ACGTCATGAACTCGATTGCTCGTGGCCAGAAAATCCCCATCTTTTCAGCTGCCGGTCT ACCTCACAACGAAATTGCTGCTCAAATCTGTAGACAGGCTGGTCTTGTCAAACTGCCA GGAAAGTCAGTTCTCGATGACTCTGAGGACAACTTTGCTATTGTATTCGCAGCCATGG GAGTCAACATGGAAACTGCTCGATTCTTCAAACAGGATTTCGAGGAGAACGGCTCTAT GGAGAACGTGTGCCTGTTCTTGAACCTGGCGAACGACCCGACGATCGAGCGTATCAT CACACCACGCCTGGCGCTGACGGCCGCCGAGTTCCTGGCCTACCAGTGCGAGAAGC ACGTGCTCGTCATCCTCACCGACATGAGCTCCTACGCCGAGGCGCTGCGAGAGGTG TCCGCCGCCCGCGAGGAGGTGCCCGGCCGTCGTGGTTTCCCCGGTTACATGTACAC CGATCTGGCCACCATCTACGAGCGCGCCGGACGAGTCGAGGGTCGCAACGGCTCCA TCACG NL018 SEQ ID NO: 1149 SEQ ID NO: 1150 SEQ ID NO: 1103 GCTCCGTCTACA GTGCATCGGTACC TATGCAAATGCCTGTGCCACGCCCACAAATAGAAAGCACACAACAGTTTATTCGATCC THCARCCNGAR AHSCHGCRTC GAGAAAACAACATACTCGAATGGATTCACCACCATTGAGGAGGACTTCAAAGTAGACA GG CTTTCGAATACCGTCTTCTGCGCGAGGTGTCGTTCCGCGAATCTCTGATCAGAAACTA CTTGCACGAGGCGGACATGCAGATGTCGACGGTGGTGGACCGAGCATTGGGTCCCC CCTCGGCGCCACACATCCAGCAGAAGCCGCGCAACTCAAAAATCCAGGAGGGCGGC GATGCCGTCTTTTCCATCAAGCTCAGCGCCAACCCCAAGCCTCGGCTGGTCTGGTTC AAGAACGGTCAGCGCATCGGTCAGACGCAGAAACACCAGGCCTCCTACTCCAATCAG ACCGCCACGCTCAAGGTCAACAAAGTCAGCGCTCAAGACTCCGGCCACTACACGCT GCTTGCTGAAAATCCGCAAGGATGTACTGTGTCCTCAGCTTACCTAGCTGTCGAATCA GCTGGCACTCAAGATACAGGATACAGTGAGCAATACAGCAGACAAGAGGTGGAGAC GACAGAGGCGGTGGACAGCAGCAAGATGCTGGCACCGAACTTTGTTCGCGTGCCGG CCGATCGCGACGCGAGCGAAGGCAAGATGACGCGGTTTGACTGCCGCGTGACGGG CCGACCCTACCCGGACGTGGCCTGGTTCATCAACGGCCAACAGGTGGCTGACGACG CCACGCACAAGATCCTCGTCAACGAGTCTGGCAACCACTCGCTCATGATCACCGGCG TCACTCGCTTGGACCACGGAGTGGTCGGCTGTATTGCCCGCAACAAGGCTGGCGAA ACCTCATTCCAGTGCAACTTGAATGTGATCGAGAAAGAACTGGTTGTGGCGCCGAAA TTTGTGGAGAGATTCGCACAAGTGAATGTGAAGGAGGGTGAGCCGGTTGTGCTGAG CGCACGCGCTGTTGGCACACCTGTTCCAAGAATAACATGGCAGAAGGACGGCGCCC CGATCCAGTCGGGACCGAGCGTGAGTCTGTTTGTGGACGGAGGTGCGACCAGCCTG GACATCCCGTACGCGAAGGCGTCG NL019 SEQ ID NO: 1151 SEQ ID NO: 1152 SEQ ID NO: 1105 GTCCTGTCTGCT CCTTGATCTCHGC CGATGACACATACACAGAAAGTTACATCAGTACCATTGGTGTAGATTTTAAAATTAGAA GCTVMGWTTYGC MGCCATBGTC CAATAGATCTCGATGGAAAAACCATAAAGCTTCAGATTTGGGACACGGCCGGCCAGG AGCGGTTCCGCACGATCACATCGAGCTACTACCGGGGCGCCCACGGCATCATTGTG GTGTACGACTGCACCGACCAGGAGTCGTTCAACAACCTCAAACAGTGGCTCGAGGA GATTGACCGCTACGCCTGTGATAATGTCAACAAACTGCTCGTCGGCAACAAGTGTGA TCAGACCAACAAAAAGGTCGTCGACTATACACAGGCTAAGGAATACGCCGACCAGCT GGGCATTCCGTTCCTGGAGACGTCGGCGAAGAACGCGACCAATGTGGAGCAGGCGT TCAT NL021 SEQ ID NO: 1153 SEQ ID NO: 1154 SEQ ID NO: 1107 CTCAATCAGAGC GGAATTGCCSAGV CGTCAGTCTCAATTCTGTCACCGATATCAGCACCACGTTCATTCTCAAGCCACAAGAG GTYCCHCCRTAY CGDGADCC AACGTGAAGATAACGCTTGAGGGCGCACAGGCCTGTTTCATTTCACACGAACGACTT GG GTGATCTCACTGAAGGGAGGAGAACTCTATGTTCTAACTCTCTATTCCGATAGTATGC GCAGTGTGAGGAGTTTTCATCTGGAGAAAGCTGCTGCCAGTGTCTTGACTACTTGTAT CTGTGTTTGTGAGGAGAACTATCTGTTCCTTGGTTCCCGTCTTGGAAACTCACTGTTG CTCAGGTTTACTGAGAAGGAATTGAACCTGATTGAGCCGAGGGCCATCGAAAGCTCA CAGTCCCAGAATCCGGCCAAGAAGAAAAAGCTGGATACTTTGGGAGATTGGATGGCA TCTGACGTCACTGAAATACGCGACCTGGATGAACTAGAAGTGTATGGCAGTGAAACA CAAACCTCTATGCAAATTGCATCCTACATATTC NL022 SEQ ID NO: 1155 SEQ ID NO: 1156 SEQ ID NO: 1109 GCGTGCTCAAG CCAGTTCATGCTTR TACATTGCACAGAGAATTCCTTTCCGAGCCAGATCTGCAATCTTACAGTGTTATGATA TAYATGACBGAY TANGCCCANGC ATTGATGAAGCTCACGAGAGGACGTTGCACACTGATATACTGTTCGGTTTGGTGAAA GG GATGTCGCCCGATTCAGACCTGACTTGAAGCTGCTCATATCAAGCGCCACACTGGAT GCTCAGAAATTCTCCGAGTTTTTCGACGATGCACCCATCTTCAGGATTCCGGGCCGT AGATTTCCGGTGGACATCTACTACACAAAGGCGCCCGAGGCTGACTACGTGGACGCA TGTGTCGTTTCGATCCTGCAGATCCACGCCACTCAGCCGCTGGGAGACATCCTGGTC TTCCTCACCGGTCAGGAGGAGATCGAAACCTGCCAGGAGCTGCTGCAGGACAGAGT GCGCAGGCTTGGGCCTCGTATCAAGGAGCTGCTCATATTGCCCGTCTATTCCAACCT ACCCAGTGATATGCAGGCAAAGATTTTCCTGCCCACTCCACCAAATGCTAGAAAGGTA GTATTGGCCACAAATATTGCAGAAACCTCATTGACCATCGACAATATAATCTACGTGA TTGATCCTGGTTTTTGTAAGCAGAATAACTTCAATTCAAGGACTGGAATGGAATCGCT TGTTGTAGTGCCTGTTTCAAAGGCATCGGCCAATCAGCGAGCAGGGCGGGCGGGAC GGGTGGCGGCCGGCAAGTGCTTCCGTCTGTACACG NL023 SEQ ID NO: 1157 SEQ ID NO: 1158 SEQ ID NO: 1111 CCGGAGCTTCT GAAAGCACACGCT CCGGAGCTTCTCTCAGGAACGCCAGCACGAGGAAATGAAGGAATCCTCGGGTCGCA CTCAGGAACGC GTTGCTCTGG TGCATCACAGCGATCCTCTAATCGTCGAGACTCATAGCGGTCACGTGAGAGGAATCT CGAAGACCGTCCTCGGACGGGAGGTCCACGTGTTTACCGGGATTCCGTTTGCGAAA CCTCCCATCGGTCCGTTGCGATTCCGTAAACCGGTTCCCGTCGACCCGTGGCACGG CGTTCTGGATGCGACCGCGCTTCCCAACAGCTGCTACCAGGAACGGTACGAGTATTT CCCGGGCTTCGAGGGAGAGGAAATGTGGAATCCGAATACGAATTTGTCCGAAGATTG TCTGTATTTGAACATATGGGTGCCGCACCGGTTGAGAATCCGACACAGAGCCAACAG CGAGGAGAATAAACCAAGAGCGAAGGTGCCGGTGCTGATCTGGATCTACGGCGGGG GTTACATGAGCGGCACAGCTACACTGGACGTGTACGATGCTGACATGGTGGCCGCC ACGAGTGACGTCATCGTCGCCTCCATGCAGTACCGAGTGGGTGCGTTCGGCTTCCTC TACCTCGCACAGGACTTGCCTCGAGGCAGCGAGGAGGCGCCGGGCAACATGGGGC TCTGGGACCAGGCCCTTGCCATCCGCTGGCTCAAGGACAACATTGCCGCCTTTCGGA GGCGATCCCGAACTCATGACGCTCTTTGGCGAGTCGGCTGGGGGTGGATCTGTAAG CATCCACTTGGTATCACCGATAACTCGCGGCCTAGCGCGTCGTGGCATCATGCAGTC AGGAACGATGAACGCACCGTGGAGCTTCATGACGGCGGAACGCGCGACCGAAATCG CCAAGACGCTCATTGACGACTGCGGCTGCAACTCGTCGCTCCTGACCGACGCTCCC AGTCGCGTCATGTCCTGTATGCGATCAGTCGAGGCAAAGATCATCTCCGTGCAGCAA TGGAACAGCTACTCCGGCATTCTCGGACTTCCGTCTGCACCCACCATCGACGGCATT TTCCTGCCCAAACATCCCCTCGATCTGCTCAAGGAAGGCGACTTTCAGGACACTGAA ATACTCATCGGCAGTAATCAGGATGAGGGTACCTACTTCATATTGTACGATTTCATCG ACTTCTTCCAAAAAGACGGGCCGAGTTTCTTGCAAAGAGATAAGTTCCTAGACATCAT CAACACAATTTTCAAGAATATGACGAAAATTGAGAGGGAAGCTATCATATTCCAGTAC ACAGATTGGGAGCATGTTATGGATGGTTATCTGAACCAGAAAATGATCGGAGATGTG GTTGGTGATTACTTCTTCATCTGTCCGACAAATCATTTCGCACAGGCATTCGCAGAGC ATGGAAAGAAGGTGTATTACTATTTCTTCACCCAGAGAACCAGTACAAGTTTATGGGG CGAGTGGATGGGAGTCATGCATGGAGATGAAATAGAATACGTTTTTGGTCATCCTCTC AACATGTCGCTGCAATTCAATGCTAGGGAAAGGGATCTCAGTCTGCGAATAATGCAA GCTTACTCTAGGTTTGCATTGACAGGTAAACCAGTGCCTGATGACGTGAATTGGCCTA TCTACTCCAAGGACCAGCCGCAGTATTACATTTTCAATGCGGAGACTTCGGGCACAG GCAGAGGACCCAGAGCAACAGCGTGTGCTTTC NL027 SEQ ID NO: 1159 SEQ ID NO: 1160 SEQ ID NO: 1113 GCCGATCGTKYT GGTATAGATGAARC AGAAGACGGCACGGTGCGTATTTGGCACTCGGGCACCTACAGGCTGGAGTCCTCGC VACKGGCTC ARTCDCCVACCCA TGAATTATGGCCTCGAAAGAGTGTGGACCATTTGCTGCATGCGAGGATCCAACAATG TGGCTCTTGGCTACGACGAAGGCAGCATAATGGTGAAGGTGGGTCGGGAGGAGCCG GCCATCTCGATGGATGTGAACGGTGAGAAGATTGTGTGGGCGCGCCACTCGGAGAT ACAACAGGTCAACCTCAAGGCCATGCCGGAGGGCGTCGAAATCAAAGATGGCGAAC GACTGCCGGTCGCCGTTAAGGATATGGGCAGCTGTGAAATATATCCGCAGACCATCG CTCATAATCCCAACGGCAGATTCCTAGTCGTTTGTGGAGATGGAGAGTACATAATTCA CACATCAATGGTGCTAAGAAATAAGGCGTTTGGCTCGGCCCAAGAGTTCATTTGGGG ACAGGACTCGTCCGAGTATGCTATCAGAGAAGGAACATCCACTGTCAAAGTATTCAAA AACTTCAAAGAAAAGAAATCATTCAAGCCAGAATTTGGTGCTGAGAGCATATTCGGCG GCTACCTGCTGGGAGTTTGTTCGTTGTCTGGACTGGCGCTGTACGACTGGGAGACCC TGGAGCTGGTGCGTCGCATCGAGATCCAACCGAAACACGTGTACTGGTCGGAGAGT GGGGAGCTGGTGGCGCTGGCCACTGATGACTCCTACTTTGTGCTCCGCTACGACGC ACAGGCCGTGCTCGCTGCACGCGACGCCGGTGACGACGCTGTCACGCCGGACGGC GTCGAGGATGCATTCGAGGTCCTTGGTGAAGTGCACGAAACTGTAAAAACTGGATTG -
TABLE 2-CS Target Primer Forward Primer Reverse cDNA Sequence (sense strand) ID 5′ → 3′ 5′ → 3′ 5′ → 3′ CS001 SEQ ID NO: 1706 SEQ ID NO: 1707 SEQ ID NO: 1682 CATTTGAAGCGT CTTCGTGCCCTT TAAAGCATGGATGTTGGACAAACTGGGTGGCGTGTACGCGCCGCGGCCGTCGACCGG TTWRMYGCYCC GCCRATKATRAA CCCCCACAAGTTGCGCGAGTGCCTGCCGCTGGTGATCTTCCTCAGGAACCGGCTCAA BACG GTACGCGCTCACCGGAAATGAAGTGCTTAAGATTGTAAAGCAGCGACTTATCAAAGTTG ACGGCAAAGTCAGGACAGACCCCACATATCCCGCTGGATTTATGGATGTTGTTTCCATT GAAAAGACAAATGAGCTGTTCCGTCTTATATATGATGTCAAAGGCAGATTTACTATTCAC CGTATTACTCCTGAGGAGGCTAAATACAAGCTGTGCAAGGTGCGGCGCGTGGCGACG GGCCCCAAGAACGTGCCTTACCTGGTGACCCACGACGGACGCACCGTGCGATACCCC GACCCACTCATCAAGGTCAACGACTCCATCCAGCTCGACATCGCCACCTCCAAGATCA TGGACTTCATCAAGTTTGAATCTGGTAACCTATGTATGATCACGGGAGGCCGTAACTTG GGGCGCGTGGGCACCATCGTGTCCCGCGAGCGACATCCCGGGTCCTTCGACATCGTG CATATACGGGACTCCACCGGACATACCTTCGCTACCAGATTGAACAACGTGTTCATAAT CGGCAAGGGCACGAAG CS002 SEQ ID NO: 1708 SEQ ID NO: 1709 SEQ ID NO: 1684 GAGTTTCTTTAG GCAATGTCATCC GAGTTTCTTTAGTAAAGTATTCGGTGGCAAGAAGGAGGAGAAGGGTCCATCAACACAC TAAAGTATTCGG ATCAKRTCRTGTAC GAAGCTATACAGAAATTACGCGAAACGGAAGAGTTATTGCAGAAGAAACAAGAGTTTCT TGG AGAGCGAAAGATCGACACTGAATTACAAACGGCGAGAAAACATGGCACAAAGAATAAG AGAGCTGCCATTGCGGCACTGAAGCGCAAGAAGCGTTATGAAAAGCAGCTTACCCAGA TTGATGGCACGCTTACCCAAATTGAGGCCCAAAGGGAAGCGCTAGAAGGAGCTAACAC CAATACACAGGTGCTTAACACTATGCGAGATGCTGCTACCGCTATGAGACTCGCCCAC AAGGATATCGATGTAGACAAGGTACACGATCTGATGGATGACATTGC CS003 SEQ ID NO: 1710 SEQ ID NO: 1711 SEQ ID NO: 1686 CAGGAGTTGAR CAGGTTCTTCCT TGGTCTCCGCAACAAGCGTGAGGTGTGGAGGGTGAAGTACACGCTGGCCAGGATCCG RATHATYGGHSA CTTKACRCGDCC TAAGGCTGCCCGTGAGCTGCTCACACTCGAGGAGAAAGACCCTAAGAGGTTATTCGAA RTA GGTAATGCTCTCCTTCGTCGTCTGGTGAGGATCGGTGTGTTGGATGAGAAGCAGATGA AGCTCGATTATGTACTCGGTCTGAAGATTGAGGACTTCTTGGAACGTCGTCTCCAGACT CAGGTGTTCAAGGCTGGTCTAGCTAAGTCTATCCATCATGCCCGTATTCTTATCAGACA GAGGCACATCCGTGTCCGCAAGCAAGTTGTGAACATCCCTTCGTTCATCGTGCGGCTG GACTCTGGCAAGCACATTGACTTCTCGCTGAAGTCTCCGTTCGGCGGCGGCCGGCCG CS006 SEQ ID NO: 1712 SEQ ID NO: 1713 SEQ ID NO: 1688 ACCTGCCAAGG GAGATCTTCTGC ACCTGCCAAGGAATGAGGAACGCTTTGTATGACAAATTGGATGATGATGGTATAATTGC AATGMGVAAYGC ACRTTKACVGCATC ACCAGGGATTCGTGTATCTGGTGACGATGTAGTCATTGGAAAAACTATAACTTTGCCAG AAAACGATGATGAGCTGGAAGGAACATCAAGACGATACAGTAAGAGAGATGCCTCTAC ATTCTTGCGAAACAGTGAAACTGGTATTGTTGACCAAGTTATGCTTACACTTAACAGCG AAGGATACAAATTTTGTAAAATACGTGTGAGATCTGTGAGAATCCCACAAATTGGAGAC AAATTTGCTTCTCGTCATGGTCAAAAAGGGACTTGTGGTATTCAATATAGGCAAGAAGA TATGCCTTTCACTTGTGAAGGATTGACACCAGATATTATCATCAATCCACATGCTATCCC CTCTCGTATGACAATTGGTCACTTGATTGAATGTATTCAAGGTAAGGTCTCCTCAAATAA AGGTGAAATAGGTGATGCTACACCATTTAACGATGCTGTCAACGTGCAGAAGATCTC CS007 SEQ ID NO: 1714 SEQ ID NO: 1715 SEQ ID NO: 1690 CGGTGTCCATTC CGATGCAAGTAG TTTCAGAGATTTCTTGTTGGAACCAGAGATTTTGGGGGCTATCGTCGATTGCGGTTTCG ACAGYTCCGG GTGTCKGARTCY AGCACCCTTCAGAAGTTCAACATGAATGTATTCCCCAAGCTGTTTTGGGAATGGATATT TC CTTTGTCAAAGCTAAATCCGGAATGGGAAAAACCGCCGTATTTGTTTTAGCAACACTGC AACAGCTAGAACCTTCAGAAAACCATGTTTACGTATTAGTAATGTGCCATACAAGGGAA CTCGCTTTCCAAATAAGCAAGGAATATGAGAGGTTCTCTAAATATATGGCTGGTGTTAG AGTATCTGTATTCTTTGGTGGGATGCCAATTCAGAAAGATGAAGAAGTATTGAAGACAG TGGCACAGGAGTGTCGGTTGAAGCTGTAGATCCTGTCTTCCAAGCAAAGATGTTGGAT ATGTTGAAGCAAACTGGACGACCTGAGATGGTAGTGGGATGGTACCACTCGCATCCTG GCTTTGGATGTTGGTTATCTGGAGTCGACATTAATACTCAGCAGTCTTTCGAAGCTTTG TCTGAACGTGCTGTAGCTGTAGTGGTTGATCCCATTCAGTCTGTCAAGGGC CS014 SEQ ID NO: 1722 SEQ ID NO: 1723 SEQ ID NO: 1698 ATGGCACTGAG GAACTTGCGGTT TTCAAAAGCAGATCAAGCATATGATGGCCTTCATCGAACAAGAGGCTAATGAAAAGGCC CGAYGCHGATG GABGTTSCGDCC GAGGAAATCGATGCAAAGGCCGAAGAGGAGTTCAACATTGAAAAAGGCCGCCTGGTG CAGCAGCAGCGGCTCAAGATCATGGAATACTACGAAAAGAAAGAGAAACAAGTGGAAC TCCAGAAAAAGATCCAATCTTCGAACATGCTGAATCAAGCCCGTCTGAAGGTGCTCAAA GTGCGTGAGGACCACGTACGCAACGTTCTCGACGAGGCTCGCAAGCGCCTGGCTGAG GTGCCCAAAGACGTGAAACTTTACACAGATCTGCTGGTCACGCTCGTCGTACAAGCCC TATTCCAGCTCATGGAACCCACAGTAACAGTTCGCGTTAGGCAGGCGGACGTCTCCTT AGTACAGTCCATATTGGGCAAGGCACAGCAGGATTACAAAGCAAAGATCAAGAAGGAC GTTCAATTGAAGATCGACACCGAGAATTCCCTGCCCGCCGATACTTGTGGCGGAGTGG AACTTATTGCTGCTAGAGGGCGTATTAAGATCAGCAACACTCTGGAGTCTCGTCTGGA GCTGATAGCCCAACAACTGTTGCCCGAAATACGTACCGCATTGTTC CS015 SEQ ID NO: 1724 SEQ ID NO: 1725 SEQ ID NO: 1700 GCCGCAAGGAG CGATCAAAGCGW ATCGTGCTTTCAGACGATAACTGCCCCGATGAGAAGATCCGCATGAACCGCGTCGTGC ACBGTVTGC CCRAAVCGACG GAAACAACTTGCGTGTACGCCTGTCAGACATAGTCTCCATAGCGCCTTGTCCATCGGT CAAATATGGGAAACGGGTACATATATTGCCCATTGATGATTCTGTCGAGGGTTTGACTG GAAATTTATTCGAAGTCTACTTGAAACCATACTTCATGGAAGCTTATCGGCCTATCCATC GCGATGACACATTCATGGTTCGCGGGGGCATGAGGGCTGTTGAATTCAAAGTGGTGGA GACTGATCCGTCGCCGTATTGCATCGTCGCTCCCGACACAGTGATACACTGCGAAGGA GACCCTATCAAACGAGAGGAAGAAGAAGAAGCCCTAAACGCCGTAGGGTACGACGAC ATCGGTGGCTGTCGTAAACAGCTCGCTCAGATCAAAGAGATGGTCGAGTTGCCTCTAA GGCATCCGTCGCTGTTCAAGGCAATTGGTGTGAAGCCGCCACGTGGAATCCTCATGTA TGGGCCGCCTGGTACCGGCAAAACTCTCATTGCTCGGGCAGTGGCTAATGAAACTGGT GCATTCTTCTTTCTGATCAACGGGCCGGAGATCATGTCCAAACTCGCGGGCGAGTCCG AATCGAACCTTCGCAAGGCATTCGAGGAAGCGGACAAGAACTCCCCGGCTATAATCTT CATCGATGAACTGGATGCCATCGCACCAAAGAGGGAGAAGACTCACGGTGAAGTGGA GCGTCGTATTGTGTCGCAACTACTTACTCTTATGGATGGAATGAAGAAGTCATCGCACG TGATCGTAATGGCCGCCACCAACCGTCCGAATTCGATCGACCCGGCGCTA CS016 SEQ ID NO: 1726 SEQ ID NO: 1727 SEQ ID NO: 1702 GTTCACCGGCG GTCGCGCAGGTA AGGATGGAAGCGGGGATACGTTTGAGCATCTCCTTGGGGAAGATACGGAGCAGCTGC AYATYCTGCG GAAYTCKGC CAGCCGATGTCCAGCGACTCGAATACTGTGCGGTTCTCGTAGTTGCCCTGTGTGATGA AGTTCTTCTCGAACTTGGTGAGGAACTCGAGGTAGAGCAGATCGTCGGGTGTCAGGGC TTCCTCACCGACGACAGCCTTCATGGCCTGCACGTCCTTACCGATGGCGTAGCAGGCG TACAGCTGGTTGGAAACATCAGAGTGGTCCTTGCGGGTCATTCCCTCACCGATGGCAG ACTTCATGAGACGAGACAGGGAAGGCAGCACGTTTACAGGCGGGTAGATCTGTCTGTT GTGGAGCTGACGGTCTACGTAGATCTGTCCCTCAGTGATGTAGCCCGTTAAATCGGGA ATAGGATGGGTGATGTCGTCGTTGGGCATAGTCAAGATGGGGATCTGCGTGATGGATC CGTTTCTACCCTCTACACGCCCGGCTCTCTCGTAGATGGTGGCCAAATCGGTGTACAT GTAACCTGGGAAACCACGTCGTCCGGGCACCTCCTCACGGGCGGCGGACACTTCACG CAGAGCCTCCGCGTACGAAGACATGTCAGTCAAGATTACCAGCACGTGTTTCTCACAC TGGTAGGCCAAGAACTCAGCAGCAGTCAAGGCCAAACGTGGTGTGATGATTCTCTCAA TAGTGGGATCGTTGGCCAGATTCAAGAACAGGCACACGTTCTCCATGGAGCCGTTCTC CTCGAAGTCCTGCTTGAAGAACCGGGCCGTCTCCATGTTCACACCCATGGCGGCGAAC ACGATGGCAAAGTTGTCCTCGTGGTCGTCCAGCACAGATTTGCCGGGGATCTTTACAA GACCGGCTTGCCTACAGATCTGGGCGGCAATTTCGTTGTGTGGCAGACCGGCAGCCG AGAAAATGGGGATCTTTTGCCCGCGAGCAATGGAGTTCATCACGTCGATAGCGGAGAT ACCAGTCTGGATCATTTCCTCAGGGTAGATACGGGACCAGGGGTTGATGGGCTGTCCC TGGATGTCCAAAAAGTCTTCAGCAAGGATTGGGGGACCTTTGTCAATGGGTTTTCCAGA GCCGTTGAATACGCGACCCAACATGTCTTCGGAGACAGGGGTGC CS018 SEQ ID NO: 1728 SEQ ID NO: 1729 SEQ ID NO: 1704 GCTCCGTCTACA GTGCATCGGTAC GCTCCGTCTACATTCAGCCGGAAGGCGTCCCTGTACCTGCTCAGCAATCCCAACAGCA THCARCCNGAR CAHSCHGCRTC GCAGAGTTACCGCCACGTCAGCGAGAGCGTCGAACACAAATCCTACGGCACGCAAGG GG GTACACCACTTCGGAACAGACCAAGCAGACACAGAAGGTGGCGTACACCAACGGTTCC GACTACTCTTCCACGGACGACTTTAAGGTGGATACGTTCGAATACAGACTCCTCCGAG AAGTTTCGTTCAGGGAATCCATCACGAAGCGGTACATTGGCGAGACAGACATTCAGAT CAGCACGGAGGTCGACAAGTCTCTCGGTGTGGTGACCCCTCCTAAGATAGCACAAAAG CCTAGGAATTCCAAGCTGCAGGAGGGAGCCGACGCTCAGTTTCAAGTGCAGCTGTCG GGTAACCCGCGGCCACGGGTGTCATGGTTCAAGAACGGGCAGAGGATAGTCAACTCG AACAAACACGAAATCGTCACGACACATAATCAAACAATACTTAGGGTAAGAAACACACA AAAGTCTGATACTGGCAACTACACGTTGTTGGCTGAAAATCCTAACGGATGCGTCGTCA CATCGGCATACCTGGCCGTGGAGTCGCCTCAAGAAACTTACGGCCAAGATCATAAATC ACAATACATAATGGACAATCAGCAAACAGCTGTAGAAGAAAGAGTAGAAGTTAATGAAA AAGCTCTCGCTCCGCAATTCGTAAGAGTCTGCCAAGACCGCGATGTAACGGAGGGGAA AATGACGCGATTCGATTGCCGCGTCACGGGCAGACCTTACCCAGAAGTCACGTGGTTC ATTAACGATAGACAAATTCGAGACGATTATWATCATAAGATATTAGTAAACGAATCGTGT AATCATGCACTTATGATTACAAACGTCGATCTCAGTGATAGTGGCGTAGTATCATGTATA GCACGCAACAAGACCGGCGAAACTTCGTTTCAGTGTAGGCTGAACGTGATAGAGAAGG AGCAAGTGGTCGCTCCCAAATTCGTGGAGCGGTTCAGCACGCTCAACGTGCGCGAGG GCGAGCCCGTGCAGCTGCACGCGCGCGCCGTCGGCACGCCTACGCCACGCATCACA TGGCAGAAGGACGGCGTTCAAGTTATACCCAATCCAGAGCTACGAATAAATACCGAAG GTGGGGCCTCGACGCTGGACATCCCTCGAGCCAAGGCGTCGGACGCGGGATGGTAC CGATGCAC -
TABLE 2-PX Target Primer Forward Primer Reverse cDNA Sequence (sense strand) ID 5′ → 3′ 5′ → 3′ 5′ → 3′ PX001 SEQ ID NO: 2110 SEQ ID NO: 2111 SEQ ID NO: 2100 GGCCCCAAGAAG CTTCGTGCCCTTGC GGCCCCAAGAAGCATTTGAAGCGCCTGAACGCGCCGCGCGCATGGATGCTGGA CATTTGAAGCG CRATKATRAABACG CAAGCTCGGCGGCGTGTACGCGCCGCGGCCCAGCACGGGCCCGCACAAGCTG CGCGAGTGCCTGCCGCTCGTCATCTTCCTGCAACCGCCTCAAGTACGCGCTCAG CGGCAACGAGGTGCTGAAGATCGTGAAGCAGCGCCTCATCAAGGTGGACGGCA AGGTCCGCACCGACCCCACCTACCCGGCTGGATTCATGGATGTTGTGTCGATTG AAAAGACCAATGAGCTGTTCCGTCTGATCTACGATGTGAAGGGACGCTTCACCAT CCACCGCATCACTCCCGAGGAGGCCAAGTACAAGCTGTGCAAGGTGAAGCGCG TGGCGACGGGCCCCAAGAACGTGCCGTACATCGTGACGCACAACGGCCGCACG CTGCGCTACCCCGACCCGCTCATCAAGGTCAACGACTCCATCCAGCTCGACATC GCCACCTGCAAGATCATGGACATCATCAAGTTCGACTCAGGTAACCTGTGCATGA TCACGGGAGGGCGTAACTTGGGGCGAGTGGGCACCATCGTGTCCCGCGAGAGG CACCCCGGGAGCTTCGACATCGTCCACATCAAGGACACCACCGGACACACCTTC GCCACCAGGTTGAACAACGTGTTCATCATCGGCAAGGGCACGAAG PX009 SEQ ID NO: 2112 SEQ ID NO: 2113 SEQ ID NO: 2102 GCACGTTGATCTG GCAGCCCACGCYYT GCACGTTGATCTGGTACAAAGGAACCGGTTACGACAGCTACAAGTATTGGGAGA GTACARRGGMACC GCACTC ACCAGCTCATTGACTTTTTGTCAGTATACAAGAAGAAGGGTCAGACAGCGGGTGC TGGTCAGAACATCTTCAACTGTGACTTCCGCAACCCGCCCCCACACGGCAAGGT GTGCGACGTGGACATCCGCGGCTGGGAGCCCTGCATTGATGAGAACCACTTCTC TTTCCACAAGTCTTCGCCTTGCATCTTCTTGAAGCTGAATAAGATCTACGGCTGG CGTCCAGAGTTCTACAACGACACGGCTAACCTGCCTGAAGCCATGCCCGTGGAC TTGCAGACCCACATTCGTAACATTACTGCCTTCAACAGAGACTATGCGAACATGG TGTGGGTGTCGTGCCACGGCGAGACGCCGGCGGACAAGGAGAACATCGGGCC GGTGCGCTACCTGCCCTACCCGGGCTTCCCCGGGTACTTCTACCCGTACGAGAA CGCCGAGGGGTATCTGAGCCCGCTGGTCGCCGTGCATTTGGAGAGGCCGAGGA CCGGCATAGTGATCAACATCGAGTGCAAAGCGTGGGCTGC PX010 SEQ ID NO: 2114 SEQ ID NO: 2115 SEQ ID NO: 2104 GTGGCTGCATACA CGCGGCTGCTCCAT GTGGCTGCATACAGTTCATTACGCAGTACCAGCACTCTAGTGGACAACGTCGCG GTTCATTACGCAG GAAYASYTG TTCGGGTCACCACTGTCGCGCGCAATTGGGGCGACGCAGCCGCCAACTTACAC CACATATCGGCGGGCTTCGACCAGGAGGCGGCGGCGGTGGTGATGGCGCGGC TGGTGGTGTACCGCGCGGAGCAGGAGGACGGGCCCGACGTGCTGCGCTGGCT CGACCGCATGCTCATACGCCTGTGCCAGAAGTTCGGCGAGTACGCGAAGGACG ACCCGAACAGCTTCCGTCTGTCGGAGAACTTCAGCCTGTACCCGCAGTTCATGT ACCACCTGCGCCGCTCGCAGTTCCTGCAGGTCTTCAACAACTCGCCCGACGAGA CCACCTTCTACAGACACATGCTGATGCGCGAAGACCTGACCCAATCCCTCATCAT GATCCAGCCGATCCTCTACTCGTACAGCTTCGGAGGCGCGCCCGAACCCGTGCT GTTAGACACCAGCTCCATCCAGCCCGACCGCATCCTGCTCATGGACACCTTCTT CCAGATCCTCATCTACCATGGAGAGACAATGGCGCAATGGCGCGCTCTCCGCTA CCAAGACATGGCTGAGTACGAGAACTTCAAGCAGCTGCTGCGAGCGCCCGTGG ACGACGCGCAGGAGATCCTGCAGACCAGGTTCCCCGTGCCGCGGTACATTGATA CAGAGCACGGCGGCTCACAGGCCCGGTTCTTGCTTTCCAAAGTGAATCCCTCTC AGACTCACAACAACATGTACGCGTATGGCGGGGCGATGCCGATACCATCAGCGG ACGGTGGCGCCCCCGTGTTGACGGATGACGTGTCGCTGCAAGTGTTCATGGAG CAGCCGCG PX015 SEQ ID NO: 2116 SEQ ID NO: 2117 SEQ ID NO: 2106 GCCGCAAGGAGA GCAATGGCATCAAK GCCGCAAGGAGACCGTGTGCATTGTGCTGTCCGACGACAACTGCCCCGACGAG CBGTVTGC YTCRTCRATG AAGATCCGCATGAACCGCGTCGTCCGGAACAACCTGCGAGTGCGCCTGTCAGAC ATTGTGTCCATCGCTCCTTGCCCGTCAGTGAAGTACGGCAAGAGAGTTCATATTC TGCCCATTGATGACTCTGTTGAGGGTTTGACTGGAAACCTGTTCGAAGTCTACCT GAAGCCGTACTTCATGGAGGCGTACCGGCCCATCCACCGCGACGACACGTTCAT GGTGCGCGGCGGCATGCGCGCCGTCGAGTTCAAGGTGGTGGAGACCGACCCCT CGCCCTACTGCATCGTGGCCCCCGACACGGTCATTCATTGTGAGGGAGAGCCGA TTAAACGCGAGGAAGAAGAGGAGGCTCTCAACGCCGTCGGCTACGACGACATC GGCGGGTGCCGCAAGCAGCTGGCGCAGATCAAGGAGATGGTGGAGCTGCCGCT GCGCCACCCCTCGCTGTTCAAGGCCATCGGGGTCAAGCCGCCGCGGGGGATAC TGATGTACGGGCCCCCGGGGACGGGGAAGACCTTGATCGCTAGGGCTGTCGCT AATGAGACGGGCGCATTCTTCTTCCTCATCAACGGCCCCGAGATCATGTCGAAA CTCGCCGGTGAATCCGAGTCGAACCTGCGCAAGGCGTTCGAGGAGGCGGACAA GAACTCTCCGGCCATCATCCTCATTGATGAACTTGATGCCATTGC PX016 SEQ ID NO: 2118 SEQ ID NO: 2119 SEQ ID NO: 2108 GTTCACCGGCGAY CATCTCCTTGGGGA GTTCACCGGCGATATTCTGCGCACGCCCGTCTCTGAGGACATGCTGGGTCGTAT ATYCTGCG AGATACGCAGC TTTCAACGGCTCCGGCAAGCCCATCGACAAGGGGCCCCCGATCCTGGCCGAGG AGTACCTGGACATCCAGGGGCAGCCCATCAACCCGTGGTCCCGTATCTACCCGG AGGAGATGATCCAGACTGGTATCTCCGCTATCGACGTGATGAACTCCATCGCCC GTGGTCAGAAGATCCCCATCTTCTCCGCCGCCGGTCTGCCCCACAACGAGATTG CTGCTCAGATCTGTAGGCAGGCTGGTCTTGTCAAGGTCCCCGGAAAATCCGTGT TGGACGACCACGAAGACAACTTCGCCATCGTGTTCGCCGCCATGGGAGTCAACA TGGAGACCGCCAGGTTCTTCAAGCAGGACTTCGAGGAGAACGGTTCCATGGAGA ACGTCTGTCTGTTCTTGAACTTGGCCAATGACCCGACCATTGAGAGGATTATCAC GCCGAGGTTGGCGCTGACTGCTGCCGAGTTCTTGGCCTACCAGTGCGAGAAACA CGTGTTGGTAATCTTGACCGACATGTCTTCATACGCGGAGGCTCTTCGTGAAGTG TCAGCCGCCCGTGAGGAGGTGCCCGGACGACGTGGTTTCCCAGGTTACATGTA CACGGATTTGGCCACAATCTACGAGCGCGCCGGGCGAGTCGAGGGCCGCAACG GCTCCATCACGCAGATCCCCATCCTGACCATGCCCAACGACGACATCACCCACC CCATCCCCGACTTGACCGGGTACATCACTGAGGGACAGATCTACGTGGACCGTC AGCTGCACAACAGGCAGATCTACCCGCCGGTGAATGTGCTCCCGTCGCTATCTC GTCTCATGAAGTCCGCCATCGGAGAGGGCATGACCAGGAAGGACCACTCCGAC GTGTCCAACCAACTGTACGCGTGCTACGCCATCGGCAAGGACGTGCAGGCGAT GAAGGCGGTGGTGGGCGAGGAGGCGCTCACGCCCGACGACCTGCTCTACCTCG AGTTCCTCACCAAGTTCGAGAAGAACTTCATCACACAGGGAAGCTACGAGAACC GCACAGTGTTCGAGTCGCTGGACATCGGCTGGCAGCCCCTGCGTATCTTCCCCA AGGAGATG -
TABLE 2-AD Target Primer Forward Primer Reverse cDNA Sequence (sense strand) ID 5′→3′ 5′→3′ 5′→3′ AD001 SEQ ID NO: 2374 SEQ ID NO: 2375 SEQ ID NO: 2364 GGCCCCAAGAAGCA CGCTTGTCCCG GGCCCCAAGAAGCATTTGAAGCGTTTAAATGCTCCTAAAGCATGGATGTTGGACAA TTTGAAGCG CTCCTCNGCRAT ACTCGGAGGAGTATTCGCTCCTCGCCCCAGTACTGGCCCCCACAAATTGCGTGAA TGTTTACCTTTGGTGATTTTTCTTCGCAATCGGCTCAAGTATGCTCTGACGAACTGT GAAGTAACGAAGATTGTTATGCAGCGACTTATCAAAGTTGACGGCAAGGTGCGAAC CGATCCGAATTATCCCGCTGGTTTCATGGATGTTGTCACCATTGAGAAGACTGGAG AGTTCTTCAGGCTGGTGTATGATGTGAAAGGCCGTTTCACAATTCACAGAATTAGT GCAGAAGAAGCCAAGTACAAGCTCTGCAAGGTCAGGAGAGTTCAAACTGGGCCAA AAGGTATTCCATTCTTGGTGACCCATGATGGCCGTACTATCCGTTATCCTGACCCA GTCATTAAAGTTAATGACTCAATCCAATTGGATATTGCCACTTGTAAAATCATGGAC CACATCAGATTTGAATCTGGCAACCTGTGTATGATTACTGGTGGACGTAACTTGGG TCGAGTGGGGACTGTTGTGAGTCGAGAACGTCACCCAGGCTCGTTTGATATTGTT CATATCAAGGATACCCAAGGACATACTTTTGCCACAAGATTGAATAATGTATTCATC ATTGGAAAAGCTACAAAGCCTTACATTTCATTGCCAAAGGGTAAGGGTGTGAAATT GAGTATCGCCGAGGAGCGGGACAAGCG AD002 SEQ ID NO: 2376 SEQ ID NO: 2377 SEQ ID NO: 2366 GAGTTTCTTTAGTAA GCAATGTCATCC GAGTTTCTTTAGTAAAGTATTCGGTGGGAAGAAAGATGGAAAGGCTCCGACCACTG AGTATTCGGTGG ATCAKRTCRTGT GTGAGGCCATTCAGAAACTCAGAGAAACAGAAGAAATGTTAATCAAAAAGCAGGAA AC TTTTTAGAGAAGAAAATCGAACAAGAAATCAATGTTGCAAAGAAAAATGGAACGAAA AATAAGCGAGCTGCTATTCAGGCTCTGAAAAGGAAAAAGAGGTATGAAAAACAATT GCAGCAAATTGATGGCACCTTATCCACAATTGAAATGCAAAGAGAAGCTTTGGAGG GTGCTAATACTAATACAGCTGTATTACAAACAATGAAATCAGCAGCAGATGCCCTTA AAGCAGCTCATCAGCACATGGATGTGGACAAGGTACATGACCTGATGGATGACATT GC AD009 SEQ ID NO: 2378 SEQ ID NO: 2379 SEQ ID NO: 2368 GAGTCCTAGCCGCV CTGGATTCTCTC GAGTCCTAGCCGCCTTGGTTGCAGTATGTTTATGGGTCTTCTTCCAGACACTGGAT YTSGTKGC CCTCGCAMGAH CCTCGTATTCCCACCTGGCAGTTAGATTCTTCTATCATTGGCACATCACCTGGCCT ACC AGGTTTCCGGCCAATGCCAGAAGATAGCAATGTAGAGTCAACTCTCATCTGGTACC GTGGAACAGATCGTGATGACTTCCGTCAGTGGACAGACACCCTTGATGAATTTCTT GCTGTGTACAAGACTCCTGGTCTGACCCCTGGTCGAGGTCAGAACATCCACAACT GTGACTATGATAAGCCGCCAAAGAAAGGCCAAGTTTGCAATGTGGACATCAAGAAT TGGCATCCCTGCATTCAAGAGAATCACTACAACTACCACAAGAGCTCTCCATGCAT ATTCATCAAGCTCAACAAGATCTACAATTGGATCCCTGAATACTACAATGAGAGTAC GAATTTGCCTGAGCAGATGCCAGAAGACCTGAAGCAGTACATCCACAACCTGGAG AGTAACAACTCGAGGGAGATGAACACGGTGTGGGTGTCGTGCGAGGGAGAGAAT CCAG AD015 SEQ ID NO: 2380 SEQ ID NO: 2381 SEQ ID NO: 2370 GGATGAACTACAGC GTCCGTGGGAY GGATGAACTACAGCTTTTCCGAGGAGATACAGTTCTTCTTAAAGGAAAAAGGAGGA TBTTCCGHGG TCRGCHGCAATC AAGAAACTGTATGCATAGTGTTATCAGATGATACATGTCCTGATGGAAAAATAAGAA TGAATAGAGTTGTACGCAACAATTTACGTGTTCGTTTGTCAGATGTTGTATCTGTAC AACCTTGTCCTGATGTTAAGTATGGAAAAAGGATACATGTACTACCAATTGATGATA CAGTTGAAGGACTAACCGGGAATTTGTTTGAGGTGTACTTAAAACCGTACTTTCTC GAAGCATACCGACCCATTCACAAAGATGATGCGTTTATTGTTCGTGGTGGTATGCG AGCAGTAGAATTCAAAGTAGTGGAAACAGATCCTTCACCATATTGTATTGTTGCTCC TGATACTGTTATTCACTGTGAAGGTGATCCAATAAAACGTGAAGAGGAAGAAGAAG CATTAAATGCTGTTGGTTATGATGACATTGGGGGTTGCCGAAAACAGCTAGCACAG ATCAAGGAAATGGTGGAATTGCCATTACGGCACCCCAGTCTCTTTAAGGCTATTGG TGTTAAGCCACCGAGGGGAATACTGCTGTATGGACCCCCTGGAACTGGTAAAACC CTCATTGCCAGGGCTGTGGCTAATGAAACTGGTGCATTCTTCTTTTTAATAAATGGT CCTGAAATTATGAGCAAGCTTGCTGGTGAATCTGAAAGCAACTTACGTAAGGCATT TGAAGAAGCTGATAAGAATGCTCCGGCAATTATATTTATTGATGAACTAGATGCAAT TGCCCCTAAAAGAGAAAAAACTCATGGAGAGGTGGAACGTCGCATAGTTTCACAAC TACTAACTTTAATGGATGGTCTGAAGCAAAGTTCACATGTTATTGTTATGGCTGCCA CAAATAGACCCAACTCTATTGATGGTGCCTTGCGCCGCTTTGGCAGATTTGATAGG GAAATTGATATTGGTATACCAGATGCCACTGGTCGCCTTGAAATTCTTCGTATCCAT ACTAAGAATATGAAGTTAGCTGATGATGTTGATTTGGAACAGATTGCAGCCGAATC CCACGGAC AD016 SEQ ID NO: 2382 SEQ ID NO: 2383 SEQ ID NO: 2372 GTTCACCGGCGAYA GGAATAGGATG GTTCACCGGCGATATTCTGCGCGTGCCCGTGTCCGAGGACATGCTGGGCCGCAC TYCTGCG GGTRATRTCGT CTTCAACGGCAGCGGCATCCCCATCGACGGCGGCCCGCCCATCGTCGCAGAGAC CG CTACCTCGACGTCCAGGGCATGCCGATTAATCCTCAAACGCGCATCTACCCGGAA GAAATGATCCAGACGGGGATCTCGACCATCGACGTGATGACGTCCATCGCGCGAG GGCAGAAGATCCCCATCTTCTCGGGCGCAGGGCTGCCACACAACGAGATCGCTG CGCAGATCTGCCGACAGGCGGGGCTGGTGCAGCACAAGGAGAACAAGGACGACT TCGCCATCGTGTTCGCGGCGATGGGCGTCAACATGGAGACGGCGCGCTTCTTCAA GCGCGAGTTCGCGCAGACGGGCGCGTGCAACGTGGTGCTGTTCCTCAACCTGGC CAACGACCCCACCATCGAGCGCATCATCACCCCGCGCCTCGCGCTCACCGTGGC CGAGTTCCTGGCCTACCAGTGCAACAAGCACGTGCTCGTCATCATGACCGACATG ACCTCCTACGCGGAGGCGCTGCGCGAGGTGAGCGCGGCGCGCGAGGAGGTTCC TGGGCGAAGAGGCTTCCCAGGCTACATGTACACCGATCTCTCCACCATCTACGAG CGCGCTGGCCGTGTGCAAGGCCGCCCCGGCTCCATCACTCAGATCCCCATCCTG ACGATGCCCAACGACGACATCACCCATCCTATTC -
TABLE 3-LD Target cDNA SEQ ID ID NO Corresponding amino acid sequence of cDNA clone LD001 1 SEQ ID NO: 2 (frame +1) GPKKHLKRLNAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTD SNYPAGFMDVITIEKTGEFFRLIYDVKGRFAVHRITAEEAKYKLCKVRRMQTGPKGIPFIVTHDGRTIR LD002 3 SEQ ID NO: 4 (frame −3) AMQALKRKKRLEKNQLQIDGTLTTIELQREALEGASTNTTVLESMKNAAEALKKAHKNLDVDNVHDMMDDI LD003 5 SEQ ID NO: 6 (frame −2) PRRPYEKARLDQELKIIGEYGLRNKREVWRVKYTLAKIRKAARELLTLEEKDQRRLFEGNALLRRLVRIGVLDETRM KLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLVRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLKSPFGGGRP GRVKRKNL LD006 7 SEQ ID NO: 8 (frame +1) HNYGWQVLVASGVVEYIDTLEEETVMIAMNPEDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNT YQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAIACYTGYNQEDSVILNAS AVERGFFRSVFYRSYKDAESKRIGDQEEQFE LD007 9 SEQ ID NO: 10 (frame +1) PKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVIGMDILCQAKSGMGKTAVFVLATLQQL EPADNVVYVLVMCHTRELAFQISKEYERFSKYMPSVKVGVFFGGMPIANDEEVLKNKCPHIVVGTPGRILALVKSR KLVLKNLKHFILDECDKMLELLDMRRDVQEIYRNTPHTKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTL HGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALAQLLTEQNFPAIGIHRGMDQKERLSRYEQFKD FQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLH LD010 11 SEQ ID NO: 12 (frame +1) VKCSRELKIQGGIGSCVSLNVKNPLVSDTEIGMGNTVQWKMCTVTPSTTMALFFEVVNQHSAPIPQGGRGCIQFIT QYQHASGQKRIRVTTVARNWADASANIHHVSAGFDQEAAAVIMARMAVYRAESDDSPDVLRWVDRMLIRLCQKF GEYNKDDPNSFRLGENFSLYPQFMYHLRRSQFLQVFNNSPDETSFYRHMLMREDLTQSLIMIQPILYSYSFNGPP EPVLLDTSSIQPDRILLMDTFFQILIFHGETIAQW LD011 13 SEQ ID NO: 14 (frame −1) PTFKCVLVGDGGTGKTTFVKRHMTGEFEKRYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQ GQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK PFLWLARKLIGDPNLEFVAMPALLP LD014 15 SEQ ID NO: 16 (frame +3) QIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEKQVELQKKIQSSNMLNQARLKVLKV REDHVRTVLEEARKRLGQVTNDQGKYSQILESLILQGLYQLFEKDVTIRVRPQDRELVKSIIPTVTNKYKDATGKDI HLKIDDEIHLSQETTGGIDLLAQKNKIKISNTMEARLELISQQLLPEI LD015 17 SEQ ID NO: 18 (frame −1) RHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFI DELDAI LD016 19 SEQ ID NO: 20 (frame −2) TVSGVNGPLVILEDVKFPKYNEIVQLKLADGTIRSGQVLEVSGSKAVVQVFEGTSGIDAKNTACEFTGDILRTPVSE DMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQTGITAIDVMNSIARGQKIPIFSAAGLPHNEIAA QICRQAGLVKIPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALT AAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMP NDDITHPI LD018 21 SEQ ID NO: 22 (frame +2) TWFKDGQRITESQKYESTFSNNQASLRVKQAQSEDSGHYTLLAENPQGCIVSSAYLAIEPVTTQEGLIHESTFKQQ QTEMEQIDTSKTLAPNFVRVCGDRDVTEGKMTRFDCRVTGRPYPDVTWYINGRQVTDDHNHKILVNESGNHALM ITTVSRNDSGVVTCVARNKTGETSFQCNLNVIEKEQVVAPKFVERFTTVNVAEGEPVSLRARAVGTPVPRITWQR DGAPLASGPDVRIAIDGGASTLNISRAKASDAAWYRC LD027 23 SEQ ID NO: 24 (frame +1) HGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVTAVCFHPELPVALTGSEDGTVRVWHTNTHRLENCLN YGFERVWTICCLKGSNNVSLGYDEGSILVKVGREEPAVSMDASGGKIIWARHSELQQANLKALPEGGEIRDGERL PVSVKDMGACEIYPQTIQHNPNGRFVVVCGDGEYIIYTAMALRNKAFGSAQEFVWAQDSSEYAIRESGSTIRIFKN FKERKNFKSDFSAEGIYGGFLLGIKSVSGLTFYDWETLDLVRRIEIQPRAVYWSDSGKLVCLATEDSYFILSYDSEQ VQKARENNQVAEDGVEAAFDVLGEMNESVRTGLWVGDCFIYT -
TABLE 3-PC Target cDNA SEQ ID ID NO Corresponding amino acid sequence of cDNA clone PC001 247 SEQ ID NO: 248 (frame +1) AWMLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTDSNYPAGFMDVITIE KTGEFFRLIYDVKGRFAVHRITAEEAKYKLCKVRRVQTGPKGIPFLVTHDGRTIRYPDPNIKVNDTIQMEIATSKILDY IKFES PC003 249 SEQ ID NO: 250 (frame: +2) PRRPYEKARLDQELKIIGAFGLRNKREVWRVKYTLAKIRKAARELLTLEEKEPKRLFEGNALLRRLVRIGVLDENRM KLDYVLGLKIEDFLERRLQTQVFKSGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLKSPFGGGRP GRV PC005 251 SEQ ID NO: 252 (frame +3) PNEINEIANTNSRQNIRKLIKDGLIIKKPVAVHSRARVRKNTEARRKGRHCGFGKRKGTANARMPQKELWVQRMR VLRRLLKKYREAKKIDRHLYHALYMKAKGNVFRNKRVLMEYIHKKKAEKARAKMLSDQANARRLKVKQARERRE PC010 253 SEQ ID NO: 254 (frame +3) LKDSLQMSLSLLPPNALIGLITFGKMVQVHELGTEGCSKSYVFCGTKDLTAKQVQEMLGIGKGSPNPQQQPGQPG RPGQNPQAAPVPPGSRFLQPVSKCDMNLTDLIGELQKDPWPVHQGKRPLRSTGAALSIAVGLLECTYPNTGGRI MIFLGGPCSQGPGQVLNDDLKQPIRSHHDIHKDNAKYMKKAIKHYDHLAMRAATNSHCIDIYSCALDQTGLMEMK QCCNSTGGHMVMGDSFNSSLFKQTFQRVFSKDPKNDLKMAFNATLEVKCSRELKVQGGIGSCVSLNVKSPLVSD TELGMGNTVQWKLCTLAPSSTVALFFEVVNQHSAPIPQGGRGCIQLITQYQHASGQRRIRVTTIARNWADATANIH HISAGFDQEAAAVVMARMAGYKAESDETPDVLRWVDRMLIRLCQKFGEYNKDDPNSFRLGENFSLYPQFMYHLR RSQFLQVFNNSPDETSFYRHMLMREDLTQSLIMIQPILYSYSFNGPPEPVLLDTSSIQPDRILLMDTFFQILIFHGETI AQW PC014 255 SEQ ID NO: 256 (frame +3) DVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEKQVELQKKIQSSNMLNQARLK VLKVREDHVRAVLEDARKSLGEVTKDQGKYSQILESLILQGLFQLFEKEVTVRVRPQDRDLVRSILPNVAAKYKDA TGKDILLKVDDESHLSQEITGGVDLLAQKNKIKISNTMEARLDLIA PC016 257 SEQ ID NO: 258 (frame +2) LVILEDVKFPKFNEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGIDAKNTVCEFTGDILRTPVSEDMLGRVFN GSGKPIDKGPPILAEDYLDIQGQPINPWSRIYPEEMIQTGITAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGL VKVPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTAAEFLAYQ CEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMP PC027 259 SEQ ID NO: 260 (frame +1) QANLKVLPEGAEIRDGERLPVTVKDMGACEIYPQTIQHNPNGRFVVVCGDGEYIIYTAMALRNKAFGSAQEFVWA QDSSEYAIRESGSTIRIFKNFKEKKNFKSDFGAEGIYGGFLLGVKSVSGLAFYDWETLELVRRIEIQPRAIYWSDSG KLVCLATEDSYFILSYDSDQVQKARDNNQVAEDGVEAAFDVLGEINESVRTGLWVGDCFIYTNAVNRINYFVGGEL VTIAHLDRPLYVLGYVPRDDRLYLVDKELGVVSYXIAIICTRISDCSHATRLPNG*SSIAFNSK -
TABLE 3-EV cDNA Target SEQ ID ID NO Corresponding amino acid sequence of cDNA clone EV005 513 SEQ ID NO: 514 (frame +3) RCGKKKVWLDPNEITEIANTNSRQNIRKLIKDGLIIKKPVAVHSRARVRKNTEARRKGRHCGFGKRKGTANARMPRK ELWIQRMRVLRRLLKKYREAKKIDRHLYHALYMKAKGNVFKNKRVMMDYIHKKKAEKARTKMLNDQADARRLKVKE ARKRREERIATKKQ EV009 515 SEQ ID NO: 516 (frame +1) PTLDPSIPKYRTEESIIGTNPGMGFRPMPDNNEESTLIWLQGSNKTNYEKWKMNLLSYLDKYYTPGKIEKGNIPVKRC SYGEKLIRGQVCDVDVRKWEPCTPENHFDYLRNAPCIFLKLNRIYGWEPEYYNDPNDLPDDMPQQLKDHIRYNITNP VERNTVWVTCAGENPADVEYLGPVKYYPSFQGFPGYYFPYLNSEGYLSPLLAVQFKRPVSGIVINIECKAWA EV010 517 SEQ ID NO: 518 (frame +3) GGHMVMGDSFNSSLFKQTFQRVFSKDSNGDLKMSFNAILEVKCSRELKVQGGIGPCVSLNVKNPLVSDLEIGMGNT VQWKLCSLSPSTTVALFFEVVNQHAAPIPQGGRGCIQFITQYQHSSGQKKIRVTTIARNWADATANIHHISAGFDEQT AAVLMARIAVYRAETDESSDVLRWVDRMLIRLCQKFGEYNKDDTNSFRLSENFSLYPQFMYHLRRSQFLQVFNNSP DETSFYRHMLMREDRNQ EV015 519 SEQ ID NO: 520 (frame +1) RHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAIIFIDE LDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIHT KNMKLADDVDLEQIAAETHGHVGADLASLCSEAALQQIREKMDLIDLDDEQIDAEVLNSLAVTMENFRYAMSKSSPSA LRETV EV016 521 SEQ ID NO: 522 (frame +2) TVSGVNGPLVILDSVKFPKFNEIVQLKLSDGTVRSGQVLEVSGQKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSED MLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIC RQAGLVKIPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLTLTAAEFM AYQCEKHVLVILTDMSSYAEALREVSAA -
TABLE 3-AG cDNA Target SEQ ID ID NO Corresponding amino acid sequence of cDNA clone AG001 601 SEQ ID NO: 602 (frame +1) HLKRFAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNCEVTKIVMQRLIKVDGKVRTDPNYPAG FMDVITIEKTGEFFRLIYDVKGRFTIHRITAEEAKYKLCKVRKVQTGPKGIPFLVTHDGRTIRYPDPMIKVNDTIQLEIATS KILDFIKFESGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIRDANDHVFATRLNNVFVIGKGSKAFVSLPRGKGVK LSIA AG005 603 SEQ ID NO: 604 (frame +2) VWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVAVHSRARVRKNTEARRKGRHCGFGKRKGTANARMPQKELWIQR MRVLRRLLKKYREAKKIDRHLYHALYMKAKGNVFKNKRVLMEYIHKKKAEKARAKMLADQANARRQKVKQVP*EEG RAYRREEAG AG010 605 SEQ ID NO: 606 (frame +3) GGHMLMGDSFNSSLFKQTFQRVFAKDQNGHLKMAFNGTLEVKCSRELKVQGGIGSCVSLNVKSPLVADTEIGMGN TVQWKMCTFNPSTTMALFFEVVNQHSAPIPQGGRGCIQFITQYQHSSGQRRIRVTTIARNWADASANIHHISAGFDQ ERAAVIMARMAVYRAETDESPDVLRWVDRMLIRLCQKFGEYNKDDQASFRLGENFSLYPQFMYHLRRSQFLQVFNN SPDETSFYRHMLMREDLTQSLIMIQPILYSYSFNGPPEPVLLDTSSIQPDRILLMDTFFQILIFHGETIAQW AG014 607 SEQ ID NO: 608 (frame +3) QIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEKQVELQKKIQSSNMLNQARLKVLKVRE DHVRAVLDEARKKLGEVTRDQGKYAQILESLILQGLYQLFEANVTVRVRPQDRTLVQSVLPTIATKYRDVTGRDVHLS IDDETQLSESVTGGIELLCKQNKIKVCNTLEARLDLISQQLVPQIRNALFGRNINRKF AG016 609 SEQ ID NO: 610 (frame +1) -
TABLE 3-TC Target cDNA SEQ ID ID NO Corresponding amino acid sequence of cDNA clone TC001 793 SEQ ID NO: 794 (frame +1) GPKKHLKRLNAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNSEVTKIVMQRLIKVDGKVRTD PNYPAGFMDVVTIEKTGEFFRLIYDVKGRFTIHRITGEEAKYKLCKVKKVQTGPKGIPFLVTRDGRTIRYPDPMIKVN DTIQLEIATSKILDFIKFESGNLCMITGGRNLGRVGTVVSRERHPGSFDIVHIKDANGHTFATRLNNVFIIGKGSKPYV SLPRGKGVKLSI TC002 795 SEQ ID NO: 796 (frame +1) QEFLEAKIDQEILTAKKNASKNKRAAIQAIKRKKRYEKQLQQIDGTLSTIEMQREALEGANTNTAVLKTMKNAADAL KNAHLNMDVDEVHDMMDDI TC010 797 SEQ ID NO: 798 (frame +3) PEVLVFGHVLVLEVPPLGDCLTVENQNLEKCVHEKDPIGLNGTSVEEDGFRGAVETITVQNRLDHNETLGEVLPH QHVAVERGLVWGVVENLEELGAAQMVHELGIETEVFTQTETVRVVFVVFAEF TC014 799 SEQ ID NO: 800 (frame +1) EKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEKPVELQKKIQSSNMLNQARLKVLKVREDHVHNVLDDARK RLGEITNDQARYSQLLESLILQSLYQYLGISDELFENNIVVRVRQQDRSIIQGILPVVATKYRDATGKDVHLKIDDES HLPSETTGGVVLYAQKGKIKIDNTLEARLDLIAQQLVPEIRTALFGRNINRKF TC015 801 SEQ ID NO: 802 (frame +2) DELQLFRGDTVLLKGKRRKETVCIVLADENCPDEKIRMNRIVRNNLRVRLSDVVWIQPCPDVKYGKRIHVLPIDDTV EGLVGNLFEVYLKPYFLEAYRPIHKGDVFIVRGGMRAVEFKVVETEPSPYCIVAPDTVIHCDGDPIKREEEEEALNA VGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL AGESESNLRKAFEEADKNSPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPA LRRFGRFD -
TABLE 3-MP cDNA Target SEQ ID ID NO Corresponding amino acid sequence of cDNA clone MP001 888 SEQ ID NO: 889 (frame +1) GPKKHLKRLNAPKAWMLDKSGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALTGAEVTKIVMQRLIKVDGKVRTDPN YPAGFMDVISIQKTSEHFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVQTGPKGVPFLTTHDGRTIRYPDPNIKVNDTIR YDIASSKILDHIRFETGNLCMITGGRNLGRVGIVTNRERHPGSFDIVHIKDANEHIFATRMNNVFIIGKGQKNYISLPRSK GVKLT MP002 890 SEQ ID NO: 891 (frame +2) SFFSKVFGGKKEEKGPSTEDAIQKLRSTEEMLIKKQEFLEKKIEQEVAIAKKNGTTNKRAALQALKRKKRYEQQLAQID GTMLTIEQQREALEGANTNTAVLTTMKTAADALKSAHQNMNVDDVHDLMDDI MP010 892 SEQ ID NO: 893 (frame +3) GCIQFITQYQHSSGYKRIRVTTLARNWADPVQNMMHVSAAFDQEASAVLMARMVVNRAETEDSPDVMRWADRTLI RLCQKFGDYQKDDPNSFRLPENFSLYPQFMYHLRRSQFLQVFNNSPDETSYYRHMLMREDVTQSLIMIQPILYSYSF NGRPEPVLLDTSSIQPDKILLMDTFFHILIFHGETIAQWRAMDYQNRPEYSNLKQLLQAPVDDAQEILKTRFPMPRYID TEQGGSQARFLLCKVNPSQTHNNMYAYGG*WWSTSFDR*CKLAAVHGAAA MP016 894 SEQ ID NO: 895 (frame +1) VSEDMLGRVFNGSGKPIDKGPPILAEDYLDIEGQPINPYSRTYPQEMIQTGISAIDIMNSIARGQKIPIFSAAGLPHNEIA AQICRQAGLVKKPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALT AAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPN DDITHPI MP027 896 SEQ ID NO: 897 (frame +3) PITKTRRVFRH*KAMLKIFLLVCFHPELPIVLTGSEDGTVRIWHSGTYRLESSLNYGLERVWTICCLRGSNNVALGYDE GSIMVKVGREEPAMSMDVHGGKIVWARHSEIQQANLKAMLQAEGAEIKDGERLPIQVKDMGSCEIYPQSISHNPNG RFLVVCGDGEYIIYTSMALRNKAFGSAQDFVWSSDSEYAIRENSSTIKVFKNFKEKKSFKPEGGADGIFGGYLLGVKS VTGLALYDWENGNLVRRIETQPKHVFWSESGELVCLATDEAYFILRFDVNVLSAARASNYEAASPDGLEDAFEILGEV QEVVKTGLWVGDCFIYTNGVNRINYYVGGEVVTVS -
TABLE 3-NL cDNA SEQ Target ID ID NO Corresponding amino acid sequence of cDNA clone NL001 1071 SEQ ID NO: 1072 (frame +2) KSWMLDKLGGVYAPRPSTGPHKLRESLPLVIFLRNRLKYALTNCEVKKIVMQRLIKVDGKVRTDPNYPAGFMDVVQIEK TNEFFRLIYDVKGRFTIHRITAEEAKYKLCKVKRVQTGPKGIPFLTTHDGRTIRYPDPLVKVNDTIQLDIATSKIMDFIRFDS GNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDVLGHTFATRLNNVFIIGKGSKAYVSLPKGKGVKLS NL002 1073 SEQ ID NO: 1074 (frame +1) DEKGPTTGEAIQKLRETEEMLIKKQDFLEKKIEVEIGVARKNGTKNKRAAIQALKRKKRYEKQLQQIDGTLSTIEMQREAL EGANTNTAVLQTMKNAADALKAAHQHMDVDQ NL003 1075 SEQ ID NO: 1076 (frame +2) PRRPYEKARLEQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLEEKDQKRLFEGNALLRRLVRIGVLDEGRMKLD YVLGLKIEDFLERRLQTQVYKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRV NL004 1077 SEQ ID NO: 1078 (frame +1) KELAAVRTVCSHIENMLKGVTKGFLYKMRAVYAHFPINCVTTENNSVIEVRNFLGEKYIRRVRMAPGVTVTNSTKQKDEL IVEGNSIEDVSRSAALIQQSTTVKNKDIRKFLD NL005 1079 SEQ ID NO: 1080 (frame +1) LDPNEINEIANTNSRQSIRKLIKDGLIIKKPVAVHSRARVRKNTEARRKGRHCGFGKRKGTANARMPQKVLWVNRMRVL RRLLKKYRQDKKIDRHLYHHLYMKAKGNVFKNKRVLMEFIHKKKAEKARMKMLNDQAEARRQKVKEAKKRRE NL006 1081 SEQ ID NO: 1082 (frame +3) VLVSSGVVEYIDTLEEETTMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAM GVYITNFHVRMDTLAHVLFYPHKPLVTTRSMEYLRFRELPAGINSVVAIACYTGYNQEDSVILNASAVERGFFRSVFFRS YKDAESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPDNDDELEGTTKRFTKRDAS TFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTSEGIAPDIIINPHAIPSR MTIGHLIECLQGKVSSNKGEIGDATPFN NL007 1083 SEQ ID NO: 1084 (frame +2) FRDFLLKPEILRAILDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQIEPTDNQVSVLVMCHTRELA FQISKEYERFSKCMPNIKVGVFFGGLPIQRDEETLKLNCPHIVVGTPGRILALVRNKKLDLKHLKHFVLDECDKMLELLDM RRDVQEIFRNTPHSKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDILE FNQVVIFVKSVQRCMALSQLLTEQNFPAVAIHRGMTQEERLKKYQEFKEFLKRILVATNLFGRGMDIERVNIVFNYDMP NL008 1085 SEQ ID NO: 1086 (frame +1) GRIENQKRVVGVLLGCWRPGGVLDVSNSFAVPFDEDDKEKNVWFLDHDYLENMFGMFKKVNAREKVVGWYHTGPKL HQNDVAINELIRRYCPNCVLVIIDAKPKDLGLPTEAYRVVEEIHDDGSPTSKTFEHVMSEIGAEEAEEIGVEHLLRDIKDTT VGSLSQRVTNQLMGLKGLHLQLQDMRDYLNQVVEGKLPMNHQIVYQLQDIFNLLPDIGHGNFVDSLY NL009 1087 SEQ ID NO: 1088 (frame +1) CDYDRPPGRGQVCDVDVKNWFPCTSENNFNYHQSSPCVFLKLNKIIGWQPEYYNETEGFPDNMPGDLKRHIAQQKSI NKLFMQTIWITCEGEGPLDKENAGEIQYIPRQGFPGYFYPYTNA NL010 1089 SEQ ID NO: 1090 (amino terminus end) (frame +2) SSRLEATRLVVPVGCLYQPLKERPDLPPVQYDPVLCTRNTCRAILNPLCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQ HQPAELIPSFSTIEYIITRAQTMPPMFVLVVDTCLDDEELGALKDSLQMSLSLLPPNALIGLITFGKMVQVHELGCDGCSK SYVFRGVKDLTAKQIQDMLGIGKMAAAPQPMQQRIPGAAPSAPVNRFLQPVGKCDMSLTDLLGELQRDPWNVAQGKR PLRSTGVALSIAVGLLECT 1115 SEQ ID NO: 1116 (carboxy terminus end) (frame +3) LNVKGSCVSDTDIGLGGTSQWKMCAFTPHTTCAFFFEVVNQHAAPIPQGGRGCIQFITQYQHSSGQRRIRVTTIARNWA DASTNLAHISAGFDQEAGAVLMARMVVHRAETDDGPDVMRWADRMLIRLCQRFGEYSKDDPNSFRLPENFTLYPQFM YHLRRSQFLQVFNNSPDETSYYRHILMREDLTQSLIMIQPILYSYSFNGPPEPVLLDTSSIQPDRILLMDTFFQILIFHGETIA NL011 1091 SEQ ID NO: 1092 (frame +2) DGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGVIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRV TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAKKLIGDPNLEFV AMPALLPPEVTMDPQX NL012 1093 SEQ ID NO: 1094 (frame +2) QQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRADALQQGASQFEQQAGKLKRKF NL013 1095 SEQ ID NO: 1096 (frame +2) AEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGR PEMVVGWYHSHPGFGCWLSGVDINTQESFEQLSKRAVAVVV NL014 1097 SEQ ID NO: 1098 (frame +2) FIEQEANEKAEEIDAKAEEEFNIEKGRLVQHQRLKIMEYYDRKEKQVELQKKIQSSNMLNQARLKALKVREDHVRSVLEE SRKRLGEVTRNPAKYKEVLQYLIVQGLLQLLESNVVLRVR EADVSLIEGIVGSCAEQYAKMTGKEVVVKLDADNFLAAETCGGVELFARNGRIKIPNTLESRLDLISQQLVPEIRVALF NL015 1099 SEQ ID NO: 1100 (frame +1) IVLSDETCPFEKIRMNRVVRKNLRVRLSDIVSIQPCPDVKYGKRIHVLPIDDTVEGLTGNLFEVYLKPYFLEAYRPIHKDDA FIVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGDPIKREDEEDAANAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFK AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNAPAIIFIDELDAIAPKRE KTHGEVERRIVSQLLTLMDGLKQSSHVIVMAATNRPNSIDAALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLADDVD LEX NL016 1101 SEQ ID NO: 1102 (frame +2) TPVSEDMLGRVFNGSGKPIDKGPPILAEDYLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIA AQICRQAGLVKLPGKSVLDDSEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTAAE FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSIT NL018 1103 SEQ ID NO: 1104 (frame +2) MQMPVPRPQIESTQQFIRSEKTTYSNGFTTIEEDFKVDTFEYRLLREVSFRESLIRNYLHEADMQMSTVVDRALGPPSAP HIQQKPRNSKIQEGGDAVFSIKLSANPKPRLVWFKNGQRIGQTQKHQASYSNQTATLKVNKVSAQDSGHYTLLAENPQ GCTVSSAYLAVESAGTQDTGYSEQYSRQEVETTEAVDSSKMLAPNFVRVPADRDASEGKMTRFDCRVTGRPYPDVA WFINGQQVADDATHKILVNESGNHSLMITGVTRLDHGVVGCIARNKAGETSFQCNLNVIEKELVVAPKFVERFAQVNVK EGEPVVLSARAVGTPVPRITWQKDGAPIQSGPSVSLFVDGGATSLDIPYAKAS NL019 1105 SEQ ID NO: 1106 (frame +2) DDTYTESYISTIGVDFKIRTIDLDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQESFNNLKQWLEEIDRYAC DNVNKLLVGNKCDQTNKKVVDYTQAKEYADQLGIPFLETSAKNATNVEQAF NL021 1107 SEQ ID NO: 1108 (frame +2) VSLNSVTDISTTFILKPQENVKITLEGAQACFISHERLVISLKGGELYVLTLYSDSMRSVRSFHLEKAAASVLTTCICVCEE NYLFLGSRLGNSLLLRFTEKELNLIEPRAIESSQSQNPAKKKKLDTLGDWMASDVTEIRDLDELEVYGSETQTSMQIASYIF NL022 1109 SEQ ID NO: 1110 (frame +2) TLHREFLSEPDLQSYSVMIIDEAHERTLHTDILFGLVKDVARFRPDLKLLISSATLDAQKFSEFFDDAPIFRIPGRRFPVDIY YTKAPEADYVDACVVSILQIHATQPLGDILVFLTGQEEIETCQELLQDRVRRLGPRIKELLILPVYSNLPSDMQAKIFLPTPP NARKVVLATNIAETSLTIDNIIYVIDPGFCKQNNFNSRTGMESLVVVPVSKASANQRAGRAGRVAAGKCFRLYT NL023 1111 SEQ ID NO: 1112 (frame +2) RSFSQERQHEEMKESSGRMHHSDPLIVETHSGHVRGISKTVLGREVHVFTGIPFAKPPIGPLRFRKPVPVDPWHGVLDA TALPNSCYQERYEYFPGFEGEEMWNPNTNLSEDCLYLNIWVPHRLRIRHRANSEENKPRAKVPVLIWIYGGGYMSGTA TLDVYDADMVAATSDVIVASMQYRVGAFGFLYLAQDLPRGSEEAPGNMGLWDQALAIRWLKDNIAAFGGDPELMTLFG ESAGGGSVSIHLVSPITRGLARRGIMQSGTMNAPWSFMTAERATEIAKTLIDDCGCNSSLLTDAPSRVMSCMRSVEAKII SVQQWNSYSGILGLPSAPTIDGIFLPKHPLDLLKEGDFQDTEILIGSNQDEGTYFILYDFIDFFQKDGPSFLQRDKFLDIINT IFKNMTKIEREAIIFQYTDWEHVMDGYLNQKMIGDVVGDYFFICPTNHFAQAFAEHGKKVYYYFFTQRTSTSLWGEWMG VMHGDEIEYVFGHPLNMSLQFNARERDLSLRIMQAYSRFALTGKPVPDDVNWPIYSKDQPQYYIFNAETSGTGRGPRA TACAF NL027 1113 SEQ ID NO: 1114 (frame +2) PIVLTGSEDGTVRIWHSGTYRLESSLNYGLERVWTICCMRGSNNVALGYDEGSIMVKVGREEPAISMDVNGEKIVWARH SEIQQVNLKAMPEGVEIKDGERLPVAVKDMGSCEIYPQTIAHNPNGRFLVVCGDGEYIIHTSMVLRNKAFGSAQEFIWG QDSSEYAIREGTSTVKVFKNFKEKKSFKPEFGAESIFGGYLLGVCSLSGLALYDWETLELVRRIEIQPKHVYWSESGELV ALATDDSYFVLRYDAQAVLAARDAGDDAVTPDGVEDAFEVLGEVHETVKTGLWVGDCFIYT -
TABLE 3-CS Target cDNA ID SEQ ID NO Corresponding amino acid sequence of cDNA clone CS001 1682 SEQ ID NO: 1683 (frame +1) KAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKNVPYLVTHDGRTVRYPDPLIKVNDSIQLDIATSK IMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIRDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGVR LT CS002 1684 SEQ ID NO: 1685 (frame +1) SFFSKVFGGKKEEKGPSTHEAIQKLRETEELLQKKQEFLERKIDTELQTARKHGTKNKRAAIAALKRKKRYEKQLT QIDGTLTQIEAQREALEGANTNTQVLNTMRDAATAMRLAHKDIDVDKVHDLMDDI CS003 1686 SEQ ID NO: 1687 (frame +1) GLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQ TQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRP CS006 1688 SEQ ID NO: 1689 (frame +1) TCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTSRRYSKRDASTFLRNSETGIVDQVMLTL NSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQGK VSSNKGEIGDATPFNDAVNVQKI CS007 1690 SEQ ID NO: 1691 (frame +3) SEISCWNQRFWGLSSIAVSSTLQKFNMNVFPKLFWEWIFFVKAKSGMGKTAVFVLATLQQLEPSENHVYVLVMC HTRELAFQISKEYERFSKYMAGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNNKKLNLKHLKHFILD ECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKL KENEKNKKLFELLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATN LFGRGMDIERVNIVFNYDMP CS009 1692 SEQ ID NO: 1693 (frame +1) LVAICIWTFLQRLDSREPMWQLDESIIGTNPGLGFRPTPPEVASSVIWYKGNDPNSQQFWVQETSNFLTAYKRD GKKAGAGQNIHNCDFKLPPPAGKVCDVDISAWSPCVEDKHFGYHKSTPCIFLKLNKIFGWRPHFYNSSDSLPTD MPDDLKEHIRNMTAYDKNYLNMVWVSCEGENP CS011 1694 SEQ ID NO: 1695 (frame +1) GSGKTTFVKRHLTGEFEKRYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT SRVTYKNVPNWHRDLVRVCEGIPIVLCGNKVDIKDRKVKAKTIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI GDGNLEFVAMQPCFH CS013 1696 SEQ ID NO: 1697 (frame +2) DAPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQTGTGVSVEAVDPVFQA KMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKG CS014 1698 SEQ ID NO: 1699 (frame +2) QKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEKQVELQKKIQSSNMLNQARLKV LKVREDHVRNVLDEARKRLAEVPKDVKLYTDLLVTLVVQALFQLMEPTVTVRVRQADVSLVQSILGKAQQDYKA KIKKDVQLKIDTENSLPADTCGGVELIAARGRIKISNTLESRLELIAQQLLPEIRTALF CS015 1700 SEQ ID NO: 1701 (frame +1) IVLSDDNCPDEKIRMNRVVRNNLRVRLSDIVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPI HRDDTFMVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGDPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMV ELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKN SPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGMKKSSHVIVMAATNRPNSIDPAL CS016 1702 SEQ ID NO: 1703(frame −3) TPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLP HNEIAAQICRQAGLVKIPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERII TPRLALTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSI TQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYAC YAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFITQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASI CS018 1704 SEQ ID NO: 1705 (frame +2) SVYIQPEGVPVPAQQSQQQQSYRHVSESVEHKSYGTQGYTTSEQTKQTQKVAYTNGSDYSSTDDFKVDTFEY RLLREVSFRESITKRYIGETDIQISTEVDKSLGVVTPPKIAQKPRNSKLQEGADAQFQVQLSGNPRPRVSWFKNG QRIVNSNKHEIVTTHNQTILRVRNTQKSDTGNYTLLAENPNGCVVTSAYLAVESPQETYGQDHKSQYIMDNQQT AVEERVEVNEKALAPQFVRVCQDRDVTEGKMTRFDCRVTGRPYPEVTWFINDRQIRDDYXHKILVNESCNHAL MITNVDLSDSGVVSCIARNKTGETSFQCRLNVIEKEQVVAPKFVERFSTLNVREGEPVQLHARAVGTPTPRITWQ KDGVQVIPNPELRINTEGGASTLDIPRAKASDAGWYRC -
TABLE 3-PX cDNA Target SEQ ID ID NO Corresponding amino acid sequence of cDNA clone PX001 2100 SEQ ID NO: 2101 (frame +1) GPKKHLKRLNAPRAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLQPPQVRAQRQRGAEDREAAPHQGGRQGPH RPHLPGWIHGCCVD*KDQ*AVPSDLRCEGTLHHPPHHSRGGQVQAVQGEARGDGPQERAVHRDAQRPHAALPRP AHQGQRLHPARHRHLQDHGHHQVRLR*PVHDHGRA*LGASGHHRVPREAPRELRHRPHQGHHRTHLRHQVEQRV HHRQGHE PX009 2102 SEQ ID NO: 2103 (frame +3) TLIWYKGTGYDSYKYWENQLIDFLSVYKKKGQTAGAGQNIFNCDFRNPPPHGKVCDVDIRGWEPCIDENHFSFHKS SPCIFLKLNKIYGWRPEFYNDTANLPEAMPVDLQTHIRNITAFNRDYANMVWVSCHGETPADKENIGPVRYLPYPGFP GYFYPYENAEGYLSPLVAVHLERPRTGIVINIECKAWA PX010 2104 SEQ ID NO: 2105 (frame +3) GCIQFITQYQHSSGQRRVRVTTVARNWGDAAANLHHISAGFDQEAAAVVMARLVVYRAEQEDGPDVLRWLDRMLIR LCQKFGEYAKDDPNSFRLSENFSLYPQFMYHLRRSQFLQVFNNSPDETTFYRHMLMREDLTQSLIMIQPILYSYSFG GAPEPVLLDTSSIQPDRILLMDTFFQILIYHGETMAQWRALRYQDMAEYENFKQLLRAPVDDAQEILQTRFPVPRYIDT EHGGSQARFLLSKVNPSQTHNNMYAYGGAMPIPSADGGAPVLTDDVSLQVFMEQP PX015 2106 SEQ ID NO: 2107 (frame +3) RKETVCIVLSDDNCPDEKIRMNRVVRNNLRVRLSDIVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEA YRPIHRDDTFMVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMV ELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEADKNSPAI ILIDELDAI PX016 2108 SEQ ID NO: 2109 (frame +2) FTGDILRTPVSEDMLGRIFNGSGKPIDKGPPILAEEYLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSA AGLPHNEIAAQICRQAGLVKVPGKSVLDDHEDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIE RIITPRLALTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSIT QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIG KDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFITQGSYENRTVFESLDIGWQPLRIFPKEM -
TABLE 3-AD cDNA Target SEQ ID ID NO Corresponding amino acid sequence of cDNA clone AD001 2364 SEQ ID NO: 2365 (frame +1) GPKKHLKRLNAPKAWMLDKLGGVFAPRPSTGPHKLRECLPLVIFLRNRLKYALTNCEVTKIVMQRLIKVDGKVRTDPN YPAGFMDVVTIEKTGEFFRLVYDVKGRFTIHRISAEEAKYKLCKVRRVQTGPKGIPFLVTHDGRTIRYPDPVIKVNDSI QLDIATCKIMDHIRFESGNLCMITGGRNLGRVGTVVSRERHPGSFDIVHIKDTQGHTFATRLNNVFIIGKATKPYISLPK GKGVKLSIAEERDK AD002 2366 SEQ ID NO: 2367 (frame +2) SFFSKVFGGKKDGKAPTTGEAIQKLRETEEMLIKKQEFLEKKIEQEINVAKKNGTKNKRAAIQALKRKKRYEKQLQQID GTLSTIEMQREALEGANTNTAVLQTMKSAADALKAAHQHMDVDKVHDLMDDI AD009 2368 SEQ ID NO: 2369 (frame +3) VLAALVAVCLWVFFQTLDPRIPTWQLDSSIIGTSPGLGFRPMPEDSNVESTLIWYRGTDRDDFRQWTDTLDEFLAVY KTPGLTPGRGQNIHNCDYDKPPKKGQVCNVDIKNWHPCIQENHYNYHKSSPCIFIKLNKIYNWIPEYYNESTNLPEQM PEDLKQYIHNLESNNSREMNTVWVSCEGENP AD015 2370 SEQ ID NO: 2371 (frame +2) DELQLFRGDTVLLKGKRRKETVCIVLSDDTCPDGKIRMNRVVRNNLRVRLSDVVSVQPCPDVKYGKRIHVLPIDDTVE GLTGNLFEVYLKPYFLEAYRPIHKDDAFIVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGDPIKREEEEEALNAVGY DDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE SNLRKAFEEADKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQSSHVIVMAATNRPNSIDGALRRFGRF DREIDIGIPDATGRLEILRIHTKNMKLADDVDLEQIAAESHG AD016 2372 SEQ ID NO: 2373 (frame +2) FTGDILRVPVSEDMLGRTFNGSGIPIDGGPPIVAETYLDVQGMPINPQTRIYPEEMIQTGISTIDVMTSIARGQKIPIFSG AGLPHNEIAAQICRQAGLVQHKENKDDFAIVFAAMGVNMETARFFKREFAQTGACNVVLFLNLANDPTIERIITPRLAL TVAEFLAYQCNKHVLVIMTDMTSYAEALREVSAAREEVPGRRGFPGYMYTDLSTIYERAGRVQGRPGSITQIPILTMP NDDITHPI -
TABLE 4-LD Target ID SEQ ID NO Sequences* Example Gi-number and species LD001 49 GGCCCCAAGAAGC 3101175 (Drosophila melanogaster), 92477283 (Drosophila ATTTGAAGCGTTT erecta) LD001 50 AATGCCCCAAAAGCAT 70909480 (Carabus granulatus), 77325294 (Chironomus tentans), GGATGTTGGATAAA 900945 (Ctenocephalides felis), 60297219 (Diaprepes TTGGGAGGTGT abbreviatus), 37951951 (Ips pini), 75735533 (Tribolium castaneum), 22039624 (Ctenocephalides felis) LD001 51 GAAGTTACTAAG 33368080 (Glossina morsitans) ATTGTTATGCA LD001 52 ATTGAAAAAACTGG 60297219 (Diaprepes abbreviatus) TGAATTTTTCCG LD001 53 ACACACGACGGCC 27555937 (Anopheles gambiae), 33355008 (Drosophila yakuba), GCACCATCCGCT 22474232 (Helicoverpa armigera), 3738704 (Manduca sexta) LD001 54 ACACACGACGGCC 92477283 (Drosophila erecta) GCACCATCCGCTA LD001 55 CCCAAGAAGCATTT 92954810 (Drosophila ananassae), 92231605 ( Drosophila GAAGCGTTTG willistoni) LD002 56 GCAATGTCATCCAT 17861597 (Drosophila melanogaster), 92223378 ( Drosophila CATGTCGTG willistoni), 92471309 (Drosophila erecta) LD003 57 CAGGTTCTTCCTCTT 24975810 (Anopheles gambiae), 3478578 (Antheraea yamamai), GACGCGTCCAGG 42764756 (Armigeres subalbatus), 24661714 (Drosophila melanogaster), 68267151 (Drosophila simulans), 33355000 (Drosophila yakuba), 49532931 (Plutella xylostella), 76552910 (Spodoptera frugiperda), 92959651 (Drosophila ananassae), 92467993 (Drosophila erecta) LD003 58 TTGAGCGAGAAGTC 49558930 (Boophilus microplus) AATATGCTTCT LD003 59 TTCCAAGAAATCTTC 62238687 (Diabrotica virgifera), 76169907 (Diploptera punctata), AATCTTCAAACCCAA 67872253 (Drosophila pseudoobscura), 55877642 (Locusta migratoria), 66548956 (Apis mellifera) LD003 60 TTCATCCAACACTCC 22040140 (Ctenocephalides felis) AATACG LD003 61 AAGAGCATTGCCTTC 2459311 (Antheraea yamamai) AAACAACCT LD003 62 AGTTCTCTGGCAGCTT 76169907 (Diploptera punctata) TACGGATTTT LD003 63 CCACACTTCACGTTTG 57963694 (Heliconius melpomene) TTCCT LD003 64 CCGTATGAAGCTTGATT 108742527 (Gryllus rubens), 108742525 (Gryllus pennsylvanicus), ACGT 108742523 (Gryllus veletis), 108742521 (Gryllus bimaculatus), 108742519 (Gryllus firmus), 109194897 (Myzus persicae) LD003 65 AGGAACAAACGTGAA 109194897 (Myzus persicae) GTGTGGCG LD006 66 AGCGCTATGGGTAAG 27819970 (Drosophila melanogaster) CAAGCTATGGG LD006 67 TGTTATACTGGTTATAA 55801622 (Acyrthosiphon pisum), 66535130 (Apis mellifera) TCAAGAAGAT LD007 68 GAAGTTCAGCACGAAT 50563603 (Homalodisca coagulata) GTATTCC LD007 69 CAAGCAAGTGATGATG 50563603 (Homalodisca coagulata) TTCAGTGCCAC LD007 70 TGCAAGAAATTCATGC 21068658 (Chironomus tentans) AAGATCC LD007 71 AAATGAAAAGAAT 49201437 (Drosophila melanogaster) AAAAAATT LD007 72 CAGAATTTCCCAGCC 67895225 (Drosophila pseudoobscura) ATAGGAAT LD007 73 AGCAGTTCAAAGATTT 77848709 (Aedes aegypti) CCAGAAG LD007 74 TTCCAAATCAGCAAAG 91083250 (Tribolium castaneum) AGTACGAG LD010 75 TACCCGCAGTTCATGT 29558345 (Bombyx mori) ACCAT LD010 76 CAGTCGCTGATCATG 49559866 (Boophilus microplus) ATCCAGCC LD010 77 CTCATGGACACGTT 60293559 (Homalodisca coagulata) CTTCCAGAT LD010 78 GGGGCTGCATACAG 92971011 (Drosophila mojavensis) TTCATCAC LD010 79 CCCGCAGTTCATGT 92952825 (Drosophila ananassae) ACCATTTG LD010 80 GACAATGCCAAATA 92921253 (Drosophila virilis) CATGAAGAA LD010 81 TTCGATCAGGAGG 92921253 (Drosophila virilis) CAGCCGCAGTG LD011 82 AGCAGGGCTGGC 28317118 (Drosophila melanogaster) ATGGCGACAAA LD011 83 TTCTCAAAGTTGTA 37951963 (Ips pini) GTTAGATTTGGC LD011 84 TACTGCAAATTCTT 55883846 (Locusta migratoria) CTTCCTATG LD011 85 GGTACATTCTTGTA 67885713 (Drosophila pseudoobscura) TGTAACTC LD011 86 TCAAACATGATAAT 68771114 (Acanthoscurria gomesiana) AGCACACTG LD011 87 TCTCCTGACCGGC 17944197 (Drosophila melanogaster), 77843537 (Aedes aegypti), AGTGTCCCATA 94469127 (Aedes aegypti), 24664595 (Drosophila melanogaster) LD011 88 GCTACTTTGGGAG 101410627 (Plodia interpuntella) TTGAAGTCCATCC LD011 89 TAACTACAACTTT 90813103 (Nasonia vitripennis) GAGAAGCCTTTCCT LD011 90 AAGTTTGGTGGT 84267747 (Aedes aegypti) CTCCGTGATGG LD014 91 GCAGATCAAGCA 9732 (Manduca sexta), 90814338 (Nasonia vitripennis), 87266590 TATGATGGC (Choristoneura fumiferana) LD014 92 ATCAAGCATATGAT 75470953 (Tribolium castaneum), 76169390 (Diploptera punctata) GGCTTTCATTGA LD014 93 AATATTGAAAAGGGG 78055682 (Heliconius erato) CGCCTTGT LD014 94 CAACGTCTCAAGATT 37659584 (Bombyx mori) ATGGAATA LD014 95 ATTATGGAATATTAT 66556286 (Apis mellifera) GAGAAGAAAGA LD014 96 AACAAAATCAAGAT 25958976 (Curculio glandium) CAGCAATACT LD016 97 ATGTCGTCGTTGGG 27372076 (Spodoptera littoralis) CATAGTCA LD016 98 GTAGCTAAATCGGT 27372076 (Spodoptera littoralis), 55797015 (Acyrthosiphon GTACATGTAACCTGGG pisum), 73615307 (Aphis gossypii), 4680479 (Aedes aegypti), AAACCACGACG 9713 (Manduca sexta), 76555122 (Spodoptera frugiperda), 237458 (Heliothis virescens), 53883819 (Plutella xylostella), 22038926 (Ctenocephalides felis), 101403557 (Plodia interpuntella), 92969578 (Drosophila grimshawi), 91829127 (Bombyx mori) LD016 99 GCAGATACCTCACGC 62239897 (Diabrotica virgifera) AAAGCTTC LD016 100 GGATCGTTGGCCAAA 67882712 (Drosophila pseudoobscura), 92985459 (Drosophila TTCAAGAACAGGCA grimshawi) LD016 101 TTCTCCATAGAACCGTT 4680479 (Aedes aegypti), 27372076 (Spodoptera littoralis) CTCTTCGAAATCCTG LD016 102 GCTGTTTCCATGTTAAC 49558344 (Boophilus microplus) ACCCAT LD016 103 TCCATGTTAACACCCAT 62238871 (Diabrotica virgifera) AGCAGCGA LD016 104 CTACAGATCTGGGCAG 22038926 (Ctenocephalides felis), 16898595 (Ctenocephalides CAATTTCATTGTG felis) LD016 105 GGCAGACCAGCTGCA 22038926 (Ctenocephalides felis), 16898595 (Ctenocephalides GAGAAAAT felis) LD016 106 GAGAAAATGGGGATC 4680479 (Aedes aegypti), 9713 (Manduca sexta), TTCTGACCACGAGCA 22038926 (Ctenocephalides felis), 16898595 (Ctenocephalides ATGGAGTTCATCACGTC felis), 67877903 (Drosophila pseudoobscura), 10763875 (Manduca sexta), 76554661 (Spodoptera frugiperda), 77905105 (Aedes aegypti), 50562965 (Homalodisca coagulata), 27372076 (Spodoptera littoralis) LD016 107 ATGGAGTTCATCACGT 9713 (Manduca sexta), 237458 (Heliothis virescens), CAATAGC 76554661 (Spodoptera frugiperda), 22474331 (Helicoverpa armigera) LD016 108 GTCTGGATCATTTCCT 16898595 (Ctenocephalides felis), CAGGATAGATACGG 22038926 (Ctenocephalides felis), GACCACGGATTGAT 50562965 (Homalodisca coagulata), TGGTTGACCCTGGA 49395165 (Drosophila melanogaster), TGTCCAAGAAGTCTT 6901845 (Bombyx mori), 92931000 (Drosophila virilis) CAGCCAAAATTGGGG GACCTTTGTC LD016 109 ATTGGGGGACCTTTGT 10763875 (Manduca sexta) CGATGGG LD016 110 ATGGGTTTTCCTGAT 49395165 (Drosophila melanogaster), CCATTGAAAACACGTCCC 55905051 (Locusta migratoria) AACATATCTTCAGAAA CAGGAGTCCTCAAAA TATCTCCTGTGAATTC ACAAGCGGTGTTTTT GGCGTCGATTCCTGA TGTGCCCTCGAACAC TTGAACCACAGCTTT LD016 111 ACAGCTTTTGACCCAC 21642266 (Amblyomma variegatum) TGACTTCCAG LD016 112 GACCCACTGACTTCCA 49395165 (Drosophila melanogaster) GAACTTGTCCCGAA CGTATAGTGCCATCA GCCAGTTTGAGT LD016 113 GGACCGTTCACACCAG 24646342 (Drosophila melanogaster) ACACAGT LD016 114 GACTGTGTCTGGTGTG 103769163 (Drosophila melanogaster), 92048971 (Drosophila AACGGTCCTCT willistoni) LD016 115 TTCTCTTCGAAATCCTG 84116133 (Dermatophagoides farinae) TTTGAA LD016 116 GACTGTGTVTGGTGTG 24646342 (Drosophila melanogaster) AACGGTCC LD016 117 GGTCGTCGTGGTTT 92231646 (Drosophila willistoni), 91755555 (Bombyx mori), CCCAGGTTACATGTAC 84228226 (Aedes aegypti) ACCGATTT LD016 118 TGACAGCTGCCGAA 92231646 (Drosophila willistoni) TTCTTGGC LD018 119 CAAGTCACCGACGA 91080016 (Tribolium castaneum) CCACAACCACAA LD018 120 ATCGCGATTGACGG 91080016 (Tribolium castaneum) TGGAGCC LD027 121 AGACGATCGGTTGG 66501387 (Apis mellifera) TTAAAATC LD027 122 GATATGGGAGCATG 77326476 (Chironomus tentans) TGAAATATA LD027 123 TTAGAGAATTGTTTG 90129719 (Bicyclus anynana) -
TABLE 4-PC Target ID SEQ ID NO Sequence * Example Gi-number and species PC001 275 AAAATTGTCATGCAAAGGTTGAT 37952206 (Ips pini) PC001 276 AAAGCATGGATGTTGGACAAA 98994282 (Antheraea mylitta) 109978109 (Gryllus pennsylvanicus) 55904580 (Locusta migratoria) PC001 277 AAAGCATGGATGTTGGACAAATT 31366663 (Toxoptera citricida) PC001 278 AAAGCATGGATGTTGGACAAATTGGG 60311985 (Papilio dardanus) PC001 279 AAAGCATGGATGTTGGACAAATTGGGGGGTGT 37951951 (Ips pini) PC001 280 AAATACAAGTTGTGTAAAGTAA 84647793 (Myzus persicae) PC001 281 AAGCATGGATGTTGGACAAATTGGGGGGTGT 70909486 (Mycetophagus quadripustulatus) PC001 282 ATGGATGTCATTACTATTGAGAA 25957367 (Carabus granulatus) PC001 283 CATCAAATTTGAATCTGGCAACCT 37952206 (Ips pini) PC001 284 CATGATGGCAGAACCATTCGTTA 60303405 (Julodis onopordi) PC001 285 CCAAAGCATGGATGTTGGACAA 90138164 (Spodoptera frugiperda) PC001 286 CCATTTTTGGTAACACATGATGG 111011915 (Apis mellifera) PC001 287 CCCAAAGCATGGATGTTGGACAA 50565112 (Homalodisca coagulata) PC001 288 CCCAAAGCATGGATGTTGGACAAA 103790417 (Heliconius erato) 101419954 (Plodia interpunctella) PC001 289 CCCAAAGCATGGATGTTGGACAAATT 73612809 (Aphis gossypii) PC001 290 CCCAAAGCATGGATGTTGGACAAATTGGG 77329254 (Chironomus tentans) PC001 291 CCCAAAGCATGGATGTTGGACAAATTGGGGGGTGT 60305420 (Mycetophagus quadripustulatus) PC001 292 CCCAAAGCATGGATGTTGGACAAATTGGGGGGTGTCTTCGC 84647995 (Myzus persicae) PC001 293 CGTTACCCTGACCCCAACATCAA 73613065 (Aphis gossypii) PC001 294 GCAAAATACAAGTTGTGTAAAGTAA 83662334 (Myzus persicae) PC001 295 GCATGGATGTTGGACAAATTGGG 92969396 (Drosophila grimshawi) PC001 296 GCATGGATGTTGGACAAATTGGGGG 67885868 (Drosophila pseudoobscura) PC001 297 GCATGGATGTTGGACAAATTGGGGGGTGT 25956479 (Biphyllus lunatus) PC001 298 GCATGGATGTTGGACAAATTGGGGGGTGTCT 90814901 (Nasonia vitripennis) PC001 299 GCTCCCAAAGCATGGATGTTGGA 110260785 (Spodoptera frugiperda) PC001 300 GCTCCCAAAGCATGGATGTTGGACAA 76551269 (Spodoptera frugiperda) PC001 301 GCTCCCAAAGCATGGATGTTGGACAAA 56085210 (Bombyx mori) PC001 302 GCTCCCAAAGCATGGATGTTGGACAAATTGGG 22474232 (Helicoverpa armigera) PC001 303 GGTCCCAAAGGAATCCCATTTTTGGT 50565112 (Homalodisca coagulata) PC001 304 GGTGTCTTCGCCCCTCGTCCA 82575022 (Acyrthosiphon pisum) PC001 305 GTGAAGTCACTAAAATTGTCATGCAAAG 25956820 (Biphyllus lunatus) PC001 306 TCCACCGGGCCTCACAAGTTGCG 58371410 (Lonomia obliqua) PC001 307 TCCCAAAGCATGGATGTTGGA 110263957 (Spodoptera frugiperda) PC001 308 TGCTCCCAAAGCATGGATGTTGGACAA 48927129 (Hydropsyche sp.) PC001 309 TGGATGTTGGACAAATTGGGGGGTGTCT 90814560 (Nasonia vitripennis) PC003 310 AAAATTGAAGATTTCTTGGAA 108742519 (Gryllus firmus) 109978291 (Gryllus pennsylvanicus) 62083482 (Lysiphlebus testaceipes) 56150446 (Rhynchosciara americana) PC003 311 AACAAACGTGAAGTGTGGAGAGT 57963755 (Heliconius melpomene) PC003 312 AAGTCGCCCTTCGGGGGTGGCCG 77884026 (Aedes aegypti) PC003 313 ACTTCTCCCTGAAGTCGCCCTTCGG 92992453 (Drosophila mojavensis) PC003 314 AGATTGTTTGAAGGTAATGCACTTCT 60298816 (Diaphorina citri) PC003 315 ATCCGTAAAGCTGCTCGTGAA 33373689 (Glossina morsitans) PC003 316 ATCGACTTCTCCCTGAAGTCGCC 92987113 (Drosophila grimshawi) PC003 317 ATCGACTTCTCCCTGAAGTCGCCCT 1899548 (Drosophila melanogaster) PC003 318 ATGAAGCTTGATTATGTTTTGGGTCTGAAAATTG 71539459 (Diaphorina citri) AAGATTTCTTGGAAAGA PC003 319 ATTGAAGATTTCTTGGAAAGA 62240069 (Diabrotica virgifera) PC003 320 CACATCGACTTCTCCCTGAAGTC 71550961 (Oncometopia nigricans) PC003 321 CAGAAGCACATCGACTTCTCCCTGAAGTCGCCCTTCGG 68267151 (Drosophila simulans) 33355000 (Drosophila yakuba) PC003 322 CAGAAGCACATCGACTTCTCCCTGAAGTCGCCCTTCGGGGG 2152719 (Drosophila melanogaster) PC003 323 CGACTTCTCCCTGAAGTCGCC 107324644 (Drosophila melanogaster) PC003 324 CTCCCTGAAGTCGCCCTTCGG 15461311 (Drosophila melanogaster) PC003 325 CTGGACTCGCAGAAGCACATCGACTTCTCCCTGAA 38624772 (Drosophila melanogaster) PC003 326 GACTTCTCCCTGAAGTCGCCCTTCGG 92959651 (Drosophila ananassae) 92981958 (Drosophila mojavensis) 76552467 (Spodoptera frugiperda) PC003 327 GCTAAAATCCGTAAAGCTGCTCGTGA 60296953 (Diaprepes abbreviatus) PC003 328 GCTAAAATCCGTAAAGCTGCTCGTGAACT 77329341 (Chironomus tentans) PC003 329 GTGCGCAAGCAGGTGGTGAACATCCC 60312414 (Papilio dardanus) PC003 330 TACACTTTGGCTAAAATCCGTAAAGCTGC 22040140 (Ctenocephalides felis) PC003 331 TCGCAGAAGCACATCGACTTCTC 18883211 (Anopheles gambiae) PC003 332 TCGCAGAAGCACATCGACTTCTCCCTGAAGTCGCCCTTCGG 92963738 (Drosophila grimshawi) PC003 333 TCTCCCTGAAGTCGCCCTTCGG 38047836 (Drosophila yakuba) 27260897 (Spodoptera frugiperda) PC003 334 TGAAAATTGAAGATTTCTTGGAA 61646980 (Acyrthosiphon pisum) 73615225 (Aphis gossypii) 83661890 (Myzus persicae) 37804775 (Rhopalosiphum padi) 30049209 (Toxoptera citricida) PC003 335 TGAAAATTGAAGATTTCTTGGAAAGA 90813959 (Nasonia vitripennis) PC003 336 TGGACTCGCAGAAGCACATCGACTTCTCCCT 25959408 (Meladema coriacea) PC003 337 TGGCTAAAATCCGTAAAGCTGC 76169907 (Diploptera punctata) PC003 338 TGGGTCTGAAAATTGAAGATTTCTTGGA 34788046 (Callosobruchus maculatus) PC003 339 TTCTCCCTGAAGTCGCCCTTCGG 107331362 (Drosophila melanogaster) 110240861 (Spodoptera frugiperda) PC003 340 TTGGGTCTGAAAATTGAAGATTTCTTGGAAAG 37952462 (Ips pini) PC003 341 GGGTGCGCAAGCAGGTGGTGAAC 110887729 (Argas monolakensis) PC005 342 CTCCTCAAAAAGTACAGGGAGGCCAAGAA 63512537 (Ixodes scapularis) PC005 343 AAAAAGAAGGTGTGGTTGGATCC 33491424 (Trichoplusia ni) PC005 344 AAAAAGAAGGTGTGGTTGGATCCAAATGAAATCAA 91759273 (Bombyx mori) 55908261 (Locusta migratoria) PC005 345 AAAGAAGGTGTGGTTGGATCCAAATGAAATCA 101414616 (Plodia interpunctella) PC005 346 AACACCAACTCAAGACAAAACAT 25957531 (Cicindela campestris) PC005 347 AACACCAACTCAAGACAAAACATCCGTAA 25958948 (Curculio glandium) PC005 348 AACTCAAGACAAAACATCCGTAA 60314333 (Panorpa cf. vulgaris APV-2005) PC005 349 AAGAACACTGAAGCCAGAAGGAAGGGAAGGCATTGTGG 25958948 (Curculio glandium) PC005 350 AATGAAATCAACGAAATCGCCAACAC 92979160 (Drosophila grimshawi) 92232072 (Drosophila willistoni) PC005 351 ATGGAGTACATCCACAAGAAGAAGGC 15454802 (Drosophila melanogaster) PC005 352 CAAGATGCTGTCTGACCAGGC 67872905 (Drosophila pseudoobscura) PC005 353 CGCCTCCTCAAAAAGTACAGGGAGGC 75471260 (Tribolium castaneum) PC005 354 CGTATCGCCACCAAGAAGCAG 68267374 (Drosophila simulans) PC005 355 CTGTACATGAAAGCGAAGGGTAA 25957246 (Carabus granulatus) PC005 356 GAACAAGAGGGTCCTTATGGAG 90977107 (Aedes aegypti) PC005 357 GAACAAGAGGGTCCTTATGGAGTACATCCA 40544432 (Tribolium castaneum) PC005 358 GAGCGTATCGCCACCAAGAAGCA 92480972 (Drosophila erecta) 33354497 (Drosophila yakuba) PC005 359 GAGTACATCCACAAGAAGAAGGC 15516174 (Drosophila melanogaster) PC005 360 GATCCAAATGAAATCAACGAAAT 56149737 (Rhynchosciara americana) PC005 361 GCCAACACCAACTCAAGACAAAACATCCG 103019061 (Tribolium castaneum) PC005 362 GCCAACACCAACTCAAGACAAAACATCCGTAAGCTCAT 56149737 (Rhynchosciara americana) PC005 363 GGCAAAAAGAAGGTGTGGTTGGATCCAAATGAAATCA 101417042 (Plodia interpunctella) PC005 364 GGGTCCTTATGGAGTACATCCACAAGAA 67885759 (Drosophila pseudoobscura) PC005 365 TGCGATGCGGCAAAAAGAAGGT 56149531 (Rhynchosciara americana) PC005 366 TGGTTGGATCCAAATGAAATCAACGAAAT 15355452 (Apis mellifera) 83662749 (Myzus persicae) PC005 367 TTGGATCCAAATGAAATCAACGAAAT 110985444 (Apis mellifera) 111158439 (Myzus persicae) PC010 368 CCGCAGTTCATGTACCATTTG 92952825 (Drosophila ananassae) PC010 369 CTGATGGAGATGAAGCAGTGCTGCAATTC 58395529 (Anopheles gambiae str. PEST) PC010 370 GACGTGCTCAGATGGGTGGACAG 56152422 (Rhynchosciara americana) PC010 371 GCCCGAGCCTGTGTTGTTGGA 92939820 (Drosophila virilis) PC010 372 GGCACATGCTGATGCGTGAGGAT 83937570 (Lutzomyia longipalpis) PC010 373 GGGCACATGGTCATGGGCGATTC 3337934 (Drosophila melanogaster) PC014 374 AAGATCATGGAGTACTACGAGAA 85577611 (Aedes aegypti) PC014 375 ACGAGAAAAAGGAGAAGCAAG 67838315 (Drosophila pseudoobscura) PC014 376 ATGGAGTACTACGAGAAAAAGGAGAAGCAAGT 92928915 (Drosophila virilis) PC014 377 CAAAAACAAATCAAACACATGATGGC 82574001 (Acyrthosiphon pisum) 111160670 (Myzus persicae) PC014 378 CTCAAGATCATGGAGTACTACGA 55692554 (Drosophila yakuba) PC014 379 CTCAAGATCATGGAGTACTACGAGAA 92942301 (Drosophila ananassae) 92476196 (Drosophila erecta) 53884266 (Plutella xylostella) PC014 380 GAACAAGAAGCCAATGAGAAAGC 111160670 (Myzus persicae) PC014 381 GACTCAAGATCATGGAGTACT 112432414 (Myzus persicae) PC014 382 GATGTTCAAAAACAAATCAAACACATGATGGC 73618688 (Aphis gossypii) PC014 383 TACTACGAGAAAAAGGAGAAGC 62239529 (Diabrotica virgifera) PC014 384 TTCATTGAACAAGAAGCCAATGA 15357365 (Apis mellifera) PC016 385 ACACGACCGGCGCGCTCGTAAAT 75710699 (Tribolium castaneum) PC016 386 ACCAGCACGTGCTTCTCGCACTGGTAGGCCAAGAATTCGGC 92048971 (Drosophila willistoni) PC016 387 AGCACGTGCTTCTCGCACTGGTAGGC 92985459 (Drosophila grimshawi) PC016 388 ATACGCGACCACGGGTTGATCGG 18868609 (Anopheles gambiae) 31206154 (Anopheles gambiae str. PEST) PC016 389 ATCGGTGTACATGTAACCGGGGAAACC 2921501 (Culex pipiens) 62239897 (Diabrotica virgifera) 92957249 (Drosophila ananassae) 92477818 (Drosophila erecta) 92965644 (Drosophila grimshawi) 24646342 (Drosophila melanogaster) 67896654 (Drosophila pseudoobscura) 75710699 (Tribolium castaneum) PC016 390 ATCGTTGGCCAAGTTCAAGAACAG 92950254 (Drosophila ananassae) PC016 391 CACGTGCTTCTCGCACTGGTAGGCCAAGAA 4680479 (Aedes aegypti) PC016 392 CCAGTCTGGATCATTTCCTCGGG 67884189 (Drosophila pseudoobscura) PC016 393 CCAGTCTGGATCATTTCCTCGGGATA 92940287 (Drosophila virilis) PC016 394 CGCTCGATGGTCGGATCGTTGGCCAAGTTCAAGAACA 2921501 (Culex pipiens) PC016 395 CGCTCGATGGTCGGATCGTTGGCCAAGTTCAAGAACAGACA 92477818 (Drosophila erecta) CACGTTCTCCAT 15061308 (Drosophila melanogaster) PC016 396 CGTGCTTCTCGCACTGGTAGGCCAAGAA 13752998 (Drosophila melanogaster) PC016 397 CTGGCAGTTTCCATGTTGACACCCATAGC 16898595 (Ctenocephalides felis) PC016 398 CTTAGCATCAATACCTGATGT 61646107 (Acyrthosiphon pisum) PC016 399 GACATGTCGGTCAAGATGACCAGCACGTG 9713 (Manduca sexta) PC016 400 GACATGTCGGTCAAGATGACCAGCACGTGCTTCTCGCACTG 92933153 (Drosophila virilis) PC016 401 GACATGTCGGTCAAGATGACCAGCACGTGCTTCTCGCACTG 2921501 (Culex pipiens) GTA PC016 402 GAGCCGTTCTCTTCGAAGTCCTG 237458 (Heliothis virescens) PC016 403 GATGACCAGCACGTGCTTCTC 18883474 (Anopheles gambiae) PC016 404 GATGACCAGCACGTGCTTCTCGCACTG 92477818 (Drosophila erecta) PC016 405 GATGACCAGCACGTGCTTCTCGCACTGGTAGGCCAAGAA 15061308 (Drosophila melanogaster) 67883622 (Drosophila pseudoobscura) PC016 406 GATGACCAGCACGTGCTTCTCGCACTGGTAGGCCAAGAATTC 31206154 (Anopheles gambiae str. PEST) GGC PC016 407 GATGGGGATCTGCGTGATGGA 101403557 (Plodia interpunctella) PC016 408 GATGGGGATCTGCGTGATGGAGCCGTTGCGGCCCTCCAC 53883819 (Plutella xylostella) PC016 409 GGAATAGGATGGGTGATGTCGTCGTTGGGCATAGT 110240379 (Spodoptera frugiperda) PC016 410 GGAATAGGATGGGTGATGTCGTCGTTGGGCATAGTCA 27372076 (Spodoptera littoralis) PC016 411 GGATCGTTGGCCAAGTTCAAGAA 91757299 (Bombyx mori) PC016 412 GGATCGTTGGCCAAGTTCAAGAACA 103020368 (Tribolium castaneum) PC016 413 GGATCGTTGGCCAAGTTCAAGAACAG 237458 (Heliothis virescens) PC016 414 GGATGGGTGATGTCGTCGTTGGGCAT 101403557 (Plodia interpunctella) PC016 415 GGCAGTTTCCATGTTGACACCCATAGC 4680479 (Aedes aegypti) PC016 416 GGCATAGTCAAGATGGGGATCTG 92924977 (Drosophila virilis) PC016 417 GTCTGGATCATTTCCTCGGGATA 92966144 (Drosophila grimshawi) PC016 418 GTGATGATGCGCTCGATGGTCGGATCGTTGGCCAAGTTCAA 15514750 (Drosophila melanogaster) GAACAGACACACGTTCTCCAT PC016 419 GTGTACATGTAACCGGGGAAACC 92924977 (Drosophila virilis) PC016 420 GTTTCCATGTTGACACCCATAGC 91826756 (Bombyx mori) PC016 421 TCAATGGGTTTTCCTGATCCATTGAA 49395165 (Drosophila melanogaster) 99009492 (Leptinotarsa decemlineata) PC016 422 TCATCCAGCACAGACTTGCCAG 10763875 (Manduca sexta) PC016 423 TCATCCAGCACAGACTTGCCAGG 9713 (Manduca sexta) PC016 424 TCCATGTTGACACCCATAGCAGC 92962756 (Drosophila ananassae) PC016 425 TCCATGTTGACACCCATAGCAGCAAACAC 60295607 (Homalodisca coagulata) PC016 426 TCGAAGTCCTGCTTGAAGAACCTGGC 101403557 (Plodia interpunctella) PC016 427 TCGATGGTCGGATCGTTGGCCAAGTTCAAGAACAGACACAC 4680479 (Aedes aegypti) GTTCTCCAT PC016 428 TCGGATCGTTGGCCAAGTTCAAGAACAGACACACG 2793275 (Drosophila melanogaster) TTCTCCAT PC016 429 TCGTTGGCCAAGTTCAAGAACAG 90137502 (Spodoptera frugiperda) PC016 430 TGGGTGATGTCGTCGTTGGGCAT 53883819 (Plutella xylostella) PC016 431 TTCTCGCACTGGTAGGCCAAGAA 110240379 (Spodoptera frugiperda) 27372076 (Spodoptera littoralis) PC016 432 TTCTCTTCGAAGTCCTGCTTGAAGAACCTGGC 9713 (Manduca sexta) PC016 433 TTGGCCAAGTTCAAGAACAGACACACGTT 55905051 (Locusta migratoria) PC016 434 GTTTCCATGTTGACACCCATAGCAGCAAA 84116133 (Dermatophagoides farinae) -
TABLE 4-EV Target ID SEQ ID NO Sequence * Example Gi-number and species EV005 533 AAGCGACGTGAAGAGCGTATCGC 76553206 (Spodoptera frugiperda) EV005 534 ATTAAAGATGGTCTTATTATTAA 15355452 (Apis mellifera) EV005 535 CGTAAGCGACGTGAAGAGCGTATCGC 33491424 (Trichoplusia ni) EV005 536 GGTCGTCATTGTGGATTTGGTAAAAG 60314333 (Panorpa cf. vulgaris APV-2005) EV005 537 TGCGATGCGGCAAGAAGAAGGT 15048930 (Drosophila melanogaster) EV005 538 TGCGGCAAGAAGAAGGTTTGG 93002524 (Drosophila mojavensis) 92930455 (Drosophila virilis) 92044532 (Drosophila willistoni) EV005 539 TTGTGGATTTGGTAAAAGGAA 60306723 (Sphaerius sp.) EV010 540 CAAGTGTTCAATAATTCACCA 83937567 (Lutzomyia longipalpis) EV010 541 CATTCTATAGGCACATGTTGATG 29558345 (Bombyx mori) EV010 542 CTGGCGGCCACATGGTCATGGG 92476940 (Drosophila erecta) 92977931 (Drosophila grimshawi) 2871327 (Drosophila melanogaster) EV015 543 AACAGGCCCAATTCCATCGACCC 92947821 (Drosophila ananassae) EV015 544 AGAGAAAAAATGGACCTCATCGAC 62239128 (Diabrotica virgifera) EV015 545 CGCCATCCGTCGCTGTTCAAGGCGATCGG 18866954 (Anopheles gambiae) EV015 546 CTGGCAGTTACCATGGAGAACTTCC 62239128 (Diabrotica virgifera) GTTACGCCATG EV015 547 GTGATCGTGATGGCGGCCACGAA 18887285 (Anopheles gambiae) EV015 548 GTGATCGTGATGGCGGCCACGAAC 83423460 (Bombyx mori) EV015 549 TGATGGACGGCATGAAGAAAAG 91086234 (Tribolium castaneum) EV016 550 AATATGGAAACAGCCAGATTCTT 109193659 (Myzus persicae) EV016 551 ATGATCCAGACTGGTATTTCTGC 92938857 (Drosophila virilis) EV016 552 ATTGATGTGATGAATTCCATTGCC 55905051 (Locusta migratoria) EV016 553 GAAATGATCCAGACTGGTATTTCTGC 50562965 (Homalodisca coagulata) EV016 554 GAAGAAATGATCCAGACTGGTAT 92969748 (Drosophila mojavensis) EV016 555 GACTGTGTCTGGTGTGAACGG 2286639 (Drosophila melanogaster) 92042621 (Drosophila willistoni) EV016 556 GATATGTTGGGTCGTGTGTTTAA 92969748 (Drosophila mojavensis) EV016 557 GATCCTACCATTGAAAGAATTAT 99011193 (Leptinotarsa decemlineata) EV016 558 GTGTCTGAAGATATGTTGGGTCGTGT 76554661 (Spodoptera frugiperda) EV016 559 GTGTCTGGTGTGAACGGACCG 22474331 (Helicoverpa armigera) EV016 560 TCTGAAGATATGTTGGGTCGTGT 27372076 (Spodoptera littoralis) EV016 561 TGGCATATCAATGTGAGAAGCA 60336595 (Homalodisca coagulata) EV016 562 TTGAACTTGGCCAATGATCCTACCAT 91827863 (Bombyx mori) -
TABLE 4-AG Target ID SEQ ID NO Sequence * Example Gi-number and species AG001 621 AAAACTGGTGAATTCTTCCGTTTGAT 37953169 (Ips pini) AG001 622 AAAGCATGGATGTTGGACAAA 98994282 (Antheraea mylitta) 109978109 (Gryllus pennsylvanicus) 55904580 (Locusta migratoria) AG001 623 AAAGCATGGATGTTGGACAAATT 31366663 (Toxoptera citricida) AG001 624 AAAGCATGGATGTTGGACAAATTGGG 60311985 (Papilio dardanus) AG001 625 AAAGCATGGATGTTGGACAAATTGGGGGGTGT 37951951 (Ips pini) 109195107 (Myzus persicae) AG001 626 AAATACAAATTGTGCAAAGTCCG 25958703 (Curculio glandium) AG001 627 AACTTGTGCATGATCACCGGAG 22039624 (Ctenocephalides felis) AG001 628 AAGCATGGATGTTGGACAAATTGGGGG 112433559 (Myzus persicae) AG001 629 AAGCATGGATGTTGGACAAATTGGGGGGTGTGTT 70909486 (Mycetophagus quadripustulatus) AG001 630 ACTGGTGAATTCTTCCGTTTGAT 77327303 (Chironomus tentans) AG001 631 ATTTGAAAAAACTGGTGAATTCTTCCGTTTGA 22039624 (Ctenocephalides felis) TCTATGATGTTAA AG001 632 CCAAAGCATGGATGTTGGACAA 90138164 (Spodoptera frugiperda) AG001 633 CCCAAAGCATGGATGTTGGACAA 48927129 (Hydropsyche sp.) 76551269 (Spodoptera frugiperda) AG001 634 CCCAAAGCATGGATGTTGGACAAA 91835558 (Bombyx mori) 103783745 (Heliconius erato) 101419954 (Plodia interpunctella) AG001 635 CCCAAAGCATGGATGTTGGACAAATT 73619372 (Aphis gossypii) AG001 636 CCCAAAGCATGGATGTTGGACAAATTGGG 77329254 (Chironomus tentans) 22474232 (Helicoverpa armigera) AG001 637 CCCAAAGCATGGATGTTGGACAAATTGGGGG 84647382 (Myzus persicae) AG001 638 CCCAAAGCATGGATGTTGGACAAATTGGGGGGTGT 84647995 (Myzus persicae) AG001 639 CCCAAAGCATGGATGTTGGACAAATTGGGGGGTGTGTT 60305420 (Mycetophagus quadripustulatus) AG001 640 CTGGATTCATGGATGTGATCA 27617172 (Anopheles gambiae) AG001 641 GAATTCTTCCGTTTGATCTATGATGT 50565112 (Homalodisca coagulata) 71049326 (Oncometopia nigricans) AG001 642 GCATGGATGTTGGACAAATTGGG 92969396 (Drosophila grimshawi) 93001617 (Drosophila mojavensis) 92929731 (Drosophila virilis) AG001 643 GCATGGATGTTGGACAAATTGGGGG 67885868 (Drosophila pseudoobscura) AG001 644 GCATGGATGTTGGACAAATTGGGGGGTGT 90814901 (Nasonia vitripennis) AG001 645 GCATGGATGTTGGACAAATTGGGGGGTGTGTTCGCCCC 25956479 (Biphyllus lunatus) AG001 646 GCCCCCAAAGCATGGATGTTGGACAA 50565112 (Homalodisca coagulata) AG001 647 GCTGGATTCATGGATGTGATC 103775903 (Heliconius erato) AG001 648 GGATCATTCGATATTGTCCACAT 113017118 (Bemisia tabaci) AG001 649 GGCAACTTGTGCATGATCACCGGAGG 25958703 (Curculio glandium) AG001 650 TACAAATTGTGCAAAGTCCGCAA 56161193 (Rhynchosciara americana) AG001 651 TATCCTGCTGGATTCATGGATGT 40934103 (Bombyx mori) AG001 652 TCACCATTGAAAAAACTGGTGAATTCTTC 62083410 (Lysiphlebus testaceipes) AG001 653 TGCATGATCACCGGAGGCAGGAA 3478550 (Antheraea yamamai) AG001 654 TGCATGATCACCGGAGGCAGGAATTTGGG 14627585 (Drosophila melanogaster) 33355008 (Drosophila yakuba) AG001 655 TGGATGTTGGACAAATTGGGGGGTGT 90814560 (Nasonia vitripennis) AG001 656 TGTGCATGATCACCGGAGGCAG 92949859 (Drosophila ananassae) 92999306 (Drosophila grimshawi) AG001 657 TGTGCATGATCACCGGAGGCAGGAATTTGGG 67842487 (Drosophila pseudoobscura) AG005 658 AAGATCGACAGGCATCTGTACCACG 83935651 (Lutzomyia longipalpis) AG005 659 AAGATCGACAGGCATCTGTACCACGCCCTGTACATGAAGGC 76552995 (Spodoptera frugiperda) AG005 660 AAGGGTAACGTGTTCAAGAACAA 18932248 (Anopheles gambiae) 60306606 (Sphaerius sp.) AG005 661 AAGGGTAACGTGTTCAAGAACAAG 18953735 (Anopheles gambiae) 25957811 (Cicindela campestris) 60311920 (Euclidia glyphica) AG005 662 AAGGGTAACGTGTTCAAGAACAAGAGAGT 25958948 (Curculio glandium) 90812513 (Nasonia giraulti) AG005 663 ACAAGAAGAAGGCTGAGAAGGC 60311700 (Euclidia glyphica) AG005 664 ATCAAGGATGGTTTGATCATTAA 25957811 (Cicindela campestris) AG005 665 ATGGAATACATCCACAAGAAGAAG 56149737 (Rhynchosciara americana) AG005 666 CAAAACATCCGTAAATTGATCAAGGATGGT 60314333 (Panorpa cf. vulgaris APV-2005) AG005 667 CAAAACATCCGTAAATTGATCAAGGATGGTTTGATCAT 25958948 (Curculio glandium) AG005 668 CAAGGGTAACGTGTTCAAGAA 476608 (Drosophila melanogaster) 38048300 (Drosophila yakuba) AG005 669 CAAGGGTAACGTGTTCAAGAACAAG 92946023 (Drosophila ananassae) 2871633 (Drosophila melanogaster) 68267374 (Drosophila simulans) 33354497 (Drosophila yakuba) 83937096 (Lutzomyia longipalpis) AG005 670 CATCTGTACCACGCCCTGTACATGAAGGC 101417042 (Plodia interpunctella) AG005 671 GAAGAAGGCTGAGAAGGCCCG 40874303 (Bombyx mori) AG005 672 GACAGGCATCTGTACCACGCCCTGTACATGAAGGC 90135865 (Bicyclus anynana) AG005 673 GAGAAGGCCCGTGCCAAGATGTTG 82572137 (Acyrthosiphon pisum) AG005 674 GATCCAAATGAAATCAATGAGATTGC 60312128 (Papilio dardanus) AG005 675 GCTCGTATGCCTCAAAAGGAACTATGG 25957246 (Carabus granulatus) AG005 676 GGGTAACGTGTTCAAGAACAAG 4447348 (Drosophila melanogaster) AG005 677 GGTAACGTGTTCAAGAACAAG 18948649 (Anopheles gambiae) AG005 678 TACATCCACAAGAAGAAGGCTGAGAAG 2871633 (Drosophila melanogaster) AG005 679 TACCACGCCCTGTACATGAAGGC 10764114 (Manduca sexta) AG005 680 TCAATGAGATTGCCAACACCAACTC 83935651 (Lutzomyia longipalpis) AG005 681 TGATCAAGGATGGTTTGATCAT 77642775 (Aedes aegypti) 27615052 (Anopheles gambiae) 92982271 (Drosophila grimshawi) 67896961 (Drosophila pseudoobscura) AG005 682 TGATCAAGGATGGTTTGATCATTAAGAA 92042883 (Drosophila willistoni) AG005 683 TGGTTGGATCCAAATGAAATCA 40867709 (Bombyx mori) 101417042 (Plodia interpunctella) AG005 684 TGGTTGGATCCAAATGAAATCAA 15355452 (Apis mellifera) 83662749 (Myzus persicae) AG005 685 TGGTTGGATCCAAATGAAATCAATGAGAT 63013469 (Bombyx mori) 55908261 (Locusta migratoria) AG005 686 TGTACCACGCCCTGTACATGAAGGC 23573622 (Spodoptera frugiperda) AG005 687 TTGATCAAGGATGGTTTGATCA 113019292 (Bemisia tabaci) AG005 688 TTGATCAAGGATGGTTTGATCAT 61674956 (Aedes aegypti) 41576849 (Culicoides sonorensis) AG005 689 TTGATGGAATACATCCACAAGAAGAAGGC 92225847 (Drosophila willistoni) AG005 690 AGGATGCGTGTCTTGAGGCGTCT 110887217 (Argas monolakensis) AG005 691 AAGGCCAAGGGTAACGTGTTCAAGAACAAG 110887217 (Argas monolakensis) AG010 692 CGTTTGTGTCAAAAGTTTGGAGAATA 78539702 (Glossina morsitans) AG010 693 GATGTTTTAAGATGGGTCGATCG 110759793 (Apis mellifera) AG010 694 TTTTACAGGCATATGCTTATGAGGGAAGATTT 55902158 (Locusta migratoria) AG010 695 TTTTTCGAGGTGGTCAATCAGCATTCGGC 92925934 (Drosophila virilis) AG014 696 AACATGCTGAACCAAGCCCGT 75466802 (Tribolium castaneum) AG014 697 AACATGCTGAACCAAGCCCGTCT 87266590 (Choristoneura fumiferana) 103779114 (Heliconius erato) AG014 698 AAGATCATGGAATACTATGAGAAGAA 101403826 (Plodia interpunctella) AG014 699 AAGATCATGGAATACTATGAGAAGAAGGAGAA 81520950 (Lutzomyia longipalpis) AG014 700 AATGAAAAGGCCGAGGAAATTGATGC 62239529 (Diabrotica virgifera) AG014 701 ATGGAATACTATGAGAAGAAGGA 16901350 (Ctenocephalides felis) AG014 702 CAATCCTCCAACATGCTGAACCA 53148472 (Plutella xylostella) AG014 703 CAGATCAAGCATATGATGGCCTTCAT 53148472 (Plutella xylostella) AG014 704 GCAGATCAAGCATATGATGGCCTTCAT 87266590 (Choristoneura fumiferana) 9732 (Manduca sexta) 90814338 (Nasonia vitripennis) AG014 705 GCGGAAGAAGAATTTAACATTGAAAAGGG 50558386 (Homalodisca coagulata) 71552170 (Oncometopia nigricans) AG016 706 AACGACGACATCACCCATCCTATTC 110248186 (Spodoptera frugiperda) 27372076 (Spodoptera littoralis) AG016 707 AACGGTTCCATGGAGAACGTGTG 2921501 (Culex pipiens) 92950254 (Drosophila ananassae) 110240379 (Spodoptera frugiperda) AG016 708 AACGGTTCCATGGAGAACGTGTGTCT 24646342 (Drosophila melanogaster) AG016 709 AACGGTTCCATGGAGAACGTGTGTCTCTTCTTGAA 91829127 (Bombyx mori) AG016 710 ATGATCCAGACCGGTATCTCCGC 22474040 (Helicoverpa armigera) AG016 711 ATGCCGAACGACGACATCACCCATCC 31206154 (Anopheles gambiae str. PEST) AG016 712 CAATGCGAGAAACACGTGCTGGT 9713 (Manduca sexta) AG016 713 CCGCACAACGAAATCGCCGCCCAAAT 75469507 (Tribolium castaneum) AG016 714 CGTTTCTTCAAGCAGGACTTCGA 83937868 (Lutzomyia longipalpis) AG016 715 CTTGGACATCCAAGGTCAACCCATCAACCCATGGTC 104530890 (Belgica antarctica) AG016 716 GAAATGATCCAGACCGGTATCTC 2921501 (Culex pipiens) 92966144 (Drosophila grimshawi) AG016 717 GAAATGATCCAGACCGGTATCTCCGCCATCGACGTGATGAAC 31206154 (Anopheles gambiae str. PEST) TC AG016 718 GAAGAAATGATCCAGACCGGTAT 75469507 (Tribolium castaneum) AG016 719 GAAGAAGTACCCGGACGTCGTGG 22038926 (Ctenocephalides felis) AG016 720 GACATCCAAGGTCAACCCATCAA 16898595 (Ctenocephalides felis) AG016 721 GCCCGTTTCTTCAAGCAGGACTTCGA 31206154 (Anopheles gambiae str. PEST) AG016 722 GCCGCCCAAATCTGTAGACAGGC 60295607 (Homalodisca coagulata) AG016 723 GGATCAGGAAAACCCATTGACAAAGGTCC 49395165 (Drosophila melanogaster) 99009492 (Leptinotarsa decemlineata) AG016 724 GGTTACATGTACACCGATTTGGC 91829127 (Bombyx mori) AG016 725 GGTTACATGTACACCGATTTGGCCACCAT 77750765 (Aedes aegypti) 9713 (Manduca sexta) 110248186 (Spodoptera frugiperda) 27372076 (Spodoptera littoralis) AG016 726 GGTTACATGTACACCGATTTGGCCACCATTTACGAA 92231646 (Drosophila willistoni) AG016 727 GTGTCGGAGGATATGTTGGGCCG 92460250 (Drosophila erecta) 24646342 (Drosophila melanogaster) 55694673 (Drosophila yakuba) AG016 728 TACATGTACACCGATTTGGCCACCAT 31206154 (Anopheles gambiae str. PEST) AG016 729 TTCAACGGATCAGGAAAACCCATTGACAAAGGTCC 99010653 (Leptinotarsa decemlineata) AG016 730 TTCCCCGGTTACATGTACACCGATTTGGCCAC 2921501 (Culex pipiens) 75710699 (Tribolium castaneum) AG016 731 TTCCCCGGTTACATGTACACCGATTTGGCCACCAT 62239897 (Diabrotica virgifera) 92957249 (Drosophila ananassae) 92477149 (Drosophila erecta) 67896654 (Drosophila pseudoobscura) AG016 732 TTCCCCGGTTACATGTACACCGATTTGGCCACCATTTA 92969578 (Drosophila grimshawi) AG016 733 TTCCCCGGTTACATGTACACCGATTTGGCCACCATTTACGA 103744758 (Drosophila melanogaster) AG016 734 TTCGCCATCGTGTTCGCCGCCATGGGTGT 31206154 (Anopheles gambiae str. PEST) AG016 735 TTCTTCAAGCAGGACTTCGAAGA 9713 (Manduca sexta) AG016 736 TTCTTGAATTTGGCCAACGATCC 92972277 (Drosophila grimshawi) 99011193 (Leptinotarsa decemlineata) AG016 737 TTCTTGAATTTGGCCAACGATCCCACCATCGAG 67839381 (Drosophila pseudoobscura) AG016 738 GCCGAATTTTTGGCTTATCAATG 84116133 (Dermatophagoides farinae) -
TABLE 4-TC Target ID SEQ ID NO Sequence * Example Gi-number and species TC001 813 AAAGCATGGATGTTGGATAAA 70909480 (Carabus granulatus) 16898765 (Ctenocephalides felis) 60298000 (Diaprepes abbreviatus) TC001 814 AATTTGTGTATGATTACTGGAGG 55904576 (Locusta migratoria) TC001 815 ACTGGAGGTCGTAACTTGGGGCGTGT 60298000 (Diaprepes abbreviatus) TC001 816 ATGATTACTGGAGGTCGTAACTTGGGGCGTGT 73619372 (Aphis gossypii) 37804548 (Rhopalosiphum padi) TC001 817 ATGCAAAGATTGATTAAAGTTGACGG 70909478 (Biphyllus lunatus) TC001 818 ATTAAAGTTGACGGAAAAGTT 110763874 (Apis mellifera) TC001 819 ATTGAGAAAACTGGGGAATTCTTCCG 37952206 (Ips pini) TC001 820 ATTGTTATGCAAAGATTGATTAAAGTTGACGGAAAAGT 70909486 (Mycetophagus quadripustulatus) TC001 821 CCAAGAAGCATTTGAAGCGTCT 55904580 (Locusta migratoria) TC001 822 CCAAGAAGCATTTGAAGCGTCTC 83935971 (Lutzomyia longipalpis) TC001 823 GCGCCCAAAGCATGGATGTTGGA 103790417 (Heliconius erato) 101419954 (Plodia interpunctella) TC001 824 GGCCCCAAGAAGCATTTGAAGCGT 14700642 (Drosophila melanogaster) TC001 825 TGATTACTGGAGGTCGTAACTTGGGGCGTGT 73612212 (Aphis gossypii) TC001 826 TGTATGATTACTGGAGGTCGTAACTTGGGGCGTGT 70909478 (Biphyllus lunatus) TC001 827 TTGATTTATGATGTTAAGGGA 77325485 (Chironomus tentans) TC001 828 TTGTGTATGATTACTGGAGGTCGTAA 60305816 (Mycetophagus quadripustulatus) TC002 829 AAAAACAAACGAGCGGCCATCCAGGC 18920284 (Anopheles gambiae) TC002 830 ATCGACCAAGAGATCCTCACAGCGAAGAAAAACGCGTCGAAA 75717966 (Tribolium castaneum) AACAAACGAGCGGCCATCCAGGCC TC002 831 CTCCAGCAGATCGATGGCACCCT 92475657 (Drosophila erecta) 13763220 (Drosophila melanogaster) TC002 832 TCAAGAGGAAGAAACGCTACGAAAAGCAGCTCCAGCAGATC 75717966 (Tribolium castaneum) GATGGCACCCTCAGCACCATCGAGATGCAGCGGGAGGCCCT CGAGGGGGCCAACACCAACACAGCCGTACTCAAAACGATGA AAAACGCAGCGGACGCCCTCAAAAATGCCCACCTCAACATG GATGTTGATGAGGT TC010 833 AACCTCAAGTACCAGGACATGCCCGA 90973566 (Aedes aegypti) TC010 834 AGCCGATTTTGTACAGTTATA 92944620 (Drosophila ananassae) TC010 835 ATGGACACATTTTTCCAAATT 33427937 (Glossina morsitans) TC010 836 ATGGACACATTTTTCCAAATTTTGATTTTCCACGG 56151768 (Rhynchosciara americana) TC010 837 CAAGTACCAGGACATGCCCGA 18911059 (Anopheles gambiae) TC010 838 CACATGCTGATGCGGGAGGACCTC 67893321 (Drosophila pseudoobscura) TC010 839 CCTCAAGTACCAGGACATGCCCGA 67893324 (Drosophila pseudoobscura) TC010 840 TCAAGTACCAGGACATGCCCGA 67893321 (Drosophila pseudoobscura) TC010 841 TTCATGTACCATTTGCGCCGCTC 92952825 (Drosophila ananassae) TC014 842 AAAATTCAGTCGTCAAACATGCTGAA 76169390 (Diploptera punctata) TC014 843 AACATGCTGAACCAAGCCCGT 87266590 (Choristoneura fumiferana) 103779114 (Heliconius erato) TC014 844 CACAGCAACTTGTGCCAGAAAT 92923718 (Drosophila virilis) TC014 845 GAGAAAGCCGAAGAAATCGATGC 77325830 (Chironomus tentans) TC014 846 GCCCGCAAACGTCTGGGCGAA 92232132 (Drosophila willistoni) TC014 847 TAAAAGTGCGTGAAGACCACGT 58371699 (Lonomia obliqua) TC015 848 ACACTGATGGACGGCATGAAGAA 78531609 (Glossina morsitans) TC015 849 ATCGGCGGTTGTCGCAAACAACT 6904417 (Bombyx mori) TC015 850 CCCGATGAGAAGATCCGGATGAA 83922984 (Lutzomyia longipalpis) TC015 851 CTGCCCCGATGAGAAGATCCG 92948836 (Drosophila ananassae) TC015 852 AACGAAACCGGTGCTTTCTTCTT 84116975 (Dermatophagoides farinae) -
TABLE 4-MP Target SEQ ID ID NO Sequence * Example Gi-number and species MP001 908 AAAGCATGGATGTTGGACAAA 98994282 (Antheraea mylitta) 108789768 (Bombyx mari) 109978109 (Gryllus pennsylvanicus) 55904580 (Locusta migratoria) MP001 909 AAAGCATGGATGTTGGACAAAT 77325485 (Chironomus tentans) 37951951 (lps pini) 60311985 (Papilio dardanus) 30031258 (Toxoptera citricida) MP001 910 AAGAAGCATTTGAAGCGTTTAAACGCACC 3658572 (Manduca sexta) MP001 911 AAGCATTTGAAGCGTTTAAACGC 103790417 (Heliconius erato) 22474232 (Helicoverpa armigera) MP001 912 AAGCATTTGAAGCGTTTAAACGCACC 25957217 (Carabus granulatus) MP001 913 AAGTCCGTACCGACCCTAATTATCCAGC 46994131 (Acyrthosiphon pisum) MP001 914 ACGCACCCAAAGCATGGATGTT 46999037 (Acyrthosiphon pisum) MP001 915 ACTATTAGATACGATATTGCA 46998791 (Acyrthosiphon pisum) MP001 916 ACTGGACCCAAAGGTGTGCCATTTTTAACTACTCATGATGGC 46997137 (Acyrthosiphon pisum) CGTACTAT MP001 917 AGAAGCATTTGAAGCGTTTAAA 27620566 (Anopheles gambiae) MP001 918 AGAAGCATTTGAAGCGTTTAAACGCACC 98994282 (Antheraea mylitta) MP001 919 AGAAGCATTTGAAGCGTTTAAACGCACCCAAAGCATGGATGT 73619191 (Aphis gossypii) TGGACAAAT MP001 920 AGTAAGGGAGTTAAATTGACTA 46998791 (Acyrthosiphon pisum) MP001 921 ATACAAGTTGTGTAAAGTAAAG 29553519 (Bombyx mori) MP001 922 ATGGATGTTATATCTATCCAAAAGACCAGTGAGCACTTVAGAT 46998791 (Acyrthosiphon pisum) TGATCTATGATGTGAAAGGTCGTTTVCAC MP001 923 ATTGATCTATGATGTGAAAGGTCGTTTCAC 46999037 (Acyrthosiphon pisum) MP001 924 CAAAAGACCAGTGAGCACTTTAGATTGAT 30031258 (Toxoptera citricida) MP001 925 CACAGAATTACTCCTGAAGAAGC 73619191 (Aphis gossypii) MP001 926 CACAGAATTACTCCTGAAGAAGCAAAATACAAG 46998791 (Acyrthosiphon pisum) 30031258 (Toxoptera citricida) MP001 927 CATCCAGGATCTTTTGATATTGTTCACATTAA 31364848 (Toxoptera citricida) MP001 928 CATCCAGGATCTTTTGATATTGTTCACATTAAGGATGCAAATG 37804548 (Rhopalosiphum padi) AACATATTTTTGCTAC MP001 929 CATCTAAAATTTTGGATCATATCCGTTTTGAAACTGGAAACTT 46998791 (Acyrthosiphon pisum) GTGCATGAT MP001 930 CATTTGAAGCGTTTAAACGCACC 30031258 (Toxoptera citricida) MP001 931 CATTTGAAGCGTTTAAACGCACCCAAAGCATGGATGTT 46998791 (Acyrthosiphon pisum) MP001 932 CCAAAGCATGGATGTTGGACAA 90138164 (Spodoptera frugiperda) MP001 933 CCAAGGAGTAAGGGAGTTAAATTGACTA 73615238 (Aphis gossypii) 31364848 (Toxoptera citricida) MP001 934 CCCAAAGCATGGATGTTGGAC 108789768 (Bombyx mori) MP001 935 CCCAAAGCATGGATGTTGGACAA 50565112 (Homalodisca coagulata) 48927129 (Hydropsyche sp.) 76551269 (Spodoptera frugiperda) MP001 936 CCCAAAGCATGGATGTTGGACAAA 56085210 (Bombyx mori) 103792451 (Heliconius erato) 101419954 (Plodia interpunctella) MP001 937 CCCAAAGCATGGATGTTGGACAAAT 22474095 (Helicoverpa armigera) MP001 938 CGTCCAAGCACCGGTCCACACAAACT 47537863 (Acyrthosiphon pisum) MP001 939 CTGGAAACTTGTGCATGATAACTGGAGG 78524585 (Glossina morsitans) MP001 940 GAAAGACATCCAGGATCTTTTGATATTGTTCACATTAAGGATG 46997137 (Acyrthosiphon pisum) CAAATGAACATATTTTTGCTACCCGGATGAACAATGTTTTTAT TATTGGAAAAGGTCAAAAGAACTACATTTCTCTACCAAG MP001 941 GATCATATCCGTTTTGAAACTGGAAACTTGTGCATGAT 73614725 (Aphis gossypii) MP001 942 GATGCAAATGAACATATTTTTGCTAC 31364848 (Toxoptera citricida) MP001 943 GCACCCAAAGCATGGATGTTGGA 70909486 (Mycetophagus quadripustulatus) MP001 944 GCACCCAAAGCATGGATGTTGGACAAAT 77329254 (Chironomus tentans) 60305420 (Mycetophagus quadripustulatus) MP001 945 GGATCTTTTGATATTGTTCACAT 60303405 (Julodis onopordi) MP001 946 GGATCTTTTGATATTGTTCACATTAAGGATGCAAATGAACATA 73619191 (Aphis gossypii) TTTTTGCTAC MP001 947 GGCCCCAAGAAGCATTTGAAGCGTTTAA 14693528 (Drosophila melanogaster) MP001 948 GGGCGTGTTGGTATTGTTACCAACAG 31365398 (Toxoptera citricida) MP001 949 GGGCGTGTTGGTATTGTTACCAACAGGGAAAG 73612212 (Aphis gossypii) 37804548 (Rhopalosiphum padi) MP001 950 GGTACAAACTGGACCCAAAGG 60297572 (Diaprepes abbreviatus) MP001 951 GTTTTTATTATTGGAAAAGGTCAAAAGAACTACATTTCTCT 73619191 (Aphis gossypii) 31364848 (Toxoptera citricida) MP001 952 TGAAGTATGCACTTACTGGTGC 73619191 (Aphis gossypii) MP001 953 TGTAAAGTAAAGAGGGTACAAACTGGACCCAAAGGTGT 73619191 (Aphis gossypii) MP001 954 TGTGTAAAGTAAAGAGGGTACAAACTGGACCCAAAGGTGT 30031258 (Toxoptera citricida) MP001 955 TTCTTGCGTAATCGTTTGAAGTATGCACTTACTGGTGCCGAA 46998791 (Acyrthosiphon pisum) GTCACCAAGATTGTCATGCAAAGATTAATCAAGGTTGATGGC AAAGTCCGTACCGACCCTAATTATCCAGC MP001 956 TTGGAAAAGGTCAAAAGAACTACATTTCTCT 73615060 (Aphis gossypii) MP001 957 TTGGATCATATCCGTTTTGAAACTGGAAACTTGTGCATGAT 37804548 (Rhopalosiphum padi) MP002 958 AAAAAAAATGGTACAACTAATAAACGAGCTGCATTGCAAGC 47537017 (Acyrthosiphon pisum) MP002 959 AAGAAACGGTACGAACAACAA 15363283 (Apis mellifera) MP002 960 ACAAGAATTTTTAGAAAAAAAAATTGAACAAGAAGTAGCGATA 47537017 (Acyrthosiphon pisum) GC MP002 961 CAAATTGATGGTACCATGTTAACTATTGAACAACAGCG 47537017 (Acyrthosiphon pisum) MP002 962 GAAGATGCGATACAAAAGCTTCGATCCAC 47537017 (Acyrthosiphon pisum) MP002 963 GAGTTTCTTTAGTAAAGTATTCGGTGG 110762684 (Apis mellifera) MP010 964 AAAAGATGATCCAAATAGTTT 110759793 (Apis mellifera) MP010 965 AAAATATTATTGATGGACACATTTTTCCATATTTTGATATTCCA 47520567 (Acyrthosiphon pisum) MP010 966 AATAGTCCTGATGAAACATCATATTATAG 47520567 (Acyrthosiphon pisum) MP010 967 CAAAAAGATGATCCAAATAGTTTCCGATTGCCAGAAAACTTCA 47520567 (Acyrthosiphon pisum) GTTTATATCCACAGTTCATGTATCATTTAAGAAGGTCTCAATTT CTACAAGTTTTTAA MP010 968 CAACATTCCAGTGGCTATAAACGAAT 47520567 (Acyrthosiphon pisum) MP010 969 CACATGTTGATGCGTGAAGATGTTAC 47520567 (Acyrthosiphon pisum) MP010 970 CCAATTCTGTATAGCTATAGTTTTAATGGTAGGCCAGAACCTG 47520567 (Acyrthosiphon pisum) TACTTTTGGATACCAG MP010 971 CCATCTCAAACACATAATAATATGTATGCTTATGGAGG 55814942 (Acyrthosiphon pisum) MP010 972 CTCAAAACTCGATTCCCAATGCCTCGGTATATTGACACAGAA 55814942 (Acyrthosiphon pisum) CAAGGTGGTAGTCAGGCAAGATTTTTACTATGCAAAGT MP010 973 GGTGATGGTGGAGCACCAGTTTTGACAGATGATGTAAGCTTG 55814942 (Acyrthosiphon pisum) CA MP010 974 GTGGCTGCATACAGTTCATTACGCAGTA 28571527 (Drosophila melanogaster) MP010 975 TAATGGCTCGTATGGTAGTGAACCGTGCTGAAACTGA 47520567 (Acyrthosiphon pisum) MP010 976 TATAGGCACATGTTGATGCGTGAAGAT 40924332 (Bombyx mori) MP010 977 TGGGCTGATCGTACGCTTATACGCTTGTGTCA 47520567 (Acyrthosiphon pisum) MP010 978 TTAGCTAGGAATTGGGCAGACCCTGT 47520567 (Acyrthosiphon pisum) MP016 979 AAACAAGATTTTGAGGAAAATGG 35508791 (Acyrthosiphon pisum) MP016 980 AACCTGGTAAATCAGTTCTTGA 35508791 (Acyrthosiphon pisum) MP016 981 AACGACGACATCACCCATCCTATTC 110240379 (Spodoptera frugiperda) 27372076 (Spodoptera littoralis) MP016 982 AATTTAGCTAATGATCCTACTATTGA 15366446 (Apis mellifera) MP016 983 ACTATGCCTAACGACGACATCACCCATCC 237458 (Heliothis virescens) MP016 984 ATAGTATTTGCTGCTATGGGTGTTAATATGGAAAC 30124460 (Toxoptera citricida) MP016 985 CAAATTTGTAGACAAGCTGGTCT 103020368 (Tribolium castaneum) MP016 986 CATGAAGACAATTTTGCTATAGTATTTGCTGCTATGGGTGTTA 35508791 (Acyrthosiphon pisum) ATATGGAAAC MP016 987 CCGATAGATAAAGGACCTCCTATTTTGGCTGAAGATTATTTGG 35508791 (Acyrthosiphon pisum) ATATTGAAGGCCAACCTATTAATCCATA MP016 988 CCTATTTTGGCTGAAGATTAT 55905051 (Locusta migratoria) MP016 989 CGTATCATTACACCACGTCTTGCTTTAACTGCTGCTGAATTTT 30124460 (Toxoptera citricida) TAGCTTA MP016 990 CGTCTTGCTTTAACTGCTGCTGAATTTTTAGCTTA 35508791 (Acyrthosiphon pisum) MP016 991 GAAGAAGTACCTGGGCGTCGTGGTTTCCCTGGTTACATGTAC 30124460 (Toxoptera citricida) AC MP016 992 GAAGGAAGAAATGGTTCTATCACACAAATACCTATTTTAACTA 30124460 (Toxoptera citricida) TGCCTAA MP016 993 GAAGGAAGAAATGGTTCTATCACACAAATACCTATTTTAACTA 73615307 (Aphis gossypii) TGCCTAACGA MP016 994 GATTTAGCTACAATTTATGAACG 30124460 (Toxoptera citricida) MP016 995 GCCAGATTCTTTAAACAAGATTTTGAGGAAAATGG 30124460 (Toxoptera citricida) MP016 996 GCTATGGGTGTTAATATGGAAAC 75469507 (Tribolium castaneum) MP016 997 GCTGCAGGTTTACCACATAATGAGATTGCTGCTCAAATTTG 35508791 (Acyrthosiphon pisum) MP016 998 GCTGGGCGTGTAGAAGGAAGAAATGGTTCTATCACACAAATA 55813096 (Acyrthosiphon pisum) -
TABLE 4-NL Target ID SEQ ID NO Sequence * Example Gi-number and species NL001 1161 CTGAAGAAGCTAAGTACAAGCT 16566724 (Spodoptera frugiperda) NL001 1162 TTCTTCCGTTTGATCTATGATGTTAA 16900870 (Ctenocephalides felis) NL001 1163 CAGCTGAAGAAGCTAAGTACAA 16900870 (Ctenocephalides felis), 56199521 (Culicoides sonorensis) NL001 1164 GAGTTCTTCCGTTTGATCTATGATGTTAA 16900945 (Ctenocephalides felis) NL001 1165 AAGTACAAGCTGTGCAAAGTGAAG 22474232 (Helicoverpa armigera) NL001 1166 TTCGACATCGTGCACATCAAGGAC 22474232 (Helicoverpa armigera) NL001 1167 ATCACAGCTGAAGAAGCTAAGTACAAG 25956820 (Biphyllus lunatus) NL001 1168 TGTGTATGATCACTGGAGGTCGTAA 25957367 (Carabus granulatus) NL001 1169 AACGTTTTCATCATCGGCAAG 27613698 (Anopheles gambiae) NL001 1170 CCAAAATCATGGACTTCATCA 3738704 (Manduca sexta) NL001 1171 TGATCTATGATGTTAAGGGACG 3738704 (Manduca sexta) NL001 1172 CATGGATGTTGGACAAATTGGG 37951951 (Ips pini), 56772312 (Drosophila virilis), 60305420 (Mycetophagus quadripustulatus), 67885868 (Drosophila pseudoobscura), 77321575 (Chironomus tentans), 25956479 (Biphyllus lunatus), 22474232 (Helicoverpa armigera); NL001 1173 TTTTGCCACTAGGTTGAACAACGT 37953169 (Ips pini) NL001 1174 GCAGCGTCTCATCAAGGTTGACGGCAA 48927129 (Hydropsyche sp.) NL001 1175 AAGGGACGTTTCACCATCCAC 50818668 (Heliconius melpomene) NL001 1176 AACCTGTGTATGATCACTGGAGG 60293875 (Homalodisca coagulata) NL001 1177 ACTAACTGTGAAGTGAAGAAAATTGT 60293875 (Homalodisca coagulata) NL001 1178 TTCTTCCGTTTGATCTATGATGT 60293875 (Homalodisca coagulata), 71047771 (Oncometopia nigricans) NL001 1179 TGTATGATCACTGGAGGTCGTAACTTGGG 60297219 (Diaprepes abbreviatus) NL001 1180 CATGGATGTTGGACAAATTGGGTGG 60311985 (Papilio dardanus) NL001 1181 GCTGAAGAAGCTAAGTACAAG 68758383 (Acanthoscurria gomesiana) NL001 1182 GGAGGTCGTAACTTGGGTCGTGT 77327303 (Chironomus tentans) NL001 1183 TATGATGTTAAGGGACGTTTCACCAT 77327303 (Chironomus tentans) NL001 1184 CATGGATGTTGGACAAATTGGG 93002561 (Drosophila grimshawi) 93001617 (Drosophila mojavensis) 92939328 (Drosophila virilis) 112433559 (Myzus persicae) NL001 1185 CTGAAGAAGCTAAGTACAAGCT 110264122 (Spodotera frugiperda) NL001 1186 GAAGAAGCTAAGTACAAGCTGTG 90820001 (Graphocephala atropunctata) NL001 1187 TTGCACAGCTTGTACTTAGCTTCTTC 90134075 (Bicyclus anynana) NL001 1188 AAGTACAAGCTGTGCAAAGTGAAG 112350104 (Helicoverpa armigera) NL001 1189 ATGATCACTGGAGGTCGTAACTTGGGTCG 113017118 (Bemisia tabaci) NL001 1190 GGTCGTAACTTGGGTCGTGTGGG 109978109 (Gryllus pennsylvanicus) NL001 1191 TTCGACATCGTGCACATCAAGGAC 112350104 (Helicoverpa armigera) NL001 1192 ACATCGTGCACATCAAGGACG 90981811 (Aedes aegypti) NL003 1193 CAGGAGTTGAAGATCATCGGAGAGTATGG 15457393 (Drosophila melanogaster), 76551770 (Spodoptera frugiperda) NL003 1194 CGTAAGGCCGCTCGTGAGCTG 1797555 (Drosophila melanogaster) NL003 1195 AAGGTAACGCCCTGCTGCGTCG 18863433 (Anopheles gambiae) NL003 1196 CAGGAGTTGAAGATCATCGGAGAGTA 2459311 (Antheraea yamamai), 49532931 (Plutella xylostella) NL003 1197 GCCAAGTCCATCCATCACGCCCG 33354488 (Drosophila yakuba), 60312414 (Papilio dardanus) NL003 1198 AAGTCCATCCATCACGCCCGT 33528372 (Trichoplusia ni) NL003 1199 TGTTTGAAGGTAACGCCCTGCT 34788046 (Callosobruchus maculatus) NL003 1200 CAGGAGTTGAAGATCATCGGAGA 35505798 (Acyrthosiphon pisum), 56772256 (Drosophila virilis) NL003 1201 GTGCGCCTGGACTCGCAGAAGCACAT 38624772 (Drosophila melanogaster) NL003 1202 GAGTTGAAGATCATCGGAGAGTA 4158332 (Bombyx mori) NL003 1203 TTGGGTTTAAAAATTGAAGATTTC 56150446 (Rhynchosciara americana) NL003 1204 TCGCAGAAGCACATTGACTTCTC 56772256 (Drosophila virilis) NL003 1205 AGAATGAAGCTCGATTACGTC 60306665 (Sphaerius sp.) NL003 1206 TTTGTGGTGCGCCTGGACTCG 60312414 (Papilio dardanus) NL003 1207 AGAAGCACATTGACTTCTCGCTGAAGTC 63514675 (Ixodes scapularis) NL003 1208 TCGCAGAAGCACATTGACTTCTCGCT 70979521 (Anopheles albimanus) NL003 1209 CTCATCAGACAAAGACATATCAGAGT 71536734 (Diaphorina citri) NL003 1210 TTGAAGATCATCGGAGAGTATGG 73612958 (Aphis gossypii) NL003 1211 AAAATTGAAGATTTCCTTGAA 75467497 (Tribolium castaneum) NL003 1212 CAGAAGCACATTGACTTCTCGCT 77730066 (Aedes aegypti) NL003 1213 CGTAAGGCCGCTCGTGAGCTG 24661714 (Drosophila melanogaster) NL003 1214 GCGTGATGGATGGACTTGGCCAA 90813959 (Nasonia vitripennis) NL003 1215 GCCAAGTCCATCCATCACGCCCG 92467993 (Drosophila erecta) NL003 1216 GCCAAGTCCATCCATCACGCCCGT 112349903 (Helicoverpa armigera) NL003 1217 CTCATCAGACAAAGACATATCAGAGT 110671455 (Diaphorina citri) NL003 1218 CAGGAGTTGAAGATCATCGGAGA 86464397 (Acyrthosiphon pisum) 92938865 (Drosophila virilis) NL003 1219 CAGGAGTTGAAGATCATCGGAGAGTATGG 101417830 (Plodia interpunctella) 110254389 (Spodoptera frugiperda) NL003 1220 GAGTTGAAGATCATCGGAGAGTA 112984021 (Bombyx mori) NL003 1221 TCGCAGAAGCACATTGACTTCTC 93002641 (Drosophila mojavensis) 92938865 (Drosophila virilis) NL003 1222 TTGAAGATCATCGGAGAGTATGG 111158779 (Myzus persicae) NL003 1223 CAGAAGCACATTGACTTCTCGCTGAA 92232387 (Drosophila willistoni) NL003 1224 CTCCGTAACAAGCGTGAGGTGTGG 92232387 (Drosophila willistoni) NL003 1225 CGTAACAAGCGTGAGGTGTGG 110558371 (Drosophila ananassae) NL003 1226 GTCAAATACGCCCTGGCCAAGAT 93001117 (Drosophila grimshawi) NL004 1227 TACGCCCATTTCCCCATCAACTGTGT 14994663 (Spodoptera frugiperda), 53883415 (Plutella xylostella) NL004 1228 TGCTCTCACATCGAAAACATG 22039837 (Ctenocephalides felis) NL004 1229 AACTTCCTGGGCGAGAAGTACATC 25959088 (Meladema coriacea) NL004 1230 GCCGTGTACGCCCATTTCCCCATCAACTG 25959088 (Meladema coriacea) NL004 1231 GTGTACGCCCATTTCCCCATCAACTGTGTGAC 2761563 (Drosophila melanogaster) NL004 1232 GTGTACGCCCATTTCCCCATCAACTGTGT 33354902 (Drosophila yakuba) NL004 1233 ATGCGTGCCGTGTACGCCCATTT 33433477 (Glossina morsitans) NL004 1234 TCAGCTGCCCTCATCCAACAGTC 33491496 (Trichoplusia ni) NL004 1235 AAGGATATTCGTAAATTCTTGGA 37952094 (Ips pini), 56199511 (Culicoides sonorensis) NL004 1236 GCCCATTTCCCCATCAACTGTGT 42766318 (Armigeres subalbatus) NL004 1237 AACTTCCTGGGCGAGAAGTACAT 49547659 (Rhipicephalus appendiculatus) NL004 1238 AAGAACAAGGATATTCGTAAATTCTTGGA 56152793 (Rhynchosciara americana) NL004 1239 AACTTCCTGGGCGAGAAGTACATCCG 58079798 (Amblyomma americanum), 49554219 (Boophilus microplus) NL004 1240 CATTTCCCCATCAACTGTGTGAC 60312171 (Papilio dardanus) NL004 1241 CGTAACTTCCTGGGCGAGAAGTACATCCG 63516417 (Ixodes scapularis) NL004 1242 AGATCAGCTGCCCTCATCCAACA 71539722 (Diaphorina citri) NL004 1243 GTGTACGCCCATTTCCCCATCAACTGTGT 24583601 (Drosophila melanogaster) NL004 1244 TACGCCCATTTCCCCATCAACTGT 113017826 (Bemisia tabaci) NL004 1245 TACGCCCATTTCCCCATCAACTGTGT 110263092 (Spodoptera frugiperda) NL004 1246 GCCCATTTCCCCATCAACTGTGT 94468811 (Aedes aegypti) NL004 1247 ACACAGTTGATGGGGAAATGGGC 90136736 (Bicyclus anynana) NL004 1248 GCCCATTTCCCCATCAACTGTGT 110671493 (Diaphorina citri) 110249018 (Spodoptera frugiperda) NL004 1249 GTCACACAGTTGATGGGGAAATGGGC 87266195 (Choristoneura fumiferana) NL004 1250 CCATTTCCCCATCAACTGTGT 90981351 (Aedes aegypti) NL005 1251 AAGGGTAACGTATTCAAGAACAAGCG 1900283 (Drosophila melanogaster) NL005 1252 AAGGGTAACGTATTCAAGAACAAG 25956594 (Biphyllus lunatus) NL005 1253 CGTGTATTGATGGAGTTCATTCA 30124405 (Toxoptera citricida), 60294294 (Homalodisca coagulata), 71046487 (Oncometopia nigricans), 73612243 (Aphis gossypii) NL005 1254 AAAGGTCAAGGAGGCCAAGAAG 67875089 (Drosophila pseudoobscura) NL005 1255 AAGATGTTGAACGACCAGGCTGAAGC 77324118 (Chironomus tentans) NL005 1256 ACGTTACCCTTAGCCTTCATGTA 90812513 (Nasonia giraulti) NL005 1257 AAGGGTAACGTATTCAAGAACAAGCG 45552830 (Drosophila melanogaster) NL005 1258 CGTGTATTGATGGAGTTCATTCA 112433619 (Myzus persicae) NL005 1259 AGGTCAAGGAGGCCAAGAAGC 92941126 (Drosophila virilis) NL005 1260 ACGTTACCCTTAGCCTTCATGTA 90812513 (Nasonia giraulti) NL005 1261 AAGGGTAACGTATTCAAGAACAAGCG 45552830 (Drosophila melanogaster) NL006 1262 AGTCCCAGGAACACCTATCAG 21464337 (Drosophila melanogaster) NL006 1263 ATTATTCCCTTCCCCGATCACAA 24646762 (Drosophila melanogaster) NL006 1264 CACGCTATCCCATCTCGTATGACAATTGG 24646762 (Drosophila melanogaster) NL006 1265 TACAAGTTCTGCAAAATTCGAGT 49573116 (Boophilus microplus) NL006 1266 ATGACAATTGGCCATTTAATTGAATG 50564037 (Homalodisca coagulata) NL006 1267 ACCTACACGCACTGCGAGATCCA 58384759 (Anopheles gambiae str. PEST) NL006 1268 GGTGTGGTGGAGTACATTGACAC 58384759 (Anopheles gambiae str. PEST) NL006 1269 ATTATTCCCTTCCCCGATCACAA 24646762 (Drosophila melanogaster) NL006 1270 AGTCCCAGGAACACCTATCAG 22026793 (Drosophila melanogaster) NL006 1271 CACGCTATCCCATCTCGTATGACAATTGG 24646762 (Drosophila melanogaster) NL006 1272 TCTCGTATGACAATTGGCCATTT 93000469 (Drosophila mojavensis) NL007 1273 GCAAACAAGTCATGATGTTCAG 15354019 (Apis mellifera) NL007 1274 GGTATGGGAAAAACTGCTGTATTTGTGTT 15354019 (Apis mellifera) NL007 1275 GAATGCATTCCTCAAGCTGTA 21068658 (Chironomus tentans) NL007 1276 TGCAAGAAATTCATGCAAGATCC 21068658 (Chironomus tentans) NL007 1277 TTCCAAATCAGCAAAGAGTATGA 2890413 (Drosophila melanogaster) NL007 1278 GATGACGAGGCCAAGCTGACGCT 49536419 (Rhipicephalus appendiculatus) NL007 1279 TGTGGTTTTGAACATCCATCTGAAGTACAACA 60308907 (Hister sp.) NL007 1280 GAAAACGAAAAGAACAAAAAG 77642464 (Aedes aegypti) NL007 1281 GGTATGGGAAAAACTGCTGTATTTGTGTT 110759359 (Apis mellifera) NL007 1282 GCAAACAAGTCATGATGTTCAG 110759359 (Apis mellifera) NL007 1283 CTGCAGCAGCACTATGTCAAACTCAA 90137538 (Spodoptera frugiperda) NL007 1284 GAAAACGAAAAGAACAAAAAG 94468805 (Aedes aegypti) NL008 1285 TGCCAAGCCTAAAGATTTGGG 60315277 (Dysdera erythrina) NL008 1286 ATGTTCAAGAAAGTTAATGCTAGAGA 60336214 (Homalodisca coagulata) NL008 1287 GAGTTGTTGGTGTTCTTTTGGGATG 66522334 (Apis mellifera) NL008 1288 TTTCAAACAGTTTTGCAGTTCC 75735289 (Tribolium castaneum) NL008 1289 GAGTTGTTGGTGTTCTTTTGGGATG 110762109 (Apis mellifera) NL010_1 1290 AAGGACCTGACTGCCAAGCAG 2761430 (Drosophila melanogaster) NL010_1 1291 GCCAAGCAGATCCAGGACATG 49559867 (Boophilus microplus) NL010_1 1292 TGCTCGAAGAGCTACGTGTTCCG 49559867 (Boophilus microplus) NL010_1 1293 AAGAGCTACGTGTTCCGTGGC 92043082 (Drosophila willistoni) NL010_1 1294 AAGGACCTGACTGCCAAGCAG 92481328 (Drosophila erecta) 28571527 (Drosophila melanogaster) NL010_2 1295 ATGGACACATTTTTCCAAATTCTCAT 33427937 (Glossina morsitans) NL010_2 1296 ACCAGCAGTATTCAACCCGACA 47520567 (Acyrthosiphon pisum) NL010_2 1297 TATTGATGGACACATTTTTCCA 47520567 (Acyrthosiphon pisum) NL010_2 1298 TTCAACAACAGTCCTGATGAAAC 55891325 (Locusta migratoria) NL010_2 1299 ATGGACACATTTTTCCAAATT 56151768 (Rhynchosciara americana), 75736992 (Tribolium castaneum) NL010_2 1300 CCGCAGTTCATGTACCATCTGCG 6932015 (Anopheles gambiae), 29558345 (Bombyx mori) NL010_2 1301 ATGGACACATTTTTCCAAATT 91086194 (Tribolium castaneum) NL011 1302 AAGAAGTATGTTGCCACCCTTGG 21640529 (Amblyomma variegatum) NL011 1303 GACATCAAGGACAGGAAAGTCAAGGCCAAGAGC 25959135 (Meladema coriacea) ATAGT NL011 1304 CAACTACAACTTCGAGAAGCCGTTCCTGTGG 25959135 (Meladema coriacea), 77646995 (Aedes aegypti) NL011 1305 TACAAGAACGTTCCCAACTGGCA 3114090 (Drosophila melanogaster) NL011 1306 TGCGAAAACATTCCCATTGTACT 37951963 (Ips pini) NL011 1307 AGGAAGAAGAACCTTCAGTACTACGA 40544671 (Tribolium castaneum) NL011 1308 AGCAACTACAACTTCGAGAAGCC 49565237 (Boophilus microplus), 49538692 (Rhipicephalus appendiculatus) NL011 1309 AACAAAGTAGACATCAAGGACAGGAAAGTCAA 76552920 (Spodoptera frugiperda) NL011 1310 CCCAACTGGCACAGAGATTTAGTG 78230577 (Heliconius erato/himera mixed EST library) NL011 1311 GATGGTGGTACCGGCAAAACTAC 78538667 (Glossina morsitans) NL011 1312 TACAAGAACGTTCCCAACTGGCAC 84267747 (Aedes aegypti) NL011 1313 AACAAAGTAGACATCAAGGACAGGAAAGTCAA 110263840 (Spodoptera frugiperda) NL011 1314 TTGACTTTCCTGTCCTTGATGTC 90136305 (Bicyclus anynana) NL011 1315 GACATCAAGGACAGGAAAGTCAAGGC 90813103 (Nasonia vitripennis) NL011 1316 AGGAAGAAGAACCTTCAGTACTACGA 91091115 (Tribolium castaneum) NL011 1317 GATGTCGTAGTACTGAAGGTTCTT 90136305 (Bicyclus anynana) NL011 1318 CAACTACAACTTCGAGAAGCCGTTCCTGTGG 90977910 (Aedes aegypti) NL011 1319 CCAACCTGGAGTTCGTCGCCATGCC 92465523 (Drosophila erecta) NL011 1320 GAATTTGAAAAGAAGTATGTTGC 113015058 (Bemisia tabaci) NL011 1321 CTTCAGTACTACGACATCAGTGCGAA 110086408 (Amblyomma cajennense) NL011 1322 AGCAACTACAACTTCGAGAAGCC 110086408 (Amblyomma cajennense) NL011 1323 AAGCTGATCGGTGACCCCAACCTGGAGTT 110086408 (Amblyomma cajennense) NL012 1324 CACAGTTTGAACAGCAAGCTGG 29552409 (Bombyx mori) NL012 1325 GCAGCAGACGCAGGCACAGGTAGA 77823921 (Aedes aegypti) NL012 1326 CACAGTTTGAACAGCAAGCTGG 94435913 (Bombyx mori) NL013 1327 CAAGCGAAGATGTTGGACATGCT 15536506 (Drosophila melanogaster) NL013 1328 ATGGTGGTGGGCTGGTACCACTCGCACCC 49547019 (Rhipicephalus appendiculatus) NL013 1329 GTGGTGGGCTGGTACCACTCGCACCC 58079586 (Amblyomma americanum) NL013 1330 GTGGGCTGGTACCACTCGCACCC 82848521 (Boophilus microplus) NL013 1331 AAGATGTTGGACATGCTAAAGCAGACAGG 92229701 (Drosophila willistoni) NL013 1332 TGTCGGGTGTCGACATCAACAC 92962655 (Drosophila ananassae) NL013 1333 GTTCCCATGGAAGTTATGGGC 112433067 (Myzus persicae) NL013 1334 GTGGGCTGGTACCACTCGCACCC 110085175 (Amblyomma cajennense) NL014 1335 GAGATCGATGCCAAGGCCGAGGA 1033187 (Drosophila melanogaster) NL014 1336 GAATTCAACATTGAAAAGGGA 16900951 (Ctenocephalides felis) NL014 1337 GAAGAATTCAACATTGAAAAGGG 47518467 (Acyrthosiphon pisum) NL014 1338 GAAGCCAATGAGAAAGCCGAAGA 47518467 (Acyrthosiphon pisum) NL014 1339 TCGTCAAACATGCTGAACCAAGC 61954844 (Tribolium castaneum) NL014 1340 TTTCATTGAGCAAGAAGCCAATGA 62239529 (Diabrotica virgifera), 76169390 (Diploptera punctata), 61954844 (Tribolium castaneum), 16900951 (Ctenocephalides felis) NL014 1341 CAAGAAGCCAATGAGAAAGCCGA 111160670 (Myzus persicae) NL014 1342 TTTCATTGAGCAAGAAGCCAATGA 91092061 (Tribolium castaneum) NL014 1343 AGAAGCCAATGAGAAAGCCGA 112432414 (Myzus persicae) NL014 1344 TCGTCAAACATGCTGAACCAAGC 91092061 (Tribolium castaneum) NL014 1345 GCCAATGAGAAAGCCGAAGAGATCGATGCCAA 93001435 (Drosophila grimshawi) NL014 1346 AAAGCCGAAGAGATCGATGCCAA 92936169 (Drosophila virilis) NL014 1347 GAGATCGATGCCAAGGCCGAGGA 24644299 (Drosophila melanogaster) NL014 1348 GAAGAATTCAACATTGAAAAGGG 86463006 (Acyrthosiphon pisum) 111160670 (Myzus persicae) NL014 1349 GAAGAATTCAACATTGAAAAGGGAAGGCT 90819999 (Graphocephala atropunctata) NL014 1350 AAGAATTCAACATTGAAAAGGG 111158385 (Myzus persicae) NL015 1351 GAGGTGCTGCGCATCCACACCAA 18887285 (Anopheles gambiae) NL015 1352 ATCCATGTGCTGCCCATTGATGA 21641659 (Amblyomma variegatum) NL015 1353 CATGTGCTGCCCATTGATGAT 22039735 (Ctenocephalides felis) NL015 1354 CTGCGCATCCACACCAAGAACATGAAGTTGG 22474136 (Helicoverpa armigera) NL015 1355 TTCTTCTTCCTCATCAACGGACC 49552586 (Rhipicephalus appendiculatus) NL015 1356 GAGATGGTGGAGTTGCCGCTG 58371722 (Lonomia obliqua) NL015 1357 CAGATCAAAGAGATGGTGGAG 92947821 (Drosophila ananassae) NL015 1358 ATCAACGGACCCGAGATTATG 92947821 (Drosophila ananassae) NL015 1359 ATGAAGATGATGGCCGGTGCGTT 92470977 (Drosophila erecta) NL015 1360 CCGGCCATCATCTTCATCGATGAG 92480997 (Drosophila erecta) NL015 1361 ATCATCTTCATCGATGAGCTGGACGC 99007898 (Leptinotarsa decemlineata) NL015 1362 CAGCTGCTGACGCTGATGGACGG 92941440 (Drosophila virilis) NL015 1363 ATCGACATTGGCATTCCCGATGCCACCGG 92947821 (Drosophila ananassae) NL016 1364 TCTATGGAGAACGTGTGCCTGTTCTTGAAC 27372076 (Spodoptera littoralis) NL016 1365 TACCAGTGCGAGAAGCACGTGCT 2921501 (Culex pipiens) NL016 1366 ATGGAGAACGTGTGCCTGTTCTTGAACCTGGC 31206154 (Anopheles gambiae str. PEST) NL016 1367 CGTGGCCAGAAAATCCCCATCTT 3945243 (Drosophila melanogaster) NL016 1368 TGGCCTACCAGTGCGAGAAGCACGTG 4680479 (Aedes aegypti) NL016 1369 TGGCCACCATCTACGAGCGCGCCGG 53883819 (Plutella xylostella) NL016 1370 ATGGAGAACGTGTGCCTGTTCTTGAA 67883622 (Drosophila pseudoobscura) NL016 1371 CCCGAGGAAATGATCCAGACTGG 67883622 (Drosophila pseudoobscura) NL016 1372 TGGCCTACCAGTGCGAGAAGCACGTGCT 67883622 (Drosophila pseudoobscura), 31206154 (Anopheles gambiae str. PEST) NL016 1373 GAGGAGGTGCCCGGCCGTCGTGGTTTCCCCGG 67896654 (Drosophila pseudoobscura) TTACATGTACACCGAT NL016 1374 GAGGGTCGCAACGGCTCCATCAC 67896654 (Drosophila pseudoobscura) NL016 1375 GAGGTGCCCGGCCGTCGTGGTTTCCCCGGTTAC 75710699 (Tribolium castaneum) ATGTACACCGAT NL016 1376 ATGGAGAACGTGTGCCTGTTCTTGAAC 76554661 (Spodoptera frugiperda) NL016 1377 TGGCCTACCAGTGCGAGAAGCACGTGCTCGTCA 9992660 (Drosophila melanogaster) TCCT NL016 1378 CGTCGTGGTTTCCCCGGTTACATGTACACCGAT 9992660 (Drosophila melanogaster), 2921501 (Culex pipiens), 62239897 (Diabrotica virgifera) NL016 1379 TGGTCGCGTATCTATCCCGAGGAAATGATCCAG 92999374 (Drosophila grimshawi) AC NL016 1380 TGGTCGCGTATCTATCCCGAGGAAATGATCCAG 92940538 (Drosophila virilis) ACTGG NL016 1381 TCTATGGAGAACGTGTGCCTGTTCTTGAAC 92938622 (Drosophila virilis) NL016 1382 ATGGAGAACGTGTGCCTGTTCTTGAAC 92950254 (Drosophila ananassae) 90137502 (Spodoptera frugiperda) NL016 1383 AACGTGTGCCTGTTCTTGAAC 92946927 (Drosophila ananassae) NL016 1384 TGGCCTACCAGTGCGAGAAGCACGTGCT 24646342 (Drosophila melanogaster) 92231646 (Drosophila willistoni) NL016 1385 TGGCCTACCAGTGCGAGAAGCACGTGCTCGTCA 107256717 (Drosophila melanogaster) TCCT NL016 1386 GCCTACCAGTGCGAGAAGCACGTGCT 92985459 (Drosphila grimshawi) NL016 1387 GAGGAGGTGCCCGGCCGTCGTGGTTTCCCCGG 92938622 (Drosophila virilis) TTACATGTACAC NL016 1388 GAGGAGGTGCCCGGCCGTCGTGGTTTCCCCGG 92477818 (Drosophila erecta) TTACATGTACACCGAT NL016 1389 GAGGTGCCCGGCCGTCGTGGTTTCCCCGGTTAC 91090030 (Tribolium castaneum) ATGTACACCGAT NL016 1390 CGTCGTGGTTTCCCCGGTTACAT 104530890 (Belgica antarctica) NL016 1391 CGTCGTGGTTTCCCCGGTTACATGTACACCGAT 92981037 (Drosophila grimshawi) 24646342 (Drosophila melanogaster) NL016 1392 CGTGGTTTCCCCGGTTACATGTACACCGAT 92957249 (Drosophila ananassae) NL016 1393 ATCGGTGTACATGTAACCGGGGAAACCA 103744758 (Drosophila melanogaster) NL016 1394 CGTCCGGCGCGCTCGTAGATGGT 91829127 (Bombyx mori) NL016 1395 GAGGGTCGCAACGGCTCCATCAC 92957249 (Drosophila ananassae) NL018 1396 CGGACGTGGCCTGGTTCATCA 92479742 (Drosophila erecta) NL019 1397 GTGGTGTACGACTGCACCGACCAGGAGTCGTTC 84343006 (Aedes aegypti) AACAAC NL019 1398 GAAAGTTACATCAGTACCATTGGTGT 113018639 (Bemisia tabaci) NL019 1399 CACCGACCAGGAGTCGTTCAACAAC 85857059 (Aedes aegypti) NL019 1400 AGTACCATTGGTGTAGATTTTAAAAT 91087112 (Tribolium castaneum) NL019 1401 ATTGGTGTAGATTTTAAAATTAG 78542465 (Glossina morsitans) NL019 1402 GGTGTAGATTTTAAAATTAGAAC 92232411 (Drosophila willistoni) NL019 1403 GGTGTAGATTTTAAAATTAGAACAAT 90986845 (Aedes aegypti) NL019 1404 GTTCTAATTTTAAAATCTACAC 92043152 (Drosophila willistoni) NL019 1405 TGGGACACGGCCGGCCAGGAG 91091115 (Tribolium castaneum) NL019 1406 TGGGACACGGCCGGCCAGGAGCG 90982219 (Aedes aegypti) NL019 1407 TGGGACACGGCCGGCCAGGAGCGGT 94433465 (Bombyx mori) NL019 1408 GACCAGCTGGGCATTCCGTTCCT 10708384 (Amblyomma amenicanum) NL019 1409 ATTGGTGTAGATTTTAAAATT 18864897 (Anopheles gambiae) NL019 1410 TGGGACACGGCCGGCCAGGAGCGGTT 18888926 (Anopheles gambiae) NL019 1411 CAGGAGCGGTTCCGCACGATCAC 21640713 (Amblyomma variegatum) NL019 1412 ATTGGTGTAGATTTTAAAATTAGAAC 22039832 (Ctenocephalides felis) NL019 1413 ATTGGTGTAGATTTTAAAATTAG 33378174 (Glossina morsitans) NL019 1414 TGGGACACGGCCGGCCAGGAG 3738872 (Manduca sexta), 25959135 (Meladema coriacea), 40542849 (Tribolium castaneum), 67840088 (Drosophila pseudoobscura) NL019 1415 TGGGACACGGCCGGCCAGGAGCGGT 4161805 (Bombyx mori) NL019 1416 GATGACACATACACAGAAAGTTACATCAGTAC 50562545 (Homalodisca coagulata), 71047909 (Oncometopia nigricans) NL019 1417 ACGGCCGGCCAGGAGCGGTTCCG 58378591 (Anopheles gambiae str. PEST) NL019 1418 AGTACCATTGGTGTAGATTTTAAAAT 61954135 (Tribolium castaneum) NL019 1419 TAAAGCTTCAGATTTGGGACAC 68758530 (Acanthoscurnia gomesiana) NL019 1420 ATTTGGGACACGGCCGGCCAGGA 77667315 (Aedes aegypti) NL019 1421 GTGGTGTACGACTGCACCGACCAGGAGTCGTTC 77705629 (Aedes aegypti) AACAAC NL019 1422 GGTGTAGATTTTAAAATTAGAACAAT 77890715 (Aedes aegypti) NL019 1423 TGGGACACGGCCGGCCAGGAGCG 82851662 (Boophilus microplus), 49536894 (Rhipicephalus appendiculatus) NL022 1424 TCTTCCTCACCGGTCAGGAGGAGAT 6928515 (Anopheles gambiae) NL022 1425 AAATTCTCCGAGTTTTTCGACGATGC 91082872 (Tribolium castaneum) NL022 1426 TTCCTCACCGGTCAGGAGGAGAT 90976120 (Aedes aegypti) NL022 1427 TAGTATTGGCCACAAATATTGCAGA 92042565 (Drosophila willistoni) NL023 1428 TATTTGAACATATGGGTGCCGCA 20384699 (Plutella xylostella) NL023 1429 GAGGGAGAGGAAATGTGGAATCC 22085301 (Helicoverpa armigera) NL023 1430 CCGAAGATTGTCTGTATTTGAA 27531022 (Apis meilifera) NL023 1431 GATTCCGTTTGCGAAACCTCC 57929927 (Anopheles gambiae str. PEST) NL023 1432 GGTGCGTTCGGCTTCCTCTACCT 58380563 (Anopheles gambiae str. PEST) NL023 1433 CAATTCAATGCTAGGGAAAGG 110759012 (Apis mellifera) NL023 1434 GAGGGAGAGGAAATGTGGAATCC 55793188 (Helicoverpa assulta) NL023 1435 CCGAAGATTGTCTGTATTTGAA 58585075 (Apis mellifera) NL023 1436 GACGTCATCGTCGCCTCCATGCA 91077117 (Tribolium castaneum) NL027 1437 GGAGACCCTGGAGCTGGTGCG 49543279 (Rhipicephalus appendiculatus) -
TABLE 4-CS Target ID SEQ ID NO Sequence * Example Gi-number and species CS001 1730 AAAGCATGGATGTTGGACAAA 73619372 (Aphis gossypii); 77325485 (Chironomus tentans); 22474232 (Helicoverpa armigera); 37951951 (Ips pini); 60305420 (Mycetophagus quadripustulatus); 84647995 (Myzus persicae) CS001 1731 AAAGCATGGATGTTGGACAAACT 40877657 (Bombyx mori); 103783745 (Heliconius erato); 55904580 (Locusta migratoria); 101413238 (Plodia interpunctella) CS001 1732 AACCGGCTCAAGTACGCGCTCAC 22474232 (Helicoverpa armigera) CS001 1733 AACCGGCTCAAGTACGCGCTCACCGG 90134075 (Bicyclus anynana) CS001 1734 AAGATCATGGACTTCATCAAGTT 90134075 (Bicyclus anynana) CS001 1735 ACCAGATTGAACAACGTGTTCAT 71536878 (Diaphorina citri) 3658573 (Manduca sexta) CS001 1736 ATCATGGACTTCATCAAGTTTGAATC 103783745 (Heliconius erato) CS001 1737 CAAGATCATGGACTTCATCAAGTT 3478550 (Antheraea yamamai) CS001 1738 CCCCACAAGTTGCGCGAGTGC 63011732 (Bombyx mori) CS001 1739 CCCGCTGGATTTATGGATGTTGT 101403940 (Plodia interpunctella) CS001 1740 CCTCCAAGATCATGGACTTCATCAAGTT 22474232 (Helicoverpa armigera) CS001 1741 CCTGCCGCTGGTGATCTTCCT 27597800 (Anopheles gambiae) CS001 1742 CGACGGGCCCCAAGAACGTGCC 22474232 (Helicoverpa armigera) CS001 1743 CTCATCAAGGTCAACGACTCC 103783745 (Heliconius erato) 112350001 (Helicoverpa armigera) 101418268 (Plodia interpunctella) CS001 1744 CTCATCAAGGTCAACGACTCCATCCAGCTCGAC 3738704 (Manduca sexta) AT CS001 1745 CTCATCAAGGTCAACGACTCCATCCAGCTCGAC 53884106 (Plutella xylostella) ATCGCCACCT CS001 1746 CTGCCGCTGGTGATCTTCCTC 27603050 (Anopheles gambiae) CS001 1747 GACCCCACATATCCCGCTGGATT 103783745 (Heliconius erato) CS001 1748 GCAGCGACTTATCAAAGTTGA 109978109 (Gryllus pennsylvanicus) CS001 1749 GCATGGATGTTGGACAAACTGGG 67899746 (Drosophila pseudoobscura) CS001 1750 GCCACCTCCAAGATCATGGACTTCAT 110259010 (Spodoptera frugiperda) CS001 1751 GCGCGTGGCGACGGGCCCCAAGAACGTGCC 53884106 (Plutella xylostella) CS001 1752 GCTGGATTTATGGATGTTGTTT 29553519 (Bombyx mori) CS001 1753 GGCTCAAGTACGCGCTCACCGG 5498893 (Antheraea yamamai) CS001 1754 GTGGGCACCATCGTGTCCCGCGAG 3953837 (Bombyx mandarina) 53884106 (Plutella xylostella) CS001 1755 GTGGGCACCATCGTGTCCCGCGAGCG 3478550 (Antheraea yamamai) CS001 1756 GTGGGCACCATCGTGTCCCGCGAGCGACATCC 22474232 (Helicoverpa armigera) CGG CS001 1757 TAAAGCATGGATGTTGGACAA 58371410 (Lonomia obliqua) CS001 1758 TAAAGCATGGATGTTGGACAAA 60311985 (Papilio dardanus) 31366663 (Toxoptera citricida) CS001 1759 TAAAGCATGGATGTTGGACAAACT 109978109 (Gryllus pennsylvanicus) CS001 1760 TAAAGCATGGATGTTGGACAAACTGGG 98994282 (Antheraea mylitta) CS001 1761 TACAAGCTGTGCAAGGTGCGGCGCGTGGCGAC 98993531 (Antheraea mylitta) GGGCCC CS001 1762 TACAAGCTGTGCAAGGTGCGGCGCGTGGCGAC 5498893 (Antheraea yamamai) GGGCCCCAA CS001 1763 TACCCCGACCCACTCATCAAGGT 90134075 (Bicyclus anynana) CS001 1764 TGAACAACGTGTTCATAATCGG 98993531 (Antheraea mylitta) CS001 1765 TGCGCGAGTGCCTGCCGCTGGT 22474232 (Helicoverpa armigera) CS001 1766 TGTATGATCACGGGAGGCCGTAACTTGGG 60311445 (Euclidia glyphica) CS001 1767 TGTATGATCACGGGAGGCCGTAACTTGGGGCG 3953837 (Bombyx mandarina) CS001 1768 TGTATGATCACGGGAGGCCGTAACTTGGGGCG 91826697 (Bombyx mori) CGTGGGCACCATCGTGTCCCGCGAG CS001 1769 TGTGCAAGGTGCGGCGCGTGGCGACGGGCCC 3478550 (Antheraea yamamai) CAAG CS001 1770 TTGAACAACGTGTTCATAATCGGCAAGGGCACG 3953837 (Bombyx mandarina) AA 40915191 (Bombyx mori) CS002 1771 ATTGAGGCCCAAAGGGAAGCGCTAGAAGG 91849872 (Bombyx mori) CS002 1772 CACGATCTGATGGATGACATTG 33498783 (Anopheles gambiae) CS002 1773 GAGTTTCTTTAGTAAAGTATTCGGTGG 110762684 (Apis mellifera) CS002 1774 TATGAAAAGCAGCTTACCCAGAT 49552807 (Rhipicephalus appendiculatus) CS003 1175 AGGCACATCCGTGTCCGCAAGCA 10707186 (Amblyomma americanum) CS003 1776 AAGATTGAGGACTTCTTGGAA 60295192 (Homalodisca coagulata) CS003 1777 AAGCACATTGACTTCTCGCTGAA 92219983 (Drosophila willistoni) CS003 1778 ATCAGACAGAGGCACATCCGTGT 27260897 (Spodoptera frugiperda) CS003 1779 ATCCGTAAGGCTGCCCGTGAG 101413529 (Plodia interpunctella) CS003 1780 ATCCGTAAGGCTGCCCGTGAGCTG 92042852 (Drosophila willistoni) CS003 1781 ATCCGTAAGGCTGCCCGTGAGCTGCT 92959651 (Drosophila ananassae) 112349903 (Helicoverpa armigera) CS003 1782 ATCCGTAAGGCTGCCCGTGAGCTGCTCAC 90138123 (Spodoptera frugiperda) CS003 1783 CACATCCGTGTCCGCAAGCAAG 60306665 (Sphaerius sp.) CS003 1784 CACATCCGTGTCCGCAAGCAAGT 77329341 (Chironomus tentans) CS003 1785 CACATCCGTGTCCGCAAGCAAGTTG 60306676 (Sphaerius sp.) CS003 1786 CGCAACAAGCGTGAGGTGTGG 92473214 (Drosophila erecta) 67888665 (Drosophila pseudoobscura) CS003 1787 CGTGTCCGCAAGCAAGTTGTGAACATCCC 90134575 (Bicyclus anynana) 29553137 (Bombyx mori) CS003 1788 CTCGCTGAAGTCTCCGTTCGGCGGCGGCCG 3986375 (Antheraea yamamai) CS003 1789 CTCGGTCTGAAGATTGAGGACTT 112349903 (Helicoverpa armigera) 49532931 (Plutella xylostella) CS003 1790 CTGGACTCTGGCAAGCACATTGACTTCTC 29553137 (Bombyx mori) 58371398 (Lonomia obliqua) CS003 1791 GACTTCTCGCTGAAGTCTCCGTTCGGCGGCGG 60312414 (Papilio dardanus) CS003 1792 GACTTCTCGCTGAAGTCTCCGTTCGGCGGCGG 49532931 (Plutella xylostella) CCG CS003 1793 GAGGAGAAAGACCCTAAGAGGTTATTCGAAGG 37952462 (Ips pini) TAA CS003 1794 GATCCGTAAGGCTGCCCGTGA 67568544 (Anoplophora glabripennis) CS003 1795 GATCCGTAAGGCTGCCCGTGAGCTGCT 67843629 (Drosophila pseudoobscura) 56772258 (Drosophila virilis) CS003 1796 GATTATGTACTCGGTCTGAAGATTGAGGACTT 101413529 (Plodia interpunctella) CS003 1797 GGTCTGAAGATTGAGGACTTCTTGGA 2699490 (Drosophila melanogaster) CS003 1798 GTGTGGAGGGTGAAGTACACGCT 60312414 (Papilio dardanus) CS003 1799 GTGTTCAAGGCTGGTCTAGCTAAGTC 78230982 (Heliconius erato/himera mixed EST library) CS003 1800 GTGTTGGATGAGAAGCAGATGAAGCTCGATTAT 112349903 (Helicoverpa armigera) GT CS003 1801 TGAAGATTGAGGACTTCTTGGA 3986375 (Antheraea yamamai) CS003 1802 TGGACTCTGGCAAGCACATTGACTTCTC 78230982 (Heliconius erato/himera mixed EST library) CS003 1803 TGGATGAGAAGCAGATGAAGCT 60312414 (Papilio dardanus) CS003 1804 TGGTCTCCGCAACAAGCGTGAGGT 76552467 (Spodoptera frugiperda) CS003 1805 TGGTCTCCGCAACAAGCGTGAGGTGTGG 33528372 (Trichoplusia ni) CS006 1806 CGTATGACAATTGGTCACTTGATTGA 91831926 (Bombyx mori) CS006 1807 GAAGATATGCCTTTCACTTGTGAAGG 55801622 (Acyrthosiphon pisum) CS006 1808 GGAAAAACTATAACTTTGCCAGAAAA 40926289 (Bombyx mori) CS006 1809 GGTGATGCTACACCATTTAACGATGCTGT 31366154 (Toxoptera citricida) CS006 1810 TCTCGTATGACAATTGGTCACTTGAT 49201759 (Drosophila melanogaster) CS006 1811 CTGTCAACGTGCAGAAGATCTC 49573116 (Boophilus microplus) CS007 1812 TGGATGAATGTGACAAAATGCTTGAA 84114516 (Blomia tropicalis) CS007 1813 TTTATGCAAGATCCTATGGAAGT 84114516 (Blomia tropicalis) CS007 1814 AAATTTATGCAAGATCCTATGGAAGTTTATGT 78525380 (Glossina morsitans) CS007 1815 AATATGACTCAAGATGAGCGTCT 90137538 (Spodoptera frugiperda) CS007 1816 ATGACTCAAGATGAGCGTCTCTCCCG 103792212 (Heliconius erato) CS007 1817 ATGCAAGATCCTATGGAAGTTTA 77336752 (Chironomus tentans) CS007 1818 ATGCAAGATCCTATGGAAGTTTATGT 77873166 (Aedes aegypti) CS007 1819 CGCTATCAGCAGTTCAAAGATTTCCAGAAG 77873166 (Aedes aegypti) CS007 1820 GAAAATGAAAAGAATAAGAAG 110759359 (Apis mellifera) 78525380 (Glossina morsitans) CS007 1821 GAAGTTCAACATGAATGTATTCC 110759359 (Apis mellifera) CS007 1822 GATGAGCGTCTCTCCCGCTATCA 40932719 (Bombyx mori) CS007 1823 TGCCAATTCAGAAAGATGAAGAAGT 110759359 (Apis mellifera) CS007 1824 TGTAAGAAATTTATGCAAGATC 45244844 (Bombyx mori) CS009 1825 AGGTGTGCGACGTGGACATCA 92460383 (Drosophila erecta) CS009 1826 GACTTGAAGGAGCACATCAGGAA 29534871 (Bombyx mori) CS009 1827 GGCCAGAACATCCACAACTGTGA 29534871 (Bombyx mori) CS009 1828 TCTTGCGAGGGAGAGAATCCA 111005781 (Apis mellifera) CS011 1829 AAAACTATTGTTTTCCACAGAAAAAAGAA 86465126 (Bombyx mori) CS011 1830 ATCAAGGACAGAAAAGTCAAAGC 78230577 (Heliconius erato/himera mixed EST library) CS011 1831 ATCTCTGCCAAGTCAAACTACAA 101406907 (Plodia interpunctella) CS011 1832 CAATGTGCCATCATCATGTTCGA 110242457 (Spodoptera frugiperda) CS011 1833 CCCAACTGGCACAGAGATTTAGTGCG 78230577 (Heliconius erato/himera mixed EST library) CS011 1834 GACACTTGACTGGAGAGTTCGAGAAAAGATA 101410627 (Plodia interpunctella) CS011 1835 GATATCAAGGACAGAAAAGTCAA 60312108 (Papillo dardanus) CS011 1836 GCCAAGTCAAACTACAATTTCGA 67873076 (Drosophila pseudoobscura) CS011 1837 GCTGGCCAAGAAAAGTTTGGTGGT 111031693 (Apis mellifera) CS011 1838 GGCCAAGAAAAGTTTGGTGGTCTCCG 84267747 (Aedes aegypti) CS011 1839 TACAAAAATGTACCCAACTGGCA 92963426 (Drosophila grimshawi) 37951963 (Ips pini) CS011 1840 TACAAAAATGTACCCAACTGGCACAGAGA 60312108 (Papilio dardanus) CS011 1841 TATGGGATACTGCTGGCCAAGAA 40929360 (Bombyx mori) CS011 1842 TATGGGATACTGCTGGCCAAGAAA 110749704 (Apis mellifera) CS011 1843 TGGGATACTGCTGGCCAAGAA 73618835 (Aphis gossypii) 112432160 (Myzus persicae) CS011 1844 TGTGCCATCATCATGTTCGATGT 84346664 (Aedes aegypti) CS011 1845 TTGACTGGAGAGTTCGAGAAA 90136305 (Bicyclus anynana) 78230577 (Heliconius erato/himera mixed EST library) 60312108 (Papilio dardanus) CS011 1846 TTGACTGGAGAGTTCGAGAAAA 86465126 (Bombyx mori) 110262261 (Spodoptera frugiperda) CS011 1847 TGGGATACTGCTGGCCAAGAA 21639295 (Sarcoptes scabiei) CS013 1848 GATCCCATTCAGTCTGTCAAGGG 3626535 (Drosophila melanogaster) CS013 1849 TTCCAAGCAAAGATGTTGGATATGTTGAA 112433067 (Myzus persicae) CS014 1850 AAAAAGATCCAATCTTCGAACATGCTGAA 103775905 (Heliconius erato) CS014 1851 AAACAAGTGGAACTCCAGAAAAA 101403826 (Plodia interpunctella) CS014 1852 AAAGTGCGTGAGGACCACGTACG 87266590 (Choristoneura fumiferana) 3738660 (Manduca sexta) CS014 1853 AAGATCAGCAACACTCTGGAGTC 58371699 (Lonomia obliqua) CS014 1854 AAGATCAGCAACACTCTGGAGTCTCG 91848497 (Bombyx mori) CS014 1855 AAGATCCAATCTTCGAACATG 77790417 (Aedes aegypti) CS015 1883 CTGCCCCGATGAGAAGATCCGCATGAACCG 92948836 (Drosophila ananassae) CS015 1884 GAGAAGATCCGCATGAACCGCGT 4691131 (Aedes aegypti) 92466521 (Drosophila erecta) 15070638 (Drosophila melanogaster) CS015 1885 GTACATATATTGCCCATTGAT 90133859 (Bicyclus anynana) CS015 1886 TCATCGCACGTGATCGTAATGGC 22474136 (Helicoverpa armigera) CS015 1887 TTCATGGTTCGCGGGGGCATG 29551125 (Bombyx mori) CS016 1888 AAATCGGTGTACATGTAACCTGGGAAACCACG 55797015 (Acyrthosiphon pisum) 73615307 (Aphis gossypii) CS016 1889 AAGTTGTCCTCGTGGTCGTCCA 91826756 (Bombyx mori) CS016 1890 ACAGATCTGGGCGGCAATTTC 18950388 (Anopheles gambiae) 31206154 (Anopheles gambiae str. PEST) CS016 1891 ACAGCCTTCATGGCCTGCACGTCCTT 76169888 (Diploptera punctata) 92953069 (Drosophila ananassae) 92477149 (Drosophila erecta) 8809 (Drosophila melanogaster) 55694467 (Drosophila yakuba) CS016 1892 ACATCAGAGTGGTCCTTGCGGGTCAT 55694467 (Drosophila yakuba) 110248186 (Spodoptera frugiperda) CS016 1893 ACCAGCACGTGTTTCTCACACTGGTA 91829127 (Bombyx mori) CS016 1894 ACCTCCTCACGGGCGGCGGACAC 237458 (Heliothis virescens) 27372076 (Spodoptera littoralis) CS016 1895 ACGACAGCCTTCATGGCCTGCACGTCCTT 67896654 (Drosophila pseudoobscura) CS016 1896 ACGTAGATCTGTCCCTCAGTGATGTA 53883819 (Plutella xylostella) CS016 1897 AGAGCCTCCGCGTACGAAGACATGTC 53883819 (Plutella xylostella) CS016 1898 AGCAATGGAGTTCATCACGTC 60295607 (Homalodisca coagulata) CS016 1899 AGCAGCTGCCAGCCGATGTCCAG 92953069 (Drosophila ananassae) 92477149 (Drosophila erecta) 55694467 (Drosophila yakuba) 112349870 (Helicoverpa armigera) 237458 (Heliothis virescens) 9713 (Manduca sexta) 110242332 (Spodoptera frugiperda) CS016 1900 AGCATCTCCTTGGGGAAGATACG 63005818 (Bombyx mori) 92967975 (Drosophila mojavensis) 92938364 (Drosophila virilis) 92231646 (Drosophila willistoni) 237458 (Heliothis virescens) CS016 1901 AGGGCTTCCTCACCGACGACAGCCTTCATGGC 4680479 (Aedes aegypti) CTG CS016 1902 ATACCAGTCTGGATCATTTCCTCAGG 60295607 (Homalodisca coagulata) CS016 1903 ATACGGGACCAGGGGTTGATGGGCTG 92953552 (Drosophila ananassae) CS016 1904 ATAGCGGAGATACCAGTCTGGATCAT 237458 (Heliothis virescens) 76554661 (Spodoptera frugiperda) CS016 1905 ATCTGGGCGGCAATTTCGTTGTG 83937869 (Lutzomyia longipalpis) CS016 1906 ATGGCAGACTTCATGAGACGA 55894053 (Locusta migratoria) CS016 1907 ATGGTGGCCAAATCGGTGTACATGTAACC 92965644 (Drosophila grimshawi) CS016 1908 ATGGTGGCCAAATCGGTGTACATGTAACCT 92969578 (Drosophila grimshawi) CS016 1909 ATGGTGGCCAAATCGGTGTACATGTAACCTGG 92231646 (Drosophila willistoni) GAAACCACG CS016 1910 ATTCAAGAACAGGCACACGTTCTCCATGGAGCC 67841091 (Drosophila pseudoobscura) GTTCTCCTCGAAGTCCTGCTTGAAGAA CS016 1911 ATTGGGGGACCTTTGTCAATGGGTTTTCC 49395165 (Drosophila melanogaster) 99009492 (Leptinotarsa decemlineata) CS016 1912 CACACGTTCTCCATGGAGCCGTTCTCCTCGAAG 92477818 (Drosophila erecta) TCCTGCTTGAAGAA CS016 1913 CACTGGTAGGCCAAGAACTCAGC 4680479 (Aedes aegypti) CS016 1914 CATCTCCTTGGGGAAGATACG 16899457 (Ctenocephalides felis) 9713 (Manduca sexta) CS016 1915 CCCTCACCGATGGCAGACTTCAT 4680479 (Aedes aegypti) 92924977 (Drosophila virilis) 110248186 (Spodoptera frugiperda) CS016 1916 CCGATGGCAGACTTCATGAGACG 71049259 (Oncometopia nigricans) CS016 1917 CCGTCTCCATGTTCACACCCATGGCGGCGAAC 33547658 (Anopheles gambiae) ACGATGGC CS016 1918 CCGTTCTCCTCGAAGTCCTGCTTGAAGAA 31206154 (Anopheles gambiae str. PEST) 8809 (Drosophila melanogaster) CS016 1919 CCGTTCTCCTCGAAGTCCTGCTTGAAGAACC 101403557 (Plodia interpunctella) CS016 1920 CGAGCAATGGAGTTCATCACGTCGATAGCGGA 27372076 (Spodoptera littoralis) GATACCAGTCTGGATCAT CS016 1921 CGGGCCGTCTCCATGTTCACACCCATGGCGGC 31206154 (Anopheles gambiae str. PEST) GAACACGATGGC CS016 1922 CGTCCGGGCACCTCCTCACGGGCGGC 18883474 (Anopheles gambiae) 31206154 (Anopheles gambiae str. PEST) CS016 1923 CGTCCGGGCACCTCCTCACGGGCGGCGGACAC 9713 (Manduca sexta) 110248186 (Spodoptera frugiperda) CS016 1924 CTACAGATCTGGGCGGCAATTTC 91826756 (Bombyx mori) 9713 (Manduca sexta) 27372076 (Spodoptera littoralis) CS016 1925 CTACAGATCTGGGCGGCAATTTCGTTGTG 237458 (Heliothis virescens) 76554661 (Spodoptera frugiperda) CS016 1926 CTCGTAGATGGTGGCCAAATC 53883819 (Plutella xylostella) CS016 1927 CTCGTAGATGGTGGCCAAATCGGTGTACATGTA 18883474 (Anopheles gambiae) 31206154 (Anopheles gambiae str. PEST) CS016 1928 CTCGTAGATGGTGGCCAAATCGGTGTACATGTA 92953069 (Drosophila ananassae) ACC 92477818 (Drosophila erecta) 8809 (Drosophila melanogaster) 67896654 (Drosophila pseudoobscura) CS016 1929 CTCGTAGATGGTGGCCAAATCGGTGTACATGTA 9713 (Manduca sexta) ACCTGGGAAACCACG 110248186 (Spodoptera frugiperda) 27372076 (Spodoptera littoralis) CS016 1930 GAACAGGCACACGTTCTCCATGGA 92962756 (Drosophila ananassae) CS016 1931 GACTCGAATACTGTGCGGTTCTCGTAGTT 87266757 (Choristoneura fumiferana) 9713 (Manduca sexta) CS016 1932 GACTTCATGAGACGAGACAGGGAAGGCAGCAC 9713 (Manduca sexta) GTT CS016 1933 GAGATACCAGTCTGGATCATTTC 92969748 (Drosophila mojavensis) CS016 1934 GAGATACCAGTCTGGATCATTTCCTC 92935139 (Drosophila virilis) CS016 1935 GATGAAGTTCTTCTCGAACTTGG 2921501 (Culex pipiens) CS016 1936 GATGAAGTTCTTCTCGAACTTGGT 4680479 (Aedes aegypti) 31206154 (Anopheles gambiae str. PEST) 92953069 (Drosophila ananassae) 92477149 (Drosophila erecta) 8809 (Drosophila melanogaster) 67896654 (Drosophila pseudoobscura) 55694467 (Drosophila yakuba) 112349870 (Helicoverpa armigera) 237458 (Heliothis virescens) CS016 1937 GATGAAGTTCTTCTCGAACTTGGTGAGGAACTC 76555122 (Spodoptera frugiperda) GAGGTAGAGCA CS016 1938 GATGGGGATCTGCGTGATGGA 101403557 (Plodia interpunctella) 53883819 (Plutella xylostella) CS016 1939 GCACACGTTCTCCATGGAGCCGTTCTC 104530890 (Belgica antarctica) CS016 1940 GCCAAATCGGTGTACATGTAACCTGGGAAACCA 91829127 (Bombyx mori) CGTCGTCCGGG CS016 1941 GCCAAGAACTCAGCAGCAGTCA 237458 (Heliothis virescens) CS016 1942 GCCGTCTCCATGTTCACACCCA 83937868 (Lutzomyia longipalpis) CS016 1943 GCCGTCTCCATGTTCACACCCAT 92965644 (Drosophila grimshawi) CS016 1944 GCCTGCACGTCCTTACCGATGGCGTAGCA 112349870 (Helicoverpa armigera) 237458 (Heliothis virescens) 110248186 (Spodoptera frugiperda) CS016 1945 GCCTTCATGGCCTGCACGTCCTT 39675733 (Anopheles gambiae) 31206154 (Anopheles gambiae str. PEST) CS016 1946 GCCTTCATGGCCTGCACGTCCTTACCGATGGC 2921501 (Culex pipiens) GTAGCA CS016 1947 GCGGCGAACACGATGGCAAAGTT 2921501 (Culex pipiens) 92965644 (Drosophila grimshawi) CS016 1948 GCGGCGAACACGATGGCAAAGTTGTCCTCGTG 77905105 (Aedes aegypti) CS016 1949 GCGTACAGCTGGTTGGAAACATC 67896654 (Drosophila pseudoobscura) CS016 1950 GGAATAGGATGGGTGATGTCGTCGTTGGGCAT 110248186 (Spodoptera frugiperda) AGT CS016 1951 GGAATAGGATGGGTGATGTCGTCGTTGGGCAT 27372076 (Spodoptera littoralis) AGTCA CS016 1952 GGATGGGTGATGTCGTCGTTGGGCAT 101403557 (Plodia interpunctella) CS016 1953 GGCAGACCGGCAGCCGAGAAAATGGGGATCTT 67841091 (Drosophila pseudoobscura) CS016 1954 GGCATAGTCAAGATGGGGATCTG 92924977 (Drosophila virilis) CS016 1955 GGCCGTCTCCATGTTCACACCCATGGC 101403557 (Plodia interpunctella) CS016 1956 GGCGGGTAGATCTGTCTGTTGTG 2921501 (Culex pipiens) 92965644 (Drosophila grimshawi) 92924977 (Drosophila virilis) CS016 1957 GGCGGGTAGATCTGTCTGTTGTGGAGCTGACG 237458 (Heliothis virescens) GTCTACGTAGATCTGTCCCTCAGT 110248186 (Spodoptera frugiperda) CS016 1958 GGGAAGATACGGAGCAGCTGCCA 60336551 (Homalodisca coagulata) CS016 1959 GGGTTGATGGGCTGTCCCTGGATGTCCAA 76554661 (Spodoptera frugiperda) 27372076 (Spodoptera littoralis) CS016 1960 GGTTTTCCAGAGCCGTTGAATAC 62238871 (Diabrotica virgifera) CS016 1961 GTGATGAAGTTCTTCTCGAACTTGGT 87266757 (Choristoneura fumiferana) CS016 1962 GTGCGGTTCTCGTAGTTGCCCTG 31206154 (Anopheles gambiae str. PEST) 92477149 (Drosophila erecta) 8809 (Drosophila melanogaster) 67896654 (Drosophila pseudoobscura) 92938364 (Drosophila virilis) 92231646 (Drosophila willistoni) 55694467 (Drosophila yakuba) CS016 1963 GTGGCCAAATCGGTGTACATGTAACC 2921501 (Culex pipiens) 75469507 (Tribolium castaneum) CS016 1964 GTGTACATGTAACCTGGGAAACCACG 101403557 (Plodia interpunctella) CS016 1965 GTGTACATGTAACCTGGGAAACCACGTCG 237458 (Heliothis virescens) CS016 1966 GTGTACATGTAACCTGGGAAACCACGTCGTCC 53883819 (Plutella xylostella) GGGCACCTCCTCACGGGCGGC CS016 1967 TCAGAGTGGTCCTTGCGGGTCAT 237458 (Heliothis virescens) 9713 (Manduca sexta) CS016 1968 TCAGCAAGGATTGGGGGACCTTTGTC 10763875 (Manduca sexta) CS016 1969 TCCTCACCGACGACAGCCTTCATGGCCTG 92969578 (Drosophila grimshawi) CS016 1970 TCCTCAGGGTAGATACGGGACCA 76554661 (Spodoptera frugiperda) CS016 1971 TCCTCAGGGTAGATACGGGACCAGGGGTTGAT 22474040 (Helicoverpa armigera) GGGCTG 237458 (Heliothis virescens) 9713 (Manduca sexta) CS016 1972 TCGAAGTCCTGCTTGAAGAACC 9713 (Manduca sexta) CS016 1973 TCGTAGATGGTGGCCAAATCGGTGTACATGTAA 62239897 (Diabrotica virgifera) CC CS016 1974 TCGTAGATGGTGGCCAAATCGGTGTACATGTAA 4680479 (Aedes aegypti) CCTGGGAAACCACG CS016 1975 TCTACGTAGATCTGTCCCTCAGTGATGTA 101403557 (Plodia interpunctella) CS016 1976 TGCACGTCCTTACCGATGGCGTAGCA 9713 (Manduca sexta) 75710699 (Tribolium castaneum) CS016 1977 TGGGTGATGTCGTCGTTGGGCAT 53883819 (Plutella xylostella) CS016 1978 TGGTAGGCCAAGAACTCAGCAGC 9713 (Manduca sexta) CS016 1979 TTCAAGAACAGGCACACGTTCTCCAT 18883474 (Anopheles gambiae) 31206154 (Anopheles gambiae str. PEST) 92933153 (Drosophila virilis) 27372076 (Spodoptera littoralis) CS016 1980 TTCAAGAACAGGCACACGTTCTCCATGGA 92950254 (Drosophila ananassae) 76554661 (Spodoptera frugiperda) CS016 1981 TTCTCACACTGGTAGGCCAAGAA 18883474 (Anopheles gambiae) CS016 1982 TTCTCCTCGAAGTCCTGCTTGAAGAA 83937868 (Lutzomyia longipalpis) CS016 1983 TTGAGCATCTCCTTGGGGAAGATACG 92477149 (Drosophila erecta) 8809 (Drosophila melanogaster) 67896654 (Drosophila pseudoobscura) 112349870 (Helicoverpa armigera) CS016 1984 TTGAGCATCTCCTVGGGGAAGATACGGAGCA 83928466 (Lutzomyia longipalpis) CS016 1985 TTGAGCATCTCCTTGGGGAAGATACGGAGCAG 50559098 (Homalodisca coagulata) CTGCCA 71049259 (Oncometopia nigricans) CS016 1986 TTGAGCATCTCCTTGGGGAAGATACGGAGCAG 87266757 (Choristoneura fumiferana) CTGCCAGCCGATGTC CS018 1987 TCCGACTACTCTTCCACGGAC 31659029 (Anopheles gambiae) -
TABLE 4-PX Target SEQ ID ID NO Sequence * Example Gi-number and species PX001 2120 AACAACGTGTTCATCATCGGCAAGGGCACGAA 112350001 (Helicoverpa armigera) PX001 2121 AACGTGTTCATCATCGGCAAG 27562760 (Anopheles gambiae) 58378595 (Anopheles gambiae str. PEST) PX001 2122 AACGTGTTCATCATCGGCAAGG 42764924 (Armigeres subalbatus) Px001 2123 AACGTGTTCATCATCGGCAAGGG 71048604 (Oncometopia nigricans) PX001 2124 AACGTGTTCATCATCGGCAAGGGCACGAA 112783858 (Anopheles funestus) PX001 2125 AACTTGGGGCGAGTGGGCACCATCGTGTC 90132259 (Bicyclus anynana) PX001 2126 AACTTGGGGCGAGTGGGCACCATCGTGTCCCGCGAG 112350001 (Helicoverpa armigera) PX001 2127 AAGATCGTGAAGCAGCGCCTCATCAAGGTGGACGGCAAGGT 112350001 (Helicoverpa armigera) PX001 2128 AAGGTCCGCACCGACCCCACCTA 14627585 (Drosophila melanogaster) PX001 2129 AAGTACAAGCTGTGCAAGGTG 5498893 (Antheraea yamamai) 90132259 (Bicyclus anynana) 92969396 (Drosophila grimshawi) 50818668 (Heliconius melpomene) 58371410 (Lonomia obliqua) PX001 2130 ACAACGTGTTCATCATCGGCAAGGGCACGAA 103783745 (Heliconius erato) PX001 2131 ACGGCAAGGTCCGCACCGACCC 77890923 (Aedes aegypti) PX001 2132 ACGGCCGCACGCTGCGCTACCCCGACCCGCTCATCAAGGTC 101413238 (Plodia interpunctella) AACGACTCC PX001 2133 ACGTGTTCATCATCGGCAAGGGCAC 109509107 (Culex pipiens) PX001 2134 AGGAGGCCAAGTACAAGCTGT 27566312 (Anopheles gambiae) 67889891 (Drosophila pseudoobscura) PX001 2135 AGGAGGCCAAGTACAAGCTGTGCAAGGT 92944919 (Drosophila ananassae) 67886177 (Drosophila pseudoobscura) 92045792 (Drosophila willistoni) PX001 2136 AGGAGGCCAAGTACAAGCTGTGCAAGGTG 92929731 (Drosophila virilis) PX001 2137 CAACGTGTTCATCATCGGCAA 109509107 (Culex pipiens) PX001 2138 CAACGTGTTCATCATCGGCAAGGGCA 55816641 (Drosophila yakuba) PX001 2139 CACACCTTCGCCACCAGGUGAACAACGTGTT 3986403 (Antheraea yamamai) PX001 2140 CCCCAAGAAGCATTTGAAGCG 2886669 (Drosophila melanogaster) PX001 2141 CCGAGGAGGCCAAGTACAAGCT 92944919 (Drosophila ananassae) PX001 2142 CCGAGGAGGCCAAGTACAAGCTGTGCAAGGT 15480750 (Drosophila melanogaster) PX001 2143 CCGCACAAGCTGCGCGAGTGCCTGCCGCT 22474232 (Helicoverpa armigera) PX001 2144 CGACGGGCCCCAAGAACGTGCC 112350001 (Helicoverpa armigera) PX001 2145 CGAGGAGGCCAAGTACAAGCT 58378595 (Anopheles gambiae str. PEST) PX001 2146 CGAGGAGGCCAAGTACAAGCTG 18914191 (Anopheles gambiae) PX001 2147 CGAGTGGGCACCATCGTGTCCCGCGAG 3986403 (Antheraea yamamai) PX001 2148 CGCTACCCCGACCCGCTCATCAAGGTCAACGACTCC 112350001 (Helicoverpa armigera) PX001 2149 CGCTTCACCATCCACCGCATCAC 103783745 (Heliconius erato) PX001 2150 CGGCAACGAGGTGCTGAAGATCGT 90132259 (Bicyclus anynana) PX001 2151 CGTAACTTGGGGCGAGTGGGCAC 60311985 (Papilio dardanus) PX001 2152 CTACCCGGCTGGATTCATGGATGT 42764924 (Armigeres subalbatus) PX001 2153 CTCATCAAGGTCAACGACTCC 103783745 (Heliconius erato) PX001 2154 CTCATCAAGGTCAACGACTCCATCCAGCTCGACAT 3738704 (Manduca sexta) PX001 2155 GACGGCAAGGTCCGCACCGAC 109509107 (Culex pipiens) PX001 2156 GACGGCAAGGTCCGCACCGACCC 77759638 (Aedes aegypti) PX001 2157 GAGGAGGCCAAGTACAAGCTGTGCAAGGT 67841491 (Drosophila pseudoobscura) PX001 2158 GAGGAGGCCAAGTACAAGCTGTGCAAGGTG 56772971 (Drosophila virilis) PX001 2159 GAGGCCAAGTACAAGCTGTGCAA 112350001 (Helicoverpa armigera) PX001 2160 GAGGCCAAGTACAAGCTGTGCAAGGTG 98993531 (Antheraea mylitta) PX001 2161 GCCAAGTACAAGCTGTGCAAGGT 67838306 (Drosophila pseudoobscura) 109978109 (Gryllus pennsylvanicus) PX001 2162 GCCCCAAGAAGCATTTGAAGCG 2151718 (Drosophila melanogaster) PX001 2163 GCGCGTGGCGACGGGCCCCAA 5498893 (Antheraea yamamai) PX001 2164 GCGCGTGGCGACGGGCCCCAAG 3986403 (Antheraea yamamai) PX001 2165 GGAGGCCAAGTACAAGCTGTGCAAGGT 92942537 (Drosophila ananassae) PX001 2166 GGCCCCAAGAAGCATTTGAAGCG 4459798 (Drosophila melanogaster) PX001 2167 GGCGGCGTGTACGCGCCGCGGCCC 98994282 (Antheraea mylitta) PX001 2168 GTCCGCACCGACCCCACCTACCC 92472430 (Drosophila erecta) 55854272 (Drosophila yakuba) PX001 2169 GTGGGCACCATCGTGTCCCGCGAGAG 3953837 (Bombyx mandarina) 29554802 (Bombyx mori) PX001 2170 TCAAGGTGGACGGCAAGGTCCGCACCGACCC 92944919 (Drosophila ananassae) PX001 2171 TGATCTACGATGTGAAGGGACG 83935965 (Lutzomyia longipalpis) PX001 2172 TTCATGGATGTTGTGTCGATTGAAAA 90132259 (Bicyclus anynana) PX001 2173 GCTGGATTCATGGATGTTGTG 10707240 (Amblyomma americanum) PX001 2174 AAGCAGCGCCTCATCAAGGTGGACGGCAAGGTCCGCACCGAC 49545866 (Rhipicephalus appendiculatus) PX009 2175 AACATCTTCAACTGTGACTTC 93001544 (Drosophila mojavensis) PX009 2176 TGATCAACATCGAGTGCAAAGC 110755556 (Apis mellifera) PX009 2177 TTCTTGAAGCTGAATAAGATCT 103750396 (Drosophila melanogaster) PX010 2178 CAGTTCCTGCAGGTCTTCAACAA 71553175 (Oncometopia nigricans) PX010 2179 CCATCAGCGGACGGTGGCGCCCCCGTG 90139187 (Spodoptera frugiperda) PX010 2180 CCCGCAGTTCATGTACCACCTGCGCCGCTCGCAGTTC 67893194 (Drosophila pseudoobscura) PX010 2181 CCGAACAGCTTCCGTCTGTCGGAGAACTTCAG 29558345 (Bombyx mori) PX010 2182 CGCCTGTGCCAGAAGTTCGGCGAGTACG 58395529 (Anopheles gambiae str. PEST) PX010 2183 CTGCGCCGCTCGCAGTTCCTGCAGGT 18872210 (Anopheles gambiae) PX010 2184 CTGTACCCGCAGTTCATGTACCA 29558345 (Bombyx mori) PX010 2185 GACGTGCTGCGCTGGCTCGACCG 29558345 (Bombyx mari) PX010 2186 GACGTGTCGCTGCAAGTGTTCATGGAGCA 18872210 (Anopheles gambiae) PX010 2187 GAGTACGAGAACTTCAAGCAGCTGCTGC 77886140 (Aedes aegypti) 18872210 (Anopheles gambiae) 49376735 (Drosophila melanogaster) 67893324 (Drosophila pseudoobscura) PX010 2188 GGCGGGGCGATGCCGATACCATC 91757875 (Bombyx mori) PX010 2189 GTGGCTGCATACAGTTCATTACGCAGTACCAGCAC 28571527 (Drosophila melanogaster) PX010 2190 TCGCAGTTCCTGCAGGTCTTCAACAA 92932090 (Drosophila virilis) PX010 2191 TGCGCCGCTCGCAGTTCCTGCAGGTCTTCAACAA 67893324 (Drosophila pseudoobscuna) PX010 2192 TGCGCCGCTCGCAGTTCCTGCAGGTCTTCAACAACTCGCCC 92952825 (Drosophila ananassae) GACGAGACCAC PX010 2193 TTCATGTACCACCTGCGCCGCTCGCAGTTCCTGCAGGTCTTC 28571527 (Drosophila melanogaster) AACAACTCGCCCGACGAGACCAC PX010 2194 ATCCTGCTCATGGACACCTTCTTCCA 82842646 (Boophilus microplus) PX015 2195 CACCGCGACGACACGTTCATGGTGCGCGGCGG 58371643 (Lonomia obliqua) PX015 2196 CAGATCAAGGAGATGGTGGAG 92480997 (Drosophila erecta) 58371722 (Lonomia oblique) PX015 2197 CCCGACGAGAAGATCCGCATGAA 67873606 (Drosophila pseudoobscura) PX015 2198 CCCGACGAGAAGATCCGCATGAACCGCGT 15070733 (Drosophila melanogaster) PX015 2199 CCGACGAGAAGATCCGCATGAACCGCGT 92459970 (Drosophila erecta) PX015 2200 CGCAAGGAGACCGTGTGCATTGTGCT 67873606 (Drosophila pseudoobscura) PX015 2201 GACGAGAAGATCCGCATGAACCG 18914444 (Anopheles gambiae) PX015 2202 GACGAGAAGATCCGCATGAACCGCGT 4691131 (Aedes aegypti) PX015 2203 GCGCAGATCAAGGAGATGGTGGAGCT 99007898 (Leptinotarsa decemlineata) PX015 2204 GGCATGCGCGCCGTCGAGTTC 6901917 (Bombyx mori) PX015 2205 GTGCGCGGCGGCATGCGCGCC 67891252 (Drosophila pseudoobscura) PX015 2206 TCAAGGAGATGGTGGAGCTGC 27819993 (Drosophila melanogaster) PX015 2207 TGAAGCCGTACTTCATGGAGGC 29559940 (Bombyx mori) PX015 2208 TGCCGCAAGCAGCTGGCGCAGATCAAGGAGATGGT 18914444 (Anopheles gambiae) PX015 2209 TGGAGGCGTACCGGCCCATCCAC 18914444 (Anopheles gambiae) PX016 2210 AAGGACCACTCCGACGTGTCCAA 101406307 (Plodia interpunctella) PX016 2211 AAGGACGTGCAGGCGATGAAGGC 112349870 (Helicoverpa armigera) 110248186 (Spodoptera frugiperda) PX016 2212 ACCAAGTTCGAGAAGAACTTCATC 4680479 (Aedes aegypti) 31206154 (Anopheles gambiae str. PEST) 92953069 (Drosophila ananassae) 92477149 (Drosophila erecta) 24646340 (Drosophila melanogaster) 67900295 (Drosophila pseudoobscura) 55694467 (Drosophila yakuba) 112349870 (Helicoverpa armigera) 237458 (Heliothis virescens) PX016 2213 ACCAAGTTCGAGAAGAACTTCATCAC 87266757 (Choristoneura fumiferana) PX016 2214 ACCGCCAGGTTCTUCAAGCAGGACTTCGA 9713 (Manduca sexta) PX016 2215 ACCGGCGATATTCTGCGCACGCCCGTCTC 92940287 (Drosophila virilis) PX016 2216 AGCAGGACTTCGAGGAGAACGG 67880606 (Drosophila pseudoobscura) PX016 2217 ATCACGCAGATCCCCATCCTGACCATGCC 31206154 (Anopheles gambiae str. PEST) PX016 2218 ATCTTGACCGACATGTCTTCATACGC 104530890 (Belgica antarctica) 92231646 (Drosophila willistoni) PX016 2219 ATGACCAGGAAGGACCACTCCGACGT 75713096 (Tribolium castaneum) PX016 2220 ATGCCCAACGACGACATCACCCA 101406307 (Plodia interpunctella) 76555122 (Spodoptera frugiperda) 27372076 (Spodoptera littoralis) PX016 2221 CAGAAGATCCCCATCTTCTCCGCCGCCGGTCTGCCCCACAA 92460896 (Drosophila erecta) CGA 24646340 (Drosophila melanogaster) PX016 2222 CAGGACTTCGAGGAGAACGGTTCCATGGAGAACGT 2921501 (Culex pipiens) 76554661 (Spodoptera frugiperda) PX016 2223 CCAAGTTCGAGAAGAACTTCATC 2921501 (Culex pipiens) PX016 2224 CCCATCAACCCGTGGTCCCGTATCTACCCGGAGGA 2921501 (Culex pipiens) PX016 2225 CCCGACTTGACCGGGTACATCACTGAGGGACAGATCTACGT 101406307 (Plodia interpunctella) PX016 2226 CCCGGACGACGTGGTTUCCCAGGTTACATGTACAC 91829127 (Bombyx mori) PX016 2227 CCTGGACATCCAGGGGCAGCCCATCAACCC 91090030 (Tribolium castaneum) PX016 2228 CGACGTGGTTTCCCAGGTTACATGTACACGGATTTGGC 237458 (Heliothis virescens) PX016 2229 CGTCTCATGAAGTCCGCCATCGG 91829127 (Bombyx mori) PX016 2230 CGTCTCATGAAGTCCGCCATCGGAGAGGGCATGACC 237458 (Heliothis virescens) PX016 2231 CGTGGTCAGAAGATCCCCATCTTCTC 27372076 (Spodoptera littoralis) PX016 2232 CGTGGTCAGAAGATCCCCATCTTCTCCGC 76554661 (Spodoptera frugiperda) PX016 2233 CGTGGTTTCCCAGGTTACATGTACAC 55797015 (Acyrthosiphon pisum) 4680479 (Aedes aegypti) 73615307 (Aphis gossypii) 92231646 (Drosophila willistoni) 9713 (Manduca sexta) 76555122 (Spodoptera frugiperda) 27372076 (Spodoptera littoralis) PX016 2234 CGTGGTTTCCCAGGTTACATGTACACGGATTTGGCCACAATC 101406307 (Plodia interpunctella) TACGAGCGCGCCGGGCG PX016 2235 CTACGAGAACCGCACAGTGTTCGAGTC 112350031 (Helicoverpa armigera) 237458 (Heliothis virescens) 76555122 (Spodoptera frugiperda) PX016 2236 CTGCGTATCTTCCCCAAGGAGAT 63005818 (Bombyx mori) 92477149 (Drosophila erecta) 24646340 (Drosophila melanogaster) 56773982 (Drosophila pseudoobscura) 92935600 (Drosophila vinilis) 92220609 (Drosophila willistoni) 112350031 (Helicoverpa armigera) 237458 (Heliothis virescens) 9713 (Manduca sexta) PX016 2237 CTGTACGCGTGCTACGCCATCGG 9713 (Manduca sexta) PX016 2238 CTGTTCTTGAACTTGGCCAATGA 16898595 (Ctenocephalides felis) PX016 2239 CTGTTCTTGAACTTGGCCAATGACCC 27372076 (Spodoptera littoralis) PX016 2240 GACAACTTCGCCATCGTGTTCGC 92950254 (Drosophila ananassae) PX016 2241 GACAACTTCGCCATCGTGTTCGCCGC 92477818 (Drosophila erecta) 24646340 (Drosophila melanogaster) 237458 (Heliothis virescens) 9713 (Manduca sexta) 76554661 (Spodoptera frugiperda) PX016 2242 GACAACTTCGCCATCGTGTTCGCCGCCATGGG 31206154 (Anopheles gambiae str. PEST) PX016 2243 GACCGTCAGCTGCACAACAGGCA 50564193 (Homalodisca coagulata) PX016 2244 GACCTGCTCTACCTCGAGTTC 112349870 (Helicoverpa armigera) PX016 2245 GACGTGATGAACTCCATCGCCCG 237458 (Heliothis virescens) PX016 2246 GACGTGATGAACTCCATCGCCCGTGG 22474040 (Helicoverpa armigera) PX016 2247 GAGAACGGTTCCATGGAGAACGT 91829127 (Bombyx mori) PX016 2248 GAGGAGATGATCCAGACTGGTATCTCCGCTAT 237458 (Heliothis virescens) 76554661 (Spodoptera frugiperda) PX016 2249 GAGGAGATGATCCAGACTGGTATCTCCGCTATCGACGTGATG 27372076 (Spodoptera littoralis) AACTCCAT PX016 2250 GAGGAGGCGCTCACGCCCGACGAC 9713 (Manduca sexta) PX016 2251 GAGTTCTTGGCCTACCAGTGCGAGAA 4680479 (Aedes aegypti) PX016 2252 GCCAGGTTCTTCAAGCAGGACTTCGAGGAGAACGG 101403557 (Plodia interpunctella) PX016 2253 GCCCGTGGTCAGAAGATCCCCAT 67877903 (Drosophila pseudoobscura) PX016 2254 GCCCGTGGTCAGAAGATCCCCATCTTCTC 6901845 (Bombyx mori) PX016 2255 GCCCGTGGTCAGAAGATCCCCATCTTCTCCGCCGC 92950254 (Drosophila ananassae) PX016 2256 GCCGAGTTCTTGGCCTACCAGTGCGAGAA 24646340 (Drosophila melanogaster) PX016 2257 GCCGAGTTCTTGGCCTACCAGTGCGAGAAACACGTGTTGGT 110240379 (Spodoptera frugiperda) PX016 2258 GCCGCCCGTGAGGAGGTGCCCGGACG 31206154 (Anopheles gambiae str. PEST) 9713 (Manduca sexta) 110240379 (Spodoptera frugiperda) PX016 2259 GCCTACCAGTGCGAGAAACACGTGTTGGTAATCTTGACCGAC 101406307 (Plodia interpunctella) ATGTC PX016 2260 GGCAGATCTACCCGCCGGTGAA 31206154 (Anopheles gambiae str. PEST) PX016 2261 GGCGAGGAGGCGCTCACGCCCGACGA 31206154 (Anopheles gambiae str. PEST) PX016 2262 GGTCAGAAGATCCCCATCTTCTC 60295607 (Homalodisca coagulata) PX016 2263 GGTTACATGTACACGGATTTGGCCAC 92924977 (Drosophila virilis) PX016 2264 GTGGTGGGCGAGGAGGCGCTCACGCC 112349870 (Helicoverpa armigera) PX016 2265 GTTCACCGGCGATATTCTGCG 92997483 (Drosophila grimshawi) PX016 2266 GTTCACCGGCGATATTCTGCGCAC 92950254 (Drosophila ananassae) 92048971 (Drosophila willistoni) PX016 2267 TACCAGTGCGAGAAACACGTGTTGGT 237458 (Heliothis virescens) PX016 2268 TACGCCATCGGCAAGGACGTGCAGGCGATGAAGGC 87266757 (Choristoneura fumiferana) PX016 2269 TCCATCACGCAGATCCCCATCCT 101406307 (Plodia interpunctella) PX016 2270 TCCGGCAAGCCCATCGACAAGGG 92460896 (Drosophila erecta) 24646340 (Drosophila melanogaster) 22474040 (Helicoverpa armigera) 237458 (Heliothis virescens) PX016 2271 TCTACGAGCGCGCCGGGCGAGTC 33528180 (Trichoplusia ni) PX016 2272 TCTCGTCTCATGAAGTCCGCCATCGG 9713 (Manduca sexta) PX016 2273 TGACTGCTGCCGAGTTCTTGGCCTACCAGTGCGAGAAACAC 27372076 (Spodoptera littoralis) GTGTTGGT PX016 2274 TGCACAACAGGCAGATCTACCC 62239897 (Diabrotica virgifera) PX016 2275 TGCGTATCTTCCCCAAGGAGAT 16900620 (Ctenocephalides felis) 92967975 (Drosophila mojavensis) PX016 2276 TGCTACGCCATCGGCAAGGACGTGCAGGC 31206154 (Anopheles gambiae str. PEST) 92953069 (Drosophila ananassae) 92477149 (Drosophila erecta) 24646340 (Drosophila melanogaster) 67898824 (Drosophila pseudoobscura) 55694467 (Drosophila yakuba) PX016 2277 TGCTCTACCTCGAGTTCCTCACCAAGTTCGAGAAGAACTTCA 76555122 (Spodoptera frugiperda) TC PX016 2278 TGTCTGTTCTTGAACTTGGCCAA 4680479 (Aedes aegypti) 92477818 (Drosophila erecta) 24646340 (Drosophila melanogaster) PX016 2279 TGTCTGTTCTTGAACTTGGCCAATGA 55905051 (Locusta migratoria) PX016 2280 TGTTCTTGAACTTGGCCAATGA 91090030 (Tribolium castaneum) PX016 2281 TTCAACGGCTCCGGCAAGCCCAT 76554661 (Spodoptera frugiperda) PX016 2282 TTCAACGGCTCCGGCAAGCCCATCGACAAGGG 4680479 (Aedes aegypti) 31206154 (Anopheles gambiae str. PEST) 67877903 (Drosophila pseudoobscura) PX016 2283 TTCGAGGAGAACGGTTCCATGGAGAA 92972277 (Drosophila grimshawi) PX016 2284 TTCGAGGAGAACGGTTCCATGGAGAACGT 92950254 (Drosophila ananassae) PX016 2285 TTCTTCAAGCAGGACTTCGAGGAGAA 83937868 (Lutzomyia longipalpis) PX016 2286 TTCTTCAAGCAGGACTTCGAGGAGAACGG 92477818 (Drosophila erecta) PX016 2287 TTCTTCAAGCAGGACTTCGAGGAGAACGGTTC 31206154 (Anopheles gambiae str. PEST) PX016 2288 TTCTTCAAGCAGGACTTCGAGGAGAACGGTTCCATGGAGAAC 24646340 (Drosophila melanogaster) GT PX016 2289 TTCTTGAACTTGGCCAATGACCC 9713 (Manduca sexta) PX016 2290 TTCTTGGCCTACCAGTGCGAGAA 31206154 (Anopheles gambiae str. PEST) 67883622 (Drosophila pseudoobscura) 92231646 (Drosophila willistoni) -
TABLE 4-AD Target SEQ ID ID NO Sequence * Example Gi-number and species AD001 2384 AAAGCATGGATGTTGGACAAA 73619372 (Aphis gossypii); 77325485 (Chironomus tentans); 22474232 (Helicoverpa armigera); 37951951 (Ips pini); 60305420 (Mycetophagus quadripustulatus); 84647995 (Myzus persicae) AD001 2385 AAAGCATGGATGTTGGACAAACT 94432102 (Bombyx mori); 103790417 (Heliconius erato); 55904580 (Locusta migratoria); 101419954 (Plodia interpunctella) AD001 2386 AAAGGTATTCCATTCTTGGTGACCCATGATGGCC 109978109 (Gryllus pennsylvanicus) GTACTATCCGTTATCCTGACCCAGTCATTAAAGT AD001 2387 AACTGTGAAGTAACGAAGATTGTTATGCAGCGACT 109978109 (Gryllus pennsylvanicus) TATCAAAGTTGA AD001 2388 AAGAAGCATTTGAAGCGTTTAAA 3658572 (Manduca sexta) AD001 2389 AAGGGTAAGGGTGTGAAATTGAGTAT 109978109 (Gryllus pennsylvanicus) AD001 2390 AATGTATTCATCATTGGAAAAGC 55904577 (Locusta migratoria) AD001 2391 AGAAGCATTTGAAGCGTTTAAA 98994282 (Antheraea mylitta) 73619372 (Aphis gossypii) AD001 2392 AGAAGCATTTGAAGCGTTTAAATGC 27620566 (Anopheles gambiae) AD001 2393 AGTACTGGCCCCCACAAATTGCG 109978109 (Gryllus pennsylvanicus) AD001 2394 AGTGCAGAAGAAGCCAAGTACAAGCT 109978109 (Gryllus pennsylvanicus) AD001 2395 ATCGCCGAGGAGCGGGACAAGC 3953837 (Bombyx mandarina) 94432102 (Bombyx mori) AD001 2396 CAAGGACATACTTTTGCCACAAGATTGAATAATGT 109978109 (Gryllus pennsylvanicus) ATTCATCATTGGAAA AD001 2397 CAGAAGAAGCCAAGTACAAGCT 42764924 (Armigeres subalbatus) AD001 2398 CATGATGGCCGTACTATCCGTTA 73613065 (Aphis gossypii) AD001 2399 CATGATGGCCGTACTATCCGTTATCCTGACCC 31365398 (Toxoptera citricida) AD001 2400 CATTTGAAGCGTTTAAATGCTCC 27557322 (Anopheles gambiae) AD001 2401 CCTAAAGCATGGATGTTGGAC 77324536 (Chironomus tentans) AD001 2402 CCTAAAGCATGGATGTTGGACAA 58371410 (Lonomia obliqua) AD001 2403 CCTAAAGCATGGATGTTGGACAAA 60311985 (Papilio dardanus) 30031258 (Toxoptera citricida) AD001 2404 CCTAAAGCATGGATGTTGGACAAACT 98994282 (Antheraea mylitta) AD001 2405 CGTACTATCCGTTATCCTGACCC 37804548 (Rhopalosiphum padi) AD001 2406 GAATGTTTACCTTTGGTGATTTTTCTTCGCAATCG 109978109 (Gryllus pennsylvanicus) GCT AD001 2407 GCAGAAGAAGCCAAGTACAAGCT 37953169 (Ips pini) AD001 2408 GCATGGATGTTGGACAAACTCGG 83935968 (Lutzomyia longipalpis) AD001 2409 GCTGGTTTCATGGATGTTGTCAC 109978109 (Gryllus pennsylvanicus) AD001 2410 GGCCCCAAGAAGCATTTGAAGCGTTTAA 14693528 (Drosophila melanogaster) AD001 2411 GGTTTCATGGATGTTGTCACCAT 25958683 (Curculio glandium) AD001 2412 TATGATGTGAAAGGCCGTTTCACAATTCACAGAAT 109978109 (Gryllus pennsylvanicus) AD001 2413 TCATTGCCAAAGGGTAAGGGT 77324972 (Chironomus tentans) AD001 2414 TGGATATTGCCACTTGTAAAATCATGGACCACATC 109978109 (Gryllus pennsylvanicus) AGATTTGAATCTGG AD001 2415 TTAAATGCTCCTAAAGCATGGATGTTGGACAAACT 109978109 (Gryllus pennsylvanicus) AD001 2416 TTTGAATCTGGCAACCTGTGTATGAT 60311985 (Papilio dardanus) AD001 2417 TTTGATATTGTTCATATCAAGGATAC 109978109 (Gryllus pennsylvanicus) AD002 2418 AAGAAAATCGAACAAGAAATC 55902553 (Locusta migratoria) AD002 2419 CAGCACATGGATGTGGACAAGGT 67899569 (Drosophila pseudoobscura) AD002 2420 GAGTTTCTTTAGTAAAGTATTCGGTGG 110762684 (Apis mellifera) AD009 2421 CACTACAACTACCACAAGAGC 84226228 (Aedes aegypti) 18941376 (Anopheles gambiae) AD009 2422 CAGAACATCCACAACTGTGACT 29534871 (Bombyx mori) AD009 2423 GGTGTGGGTGTCGTGCGAGGG 83926368 (Lutzomyia longipalpis) AD009 2424 TGGATCCCTGAATACTACAATGA 83926506 (Lutzomyia longipalpis) AD015 2425 GAGCAGTAGAATTCAAAGTAGT 99012451 (Leptinotarsa decemlineata) AD015 2426 GCAATTATATTTATTGATGAA 83936542 (Lutzomyia longipalpis) AD015 2427 TCACCATATTGTATTGTTGCT 31366806 (Toxoptera citricida) AD015 2428 TTGTCCTGATGTTAAGTATGG 84114691 (Blomia tropicalis) AD016 2429 ACGATGCCCAACGACGACATCACCCATCC 101406307 (Plodia interpunctella) AD016 2430 ATGCCCAACGACGACATCACCCA 53883819 (Plutella xylostella) AD016 2431 ATGCCCAACGACGACATCACCCATCCTATT 110240379 (Spodoptera frugiperda) 27372076 (Spodoptera littoralis) AD016 2432 CAGAAGATCCCCATCTTCTCGG 91827264 (Bombyx mori) 22474331 (Helicoverpa armigera) 60295607 (Homalodisca coagulata) AD016 2433 CGGCTCCATCACTCAGATCCCCAT 67896654 (Drosophila pseudoobscura) AD016 2434 GCCAACGACCCCACCATCGAG 101406307 (Plodia interpunctella) AD016 2435 GCCCGTGTCCGAGGACATGCTGGG 83937868 (Lutzomyia longipalpis) 75473525 (Tribolium castaneum) AD016 2436 GGCAGAAGATCCCCATCTTCTC 2286803 (Drosophila melanogaster) AD016 2437 GTTCACCGGCGATATTCTGCG 92997483 (Drosophila grimshawi) AD016 2438 GTTCACCGGCGATATTCTGCGC 92953552 (Drosophila ananassae) 92042621 (Drosophila willistoni) -
TABLE 5-LD Target ID SEQ ID No Sequences* Example Gi-number and species LD001 124 AAGAAGCATTTGAAGCGTTTG 8005678 (Meloidogyne incognita), 9829015 (Meloidogyne javanica) LD003 125 GTTCTTCCTCTTGACGCGTCC 7710484 (Zeldia punctata) LD003 126 GCAGCTTTACGGATTTTTGCCAA 32183696 (Meloidogyne chitwoodi) LD003 127 TTTCAACTCCTGATCAAGACGT 1662318 (Brugia malayi), 31229562 (Wuchereria bancrofti) LD006 128 GCTATGGGTAAGCAAGCTATGGG 520506 (Caenorhabditis elegans) LD007 129 AAAGAATAAAAAATTATTTGA 17539725 (Caenorhabditis elegans) LD007 130 AAGCAAGTGATGATGTTCAGTGC 7143515 (Globodera pallida) LD014 131 ATGATGGCTTTCATTGAACAAGA 10122191 (Haemonchus contortus) LD015 132 AACGCCCCAGTCTCATTAGCCAC 20064339 (Meloidogyne hapla) LD016 133 TTTTGGCGTCGATTCCTGATG 71999357 (Caenorhabditis elegans) LD016 134 GTGTACATGTAACCTGGGAAACC 13418283 (Necator americanus) LD016 135 GTGTACATGTAACCTGGGAAACCACGACG 10819046 (Haemonchus contortus) -
TABLE 5-PC Target ID SEQ ID NO Sequence * Example Gi-number and species PC001 435 ATGGATGTTGGACAAATTGGG 7143612 (Globodera rostochiensis) PC003 436 GCTAAAATCCGTAAAGCTGCTCGTGAACT 9831177 (Strongyloides stercoralis) PC003 437 GAGTAAAGTACACTTTGGCTAAA 28914459 (Haemonchus contortus) PC003 438 AAAATCCGTAAAGCTGCTCGTGAACT 32185135 (Meloidogyne chitwoodi) PC003 439 CTGGACTCGCAGAAGCACATCGACTT 51334250 (Radopholus similis) PC003 440 CGTCTGGATCAGGAATTGAAA 61115845 (Litomosoides sigmodontis) PC005 441 TGGTTGGATCCAAATGAAATCAA 5430825 (Onchocerca volvulus) PC005 442 GTGTGGTTGGATCCAAATGAAATCAA 6845701 (Brugia malayi); 45215079 (Wuchereria bancrofti) PC014 443 CACATGATGGCTTTCATTGAACAAGAAGC 10122191 (Haemonchus contortus) PC014 444 TACGAGAAAAAGGAGAAGCAAGT 21265518 (Ostertagia ostertagi) PC016 445 GTCTGGATCATTTCCTCGGGATAAAT 18081287 (Globodera rostochiensis) PC016 446 CCAGTCTGGATCATTTCCTCGGGATA 108957716 (Bursaphelenchus mucronatus); 108962248 (Bursaphelenchus xylophilus) -
TABLE 5-EV Example Target SEQ ID Gi-number ID NO Sequence * and species EV005 563 TTAAAGATGGTCTTATTATTAA 21819186 (Trichinella spiralis) EV016 564 GCTATGGGTGTCAATATGGAAAC 54554020 (Xiphinema index) -
TABLE 5-AG Target ID SEQ ID NO Sequence * Example Gi-number and species AG001 739 GCTGGATTCATGGATGTGATCA 15666884 (Ancylostoma ceylanicum) AG001 740 ATGGATGTTGGACAAATTGGG 18081843 (Globodera rostochiensis) AG001 741 TTCATGGATGTGATCACCATTGA 27002091 (Ascaris suum) AG005 742 GTCTGGTTGGATCCAAATGAAATCAATGA 2099126 (Onchocerca volvulus) AG005 743 GGATCCAAATGAAATCAATGA 2099309 (Onchocerca volvulus) AG005 744 TGATCAAGGATGGTTTGATCAT 2130916 (Brugia malayi) AG005 745 TGGTTGGATCCAAATGAAATCAATGA 6845701 (Brugia malayi) AG005 746 CCAAGGGTAACGTGTTCAAGAACAAG 29964728 (Heterodera glycines) AG005 747 TGGTTGGATCCAAATGAAATCAATGA 45215079 (Wuchereria bancrofti) AG005 748 TGGATCCAAATGAAATCAATGA 61116961 (Litomosoides sigmodontis) AG014 749 GAAGAATTTAACATTGAAAAGGG 10122191 (Haemonchus contortus) AG014 750 GAATTTAACATTGAAAAGGGCCG 28252967 (Trichuris vulpis) AG016 751 GGTTACATGTACACCGATTTGGC 54552787 (Xiphinema index) -
TABLE 5-TC SEQ Example Target ID Gi-number ID NO Sequence * and species TC014 853 ATCATGGAATATTACGAGAAGAA 6562543 (Heterodera schachtii); 15769883 (Heterodera glycines) TC015 854 AACGGTCCCGAAATTATGAGTAAA 108966476 TT (Bursaphelenchus xylophilus) -
TABLE 5-MP Target ID SEQ ID NO Sequence* Example Gi-number and species MP001 1011 GATCTTTTGATATTGTTCACATTAA 13099294 (Strongyloides ratti) MP001 1012 ACATCCAGGATCTTTTGATATTGTTCAC 15275671 (Strongyloides ratti) MP001 1013 TCTTTTGATATTGTTCACATTAA 32183548 (Meloidogyne chitwoodi) MP016 1014 TATTGCTCGTGGACAAAAAAT 9832367 (Strongyloides stercoralis) MP016 1015 TCTGCTGCTCGTGAAGAAGTACCTGG 13418283 (Necator americanus) MP016 1016 GCTGAAGATTATTTGGATATT 20064440 (Meloidogyne hapla) MP016 1017 GGTTTACCACATAATGAGATTGCTGC 20064440 (Meloidogyne hapla) MP016 1018 AAGAAATGATTCAAACTGGTATTTCAGCTATTGAT 31545172 (Strongyloides ratti) MP016 1019 TATTGCTCGTGGACAAAAAATTCCAAT 31545172 (Strongyloides ratti) MP016 1020 GTTTCTGCTGCTCGTGAAGAAGT 31545172 (Strongyloides ratti) MP016 1021 CGTGGTTTCCCTGGTTACATGTACAC 31545172 (Strongyloides ratti) MP016 1022 CCTGGTTACATGTACACCGATTT 54552787 (Xiphinema index) MP027 1023 TTTAAAAATTTTAAAGAAAAA 27540724 (Meloidogyne hapla) MP027 1024 CTATTATGTTGGTGGTGAAGTTGT 34026304 (Meloidogyne arenaria) MP027 1025 AAAGTTTTTAAAAATTTTAAA 34028558 (Meloidogyne javanica) -
TABLE 5-NL Target ID SEQ ID No Sequence* Example Gi-number and species NL001 1438 AGTACAAGCTGTGCAAAGTGAAGA 18087933 (Globodera rostochiensis), 54547517 (Globodera pallida) NL001 1439 ATGGATGTTGGACAAATTGGGTGG 7143612 (Globodera rostochiensis) NL001 1440 TGGATGTTGGACAAATTGGGTGG 7235910 (Meloidogyne incognita) NL001 1441 AGTACAAGCTGTGCAAAGTGAAGA 111164813 (Globodera rostochiensis) NL003 1442 AGTCCATCCATCACGCCCGTGT 6081031 (Pristionchus pacificus) NL003 1443 CTCCGTAACAAGCGTGAGGTGTGG 5815927 (Pristionchus pacificus) NL003 1444 GACTCGCAGAAGCACATTGACTTCTC 5815618 (Pristionchus pacificus) NL003 1445 GCAGAAGCACATTGACTTCTC 6081031 (Pristionchus pacificus) NL003 1446 GCCAAGTCCATCCATCACGCCC 6081133 (Pristionchus pacificus) NL003 1447 GCCAAGTCCATCCATCACGCCCGTGT 1783663 (Pristionchus pacificus) NL003 1448 TCGCAGAAGCACATTGACTTCTC 10804008 (Ascaris suum) NL003 1449 TCGCAGAAGCACATTGACTTCTCGCTGAA 18688500 (Ascaris suum) NL003 1450 GCCAAGTCCATCCATCACGCCCGTGT 91102596 (Pristionchus pacificus) NL003 1451 GACTCGCAGAAGCACATTGACTTCTC 91102596 (Pristionchus pacificus) NL003 1452 CTCCGTAACAAGCGTGAGGTGTGG 91102596 (Pristionchus pacificus) NL004 1453 AAGAACAAGGATATTCGTAAATT 3758529 (Onchocerca volvulus), 6200728 (Litomosoides sigmodontis) NL004 1454 AAGAACAAGGATATTCGTAAATTCTTGGA 21056283 (Ascaris suum), 2978237 (Toxocara canis) NL004 1455 CCGTGTACGCCCATTTCCCCATCAAC 1783477 (Pristionchus pacificus) NL004 1456 TACGCCCATTTCCCCATCAAC 2181209 (Haemonchus contortus) NL007 1457 CAACATGAATGCATTCCTCAAGC 39747064 (Meloidogyne paranaensis) NL007 1458 GAAGTACAACATGAATGCATTCC 6721002 (Onchocerca volvulus) NL007 1459 GCTGTATTTGTGTTGGCGACA 27541378 (Meloidogyne hapla) NL008 1460 AGAAAAGGTTGTGGGTTGGTA 108958003 (Bursaphelenchus mucronatus) NL011 1461 GGACTTCGTGATGGATATTACATTCAGGGACAATG 33138488 (Meloidogyne incognita) NL011 1462 CAACTACAACTTCGAGAAGCC 108984057 (Bursaphelenchus xylophilus) NL014 1463 GAAGAATTCAACATTGAAAAGGG 11927908 (Haemonchus contortus) NL014 1464 GAGCAAGAAGCCAATGAGAAAGC 108985855 (Bursaphelenchus mucronatus) NL014 1465 TTTCATTGAGCAAGAAGCCAATGAGAAAGCCGAAGA 108979738 (Bursaphelenchus xylophilus) NL015 1466 ATGAGCAAATTGGCCGGCGAGTCGGAG 18090737 (Globodera rostochiensis) NL015 1467 CACACCAAGAACATGAAGTTGGCTGA 68276872 (Caenorhabditis remanei) NL015 1468 CAGGAAATCTGTTCGAAGTGT 45564676 (Meloidogyne incognita) NL015 1469 CTGGCGCAGATCAAAGAGATGGT 18090737 (Globodera rostochiensis) NL015 1470 TGGCGCAGATCAAAGAGATGGT 27428872 (Heterodera glycines) NL016 1471 TATCCCGAGGAAATGATCCAGAC 18081287 (Globodera rostochiensis) NL016 1472 CGTATCTATCCCGAGGAAATGATCCAGACTGGAATTTC 108957716 (Bursaphelenchus mucronatus) 108962248 (Bursaphelenchus xylophilus) NL023 1473 TGGATGGGAGTCATGCATGGA 13959786 (Nippostrongylus brasiliensis) -
TABLE 5-CS Target ID SEQ ID NO Sequence* Example Gi-number and species CS001 1988 ATACAAGCTGTGCAAGGTGCG 10803803 (Trichuris muris) CS003 1989 AAGCACATTGACTTCTCGCTGAA 18850138 (Ascaris suum) CS003 1990 CGCAACAAGCGTGAGGTGTGG 40305701 (Heterodera glycines) CS003 1991 CGTCTCCAGACTCAGGTGTTCAAG 91102965 (Nippostrongylus brasiliensis) CS011 1992 TTTAATGTATGGGATACTGCTGG 9832495 (Strongyloides stercoralis) CS011 1993 CACTTGACTGGAGAGTTCGAGAAAA 18082874 (Globodera rostochiensis) CS011 1994 CTCGTGTCACCTACAAAAATGTACC 71182695 (Caenorhabditis remanei) CS011 1995 CACTTGACTGGAGAGTTCGAGAA 108987391 (Bursaphelenchus xylophilus) CS013 1996 TAGGTGAATTTGTTGATGATTA 40305096 (Heterodera glycines) CS014 1997 AAGAAAGAGAAACAAGTGGAACT 51871231 (Xiphinema index) CS016 1998 GTGTACATGTAACCTGGGAAACCACG 10819046 (Haemonchus contortus) CS016 1999 GTGTACATGTAACCTGGGAAACC 13418283 (Necator americanus) CS016 2000 GCCAAATCGGTGTACATGTAACC 54552787 (Xiphinema index) CS016 2001 AAGTTCTTCTCGAACTTGGTGAGGAACTC 111163626 (Globodera rostochiensis) -
TABLE 5-PX Target ID SEQ ID NO Sequence* Example Gi-number and species PX001 2291 CTCGACATCGCCACCTGCAAG 11069004 (Haemonchus contortus); 27770634 (Teladorsagia circumcincta) PX001 2292 GACGGCAAGGTCCGCACCGAC 32320500 (Heterodera glycines) PX001 2293 CCCGGCTGGATTCATGGATGT 51334233 (Radopholus similis) PX001 2294 ATCAAGGTGGACGGCAAGGTCCGCAC 108959807 (Bursaphelenchus xylophilus) PX001 2295 ACAACGTGTTCATCATCGGCAA 111166840 (Globodera rostochiensis) PX016 2296 CGTGGTTTCCCAGGTTACATGTACACGGATTTGGC 10819046 (Haemonchus contortus) PX016 2297 GGTTTCCCAGGTTACATGTACAC 13418283 (Necator americanus) PX016 2298 GAGTTCCTCACCAAGTTCGAGAAGAACTT 111163626 (Globodera rostochiensis) -
TABLE 5-AD Target ID SEQ ID NO Sequence* Example Gi-number and species AD015 2439 ATAAATGGTCCTGAAATTATGA 9832193 (Strongyloides stercoralis) AD016 2440 GTCAACATGGAGACGGCGCGCTT 30220804 (Heterodera glycines) -
TABLE 6-LD SEQ Target ID ID No Sequence* Example Gi-number and species LD001 136 TAGCGGATGGTGCGGCCGTCGTG 54625255 (Phlebiopsis gigantea) LD003 137 TTCCAAGAAATCTTCAATCTTCAAA 50294437 (Candida glabrata CBS 138) LD007 138 GACTGCGGTTTTGAACACCCTTCAGAAGTTCA 110463173 (Rhizopus oryzae) LD007 139 TGTCAAGCCAAATCTGGTATGGG 110463173 (Rhizopus oryzae) LD011 140 GGCTTCTCAAAGTTGTAGTTA 48898288 (Aspergillus flavus) LD011 141 CCATCACGGAGACCACCAAACTT 60673229 (Alternaria brassicicola) LD011 142 AAAGGCTTCTCAAAGTTGTAGTTA 58157923 (Phytophthora infestans) LD011 143 TGTGCTATTATCATGTTTGATGT 110458937 (Rhizopus oryzae) LD011 144 ACTGCCGGTCAGGAGAAGTTTGG 90638500 (Thermomyces lanuginosus) LD011 145 AATACAACTTTGAGAAGCCTTTCCT 90549582 (Lentinula edodes), 90381505 (Amorphotheca resinae) LD011 146 CAGGAGAAGTTTGGTGGTCTCCG 90544763 (Gloeophyllum trabeum) LD011 147 ACCACCAAACTTCTCCTGACC 90368069 (Aureobasidium pullulans) LD011 148 GGTCAGGAGAAGTTGGTGGTCTCCG 90355148 (Coprinopsis cenerea) LD016 149 GCAGCAATTTCATTGTGAGGCAGACCAG 50285562 (Candida glabrata CBS 138) LD016 150 ATGGAGTTCATCACGTCAATAGC 68419480 (Phytophthora parasitica) LD016 151 GGTCTGCCTCACAATGAAATTGCTGCCCAGAT 85109950 (Neurospora crassa) LD016 152 CTATTGTTTTCGCTGCTATGGGTGTTAACATG 50423336 (Debaryomyces hansenii), 90540142 (Gloeophyllum GA trabeum) LD016 153 ATGAACTCCATTGCTCGTGGTCAGAAGAT 84573655 (Aspergillus oryzae) LD016 154 ATAGGAATCTGGGTGATGGATCCGTT 90562068 (Leucosporidium scottii), 90359845 (Aureobasidium pullulans) LD016 155 TCCTGTTTCTGAAGATATGTTGGG 90388021 (Cunninghamella elegans) LD016 156 TTTGAAGATTGAAGATTTCTTGGAACG 50294437 (Candida glabrata CBS 138), 110468393 (Rhizopus oryzae), 90388664 (Cunninghamella elegans), 90376235 (Amorphotheca resinae) LD027 157 TCACAGGCAGCGAAGATGGTACC 90546087 (Gloeophyllum trabeum) LD027 158 TTCTTTGAAGTTTTTGAATAT 50292600 (Candida glabrata CBS 138) -
TABLE 6-PC Target ID SEQ ID NO Sequence* Example Gi-number and species PC001 447 CCCTGCTGGTTTCATGGATGTCAT 110469463 (Rhizopus oryzae) PC003 448 ATTGAAGATTTCTTGGAAAGAAG 50294437 (Candida glabrata CBS 138) PC003 449 TTGAAGATTTCTTGGAAAGAAG 50310014 (Kluyveromyces lactis NRRL Y-1140) PC003 450 CTTCTTTCCAAGAAATCTTCAA 622611 (Saccharomyces cerevisiae) PC003 451 GACTCGCAGAAGCACATCGACTT 109744873 (Allomyces macrogynus); 59284959 (Blastocladiella emersonii); 90623359 (Corynascus heterothallicus); 29427071 (Verticillium dahliae) PC003 452 GACTCGCAGAAGCACATCGACTTC 59298648 (Blastocladiella emersonii); 90565029 (Leucosporidium scottii) PC003 453 TCGCAGAAGCACATCGACTTC 47032157 (Mycosphaerella graminicola) PC003 454 CAGAAGCACATCGACTTCTCCCT 34332427 (Ustilago maydis) PC005 455 CTTATGGAGTACATCCACAAG 98997063 (Spizellomyces punctatus) PC005 456 AAGAAGAAGCAGAGAAGGCCA 84572408 (Aspergillus oryzae) PC010 457 GTGTTCAATAATTCTCCTGATGA 50288722 (Candida glabrata CBS 138) PC010 458 ATTTTCCATGGAGAGACCATTGC 70990481 (Aspergillus fumigatus) PC010 459 GGGCAGAATCCCCAAGCTGCC 90631635 (Thermomyces lanuginosus) PC014 460 AATACAAGGACGCCACCGGCA 30394561 (Magnaporthe grisea) PC016 461 ATGCCCAACGACGACATCACCCA 59281308 (Blastocladiella emersonii) PC016 462 TGGGTGATGTCGTCGTTGGGCAT 38353161 (Hypocrea jecorina) PC016 463 GGTTTCCCCGGTTACATGTACAC 34447668 (Cryphonectria parasitica) PC016 464 ACTATGCCCAACGACGACATCAC 34447668 (Cryphonectria parasitica) PC016 465 CCGGGCACTTCTTCTCGAGCGGC 38353161 (Hypocrea jecorina) PC016 466 CCGACCATCGAGCGCATCATCAC 59281308 (Blastocladiella emersonii) PC016 467 TTCTTGAACTTGGCCAACGATCC 50285562 (Candida glabrata CBS 138) PC016 468 TGTTCTTGAACTTGGCCAACGA 66909391 (Phaeosphaeria nodorum) PC016 469 GCTATGGGTGTCAACATGGAAACTGC 110463410 (Rhizopus oryzae) PC016 470 TGCTATGGGTGTCAACATGGA 71006197 (Ustilago maydis) PC016 471 CTATTGTGTTTGCTGCTATGGGTGT 68488910 (Candida albicans) PC016 472 TACGAGCGCGCCGGTCGTGTGGA 90347883 (Coprinopsis cinerea) -
TABLE 6-EV Target ID SEQ ID NO Sequence* Example Gi-number and species EV010 565 TTCAATAATTCACCAGATGAAAC 50405834 (Debaryomyces hansenii) EV015 566 CGATCGCCTTGAACAGCGACG 22502898 (Gibberella zeae) EV015 567 GTTACCATGGAGAACTTCCGTTA 67900533 (Aspergillus nidulans FGSC A4) EV015 568 GTTACCATGGAGAACTTCCGTTACGCC 70820241 (Aspergillus niger) EV015 569 ACCATGGAGAACTTCCGTTACGCC 84573628 (Aspergillus oryzae) EV015 570 ATGGAGAACTTCCGTTACGCC 71002727 (Aspergillus fumigatus) EV016 571 TCTGAAGATATGTTGGGTCGTGT 90396765 (Cunninghamella elegans) EV016 572 CAAAAGATTCCAATTTTCTCTGCA 50306984 (Kluyveromyces lactis NRRL Y-1140) EV016 573 CCCCACAATGAAATCGCTGCTCAAAT 68001221 (Schizosaccharomyces pombe 972h-) EV016 574 ATCGTTTTCGCCGCTATGGGTGT 58271359 (Cryptococcus neoformans var.) EV016 575 TTCAAGCAAGATTTTGAAGAGAATGG 50285562 (Candida glabrata CBS 138) -
TABLE 6-AG Target ID SEQ ID NO Sequence* Example Gi-number and species AG001 752 CGTAACAGGTTGAAGTACGCCCT 16931515 (Coccidioides posadasii) AG001 753 AAGGTCGACGGCAAAGTCAGGACTGAT 33515688 (Cryptococcus neoformans var.) AG001 754 CCATTCTTGGTCACCCACGATG 38132640 (Hypocrea jecorina) AG001 755 ATCAAGGTAAACGACACCATC 56939474 (Puccinia graminis f. sp.) AG005 756 TGTACATGAAGGCCAAGGGTAACGTGTTCAAGAACAAG 98997063 (Spizellomyces punctatus) AG005 757 CCAAGGGTAACGTGTTCAAGAACAAG 109744763 (Allomyces macrogynus); 59297176 (Blastocladiella emersonii) AG005 758 AAGGGTAACGTGTTCAAGAACAAG 109741162 (Allomyces macrogynus) AG005 759 CAAGAAGAAGGCTGAGAAGGC 67903433 (Aspergillus nidulans FGSC A4) AG005 760 CAAGAAGAAGGCTGAGAAGGC 4191107 (Emericella nidulans) AG005 761 AAGAAGAAGGCTGAGAAGGCC 66909252 (Phaeosphaeria nodorum) AG005 762 CAAAACATCCGTAAATTGATCAAGGATGGTTT 21649803 (Conidiobolus coronatus) AG016 763 TTCGCCGCCATGGGTGTCAAC 50554108 (Yarrowia lipolytica) AG016 764 ATGGGTGTCAACATGGAAACCGC 90639144 (Trametes versicolor) AG016 765 TGGAAACCGCCCGTTTCTTCA 85109950 (Neurospora crassa) AG016 766 GGTTACATGTACACCGATTTG 32169825 (Mucor circinelloides) AG016 767 GTCAAGATGGGAATCTGGGTGATGGA 38353161 (Hypocrea jecorina) -
TABLE 6-TC Target ID SEQ ID NO Sequence* Example Gi-number and species TC001 855 AACAGGCTGAAGTATGCCTTGACC 90545567 (Gloeophyllum trabeum) TC015 856 TTCATCGTCCGTGGTGGCATG 46122304 (Gibberella zeae PH-1) TC015 857 AGTTTTACCGGTACCTGGAGG 50310636 (Kluyveromyces lactis NRRL Y-1140) TC015 858 CCTCCAGGTACCGGTAAAACT 85114224 (Neurospora crassa) TC015 859 CCTCCAGGTACCGGTAAAACTTT 50290674 (Candida glabrata CBS 138) TC015 860 ATTAAAGTTTTACCGGTACCTGGAGG 3356460 (Schizosaccharomyces pombe) TC015 861 GGTGCTTTCTTCTTCTTAATCAA 21649889 (Conidiobolus coronatus) TC015 862 ATCAACGGTCCCGAAATTATG 82610024 (Phanerochaete chrysosporium) -
TABLE 6-MP Target ID SEQ ID NO Sequence* Example Gi-number and species MP002 1026 AATTTTTAGAAAAAAAAATTG 68026454 (Schizosaccharomyces pombe 972h-) MP010 1027 GTCACCACATTAGCTAGGAAT 48564349 (Coccidioides posadasii) MP016 1028 AAGAAATGATTCAAACTGGTAT 90396765 (Cunninghamella elegans) MP016 1029 AAGAAATGATTCAAACTGGTATTTC 110463410 (Rhizopus oryzae) MP016 1030 CATGAACTCTATTGCTCGTGG 50285562 (Candida glabrata CBS 138) MP016 1031 GCTGCTATGGGTGTTAATATGGA 90348219 (Coprinopsis cinerea) MP016 1032 TGCTATGGGTGTTAATATGGAAAC 90396964 (Cunninghamella elegans) MP016 1033 CCTACTATTGAGCGTATCATTAC 90524974 (Geomyces pannorum) MP016 1034 GAAGTTTCTGCTGCTCGTGAAGAAGTACCTGG 90396313 (Cunninghamella elegans) MP016 1035 GTTTCTGCTGCTCGTGAAGAAGT 32169825 (Mucor circinelloides) MP016 1036 GTGTACATGTAACCAGGGAAACCACG 45392344 (Magnaporthe grisea) MP016 1037 CCTGGTTACATGTACACCGATTT 32169825 (Mucor circinelloides) MP016 1038 GGTTACATGTACACCGATTTA 47067814 (Eremothecium gossypii) MP016 1039 CCTATTTTAACTATGCCTAACGA 90396313 (Cunninghamella elegans) MP027 1040 ACTCTCCATCACCACATACTA 60673889 (Alternaria brassicicola) -
TABLE 6-NL SEQ Target ID ID No Sequence* Example Gi-number and species NL001 1474 CCAAGGGCAAGGGTGTGAAGCTCA 30418788 (Magnaporthe grisea) NL001 1475 TCTCTGCCCAAGGGCAAGGGTGT 22500578 (Gibberella zeae), 46128672 (Gibberella zeae PH-1), 70662858 (Gibberella moniliformis), 71000466 (Aspergillus fumigatus) NL001 1476 TCTGCCCAAGGGCAAGGGTGT 14664568 (Fusarium sporotrichioides) NL001 1477 TCTCTGCCCAAGGGCAAGGGT 50550586 (Yarrowia lipolytica) NL001 1478 TCTCTGCCCAAGGGCAAGGGTGT 71000466 (Aspergillus fumigatus) 92459259 (Gibberella zeae) NL001 1479 CTGCCCAAGGGCAAGGGTGTGAAG 90545567 (Gloeophyllum trabeum) NL003 1480 ATGAAGCTCGATTACGTCTTGG 24446027 (Paracoccidioides brasiliensis) NL003 1481 CGTAAGGCCGCTCGTGAGCTG 10229753 (Phytophthora infestans) NL003 1482 CGTAAGGCCGCTCGTGAGCTGTTGAC 58082846 (Phytophthora infestans) NL003 1483 GACTCGCAGAAGCACATTGACTT 21393181 (Pratylenchus penetrans), 34330401 (Ustilago maydis) NL003 1484 TGAAGCTCGATTACGTCTTGG 46346864 (Paracoccidioides brasiliensis) NL003 1485 TGGCCAAGTCCATCCATCACGCCCGTGT 58113938 (Phytophthora infestans) NL004 1486 CGTAACTTCCTGGGCGAGAAG 58127885 (Phytophthora infestans) NL003 1487 ATGAAGCTCGATTACGTCTTGG 90366381 (Aureobasidium pullulans) NL003 1488 TCGGTTTGGCCAAGTCCATCCA 90353540 (Coprinopsis cinerea) NL003 1489 GACTCGCAGAAGCACATTGACTT 71012467 (Ustilago maydis) NL003 1490 GACTCGCAGAAGCACATTGACTTCTC 90616286 (Ophiostoma piliferum) NL004 1491 TACGCCCATTTCCCCATCAAC 15771856 (Gibberella zeae), 29426217 (Verticillium dahliae), 30399988 (Magnaporthe grisea), 34330394 (Ustilago maydis), 39945691 (Magnaporthe grisea 70-15), 46108543 (Gibberella zeae PH-1), 70660620 (Gibberella moniliformis) NL004 1492 CGTGTACGCCCATTTCCCCATCAAC 90615722 (Ophiostoma piliferum) NL004 1493 TACGCCCATTTCCCCATCAAC 90367524 (Aureobasidium pullulans) 90372622 (Cryptococcus laurentii) 109654277 (Fusarium oxysporum f. sp.) 90535059 (Geomyces pannorum) 46108543 (Gibberella zeae PH-1) 90566138 (Leucosporidium scottii) 39945691 (Magnaporthe grisea 70-15) 110115733 (Saitoella complicata) 110081735 (Tuber borchii) 71021510 (Ustilago maydis) 50554252 (Yarrowia lipolytica) NL004 1494 TACGCCCATTTCCCCATCAACTG 90640952 (Trametes versicolor) NL004 1495 CGTGTACGCCCATTTCCCCATCAAC 90615722 (Ophiostoma piliferum) NL005 1496 AAAAGGTCAAGGAGGCCAAGA 14662414 (Fusarium sporotrichioides) NL005 1497 TTCAAGAACAAGCGTGTATTGATGGA 90395504 (Cunninghamella elegans) NL005 1498 TTCAAGAACAAGCGTGTATTGATGGAGT 90542553 (Gloeophyllum trabeum) NL006 1499 CCTGGAGGAGGAGACGACCAT 70998503 (Aspergillus fumigatus) NL006 1500 TCCCATCTCGTATGACAATTGG 68471154 (Candida albicans) NL006 1501 ATGGTCGTCTCCTCCTCCAGG 70998503 (Aspergillus fumigatus) NL006 1502 TCCCATCTCGTATGACAATTGG 68471154 (Candida albicans) 50425488 (Debaryomyces hansenii) NL007 1503 CAAGTCATGATGTTCAGTGCAAC 70984614 (Aspergillus fumigatus) NL007 1504 TGACGCTTCACGGCCTGCAGCAG 10229203 (Phytophthora infestans) NL007 1505 CAAGTCATGATGTTCAGTGCAAC 70984614 (Aspergillus fumigatus) NL010_2 1506 CAATTCTTGCAAGTGTTCAACAA 68478799 (Candida albicans) NL010_2 1507 TTCAACAACAGTCCTGATGAAAC 21649260 (Conidiobolus coronatus) NL010_2 1508 TTCTTGCAAGTGTTCAACAAC 47031965 (Mycosphaerella graminicola) NL011 1509 AAGAACGTTCCCAACTGGCAC 68132303 (Trichophyton rubrum) NL011 1510 ACAAGAACGTTCCCAACTGGCA 68132303 (Trichophyton rubrum) NL011 1511 ACCTACAAGAACGTTCCCAACT 68132303 (Trichophyton rubrum) NL011 1512 ACCTACAAGAACGTTCCCAACTGGCAC 70674996 (Gibberella moniliformis) NL011 1513 CAACTACAACTTCGAGAAGCC 22500425 (Gibberella zeae), 34331122 (Ustilago maydis), 46108433 (Gibberella zeae PH-1), 47029512 (Mycosphaerella graminicola), 56236507 (Setosphaeria turcica), 62926335 (Fusarium oxysporum f. sp.), 70674996 (Gibberella moniliformis), 70992714 (Aspergillus fumigatus) NL011 1514 CAAGAACGTTCCCAACTGGCAC 68132303 (Trichophyton rubrum) NL011 1515 CACCTACAAGAACGTTCCCAAC 68132303 (Trichophyton rubrum) NL011 1516 CCTACAAGAACGTTCCCAACTG 68132303 (Trichophyton rubrum) NL011 1517 CTACAAGAACGTTCCCAACTGG 68132303 (Trichophyton rubrum) NL011 1518 GCAACTACAACTTCGAGAAGCC 22505588 (Gibberella zeae) NL011 1519 TACAAGAACGTTCCCAACTGGC 68132303 (Trichophyton rubrum) NL011 1520 TCACCTACAAGAACGTTCCCA 68132303 (Trichophyton rubrum) NL011 1521 TCACCTACAAGAACGTTCCCAA 68132303 (Trichophyton rubrum) NL011 1522 TCACCTACAAGAACGTTCCCAACT 30405871 (Magnaporthe grisea) NL011 1523 TCACCTACAAGAACGTTCCCAACTGGCAC 13903501 (Blumeria graminis f. sp.), 3140444 (Emericella nidulans), 34331122 (Ustilago maydis), 49096317 (Aspergillus nidulans FGSC A4) NL011 1524 TGGGACACAGCTGGCCAGGAAA 14180743 (Magnaporthe grisea), 39950145 (Magnaporthe grisea 70-15) NL011 1525 TTCGAGAAGCCGTTCCTGTGG 38056576 (Phytophthora sojae), 45244260 (Phytophthora nicotianae), 58091236 (Phytophthora infestans) NL011 1526 TTCGAGAAGCCGTTCCTGTGGTTGGC 58090083 (Phytophthora infestans) NL011 1527 TGGGACACAGCTGGCCAGGAAA 39950145 (Magnaporthe grisea 70-15) NL011 1528 TATTACATTCAGGGACAATGCG 110134999 (Taphrina deformans) NL011 1529 TCACCTACAAGAACGTTCCCAACTGGCAC 84573903 (Aspergillus oryzae) 90355199 (Coprinopsis cinerea) 90624693 (Corynascus heterothallicus) 90638500 (Thermomyces lanuginosus) NL011 1530 ACCTACAAGAACGTTCCCAACTGGCAC 113544700 (Cordyceps bassiana) 85114463 (Neurospora crassa) NL011 1531 TACAAGAACGTTCCCAACTGGCA 110269748 (Hypocrea lixii) NL011 1532 TACAAGAACGTTCCCAACTGGCAC 110458937 (Rhizopus oryzae) NL011 1533 AGGAAGAAGAACCTTCAGTACT 90557551 (Leucosporidium scottii) NL011 1534 AAGAAGAACCTTCAGTACTACGA 113551594 (Cordyceps bassiana) NL011 1535 AAGAAGAACCTTCAGTACTACGACATC 90036917 (Trichophyton rubrum) NL011 1536 AAGAACCTTCAGTACTACGACATC 90624693 (Corynascus heterothallicus) NL011 1537 GGCTTCTCGAAGTTGTAGTTGC 89975123 (Hypocrea lixii) NL011 1538 CAACTACAACTTCGAGAAGCC 70992714 (Aspergillus fumigatus) 90368808 (Aureobasidium pullulans) 90629512 (Corynascus heterothallicus) 109656121 (Fusarium oxysporum f. sp.) 90532849 (Geomyces pannorum) 110272576 (Hypocrea lixii) 47029512 (Mycosphaerella graminicola) 85114463 (Neurospora crassa) 90617165 (Ophiostoma piliferum) 90036917 (Trichophyton rubrum) NL011 1539 GGCTTCTCGAAGTTGTAGTTG 92233975 (Gibberella zeae) NL013 1540 CCCGAGATGGTGGTGGGCTGGTACCA 49069733 (Ustilago maydis) NL013 1541 GGTACCACTCGCACCCGGGCTT 58134950 (Phytophthora infestans) NL013 1542 GTGGGCTGGTACCACTCGCACCCGGGCTTCGG 38062327 (Phytophthora sojae) CTGCTGGCTGTCGGG NL013 1543 TGGTACCACTCGCACCCGGGCTT 58084933 (Phytophthora infestans) NL013 1544 CCCGAGATGGTGGTGGGCTGGTACCA 71006043 (Ustilago maydis) NL015 1545 ATCCACACCAAGAACATGAAG 10181857 (Aspergillus niger), 22505190 (Gibberella zeae), 30394634 (Magnaporthe grisea), 33507832 (Cryptococcus neoformans var.), 3773467 (Emericella nidulans), 39940093 (Magnaporthe grisea 70-15), 46122304 (Gibberella zeae PH-1), 47032030 (Mycosphaerella graminicola), 49106059 (Aspergillus nidulans FGSC A4) NL015 1546 CACACCAAGAACATGAAGTTGG 21649889 (Conidiobolus coronatus) NL015 1547 GCCTTCTTCTTCCTCATCAACGG 46122304 (Gibberella zeae PH-1) NL015 1548 TTGGAGGCTGCAGAAAGCAGCT 90369178 (Cryptococcus laurentii) NL015 1549 GCCTTCTTCTTCCTCATCAACGG 46122304 (Gibberella zeae PH-1) NL015 1550 ATCCACACCAAGAACATGAAG 70820941 (Aspergillus niger) 58260307 (Cryptococcus neoformans var.) 85691122 (Encephalitozoon cuniculi GB-M1) 46122304 (Gibberella zeae PH-1) 39940093 (Magnaporthe grisea 70-15) 85082882 (Neurospora crassa) 50555821 (Yarrowia lipolytica) NL015 1551 CACACCAAGAACATGAAGTTGGC 110272618 (Hypocrea lixii) NL016 1552 CATGAACTCGATTGCTCGTGG 30418452 (Magnaporthe grisea), 39942327 (Magnaporthe grisea 70-15) NL016 1553 CCACCATCTACGAGCGCGCCGGACG 39942327 (Magnaporthe grisea 70-15), 45392344 (Magnaporthe grisea) NL016 1554 CATGAACTCGATTGCTCGTGG 90367610 (Aureobasidium pullulans) 39942327 (Magnaporthe grisea 70-15) NL016 1555 CATGTCGGTGAGGATGACGAG 90562068 (Leucosporidium scottii) NL016 1556 CCACCATCTACGAGCGCGCCGGACG 39942327 (Magnaporthe grisea 70-15) NL019 1557 CAGATTTGGGACACGGCCGGCCAGGAGCG 9834078 (Phytophthora sojae) NL019 1558 GACCAGGAGTCGTTCAACAAC 9834078 (Phytophthora sojae) NL019 1559 TGGGACACGGCCGGCCAGGAG 38056576 (Phytophthora sojae), 40545332 (Phytophthora nicotianae), 58083674 (Phytophthora infestans) NL019 1560 TGGGACACGGCCGGCCAGGAGCG 29426828 (Verticillium dahliae), 38057141 (Phytophthora sojae) NL019 1561 TGGGACACGGCCGGCCAGGAGCGGTT 70981934 (Aspergillus fumigatus) NL019 1562 TTCCTGGAGACGTCGGCGAAGAACGC 90643518 (Trametes versicolor) NL019 1563 CAGATTTGGGACACGGCCGGCCAGGAGCG 90616605 (Ophiostoma piliferum) NL019 1564 TGGGACACGGCCGGCCAGGAG 110272626 (Hypocrea lixii) NL019 1565 TGGGACACGGCCGGCCAGGAGCG 50550714 (Yarrowia lipolytica) NL019 1566 TGGGACACGGCCGGCCAGGAGCGGTT 70981934 (Aspergillus fumigatus) NL019 1567 TGGGACACGGCCGGCCAGGAGCGGTTCCG 50553761 (Yarrowia lipolytica) NL022 1568 CAGGCAAAGATTTTCCTGCCCA 58124185 (Phytophthora infestans) NL022 1569 GGCAAGTGCTTCCGTCTGTACAC 58124872 (Phytophthora infestans) NL023 1570 GGATGACCAAAAACGTATTCT 46137132 (Gibberella zeae PH-1) NL023 1571 AGAATACGTTTTTGGTCATCC 46137132 (Gibberella zeae PH-1) -
TABLE 6-CS SEQ Target ID ID NO Sequence* Example Gi-number and species CS003 2002 TGGTCTCCGCAACAAGCGTGA 46356829 (Paracoccidioides brasiliensis) CS003 2003 GGTCTCCGCAACAAGCGTGAG 71012467 (Ustilago maydis) CS003 2004 TGGTCTCCGCAACAAGCGTGAGGT 5832048 (Botryotinia fuckeliana) CS003 2005 TGGTCTCCGCAACAAGCGTGAGGT 40545704 (Sclerotinia sclerotiorum) CS003 2006 GGTCTCCGCAACAAGCGTGAGGT 21907821 (Colletotrichum trifolii); 90623359 (Corynascus heterothallicus); 94331331 (Pyronema omphalodes); 29427071 (Verticillium dahliae) CS003 2007 TGGTCTCCGCAACAAGCGTGAGGTGTGG 27439041 (Chaetomium globosum); 47032270 (Mycosphaerella graminicola) CS003 2008 CGCAACAAGCGTGAGGTGTGG 71000428 (Aspergillus fumigatus); 67537265 (Aspergillus nidulans FGSC A4); 70825441 (Aspergillus niger); 84573806 (Aspergillus oryzae); 3773212 (Emericella nidulans); 90632673 (Thermomyces lanuginosus); 34332427 (Ustilago maydis) CS006 2009 TCCCCTCTCGTATGACAATTGGT 68011927 (Schizosaccharomyces pombe 972h-) CS007 2010 ATTTAGCTTTGACAAAGAATA 50305206 (Kluyveromyces lactis NRRL Y-1140) CS007 2011 GAGCACCCTTCAGAAGTTCAACA 90553133 (Lentinula edodes) CS011 2012 TGGGATACTGCTGGCCAAGAA 90385536 (Amorphotheca resinae); 68475609 (Candida albicans); 50304104 (Kluyveromyces lactis NRRL Y-1140); 85105150 (Neurospora crassa) CS011 2013 AAGTTTGGTGGTCTCCGAGATGGTTACTA 90355199 (Coprinopsis cinerea) CS011 2014 CAATGTGCCATCATCATGTTCGA 15276938 (Glomus intraradices) CS011 2015 CATCATCATGTTCGATGTAAC 28268268 (Chaetomium globosum) CS011 2016 CACTTGACTGGAGAGTTCGAGAA 90368808 (Aureobasidium pullulans); 34331122 (Ustilago maydis) CS011 2017 TGAAGGTTCTTTTTTCTGTGGAA 6831345 (Pneumocystis carinii) CS013 2018 GGATGGTACCACTCGCATCCTGG 109651225 (Fusarium oxysporum f. sp.) CS015 2019 AACGAGAGGAAGAAGAAGAAG 39944615 (Magnaporthe grisea 70-15) CS015 2020 AGGGCTTCTTCTTCTTCCTCTC 14662870 (Fusarium sporotrichioides) CS015 2021 TAGGGCTTCTTCTTCTTCCTC 85112692 (Neurospora crassa) CS015 2022 GAGATGGTCGAGTTGCCTCTA 71005073 (Ustilago maydis) CS016 2023 GCTGAAGACTTTTTGGACATC 30418452 (Magnaporthe grisea) CS016 2024 CCTCACCAAGTTCGAGAAGAACTTC 90566317 (Leucosporidium scottii) CS016 2025 GTCGTCGGTGAGGAAGCCCTG 84573655 (Aspergillus oryzae) CS016 2026 TCCTCACCGACGACAGCCTTCATGGCC 29427786 (Verticillium dahliae) CS016 2027 GATGTTTCCAACCAGCTGTACGCC 90368806 (Aureobasidium pullulans) CS016 2028 GGCGTACAGCTGGTTGGAAACATC 29427786 (Verticillium dahliae) CS016 2029 TGATGTTTCCAACCAGCTGTACGCC 46107507 (Gibberella zeae PH-1) CS016 2030 ATGGCAGACTTCATGAGACGAGA 29427786 (Verticillium dahliae) CS016 2031 ATGCCCAACGACGACATCACCCA 59281308 (Blastocladiella emersonii) CS016 2032 TGGGTGATGTCGTCGTTGGGCAT 38353161 (Hypocrea jecorina) CS016 2033 ACTATGCCCAACGACGACATCAC 34447668 (Cryphonectria parasitica) CS016 2034 GGTTACATGTACACCGATTTG 32169825 (Mucor circinelloides) CS016 2035 CCCAGGTTACATGTACACCGATTT 47067814 (Eremothecium gossypii) CS016 2036 ACACCACGTTTGGCCTTGACT 68488910 (Candida albicans) CS016 2037 GCCATGGGTGTGAACATGGAGAC 82608508 (Phanerochaete chrysosporium) CS016 2038 GACGACCACGAGGACAACTTTGCCATCGTGTTCG 59277641 (Blastocladiella emersonii) CS016 2039 AAGATCCCCATTTTCTCGGCTGC 90348219 (Coprinopsis cinerea) -
TABLE 6-PX Target ID SEQ ID NO Sequence* Example Gi-number and species PX001 2299 CTCATCAAGGTGGACGGCAAGGT 85080580 (Neurospora crassa) PX001 2300 TCGGTGCGGACCTTGCCGTCCACCTTGA 70768092 (Gibberella moniliformis) PX001 2301 GACGGCAAGGTCCGCACCGAC 109745014 (Allomyces macrogynus); 60673542 (Alternaria brassicicola); 90368699 (Aureobasidium pullulans); 59299145 (Blastocladiella emersonii); 27438899 (Chaetomium globosum); 90623992 (Corynascus heterothallicus); 89975695 (Hypocrea lixii); 99039195 (Leptosphaeria maculans); 39970560 (Magnaporthe grisea); 47731115 (Metarhizium anisopliae); 90036859 (Trichophyton rubrum); 29427127 (Verticillium dahliae) PX001 2302 GACGGCAAGGTCCGCACCGACCC 70823112 (Aspergillus niger); 90633197 (Thermomyces lanuginosus) PX001 2303 AAGGTCCGCACCGACCCCACCTACCC 71015993 (Ustilago maydis) PX001 2304 CGCTTCACCATCCACCGCATCAC 90639458 (Trametes versicolor) PX001 2305 CGAGGAGGCCAAGTACAAGCTG 78177454 (Chaetomium cupreum); 27438899 (Chaetomium globosum) PX001 2306 GAGGCCAAGTACAAGCTGTGCAAGGT 109745014 (Allomyces macrogynus) PX001 2307 GCCAAGTACAAGCTGTGCAAG 45923813 (Coccidioides posadasii) PX001 2308 CCCGACCCGCTCATCAAGGTCAACGAC 78177454 (Chaetomium cupreum) PX001 2309 CGACATCGTCCACATCAAGGAC 82603501 (Phanerochaete chrysosporium) PX001 2310 CCGCACAAGCTGCGCGAGTGCCTGCCGCTC 109745014 (Allomyces macrogynus) PX010 2311 TTCGACCAGGAGGCGGCGGCGGT 90542152 (Gloeophyllum trabeum) PX010 2312 CACCACCGCCGCCGCCTCCTG 84578035 (Aspergillus oryzae) PX010 2313 TGCAGGTCTTCAACAACTCGCCCGACGA 39978050 (Magnaporthe grisea) PX010 2314 TTCAACAACTCGCCCGACGAGAC 90618424 (Corynascus heterothallicus) PX015 2315 CATGCGCGCCGTCGAGTTCAAGGTGGT 59282860 (Blastocladiella emersonii) PX015 2316 GCATTCTTCTTCCTCATCAACGG 68323226 (Coprinopsis cinerea) PX015 2317 ATCAACGGCCCCGAGATCATGTC 85082882 (Neurospora crassa) PX015 2318 TGCGCAAGGCGTTCGAGGAGGC 71002727 (Aspergillus fumigatus) PX016 2319 CCTCACCAAGTTCGAGAAGAACTTC 90566317 (Leucosporidium scottii) PX016 2320 GAGGAGATGATCCAGACTGGTAT 90639144 (Trametes versicolor) PX016 2321 GAGGAGATGATCCAGACTGGTATCTC 58271359 (Cryptococcus neoformans) PX016 2322 ATGAACTCCATCGCCCGTGGTCAGAAGATCCC 90545177 (Gloeophyllum trabeum) PX016 2323 GTCAGAAGATCCCCATCTTCTCCGCC 9651842 (Emericella nidulans) PX016 2324 CAGAAGATCCCCATCTTCTCCGC 70825597 (Aspergillus niger); 90611576 (Ophiostoma piliferum); 90639144 (Trametes versicolor) PX016 2325 CAGAAGATCCCCATCTTCTCCGCC 67540123 (Aspergillus nidulans) PX016 2326 CAGAAGATCCCCATCTTCTCCGCCGCCGG 59283275 (Blastocladiella emersonii) PX016 2327 AAGATCCCCATCTTCTCCGCCGCCGGTCT 34447668 (Cryphonectria parasitica) PX016 2328 CCCATCTTCTCCGCCGCCGGTCTGCC 90621827 (Corynascus heterothallicus) PX016 2329 GGTCTGCCCCACAACGAGATTGCTGC 90367610 (Aureobasidium pullulans); 66909391 (Phaeosphaeria nodorum) PX016 2330 TTCGCCGCCATGGGAGTCAACATGGAGAC 90562163 (Leucosporidium scottii) PX016 2331 ACCGCCAGGTTCTTCAAGCAGGA 47067814 (Eremothecium gossypii) PX016 2332 CTGTTCTTGAACTTGGCCAATGA 90545177 (Gloeophyllum trabeum) PX016 2333 GGTTACATGTACACGGATTTG 34447668 (Cryphonectria parasitica); 90545177 (Gloeophyllum trabeum); 39942327 (Magnaporthe grisea); 82608506 (Phanerochaete chrysosporium); 71006197 (Ustilago maydis) PX016 2334 GGCAAGCCCATCGACAAGGGGCCC 59283275 (Blastocladiella emersonii) PX016 2335 ATGGGGTGGGTGATGTCGTCGTTGGGCATGGTCA 38353161 (Hypocrea jecorina) PX016 2336 ACCATGCCCAACGACGACATCACCCACCC 59281308 (Blastocladiella emersonii) PX016 2337 TGCACAACAGGCAGATCTACCC 107889579 (Encephalitozoon cuniculi) PX016 2338 CCGTCGCTATCTCGTCTCATGAA 48521040 (Coccidioides posadasii) -
TABLE 6-AD SEQ Target ID ID NO Sequence* Example Gi-number and species AD001 2441 CCCGCTGGTTTCATGGATGTT 58259586 (Cryptococcus neoformans) AD001 2442 GACAACATCCATGAAACCAGCGGG 21649877 (Conidiobolus coronatus) AD001 2443 TTCATGGATGTTGTCACCATTG 90616000 (Ophiostoma piliferum) AD001 2444 GAAGAAGCCAAGTACAAGCTCTG 110469512 (Rhizopus oryzae) AD001 2445 AAGAAGCCAAGTACAAGCTCTG 110469518 (Rhizopus oryzae) AD001 2446 GCCAAGTACAAGCTCTGCAAGGT 98996590 (Spizellomyces punctatus) AD001 2447 GCCAAGTACAAGCTCTGCAAGGTCA 109743129 (Allomyces macrogynus) AD001 2448 AGTACAAGCTCTGCAAGGTCA 71000466 (Aspergillus fumigatus); 67537247 (Aspergillus nidulans); 70823112 (Aspergillus niger); 40886470 (Emericella nidulans) AD015 2449 TATGGACCCCCTGGAACTGGTAAAACC 46349704 (Paracoccidioides brasiliensis) AD016 2450 TGCCCGTGTCCGAGGACATGCTGGGCCG 109743322 (Allomyces macrogynus) AD016 2451 TGCCCGTGTCCGAGGACATGCTGGGCCGC 59283275 (Blastocladiella emersonii) AD016 2452 CGTGTCCGAGGACATGCTGGGCCGCA 90612905 (Ophiostoma piliferum) AD016 2453 ATGGGCGTCAACATGGAGACGGC 59277641 (Blastocladiella emersonii) AD016 2454 TGGAGACGGCGCGCTTCTTCA 90611376 (Ophiostoma piliferum) AD016 2455 TTCCTCAACCTGGCCAACGACCCCAC 90611376 (Ophiostoma piliferum) AD016 2456 ACCATCGAGCGCATCATCACCCCGCGCCTCGC 59281308 (Blastocladiella emersonii) AD016 2457 TCCACCATCTACGAGCGCGCTGG 90368806 (Aureobasidium pullulans) AD016 2458 CTGACGATGCCCAACGACGACATCAC 90611301 (Ophiostoma piliferum) AD016 2459 ATGCCCAACGACGACATCACCCA 59281308 (Blastocladiella emersonii) AD016 2460 TGGGTGATGTCGTCGTTGGGCAT 38353161 (Hypocrea jecorina) -
TABLE 7-LD Target ID SEQ ID NO and DNA Sequence (sense strand) 5′ → 3′ of fragments and concatemer constructs LD014_F1 SEQ ID NO: 159 TCTAGAATGTTGAATCAGGCTCGATTGAAAGTATTGAAGGTTAGGGAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAA CGACTTGGTCAGGTCACAAACGCCCGGG LD014_F2 SEQ ID NO: 160 TCTAGAAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACGCCCGGG LD014_C1 SEQ ID NO: 161 TCTAGAATGTTGAATCAGGCTCGATTGAAAGTATTGAAGGTTAGGGAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAA CGACTTGGTCAGGTCACAAACGATGTTGAATCAGGCTCGATTGAAAGTATTGAAGGTTAGGGAAGATCACGTTCGTACCGTACTA GAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACGATGTTGAATCAGGCTCGATTGAAAGTATTGAAGGTTAGGGAAGATCA CGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACGCCCGGG LD014_C2 SEQ ID NO: 162 TCTAGAAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACGAAGATCACGTTCGTACCGT ACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACGAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACTT GGTCAGGTCACAAACGAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACGAAGATCACG TTCGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACGCCCGGG -
TABLE 8-LD Target Primers Forward Primers Reverse dsRNA DNA Sequence (sense strand) ID 5′ → 3′ 5′ → 3′ 5′ → 3′ LD001 SEQ ID NO: 164 SEQ ID NO: 165 SEQ ID NO: 163 GCGTAATACGACTC CCTTTGGGGCCAGT GGCCCCAAGAAGCATTTGAAGCGTTTGAATGCCCCAAAAGCATGGATGTTGG ACTATAGGGGCCCC TTGCATC ATAAATTGGGAGGTGTTTTCGCACCTCGCCCATCTACAGGACCTCACAAATTG AAGAAGCATTTGAA SEQ ID NO: 167 CGAGAGTCTTTGCCCTTGGTGATCTTCCTACGTAACCGATTGAAGTATGCTTT GCG GCGTAATACGACTC GACTAACAGCGAAGTTACTAAGATTGTTATGCAAAGGTTAATCAAAGTAGATG SEQ ID NO: 166 ACTATAGGCCTTTG GAAAAGTGAGGACCGACTCCAATTACCCTGCTGGGTTTATGGATGTTATTACC GGCCCCAAGAAGCA GGGCCAGTTTGCATC ATTGAAAAAACTGGTGAATTTTTCCGACTCATCTATGATGTTAAAGGACGATTT TTTGAAGCG GCAGTGCATCGTATTACTGCTGAGGAAGCAAAGTACAAACTATGCAAAGTCAG GAGGATGCAAACTGGCCCCAAAGG LD002 SEQ ID NO: 169 SEQ ID NO: 170 SEQ ID NO: 168 GCGTAATACGACTC AAGCGATTAGAAAA GTCCACGTCCAAGTTTTTATGGGCTTTCTTAAGAGCTTCAGCTGCATTTTTCAT ACTATAGGGTCCAC AAATCAGTTGC AGATTCCAATACTGTGGTGTTCGTACTAGCTCCCTCCAGAGCTTCTCGTTGAA GTCCAAGTTTTTATG SEQ ID NO: 172 GTTCAATAGTAGTTAAAGTGCCATCTATTTGCAACTGATTTTTTTCTAATCGCTT GGC GCGTAATACGACTC SEQ ID NO: 171 ACTATAGGAAGCGA GTCCACGTCCAAGT TTAGAAAAAAATCAG TTTTATGGGC TTGC LD003 SEQ ID NO: 174 SEQ ID NO: 175 SEQ ID NO: 173 GCGTAATACGACTC GGTGACCACCACCG GGTGACCACCACCGAATGGAGATTTGAGCGAGAAGTCAATATGCTTCTGGGA ACTATAGGCCCAGG AATGGAG ATCAAGTCTCACAATGAAGCTTGGAATATTCACGACCTGCTTACGAACCCTGA CGACCTTATGAAAA SEQ ID NO: 177 TATGTCTTTGACGGACCAGCACACGAGCATGATGGATTGATTTTGCAAGCCCC GGC GCGTAATACGACTC AACTTGAAAACTTGTGTTTGGAGACGTCGTTCCAAGAAATCTTCAATCTTCAAA SEQ ID NO: 176 ACTATAGGGGTGAC CCCAAGACGTAATCAAGCTTCATACGGGTTTCATCCAACACTCCAATACGCAC CCCAGGCGACCTTA CACCACCGAATGGAG CAACCGACGAAGAAGAGCATTGCCTTCAAACAACCTGCGCTGATCTTTCTCTT TGAAAAGGC CCAAAGTCAGAAGTTCTCTGGCAGCTTTACGGATTTTTGCCAAGGTATACTTG ACTCGCCACACTTCACGTTTGTTCCTAAGACCATATTCTCCTATGATTTTCAAC TCCTGATCAAGACGTGCCTTTTCATAAGGTCGCCTGGG LD006 SEQ ID NO: 179 SEQ ID NO: 180 SEQ ID NO: 178 GCGTAATACGACTC GCTTCGATTCGGCA GGTGTTGGTTGCTTCTGGTGTGGTGGAATACATCGACACTCTTGAAGAAGAAA ACTATAGGGGTGTT TCTTTATAGG CTGTCATGATTGCGATGAATCCTGAGGATCTTCGGCAGGACAAAGAATATGCT GGTTGCTTCTGGTG SEQ ID NO: 182 TATTGTACGACCTACACCCACTGCGAAATCCACCCGGCCATGATCTTGGGCG TG GCGTAATACGACTC TTTGCGCGTCTATTATACCTTTCCCCGATCATAACCAGAGCCCAAGGAACACC SEQ ID NO: 181 ACTATAGGGCTTCG TACCAGAGCGCTATGGGTAAGCAAGCTATGGGGGTCTACATTACGAATTTCCA GGTGTTGGTTGCTT ATTCGGCATCTTTAT CGTGCGGATGGACACCCTGGCCCACGTGCTATACTACCCGCACAAACCTCTG CTGGTGTG AGG GTCACTACCAGGTCTATGGAGTATCTGCGGTTCAGAGAATTACCAGCCGGGA TCAACAGTATAGTTGCTATTGCTTGTTATACTGGTTATAATCAAGAAGATTCTG TTATTCTGAACGCGTCTGCTGTGGAAAGAGGATTTTTCCGATCCGTGTTTTAT CGTTCCTATAAAGATGCCGAATCGAAGC LD007 SEQ ID NO: 184 SEQ ID NO: 185 SEQ ID NO: 183 GCGTAATACGACTC CCTTTCAATGTCCAT GACTGGCGGTTTTGAACACCCTTCAGAAGTTCAGCACGAATGTATTCCTCAAG ACTATAGGGACTGG GCCACG CTGTCATTGGCATGGACATTTTATGTCAAGCCAAATCTGGTATGGGCAAAACG CGGTTTTGAACACCC SEQ ID NO: 187 GCAGTGTTTGTTCTGGCGACACTGCAACAATTGGAACCAGCGGACAATGTTG SEQ ID NO: 186 GCGTAATACGACTC TTTACGTTTTGGTGATGTGTCACACTCGTGAACTGGCTTTCCAAATCAGCAAA GACTGGCGGTTTTG ACTATAGGCCTTTCA GAGTACGAGAGGTTCAGTAAATATATGCCCAGTGTCAAGGTGGGCGTCTTTTT AACACCC ATGTCCATGCCACG CGGAGGAATGCCTATTGCTAACGATGAAGAAGTATTGAAAAACAAATGTCCAC ACATTGTTGTGGGGACGCCTGGGCGTATTTTGGCGCTTGTCAAGTCTAGGAA GCTAGTCCTCAAGAACCTGAAACACTTCATTCTTGATGAGTGCGATAAAATGT TAGAACTGTTGGATATGAGGAGAGACGTCCAGGAAATCTACAGAAACACCCC TCACACCAAGCAAGTGATGATGTTCAGTGCCACACTCAGCAAAGAAATCAGG CCGGTGTGCAAGAAATTCATGCAAGATCCAATGGAGGTGTATGTAGACGATG AAGCCAAATTGACGTTGCACGGATTACAACAGCATTACGTTAAACTCAAAGAA AATGAAAAGAATAAAAAATTATTTGAGTTGCTCGATGTTCTCGAATTTAATCAG GTGGTCATTTTTGTGAAGTCCGTTCAAAGGTGTGTGGCTTTGGCACAGTTGCT GACTGAACAGAATTTCCCAGCCATAGGAATTCACAGAGGAATGGACCAGAAA GAGAGGTTGTCTCGGTATGAGCAGTTCAAAGATTTCCAGAAGAGAATATTGGT AGCTACGAATCTCTTTGGGCGTGGCATGGACATTGAAAGG LD010 SEQ ID NO: 189 SEQ ID NO: 190 SEQ ID NO: 188 GCGTAATACGACTC CTATCGGGTTGGAT GCTTGTTGCCCCCGAATGCCTTGATAGGGTTGATTACCTTTGGGAAGATGGTC ACTATAGGGCTTGTT GGAACTCG CAAGTGCACGAACTAGGTACCGAGGGCTGCAGCAAATCTTACGTTTTCCGAG GCCCCCGAATGC SEQ ID NO: 192 GGACGAAAGACCTCACAGCTAAGCAAGTTCAAGAGATGTTGGAAGTGGGCAG SEQ ID NO: 191 GCGTAATACGACTC AGCCGCAGTAAGTGCTCAACCTGCTCCTCAACAACCAGGACAACCCATGAGG GCTTGTTGCCCCCG ACTATAGGCTATCG CCTGGAGCACTCCAGCAAGCTCCTACGCCACCAGGAAGCAGGTTCCTTCAAC AATGC GGTTGGATGGAACT CCATCTCGAAATGCGACATGAACCTCACTGATCTTATTGGAGAGTTGCAAAGA CG GACCCATGGCCTGTCCACCAAGGCAAATGCGCCCTTAGATCGACCGGGACA GCTTTATCGATAGCCATTGGGTTGTTGGAGTGCACATACGCCAATACTGGTGC CAGGGTCATGCTATTCGTTGGAGGACCTTGCTCTCAAGGCCCTGGTCAAGTC TTGAATGATGATCTGAAGCAACCTATCAGATCTCACCACGACATCCAAAAAGA CAATGCCAAATACATGAAGAAAGCAATCAAGCACTATGATAATTTAGCGATGA GAGCAGCAACGAATGGCCACTGCGTTGACATATATTCATGCGCTTTGGATCA GACAGGATTGATGGAGATGAAACAGTGTTGTAATTCAACAGGGGGACATATG GTCATGGGCGACTCGTTCAATTCTTCCCTGTTCAAGCAAACGTTCCAGCGCAT ATTTTCGAAAGATCAGAAAAACGAGCTGAAGATGGCATTTAATGGTACTCTGG AGGGTCAAGTGTTCCAGGGAGTTGAAAATTCAAGGCGGTATTGGATCTTGTGT TTCGTTGAATGTGAAGAATCCTTTGGTTTCCGACACCGAAATAGGAATGGGTA ACACGGTCCAGTGGAAAATGTGTACGGTAACTCCAAGTACTACCATGGCCTT GTTCTTCGAGGTCGTCAACCAACATTCCGCTCCCATACCTCAAGGGGGAAGG GGCTGCATACAGTTCATCACGCAATATCAGCATGCTAGTGGCCAGAAGAGGA TCCGAGTAACGACAGTTGCTAGAAACTGGGCCGATGCTTCCGCTAATATACAT CATGTCAGTGCTGGATTCGATCAGGAGGCAGCCGCAGTGATAATGGCGAGGA TGGCAGTTTACAGAGCGGAATCAGACGATAGCCCTGATGTTTTGAGATGGGT CGATAGGATGTTGATACGTCTGTGCCAGAAATTCGGCGAATATAACAAGGAC GACCCGAATTCGTTCCGCTTGGGCGAAAACTTCAGCCTCTACCCGCAGTTCA TGTACCATTTGAGAAGGTCACAGTTCCTGCAGGTGTTTAACAATTCTCCCGAC GAAACGTCCTTCTACAGGCACATGCTTATGCGCGAAGACCTCACGCAGTCGC TGATCATGATCCAGCCGATACTCTACAGCTACAGTTTCAATGGACCACCAGAA CCTGTGCTTTTGGATACGAGTTCCATCCAACCCGATAG LD011 SEQ ID NO: 194 SEQ ID NO: 195 SEQ ID NO: 193 GCGTAATACGACTC GGAAAAACGACATT GCCATAGGAAAGGCTTCTCAAAGTTGTAGTTAGATTTGGCAGAGATATCATAG ACTATAGGGCCATA TGTGAAACGTC TACTGCAAATTCTTCTTCCTATGAAAGACAATACTTTTCGCTTTTACTTTTCTGT GGAAAGGCTTCTCA SEQ ID NO: 197 CTTTGATGTCAACCTTGTTCCCGCAAAGTACTATCGGGATATTTTCACAGACTC AAG GCGTAATACGACTC TGACAAGATCTCTGTGCCAATTTGGTACATTCTTGTATGTAACTCTGGAAGTTA SEQ ID NO: 196 ACTATAGGGGAAAA CATCAAACATGATAATAGCACACTGTCCCTGAATGTAATATCCATCACGGAGA GCCATAGGAAAGGC ACGACATTTGTGAAA CCACCAAACTTCTCCTGACCGGCAGTGTCCCATACATTGAACCGAATAGGGC TTCTCAAAG CGTC CCCTGTTTGTATGGAAGACCAGAGGATGGACTTCAACTCCCAAAGTAGCTACA TATCTTTTTTCAAATTCACCAGTCATATGACGTTTCACAAATGTCGTTTTTCC LD014 SEQ ID NO: 199 SEQ ID NO: 200 SEQ ID NO: 198 GCGTAATACGACTC GCGAAATCAGCTCC TTTCATTGAACAAGAGGCAAACGAAAAGGCAGAAGAAATCGATGCCAAGGCC ACTATAGGTTTCATT AGACGAGC GAGGAAGAATTTAATATTGAAAAGGGGCGCCTTGTTCAGCAACAACGTCTCAA GAACAAGAGGCAAA SEQ ID NO: 202 GATTATGGAATATTATGAGAAGAAAGAGAAACAGGTCGAACTCCAGAAAAAAA CG GCGTAATACGACTC TCCAATCGTCTAACATGTTGAATCAGGCTCGATTGAAAGTATTGAAGGTTAGG SEQ ID NO: 201 ACTATAGGGCGAAA GAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGG TTTCATTGAACAAGA TCAGCTCCAGACGA TCACAAACGACCAGGGAAAATATTCCCAAATCCTGGAAAGCCTCATTTTGCAG GGCAAACG GC GGATTATATCAGCTTTTTGAGAAAGATGTTACCATTCGAGTTCGGCCCCAGGA CCGAGAACTGGTCAAATCCATCATTCCCACCGTCACGAACAAGTATAAAGATG CCACCGGTAAGGACATCCATCTGAAAATTGATGACGAAATCCATCTGTCCCAA GAAACCACCGGGGGAATCGACCTGCTGGCGCAGAAAAACAAAATCAAGATCA GCAATACTATGGAGGCTCGTCTGGAGCTGATTTCGC LD014_F1 SEQ ID NO: 204 SEQ ID NO: 205 SEQ ID NO: 203 GCGTAATACGACTC CGTTTGTGACCTGA ATGTTGAATCAGGCTCGATTGAAAGTATTGAAGGTTAGGGAAGATCACGTTCG ACTATAGGATGTTGA CCAAGTC TACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACG ATCAGGCTCGATTG SEQ ID NO: 207 SEQ ID NO: 206 GCGTAATACGACTC ATGTTGAATCAGGC ACTATAGGCGTTTGT TCGATTG GACCTGACCAAGTC LD014_F2 SEQ ID NO: 209 SEQ ID NO: 210 SEQ ID NO: 208 GCGTAATACGACTC CGTTTGTGACCTGA AAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGT ACTATAGGAAGATC CCAAG CACAAACG ACGTTCGTACCGTAC SEQ ID NO: 212 SEQ ID NO: 211 GCGTAATACGACTC AAGATCACGTTCGT ACTATAGGCGTTTGT ACCGTAC GACCTGACCAAG LD014_C1 SEQ ID NO: 213 AATGTTGAATCAGGCTCGATTGAAAGTATTGAAGGTTAGGGAAGATCACGTTC GTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACGATGT TGAATCAGGCTCGATTGAAAGTATTGAAGGTTAGGGAAGATCACGTTCGTACC GTACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACGATGTTGAAT CAGGCTCGATTGAAAGTATTGAAGGTTAGGGAAGATCACGTTCGTACCGTACT AGAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACGC LD014_C2 SEQ ID NO: 214 AAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACTTGGTCAGG TCACAAACGAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGTAAACGACT TGGTCAGGTCACAAACGAAGATCACGTTCGTACCGTACTAGAGGAGGCGCGT AAACGACTTGGTCAGGTCACAAACGAAGATCACGTTCGTACCGTACTAGAGG AGGCGCGTAAACGACTTGGTCAGGTCACAAACGAAGATCACGTTCGTACCGT ACTAGAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACGC LD015 SEQ ID NO: 216 SEQ ID NO: 217 SEQ ID NO: 215 GCGTAATACGACTC CTATCGGCGTGAAG CGCCGGAGAGTTTTTGTCAGCTTCTTCAAAAGCTTTGCGCAAGTTACTCTCAG ACTATAGGCGCCGG CCCCC ACTCGCCAGCGAGTTTGCTCATGATCTCCGGCCCGTTTATCAAGAAGAAGAA AGAGTTTTTGTCAGC SEQ ID NO: 219 CGCCCCAGTCTCATTAGCCACGGCGCGAGCAATCAGGGTCTTACCCGTACCA SEQ ID NO: 218 GCGTAATACGACTC GGGGGACCATACAGCAGTATACCCCTAGGGGGCTTCACGCCGATAG CGCCGGAGAGTTTT ACTATAGGCTATCG TGTCAGC GCGTGAAGCCCCC LD016 SEQ ID NO: 221 SEQ ID NO: 222 SEQ ID NO: 220 GCGTAATACGACTC GGTAATCCTCGAAG GGCATAGTCAATATAGGAATCTGGGTGATGGATCCGTTACGTCCTTCAACACG ACTATAGGGGCATA ATGTTAAGTTCC GCCGGCACGTTCATAGATGGTAGCTAAATCGGTGTACATGTAACCTGGGAAA GTCAATATAGGAATC SEQ ID NO: 224 CCACGACGACCAGGCACCTCTTCTCTGGCAGCAGATACCTCACGCAAAGCTT TGGGTG GCGTAATACGACTC CTGCATACGAAGACATATCTGTCAAGATGACCAAGACGTGCTTCTCACATTGG SEQ ID NO: 223 ACTATAGGGGTAAT TAAGCCAAGAATTCGGCAGCTGTCAAAGCCAGACGAGGTGTAATAATTCTTTC GGCATAGTCAATATA CCTCGAAGATGTTA AATGGTAGGATCGTTGGCCAAATTCAAGAACAGGCAGACATTCTCCATAGAAC GGAATCTGGGTG AGTTCC CGTTCTCTTCGAAATCCTGTTTGAAGAACCTAGCTGTTTCCATGTTAACACCCA TAGCAGCGAAAACAATAGCAAAGTTATCTTCATGATCATCAAGTACAGATTTAC CAGGAATCTTGACTAAACCAGCCTGTCTACAGATCTGGGCAGCAATTTCATTG TGAGGCAGACCAGCTGCAGAGAAAATGGGGATCTTCTGACCACGAGCAATGG AGTTCATCACGTCAATAGCTGTAATACCCGTCTGGATCATTTCCTCAGGATAG ATACGGGACCACGGATTGATTGGTTGACCCTGGATGTCCAAGAAGTCTTCAG CCAAAATTGGGGGACCTTTGTCGATGGGTTTTCCTGATCCATTGAAAACACGT CCCAACATATCTTCAGAAACAGGAGTCCTCAAAATATCTCCTGTGAATTCACAA GCGGTGTTTTTGGCGTCGATTCCTGATGTGCCCTCGAACACTTGAACCACAG CTTTTGACCCACTGACTTCCAGAACTTGTCCCGAACGTATAGTGCCATCAGCC AGTTTGAGTTGTACGATTTCATTGTACTTGGGGAACTTAACATCTTCGAGGATT ACC LD018 SEQ ID NO: 226 SEQ ID NO: 227 SEQ ID NO: 225 GCGTAATACGACTC GTAGAGGCTCCACC GGAGTCGCAGAAATACGAGAGCACCTTCTCGAACAACCAAGCCTCCTTGAGG ACTATAGGGGAGTC GTCAATCGC GTAAAACAAGCCCAGTCTGAGGACTCGGGACACTACACTTTGTTGGCGGAGA GCAGAAATACGAGA SEQ ID NO: 229 ACCCTCAAGGCTGCATAGTGTCATCTGCTTACTTAGCCATAGAACCGGTAACC GCAC GCGTAATACGACTC ACCCAGGAAGGGTTGATCCACGAGTCCACCTTCAAGCAGCAACAGACCGAAA SEQ ID NO: 228 ACTATAGGCTACAG TGGAGCAAATCGACACCAGCAAGACCTTGGCGCCTAACTTCGTCAGGGTTTG GGAGTCGCAGAAAT GCTCCACCGTCAAT CGGGGATAGAGACGTGACCGAGGGCAAGATGACCCGCTTCGACTGTCGCGT ACCACACCAC CGC CACTGGTCGTCCTTATCCAGACGTGACATGGTACATAAACGGTCGACAAGTCA CCGACGACCACAACCACAAGATTTTGGTTAACGAATCCGGAAACCATGCCCT GATGATCACCACCGTGAGCAGGAACGACTCAGGAGTAGTGACCTGCGTCGC CAGGAACAAGACGGGAGAAACCTCCTTCCAGTGCAACCTTAACGTCATCGAA AAGGAACAGGTAGTCGCGCCCAAGTTCGTGGAGAGATTTACCACAGTCAACG TGGCAGAAGGAGAACCAGTGTCTCTGCGCGCTAGAGCTGTTGGCACGCCGG TGCCGCGAATCACTTGGCAGAGGGACGGGGCGCCCCTAGCCAGCGGGCCC GACGTTCGCATCGCGATTGACGGTGGAGCCTCTAC LD027 SEQ ID NO: 231 SEQ ID NO: 232 SEQ ID NO: 230 GCGTAATACGACTC TCGGACAGACTCGT GGGAGCAGACGATCGGTTGGTTAAAATCTGGGACTATCAAAACAAAACGTGT ACTATAGGGGGAGC TCATTTCCC GTCCAAACCTTGGAAGGACACGCCCAAAACGTAACCGCGGTTTGTTTCCACC AGACGATCGGTTGG SEQ ID NO: 234 CTGAACTACCTGTGGCTCTCACAGGCAGCGAAGATGGTACCGTTAGAGTTTG SEQ ID NO: 233 GCGTAATACGACTC GCATACGAATACACACAGATTAGAGAATTGTTTGAATTATGGGTTCGAGAGAG GGGAGCAGACGATC ACTATAGGTCGGAC TGTGGACCATTTGTTGCTTGAAGGGTTCGAATAATGTTTCTCTGGGGTATGAC GGTTCG AGACTCGTTCATTTC GAGGGCAGTATATTAGTGAAAGTTGGAAGAGAAGAACCGGCAGTTAGTATGG CC ATGCCAGTGGCGGTAAAATAATTTGGGCAAGGCACTCGGAATTACAACAAGC TAATTTGAAGGCGCTGCCAGAAGGTGGAGAAATAAGAGATGGGGAGCGTTTA CCTGTCTCTGTAAAAGATATGGGAGCATGTGAAATATACCCTCAAACAATCCA ACATAATCCGAATGGAAGATTCGTTGTAGTATGCGGAGACGGCGAATATATCA TTTACACAGCGATGGCTCTACGGAACAAGGCTTTTGGAAGCGCTCAAGAGTTT GTCTGGGCTCAGGACTCCAGCGAGTATGCCATTCGCGAGTCTGGTTCCACAA TTCGGATATTCAAAAACTTCAAAGAAAGGAAGAACTTCAAGTCGGATTTCAGC GCGGAAGGAATCTACGGGGGTTTTCTCTTGGGGATTAAATCGGTGTCCGGTT TAACGTTTTACGATTGGGAAACTTTGGACTTGGTGAGACGGATTGAAATACAA CCGAGGGCGGTTTATTGGTCTGACAGTGGAAAATTAGTCTGTCTCGCAACGG AGGACAGCTACTTCATCCTTTCTTATGATTCGGAGCAAGTTCAGAAGGCCAGG GAGAACAATCAAGTCGCAGAGGATGGCGTAGAGGCCGCTTTCGATGTGTTGG GGGAAATGAACGAGTCTGTCCGA gfp SEQ ID NO: 236 SEQ ID NO: 237 SEQ ID NO: 235 GCGTAATACGACTC CAATTTGTGTCCAAG AGATACCCAGATCATATGAAACGGCATGACTTTTTCAAGAGTGCCATGCCCGA ACTATAGGAGATAC AATGTTTCC AGGTTATGTACAGGAAAGAACTATATTTTTCAAAGATGACGGGAACTACAAGA CCAGATCATATGAAA SEQ ID NO: 239 CACGTAAGTTTAAACAGTTCGGTACTAACTAACCATACATATTTAAATTTTCAG CGG GCGTAATACGACTC GTGCTGAAGTCAAGTTTGAAGGTGATACCCTTGTTAATAGAATCGAGTTAAAA SEQ ID NO: 238 ACTATAGGCAATTTG GGTATTGATTTTAAAGAAGATGGAAACATTCTTGGACACAAATTG AGATACCCAGATCA TGTCCAAGAATGTTT TATGAAACGG CC -
TABLE 8-PC Target Primers Forward Primers Reverse dsRNA DNA Sequence (sense strand) ID 5′ → 3′ 5′ → 3′ 5′ → 3′ PC001 SEQ ID NO: 474 SEQ ID NO: 475 SEQ ID NO: 473 GCATGGATGTVGGA GCGTAATACGACTC GCATGGATGTTGGACAAATTGGGGGGTGTCTTCGCCCCTCGTCCATCCACCGGG CAAATTGGG ACTATAGGAGATTCA CCTCACAAGTTGCGCGAATCCCTGCCTTTAGTGATTTTCCTTCGTAACAGGCTGAA SEQ ID NO: 476 AATTTGATGTAGTCA GTATGCCCTTACAAACAGTGAAGTCACTAAAATTGTCATGCAAAGGTTGATCAAAG GCGTAATACGACTC AGAATTTTAG TTGATGGTAAAGTGAGGACTGATTCTAATTACCCTGCTGGTTTCATGGATGTCATT ACTATAGGGCATGG SEQ ID NO: 477 ACTATTGAGAAGACTGGTGAATTTTTCCGTCTGATCTATGATGTTAAAGGAAGATT ATGTTGGACAAATTG AGATTCAAATTTGAT TGCTGTGCACCGTATTACAGCTGAAGAGGCAAAATACAAGTTGTGTAAAGTAAGG GG GTAGTCAAGAATTTT AGAGTCCAAACTGGTCCCAAAGGAATCCCATTTTTGGTAACACATGATGGCAGAA AG CCATTCGTTACCCTGACCCCAACATCAAAGTGAATGACACAATTCAAATGGAAATT GCTACATCTAAAATTCTTGACTACATCAAATTTGAATCT PC003 SEQ ID NO: 479 SEQ ID NO: 480 SEQ ID NO: 478 CCCTAGACGTCCCT GCGTAATACGACTC CCCTAGACGTCCCTATGAAAAGGCCCGTCTGGATCAGGAATTGAAAATTATCGGC ATGAAAAGGCCC ACTATAGGTTGACA GCCTTTGGTTTACGAAACAAACGTGAAGTGTGGAGAGTAAAGTACACTTTGGCTA SED ID NO: 481 CGGCCAGGTCGGC AAATCCGTAAAGCTGCTCGTGAACTGCTCACCCTAGAAGAAAAAGAGCCTAAAAG GCGTAATACGACTC CACC ATTGTTTGAAGGTAATGCACTTCTACGTCGTTTGGTGCGAATTGGTGTTCTGGATG ACTATAGGCCCTAG SEQ ID NO: 482 AGAACAGGATGAAGCTTGATTATGTTTTGGGTCTGAAAATTGAAGATTTCTTGGAA ACGTCCCTATGAAA TTGACACGGCCAGG AGAAGGCTCCAAACTCAGGTGTTCAAATCTGGTCTGGCAAAGTCAATTCATCATG AGGCCC TCGGCCACC CTAGAGTACTGATTAGGCAGAGACACATCCGGGTGCGCAAGCAGGTGGTGAACA TCCCCTCGTTCATCGTGCGGCTGGACTCGCAGAAGCACATCGACTTCTCCCTGAA GTCGCCCTTCGGGGGTGGCCGACCTGGCCGTGTCAA PC005 SEQ ID NO: 484 SEQ ID NO: 485 SEQ ID NO: 483 ATCCTAATGAAATCA GCGTAATACGACTC ATCCTAATGAAATCAACGAAATCGCCAACACCAACTCAAGACAAAACATCCGTAAG ACGAAATCGCC ACTATAGGTTCCCTA CTCATCAAGGATGGTCTTATCATCAAGAAGCCAGTGGCAGTACACTCTAGGGCCC SEQ ID NO: 486 CGTTCCCTGGCCTG GTGTACGCAAGAACACTGAAGCTAGAAGGAAGGGAAGGCATTGTGGATTTGGAAA GCGTAATACGACTC CTTC GAGGAAGGGTACGGCAAATGCCCGTATGCCTCAAAAGGAACTGTGGGTGCAGCG ACTATAGGATCCTAA SEQ ID NO: 487 CATGCGCGTCCTCAGGCGCCTCCTCAAAAAGTACAGGGAGGCCAAGAAAATCGA TGAAATCAACGAAAT TTCCCTACGTTCCCT CCGCCATCTTTACCACGCCCTGTACATGAAAGCGAAGGGTAACGTGTTCAGGAAC CGCC GGCCTGCTTC AAGAGGGTCCTTATGGAGTACATCCACAAGAAGAAGGCAGAGAAGGCCAGGGCC AAGATGCTGTCTGACCAGGCTAACGCCAGGAGATTGAAGGTGAAGCAGGCCAGG GAACGTAGGGAA PC010 SEQ ID NO: 489 SEQ ID NO: 490 SEQ ID NO: 488 GCTCAGGCTATTAC GCGTAATACGACTC GCTCAGCCTATTACCGCCCAACGCGTTGATTGGATTGATCACGTTCGGAAAAATG CGCCCAACGC ACTATAGGATGGAA GTGCAAGTCCACGAACTGGGTACCGAAGGCTGCAGCAAGTCGTACGTGTTCTGT SEQ ID NO: 491 AATGAGTATCTGGA GGAACGAAAGATCTCACCGCCAAGCAAGTCCAGGAGATGTTGGGCATTGGAAAA GCGTAATACGACTC AGAAAG GGGTCACCAAATCCCCAACAACAGCCAGGGCAACCTGGGCGGCCAGGGCAGAAT ACTATAGGGCTCAG SEQ ID NO: 492 CCCCAAGCTGCCCCTGTACCACCGGGGAGCAGATTCTTGCAGCCCGTGTCAAAA CCTATTACCGCCCA ATGGAAAATGAGTAT TGCGACATGAACTTGACAGATCTGATCGGGGAGTTGCAGAAAGACCCTTGGCCC ACGC CTGGAAGAAAG GTACATCAGGGCAAAAGACCTCTTAGATCCACAGGCGCAGCATTGTCCATCGCTG TCGGCCTCTTAGAATGCACCTATCCGAATACGGGTGGCAGAATCATGATATTCTTA GGAGGACCATGCTCTCAGGGTCCCGGCCAGGTGTTGAACGACGATTTGAAGCAG CCCATCAGGTCCCATCATGACATACACAAAGACAATGCCAAGTACATGAAGAAGG CTATCAAACATTACGATCACTTGGCAATGCGAGCTGCCACCAACAGCCATTGCAT CGACATTTACTCCTGCGCCCTGGATCAGACGGGACTGATGGAGATGAAGCAGTG CTGCAATTCCACCGGAGGGCACATGGTCATGGGCGATTCCTTCAATTCCTCTCTA TTCAAACAAACCTTCCAGCGAGTGTTCTCAAAAGACCCGAAGAACGACCTCAAGA TGGCGTTCAACGCCACCTTGGAGGTGAAGTGTTCCAGGGAGTTAAAAGTCCAAG GGGGCATCGGCTCGTGCGTGTCCTTGAACGTTAAAAGCCCTCTGGTTTCCGATAC GGAACTAGGCATGGGGAATACTGTGCAGTGGAAACTTTGCACGTTGGCGCCGAG CTCTACTGTGGCGCTGTTCTTCGAGGTGGTTAACCAGCATTCGGCGCCCATACCA CAGGGAGGCAGGGGCTGCATCCAGCTCATCACCCAGTATCAGCACGCGAGCGG GCAAAGGAGGATCAGAGTGACCACGATTGCTAGAAATTGGGCGGACGCTACTGC CAACATCCACCACATTAGCGCTGGCTTCGACCAAGAAGCGGCGGCAGTTGTGAT GGCCCGAATGGCCGGTTACAAGGCGGAATCGGACGAGACTCCCGACGTGCTCA GATGGGTGGACAGGATGTTGATCAGGCTGTGCCAGAAGTTCGGAGAGTACAATA AAGACGATCCGAATTCGTTCAGGTTGGGGGAGAACTTCAGTCTGTATCCGCAGTT CATGTACCATTTGAGACGGTCGCAGTTTCTGCAGGTGTTCAATAATTCTCCTGATG AAACGTCGTTTTATAGGCACATGCTGATGCGTGAGGATTTGACTCAGTCTTTGATC ATGATCCAGCCGATTTTGTACAGTTACAGCTTCAACGGGCCGCCCGAGCCTGTGT TGTTGGACACAAGCTCTATTCAGCCGGATAGAATCCTGCTCATGGACACTTTCTTC CAGATACTCATTTTCCAT PC014 SEQ ID NO: 494 SEQ ID NO: 495 SEQ ID NO: 493 CTGATGTTCAAAAAC GCGTAATACGACTC CTGATGTTCAAAAACAAATCAAACACATGATGGCTTTCATTGAACAAGAAGCCAAT AAATCAAACACATG ACTATAGGTGAGCG GAGAAAGCAGAAGAAATTGATGCCAAGGCAGAGGAGGAATTCAACATTGAAAAAG SEQ ID NO: 496 ATCAGATCCAACCTA GGCGTTTGGTCCAGCAACAGAGACTCAAGATCATGGAGTACTACGAGAAAAAGGA GCGTAATACGACTC GCCTCC GAAGCAAGTCGAACTTCAAAAGAAAATTCAGTCCTCTAATATGTTGAATCAGGCTC ACTATAGGCTGATG SEQ ID NO: 497 GTTTGAAGGTGCTGAAAGTGAGAGAGGACCATGTCAGAGCAGTCCTGGAGGATG TTCAAAAACAAATCA TGAGCGATCAGATC CTCGTAAAAGTCTTGGTGAAGTAACCAAAGACCAAGGAAAATACTCCCAAATTTTG AACACATG CAACCTAGCCTCC GAGAGCCTAATCCTACAAGGACTGTTCCAGCTGTTCGAGAAGGAGGTGACGGTC CGCGTGAGACCGCAAGACAGGGACCTGGTCAGGTCCATCCTGCCCAACGTCGCT GCCAAATACAAGGACGCCACCGGCAAAGACATCCTACTCAAGGTGGACGATGAG TCGCACCTGTCTCAGGAGATCACCGGAGGCGTCGATTTGCTCGCTCAGAAGAAC AAGATCAAGATCAGCAACACGATGGAGGCTAGGTTGGATCTGATCGCTCA PC016 SEQ ID NO: 499 SEQ ID NO: 500 SEQ ID NO: 498 ACTGGTCATTCTTGA GCGTAATACGACTC ACTGGTCATTCTTGAGGATGTCAAGTTTCCAAAATTCAATGAAATTGTCCAGCTCA GGATGTCAAGT ACTATAGGTTGGGC AATTGGCAGATGGAACTCTACGATCTGGACAAGTTTTGGAAGTCAGTGGATCAAA SEQ ID NO: 501 ATAGTCAAGATGGG GGCAGTTGTTCAGGTATTTGAAGGCACATCAGGTATTGATGCTAAGAACACGGTG GCGTAATACGACTC GATCTGC TGTGAGTTCACTGGAGATATTCTAAGAACTCCAGTATCAGAAGATATGCTGGGAC ACTATAGGACTGGT SEQ ID NO: 502 GTGTCTTCAATGGATCAGGAAAACCCATTGATAAAGGTCCCCCGATCCTGGCTGA CATTCTTGAGGATGT TTGGGCATAGTCAA GGACTACCTCGACATCCAAGGACAGCCGATCAACCCGTGGTCGCGTATTTATCCC CAAGT GATGGGGATCTGC GAGGAAATGATCCAGACTGGGATCACGGCCATCGACGTGATGAACTCTATCGCCA GAGGGCAGAAGATTCCGATCTTCTCCGCCGCTGGGCTGCCCCACAATGAGATTG CAGCCCAGATTTGTAGGCAGGCTGGCTTGGTCAAAGTACCTGGCAAGTCTGTGCT GGATGACCATGAAGACAACTTTGCTATTGTGTTTGCTGCTATGGGTGTCAACATG GAAACTGCCAGGTTCTTCAAGCAGGACTTCGAAGAGAACGGCTCGATGGAGAAC GTGTGTCTGTTCTTGAACTTGGCCAACGATCCGACCATCGAGCGCATCATCACGC CGCGTTTGGCTCTGACGGCCGCCGAATTCTTGGCCTACCAGTGCGAGAAGCACG TGCTGGTCATCTTGACCGACATGTCGTCGTACGCGGAGGCGTTGCGTGAGGTGT CTGCCGCTCGAGAAGAAGTGCCCGGCCGTAGGGGTTTCCCCGGTTACATGTACA CCGATCTGGCCACCATTTACGAGCGCGCCGGTCGTGTGGAGGGCCGCAACGGC TCCATCACGCAGATCCCCATCTTGACTATGCCCAA PC027 SEQ ID NO: 504 SEQ ID NO: 505 SEQ ID NO: 503 CAAGCTAACTTGAAA GCGTAATACGACTC CAAGCTAACTTGAAAGTACTACCAGAAGGAGCTGAAATCAGAGATGGAGAACGTT GTACTACCAGAAGG ACTATAGGTTTTGGA TGCCAGTCACAGTAAAGGACATGGGAGCATGCGAGATTTACCCACAAACAATCCA SEQ ID NO: 506 ATTGAAGGCAATACT ACACAACCCCAATGGGCGGTTTGTAGTGGTTTGTGGTGATGGAGAATACATAATA GCGTAATACGACTC CGATCAG TACACGGCTATGGCCCTTCGTAACAAAGCATTTGGTAGCGCTCAAGAATTTGTATG ACTATAGGCAAGCT SEQ ID NO: 507 GGCACAGGACTCCAGTGAATATGCCATCCGCGAATCCGGATCCACCATTCGAATC AACTTGAAAGTACTA TTTTGGAATTGAAGG TTCAAGAATTTCAAAGAAAAAAAGAATTTCAAGTCCGACTTTGGTGCCGAAGGAAT CCAGAAGG CAATACTCGATCAG CTATGGTGGTTTTCTCTTGGGTGTGAAATCAGTTTCTGGCTTAGCTTTCTATGACT GGGAAACGCTTGAGTTAGTAAGGCGCATTGAAATACAGCCTAGAGCTATCTACTG GTCAGATAGTGGCAAGTTGGTATGCCTTGCTACCGAAGATAGCTATTTCATATTGT CCTATGACTCTGACCAAGTCCAGAAAGCTAGAGATAACAACCAAGTTGCTGAAGA TGGAGTGGAGGCTGCCTTTGATGTCCTAGGTGAAATAAATGAATCCGTAAGAACA GGTCTTTGGGTAGGAGACTGCTTCATTTACACAAACGCAGTCAACCGTATCAACTA CTTTGTGGGTGGTGAATTGGTAACTATTGCACATCTGGACCGTCCTCTATATGTCC TGGGCTATGTACCTAGAGATGACAGGTTATACTTGGTTGATAAAGAGTTAGGAGTA GTCAGCTATCNAATTGCTATTATCTGTACTCGAATATCAGACTGCAGTCATGCGAC GAGACTTCCCAACGGCTGATCGAGTATTGCCTTCAATTCCAAAA -
TABLE 8-EV Target Primers Forward Primers Reverse dsRNA DNA Sequence (sense strand) ID 5′ → 3′ 5′ → 3′ 5′ → 3′ EV005 SEQ ID NO: 577 SEQ ID NO: 578 SEQ ID NO: 576 GACAAAACATCCGC GCGTAATACGACTC GACAAAACATCCGCAAACTGATTAAAGATGGTCTTATTATTAAAAAGCCTGTCGCG AAACTG ACTATAGGCTCCTT GTGCATTCTCGTGCACGTGTACGCAAAAATACTGAAGCCCGCAGGAAAGGTCGTC SEQ ID NO: 579 GCATCAGCTTGATC ATTGTGGATTTGGTAAAAGGAAAGGAACTGCAAATGCTAGGATGCCCAGAAAGGA GCGTAATACGACTC SEQ ID NO: 580 ATTATGGATTCAACGTATGAGAGTTCTCAGAAGGTTATTGAAGAAATATAGGGAAG ACTATAGGGACAAA CTCCTTGCATCAGC CTAAGAAAATTGATAGGCATTTATACCATGCTTTATATATGAAAGCTAAGGGAAAT ACATCCGCAAACTG TTGATC GTATTCAAGAATAAGAGAGTAATGATGGACTATATCCATAAAAAGAAGGCGGAGAA AGCACGTACAAAGATGCTCAATGATCAAGCTGATGCAAGGAG EV009 SEQ ID NO: 582 SEQ ID NO: 583 SEQ ID NO: 581 CAGGACTGAAGAAT GCGTAATACGACTC CAGGACTGAAGAATCTATAATAGGAACAAACCCAGGAATGGGTTTTAGGCCAATG CTATAATAGG ACTATAGGCTGGAA CCCGACAACAACGAAGAAAGTACCCTGATTTGGTTACAGGGTTCTAATAAAACAAA SEQ ID NO: 584 AGATGGGTAATACTTC CTACGAAAAATGGAAAATGAATCTCCTCTCATATTTAGACAAGTATTACACTCCCG GCGTAATACGACTC SEQ ID NO: 585 GAAAAATAGAAAAGGGAAATATTCCAGTAAAGCGCTGTTCATACGGAGAAAAATTG ACTATAGGCAGGAC CTGGAAAGATGGGT ATTAGGGGACAAGTATGTGATGTAGATGTGAGGAAATGGGAGCCGTGCACCCCG TGAAGAATCTATAAT AATACTTC GAAAATCATTTTGATTACCTCAGAAATGCGCCTTGTATATTTCTGAAGCTGAACAG AGG GATATATGGATGGGAACCGGAGTACTACAACGATCCAAATGATCTTCCAGATGAT ATGCCGCAGCAGTTGAAGGACCATATACGTTATAATATCACCAATCCAGTGGAGA GAAATACCGTCTGGGTAACATGCGCAGGTGAAAATCCGGCAGACGTGGAGTACTT GGGCCCTGTGAAGTATTACCCATCTTTCCAG EV010 SEQ ID NO: 587 SEQ ID NO: 588 SEQ ID NO: 586 CCAATGGAGACTTG GCGTAATACGACTC CCAATGGAGACTTGAAGATGTCCTTCAACGCCATATTAGAAGTGAAGTGTTCTAGA AAGATGTC ACTATAGGCTTCCCT GAACTTAAAGTACAAGGAGGTATAGGTCCTTGTGTCTCTCTAAATGTCAAAAATCC SEQ ID NO: 589 CATCAACATGTGC TCTTGTTTCTGATTTAGAAATAGGCATGGGTAACACAGTTCAGTGGAAACTGTGTA GCGTAATACGACTC SEQ ID NO: 590 GCTTAAGTCCAAGCACTACGGTTGCCTTATTTTTTCGAAGTTGTTAATCAGCATGCA ACTATAGGCCAATG CTTCCCTCATCAACA GCACCCATTCCTCAAGGGGGACGTGGATGCATTCAGTTTATTACTCAATATCAGC GAGACTTGAAGATG TGTGC ATTCAAGTGGTCAGAAAAAAATAAGGGTAACTACAATAGCAAGAAATTGGGCGGA TC TGCCACTGCAAATATTCACCATATTAGCGCTGGCTTTGACGAACAAACTGCGGCT GTTTTAATGGCGAGGATCGCTGTATATAGAGCAGAAACTGATGAGAGTTCAGATG TTCTCAGATGGGTTGACAGAATGTTGATACGATTGTGTCAGAAATTTGGAGAATAT AACAAAGATGACACCAACAGCTTCAGGCTCAGTGAAAACTTCAGCTTATATCCACA GTTTATGTATCATCTACGTCGTTCCCAATTTCTACAAGTGTTCAATAATTCACCAGA TGAAACTTCATTCTATAGGCACATGTTGATGAGGGAAG EV015 SEQ ID NO: 592 SEQ ID NO: 593 SEQ ID NO: 591 GTTAAGCCTCCAAG GCGTAATACGACTC GTTAAGCCTCCAAGGGGTATTCTCCTTTACGGGCCTCCCGGCACGGGGAAAACG GGGTATTC ACTATAGGGAGCAC CTGATCGCCAGGGCCGTTGCCAACGAAACTGGTGCGTTCTTCTTCCTCATCAATG SEQ ID NO: 594 AAAGAAGCCAAGTC GGCCCGAGATTATGAGCAAGCTGGCCGGAGAATCCGAGAGCAATCTTAGAAAGG GCGTAATACGACTC AG CTTTTGAAGAGGCTGATAAAAACTCTCCTGCAATCATCTTTATCGACGAATTAGAC ACTATAGGGTTAAG SEQ ID NO: 595 GCAATCGCTCCCAAGCGCGAGAAGACTCATGGTGAGGTAGAGAGACGCATCGTC CCTCCAAGGGGTAT GAGCACAAAGAAGC TCCCAACTGTTGACTTTGATGGACGGCATGAAGAAAAGTTCCCATGTGATCGTGA TC CAAGTCAG TGGCGGCCACGAACAGGCCCAATTCCATCGACCCTGCACTCAGACGTTTCGGCC GATTCGACAGAGAGATCGACATCGGTATCCCCGACGCTACTGGAAGATTAGAAGT ACTCAGAATACACACCAAAAACATGAAATTGGCTGACGATGTAGATTTGGAACAGA TTGCCGCAGAGACTCACGGTCATGTAGGTGCTGACTTGGCTTCTTTGTGCTC EV016 SEQ ID NO: 597 SEQ ID NO: 598 SEQ ID NO: 596 GGTGATCCTTGATA GCGTAATACGACTC GGTGATCCTTGATAGTGTTAAGTTTCCAAAATTTAACGAAATTGTACAGCTCAAGTT GTGTTAAG ACTATAGGCCTCAG ATCAGATGGAACAGTTAGGTCTGGACAAGTTTTGGAAGTCAGTGGACAGAAGGCG SEQ ID NO: 599 CATAAGATGACATG GTTGTCCAAGTTTTTGAAGGCACCTCCGGAATTGATGCTAAAAACACTTTATGTGA GCGTAATACGACTC SEQ ID NO: 600 ATTTACAGGAGATATCTTAAGAACTCCAGTGTCTGAAGATATGTTGGGTCGTGTGT ACTATAGGGGTGAT CCTCAGCATAAGAT TTAATGGATCTGGAAAGCCTATCGATAAAGGGCCGCCAATCTTAGCTGAAGATTTT CCTTGATAGTGTTAAG GACATG CTTGACATTCAAGGTCAACCTATAAATCCTTGGTCTCGTATCTATCCAGAAGAAAT GATCCAGACTGGTATTTCTGCGATTGATGTGATGAATTCCATTGCCAGAGGACAAA AGATTCCAATTTTCTCTGCAGCTGGTTTACCCCACAATGAAATCGCTGCTCAAATC TGTAGACAAGCTGGTCTTGTCAAAATCCCAGGGAAATCTGTCTTAGATGATCATGA AGACAACTTTGCTATCGTTTTCGCCGCTATGGGTGTCAATATGGAAACAGCCAGAT TCTTCAAGCAAGATTTTGAAGAGAATGGCTCTATGGAAAATGTGTGCCTATTTTTG AACTTGGCCAATGATCCTACCATTGAAAGAATTATAACACCCCGTTTGACTTTAAC AGCGGCTGAATTTATGGCATATCAATGTGAGAAGCATGTGTTAGTCATATTGACTG ACATGTCATCTTATGCTGAGG -
TABLE 8-AG Target Primers Forward Primers Reverse dsRNA DNA Sequence (sense strand) ID 5′ → 3′ 5′ → 3′ 5′ → 3′ AG001 SEQ ID NO: 769 SEQ ID NO: 770 SEQ ID NO: 768 GCGTAATACGACTC GATTTCCAGTTGGAT GCATGGATGTTGGACAAATTGGGGGGTGTGTTCGCCCCCAGGCCCTCCACCGGG ACTATAGGGCATGG GGTGTCG CCACACAAGCTCAGGGAGTCCCTTCCATTAGTGATTTTCTTGCGTAACAGGTTGAA ATGTTGGACAAATTGG SEQ ID NO: 772 GTACGCCCTGACAAACTGTGAGGTGACCAAGATCGTTATGCAGAGACTTATTAAG SEQ ID NO: 771 GCGTAATACGACTC GTCGACGGCAAAGTCAGGACTGATCCTAACTATCCTGCTGGATTCATGGATGTGA GCATGGATGTTGGA ACTATAGGGATTTCC TCACCATTGAAAAAACTGGTGAATTCTTCCGTTTGATCTATGATGTTAAGGGAAGA CAAATTGG AGTTGGATGGTGTCG TTCACTATTCACAGGATCACTGCTGAAGAAGCAAAATACAAATTGTGCAAAGTCCG CAAGGTGCAAACCGGACCAAAAGGTATTCCATTCTTGGTCACCCACGATGGTAGG ACCATTAGGTACCCTGACCCAATGATCAAGGTAAACGACACCATCCAACTGGAAA TC AG005 SEQ ID NO: 774 SEQ ID NO: 775 SEQ ID NO: 773 GCGTAATACGACTC CCTTTTGCCTTCTGG CAACACCAACTCGAGGCAAAACATCCGTAAATTGATCAAGGATGGTTTGATCATTA ACTATAGGCAACAC CGTTAG AGAAACCGGTGGCAGTGCACTCTAGGGCTCGTGTCCGTAAAAACACAGAAGCTC CAACTCGAGGCAAA SEQ ID NO: 777 GCAGGAAGGGAAGGCACTGCGGTTTCGGTAAGAGGAAAGGTACAGCGAACGCTC AC GCGTAATACGACTC GTATGCCTCAAAAGGAACTATGGATCCAAAGGATGCGTGTCTTGAGGCGTCTCCT SEQ ID NO: 776 ACTATAGGCCTTTTG GAAAAAATACAGGGAAGCCAAAAAGATCGACAGGCATCTGTACCACGCCCTGTAC CAACACCAACTCGA CCTTCTGGCGTTAG ATGAAGGCCAAGGGTAACGTGTTCAAGAACAAGAGAGTGTTGATGGAATACATCC GGCAAAAC ACAAGAAGAAGGCTGAGAAGGCCCGTGCCAAGATGTTGGCCGACCAAGCTAACG CCAGAAGGCAAAAGG AG010 SEQ ID NO: 779 SEQ ID NO: 780 SEQ ID NO: 778 GCGTAATACGACTC GAAGGATGCCTGGT CAAACTTTCCAAAGGGTGTTCGCGAAGGACCAGAATGGACATTTGAAGATGGCTT ACTATAGGCAAACTT CATCTTTG TCAACGGTACTTTGGAGGTGAAGTGCTCTAGGGAATTAAAAGTTCAAGGCGGTAT TCCAAAGGGTGTTCG SEQ ID NO: 782 TGGCTCATGCGTGTCGCTAAATGTAAAAAGTCCTTTGGTAGCGGACACGGAAATA SEQ ID NO: 781 GCGTAATACGACTC GGCATGGGAAACACCGTGCAATGGAAGATGTGCACCTTCAACCCTAGCACGACG CAAACTTTCCAAAG ACTATAGGGAAGGA ATGGCGCTGTTTTTCGAGGTGGTCAATCAGCATTCGGCCCCCATTCCTCAAGGTG GGTGTTCG TGCCTGGTCATCTTTG GTAGAGGATGTATACAGTTTATTACACAATATCAGCACTCGAGTGGCCAAAGGAG GATAAGGGTGACGACGATAGCGAGAAATTGGGCGGACGCATCGGCGAATATTCA CCACATCAGCGCGGGTTTCGATCAGGAACGTGCCGCGGTGATTATGGCCCGGAT GGCTGTTTATAGAGCGGAGACCGATGAGAGTCCCGATGTTTTAAGATGGGTCGAT CGGATGCTGATTCGTTTGTGTCAAAAGTTTGGAGAATATAACAAAGATGACCAGG CATCCTTC AG014 SEQ ID NO: 784 SEQ ID NO: 785 SEQ ID NO: 783 GCGTAATACGACTC CAACTGTTGCGAAA GAAAAGGCCGAGGAAATTGATGCCAAGGCGGAAGAAGAATTTAACATTGAAAAGG ACTATAGGGAAAAG TCAGGTCC GCCGCCTTGTGCAACAACAAAGATTGAAGATCATGGAATACTATGAGAAGAAGGA GCCGAGGAAATTGA SEQ ID NO: 787 GAAGCAAGTCGAACTACAAAAGAAAATTCAATCCTCCAACATGCTGAACCAAGCC TG GCGTAATACGACTC CGTCTTAAGGTTCTGAAAGTCCGCGAAGATCATGTTAGAGCTGTATTGGATGAGG SEQ ID NO: 786 ACTATAGGCAACTG CTCGCAAGAAGCTTGGTGAAGTCACCAGGGATCAAGGCAAATATGCCCAGATTCT GAAAAGGCCGAGGA TTGCGAAATCAGGT GGAATCTTTGATCCTTCAGGGACTCTACCAGCTTTTCGAGGCAAACGTGACCGTA AATTGATG CC CGCGTCCGCCCACAAGACAGAACCTTAGTCCAATCAGTGCTGCCAACCATCGCAA CCAAATACCGTGACGTCACCGGCCGAGATGTACACCTGTCCATCGATGACGAAAC TCAACTGTCCGAATCCGTAACCGGCGGAATCGAACTTTTGTGCAAACAAAACAAA ATTAAGGTCTGCAACACCCTGGAGGCACGTTTGGACCTGATTTCGCAACAGTTG AG016 SEQ ID NO: 789 SEQ ID NO: 790 SEQ ID NO: 788 GCGTAATACGACTC CGACCGGCTCTTTC GTGTTCAACGGATCAGGAAAACCCATTGACAAAGGTCCTCCAATCTTAGCCGAAG ACTATAGGGTGTTC GTAAATG ATTTCTTGGACATCCAAGGTCAACCCATCAACCCATGGTCGCGTATCTACCCGGA AACGGATCAGGAAA SEQ ID NO: 792 AGAAATGATCCAGACCGGTATCTCCGCCATCGACGTGATGAACTCCATCGCGCGT ACC GCGTAATACGACTC GGGCAAAAAATCCCCATTTTCTCCGCGGCCGGTTTACCGCACAACGAAATCGCCG SEQ ID NO: 791 ACTATAGGCGACCG CCCAAATCTGTAGACAGGCCGGTTTAGTCAAACTGCCGGGCAAATCGGTAATCGA GTGTTCAACGGATC GCTCTTTCGTAAATG CGATCACGAGGACAATTTCGCCATCGTGTTCGCCGCCATGGGTGTCAACATGGAA AGGAAAACC ACCGCCCGTTTCTTCAAGCAGGACTTCGAAGAAAACGGTTCCATGGAGAACGTGT GTCTCTTCTTGAATTTGGCCAACGATCCCACCATCGAGAGAATCATCACGCCCCG TTTGGCTCTGACCGCCGCCGAATTTTTGGCTTATCAATGCGAGAAACACGTGCTG GTTATCTTAACTGATATGTCTTCTTACGCCGAGGCTTTGCGTGAAGTATCCGCCGC CAGAGAAGAAGTACCCGGACGTCGTGGGTTCCCCGGTTACATGTACACCGATTTG GCCACCATTTACGAAAGAGCCGGTCG -
TABLE 8-TC Target Primers Forward Primers Reverse dsRNA DNA Sequence (sense strand) ID 5′ → 3′ 5′ → 3′ 5′ → 3′ TC001 SEQ ID NO: 864 SEQ ID NO: 865 SEQ ID NO: 863 GCGTAATACGACTC GGTGTGCCCATTTG CTGCGAAACAGGCTGAAGTATGCCTTGACCAACTCAGAAGTGACGAAGATTGTTA ACTATAGGCTGCGA CATCCT TGCAAAGATTGATTAAAGTTGACGGAAAAGTTAGGACAGACCCCAACTACCCCGC AACAGGCTGAAGTA SEQ ID NO: 867 GGGTTTCATGGATGTTGTGACTATTGAGAAAACTGGGGAATTCTTCCGCTTGATTT TGC GCGTAATACGACTC ATGATGTTAAGGGAAGGTTCACAATCCATCGCATTACTGGAGAAGAGGCCAAATA SEQ ID NO: 866 ACTATAGGGGTGTG TAAATTGTGCAAAGTGAAGAAAGTACAGACAGGCCCCAAGGGCATTCCCTTCTTG CTGCGAAACAGGCT CCCATTTGCATCCT GTGACCCGCGACGGACGCACTATCAGATACCCAGACCCCATGATCAAAGTGAAT GAAGTATGC GACACCATTCAATTGGAGATTGCCACTTCGAAAATTCTTGATTTTATCAAATTTGAG TCCGGTAATTTGTGTATGATTACTGGAGGTCGTAACTTGGGGCGTGTCGGTACAG TGGTGAGCCGAGAACGTCACCCAGGTTCCTTCGACATCGTTCATATTAAGGATGC AAATGGGCACACC TC002 SEQ ID NO: 869 SEQ ID NO: 870 SEQ ID NO: 868 GCGTAATACGACTC CTTTGTGAACAGCG CATCCATGTTGAGGTGGGCATTTTTGAGGGCGTCCGCTGCGTTTTTCATCGTTTT ACTATAGGCATCCAT GCCATC GAGTACGGCTGTGTTGGTGTTGGCCCCCTCGAGGGCCTCCCGCTGCATCTCGAT GTTGAGGTGGGCA SEQ ID NO: 872 GGTGCTGAGGGTGCCATCGATCTGCTGGAGCTGCTTTTCGTAGCGTTTCTTCCTC SEQ ID NO: 871 GCGTAATACGACTC TTGATGGCCTGGATGGCCGCTGTTCACAAAG CATCCATGTTGAGG ACTATAGGCTTTGTG TGGGCA AACAGCGGCCATC TC010 SEQ ID NO: 874 SEQ ID NO: 875 SEQ ID NO: 873 GCGTAATACGACTC ATGTCCTGGTACTT ATGTCCTGGTACTTGAGGTTCCTCCATTGGGCGATTGTCTCACCGTGGAAAATCA ACTATAGGATGTAC GAGGTTCCTCC AAATTTGGAAAAATGTGTCCATGAGAAGGATCCGATCGGGTTGAATGGAACTAGT CATTTGCGCCGCTC SEQ ID NO: 877 GTCGAGGAGGACGGGTTCAGGGGGGCCGTTGAAACTATAACTGTACAAAATCGG SEQ ID NO: 876 GCGTAATACGACTC CTGGATCATAATGAGACTTTGGGTGAGGTCCTCCCGCATCAGCATGTGGCGGTAG ATGTACCATTTGCG ACTATAGGATGTCCT AACGAGGTCTCGTCTGGGGAGTTGTTGAAAACTTGGAGGAATTGGGAGCGGCGC CCGCTC GGTACTTGAGGTTC AAATGGTACAT CTCC TC014 SEQ ID NO: 879 SEQ ID NO: 880 SEQ ID NO: 878 GCGTAATACGACTC ACAAGGCCGTACGA CAACAGCGCTTGAAGATCATGGAATATTACGAGAAGAAGGAGAAACCGGTGGAAT ACTATAGGCAACAG ATTTCTGG TGCAGAAGAAAATTCAGTCGTCAAACATGCTGAACCAAGCCCGTTTGAAAGTATTA CGCTTGAAGATCAT SEQ ID NO: 882 AAAGTGCGTGAAGACCACGTCCACAATGTGCTGGATGACGCCCGCAAACGTCTG GG GCGTAATACGACTC GGCGAAATCACCAATGACCAGGCGAGATATTCACAACTTTTGGAGTCTCTTATCCT SEQ ID NO: 881 ACTATAGGACAAGG CCAGAGTCTCTACCAGTACTTGGGAATCAGTGATGAGTTGTTTGAGAACAATATAG CAACAGCGCTTGAA CCGTACGAATTTCT TGGTGAGAGTCAGGCAACAGGACAGGAGTATAATCCAGGGCATTCTCCCAGTTGT GATCATGG GG TGCGACGAAATACAGGGACGCCACTGGTAAAGACGTTCATCTTAAAATCGACGAT GAGAGCCACTTGCCATCCGAAACCACCGGAGGAGTGGTTTTGTATGCGCAAAAG GGTAAAATCAAGATTGACAACACCTTGGAGGCTCGTTTGGATTTAATTGCACAGCA ACTTGTGCCAGAAATTCGTACGGCCTTGT TC015 SEQ ID NO: 884 SEQ ID NO: 885 SEQ ID NO: 883 GCGTAATACGACTC TCGGATTCGCCGGCC CGATACAGTGTTGCTGAAAGGGAAGCGGCGGAAAGAGACCGTCTGCATTGTGCT ACTATAGGCGATAC TAATTTAC GGCCGACGAAAACTGCCCCGATGAGAAGATCCGGATGAACAGGATCGTCAGGAA AGTGTTGCTGAAAG SEQ ID NO: 887 TAATCTACGGGTTAGGCTCTCTGACGTCGTCTGGATCCAGCCCTGTCCCGACGTC GGAAG GCGTAATACGACTC AAATACGGGAAGAGGATCCACGTTTTGCCCATCGATGACACGGTCGAAGGGCTC SEQ ID NO: 886 ACTATAGGTCGGAT GTCGGAAATCTCTTCGAGGTGTACTTAAAACCATACTTCCTCGAAGCTTATCGACC CGATACAGTGTTGC TCGCCGGCTAATTT AATCCACAAAGGCGACGTTTTCATCGTCCGTGGTGGCATGCGAGCCGTTGAATTC TGAAAGGGAAG AC AAAGTGGTGGAAACGGAACCGTCACCATATTGTATCGTCGCCCCCGATACCGTCA TCCATTGTGACGGCGATCCGATCAAACGAGAAGAAGAGGAGGAAGCCTTGAACG CCGTCGGCTACGACGATATCGGCGGTTGTCGCAAACAACTCGCACAAATCAAAGA AATGGTCGAATTACCTCTACGCCACCCGTCGCTCTTCAAGGCCATTGGCGTGAAA CCACCACGTGGTATCCTCTTGTACGGACCTCCAGGTACCGGTAAAACTTTAATCG CACGTGCAGTGGCCAACGAAACCGGTGCTTTCTTCTTCTTAATCAACGGTCCCGA AATTATGAGTAAATTAGCCGGCGAATCCGA -
TABLE 8-MP Target Primers Forward Primers Reverse dsRNA DNA Sequence (sense strand) ID 5′ → 3′ 5′ → 3′ 5′ → 3′ MP001 SEQ ID NO: 1042 SEQ ID NO: 1043 SEQ ID NO: 1041 GCGTAATACGACTC CAATACCAACACGC GTTTAAACGCACCCAAAGCATGGATGTTGGACAAATCGGGGGGTGTCTTCGCTCC ACTATAGGGTTTAAA CCTAAATTGC ACGTCCAAGCACCGGTCCACACAAACTTCGTGAATCACTACCGTTATTGATCTTCT CGCACCCAAAGCAT SEQ ID NO: 1045 TGCGTAATCGTTTGAAGTATGCACTTACTGGTGCCGAAGTCACCAAGATTGTCATG GG GCGTAATACGACTC CAAAGATTAATCAAGGTTGATGGCAAAGTCCGTACCGACCCTAATTATCCAGCCG SEQ ID NO: 1044 ACTATAGGCAATAC GTTTTATGGATGTTATATCTATCCAAAAGACCAGTGAGCACTTTAGATTGATCTATG GTTTAAACGCACCC CAACACGCCCTAAA ATGTGAAAGGTCGTTTCACCATCCACAGAATTACTCCTGAAGAAGCAAAATACAAG AAAGCATGG TTGC TTGTGTAAAGTAAAGAGGGTACAAACTGGACCCAAAGGTGTGCCATTTTTAACTAC TCATGATGGCCGTACTATTCGCTACCCTGACCCTAACATCAAGGTTAATGACACTA TTAGATACGATATTGCATCATCTAAAATTTTGGATCATATCCGTTTTGAAACTGGAA ACTTGTGCATGATAACTGGAGGTCGCAATTTAGGGCGTGTTGGTATTG MP002 SEQ ID NO: 1047 SEQ ID NO: 1048 SEQ ID NO: 1046 GCGTAATACGACTC GCTGATTTAAGTGC GGTGGCAAAAAGGAAGAGAAGGGACCATCAACCGAAGATGCGATACAAAAGCTT ACTATAGGGGTGGC ATCTGCTGC CGATCCACTGAAGAGATGCTGATAAAGAAACAAGAATTTTTAGAAAAAAAAATTGA AAAAAGAAGAGAA SEQ ID NO: 1050 ACAAGAAGTAGCGATAGCCAAAAAAAATGGTACAACTAATAAACGAGCTGCATTG GG GCGTAATACGACTC CAAGCATTGAAGCGTAAGAAACGGTACGAACAACAATTAGCCCAAATTGATGGTA SEO ID NO: 1049 ACTATAGGGCTGAT CCATGTTAACTATTGAACAACAGCGGGAGGCATTAGAAGGTGCCAACACAAATAC GGTGGCAAAAAGGA TTAAGTGCATCTGCT AGCAGTATTGACTACCATGAAAACTGCAGCAGATGCACTTAAATCAGC AGAGAAGG GC MP010 SEQ ID NO: 1052 SEQ ID NO: 1053 SEQ ID NO: 1051 GCGTAATACGACTC GCATTGGGAATCGA CAGACCCTGTTCAGAATATGATGCATGTTAGTGCTGCATTTGATCAAGAAGCATCT ACTATAGGCAGACC GTTTTGAG GCCGTTTTAATGGCTCGTATGGTAGTGAACCGTGCTGAAACTGAGGATAGTCCAG CTGTTCAGAATATG SEQ ID NO: 1055 ATGTGATGCGTTGGGCTGATCGTACGCTTATACGCTTGTGTCAAAAATTTGGTGAT SEQ ID NO: 1054 GCGTAATACGACTC TATCAAAAAGATGATCCAAATAGTTTCCGATTGCCAGAAAACTTCAGTTTATATCCA CAGACCCTGTTCAG ACTATAGGGCATTG CAGTTCATGTATCATTTAAGAAGGTCTCAATTTCTACAAGTTTTTAATAATAGTCCT AATATG GGAATCGAGTTTTG GATGAAACATCATATTATAGGCACATGTTGATGCGTGAAGATGTTACCCAAAGTTT AG AATCATGATACAGCCAATTCTGTATAGCTATAGTTTTAATGGTAGGCCAGAACCTG TACTTTTGGATACCAGTAGTATTCAACCTGATAAAATATTATTGATGGACACATTTT TCCATATTTTGATATTCCATGGAGAGACTATTGCTCAATGGAGAGCAATGGATTAT CAAAATAGACCAGAGTATAGTAACCTCAAGCAGTTGCTTCAAGCCCCCGTTGATG ATGCTCAGGAAATTCTCAAAACTCGATTCCCAATGC MP016 SEQ ID NO: 1057 SEQ ID NO: 1058 SEQ ID NO: 1056 GCGTAATACGACTC CGTGGTGTAATGAT GTTTTCAATGGCAGTGGAAAGCCGATAGATAAAGGACCTCCTATTTTGGCTGAAG ACTATAGGGTTTTCA ACGCTC ATTATTTGGATATTGAAGGCCAACCTATTAATCCATACTCCAGAACATATCCTCAAG ATGGCAGTGGAAAGC SEQ ID NO: 1060 AAATGATTCAAACTGGTATTTCAGCTATTGATATCATGAACTCTATTGCTCGTGGAC SEQ ID NO: 1059 GCGTAATACGACTC AAAAAATTCCAATATTTTCAGCTGCAGGTTTACCACATAATGAGATTGCTGCTCAAA GTTTTCAATGGCAGT ACTATAGGCGTGGT TTTGTAGACAAGCTGGTCTCGTTAAAAAACCTGGTAAATCAGTTCTTGACGATCAT GGAAAGC GTAATGATACGCTC GAAGACAATTTTGCTATAGTATTTGCTGCTATGGGTGTTAATATGGAAACAGCCAG ATTCTTTTAAAACAAGATTTTGAGGAAAATGGTTCAATGGAGAATGTTTGTTTGTTCTT GAATTTAGCTAATGATCCTACTATTGAGCGTATCATTACACCACG MP027 SEQ ID NO: 1062 SEQ ID NO: 1063 SEQ ID NO: 1061 GCGTAATACGACTC CCAAAAATACCATCT GCTCGTTTGTTTCCATCCAGAACTTCCCATCGTGTTAACTGGCTCAGAAGATGGTA ACTATAGGGCTCGT GCTCCACC CCGTCAGAATTTGGCATTCTGGTACTTATCGATTAGAATCATCATTAAACTATGGG TTGTTTCCATCCAGA SEQ ID NO: 1065 TTAGAACGTGTATGGACAATCTGTTGCTTACGGGGATCTAATAATGTAGCTCTAGG AC GCGTAATACGACTC TTATGATGAAGGAAGTATAATGGTTAAAGTTGGTCGTGAAGAGCCAGCAATGTCAA SEQ ID NO: 1064 ACTATAGGCCAAAA TGGATGTTCATGGGGGTAAAATTGTTTGGGCACGTCATAGTGAAATTCAACAAGCT GCTCGTTTGTTTCCA ATACCATCTGCTCCA AACCTTAAAGCGATGCTTCAAGCAGAAGGAGCCGAAATCAAAGATGGTGAACGTT TCCAGAAC CC TACCAATACAAGTTAAAGACATGGGTAGCTGTGAAATTTATCCACAGTCAATATCT CATAATCCGAATGGTAGATTTTTAGTAGTATGTGGTGATGGAGAGTATATTATATAT ACATCAATGGCTTTTGCGTAATAAAGCATTTGGCTCCGCTCAGGATTTTGTATGGTC TTCTGATTCTGAGTATGCCATTAGAGAAAATTCTTCTACAATCAAAGTTTTTAAAAA TTTTAAAGAAAAAAAGTCTTTTAAACCAGAAGGTGGAGCAGATGGTATTTTTGG -
TABLE 8-NL Target Primers Forward Primers Reverse dsRNA DNA Sequence ID 5′ → 3′ 5′ → 3′ 5′ → 3′ NL001 SEQ ID NO: 1573 SEQ ID NO: 1574 SEQ ID NO: 1572 GCGTAATACGACTCA ACTGAGCTTCACA GAAATCATGGATGTTGGACAAATTGGGTGGTGTGTATGCACCCCGACCCAGCACA CTATAGGGAAATCAT CCCTTGCCC GGTCCACACAAGCTGCGAGAATCTCTCCCACTTGTCATATTTTTGCGTAATCGGCT GGATGTTGGACAAAT SEQ ID NO: 1576 CAAGTACGCTTTAACTAACTGTGAAGTGAAGAAAATTGTGATGCAGCGTCTCATCA TGG GCGTAATACGACT AGGTTGACGGCAAAGTGAGGACTGACCCCAACTATCCTGCAGGTTTTATGGACGT SEQ ID NO: 1575 CACTATAGGACTG TGTTCAAATCGAAAAGACAAACGAGTTCTTCCGTTTGATCTATGATGTTAAGGGAC GAAATCATGGATGTT AGCTTCACACCCT GTTTCACCATCCACAGGATCACAGCTGAAGAAGCTAAGTACAAGCTGTGCAAAGT GGACAAATTGG TGCCC GAAGAGGGTTCAGACAGGACCCAAGGGCATTCCATTTTTGACCACTCACGATGGA CGCACCATCAGGTATCCAGACCCCTTAGTAAAAGTCAATGACACCATCCAATTGG ACATTGCCACATCCAAAATCATGGACTTCATCAGATTCGACTCTGGTAACCTGTGT ATGATCACTGGAGGTCGTAACTTGGGTCGTGTGGGCACTGTCGTGAACAGGGAG CGACACCCGGGGTCTTTCGACATCGTGCACATCAAGGACGTGTTGGGACACACTT TTGCCACTAGGTTGAACAACGTTTTCATCATCGGCAAGGGTAGTAAAGCATACGT GTCTCTGCCCAAGGGCAAGGGTGTGAAGCTCAGT NL002 SEQ ID NO: 1578 SEQ ID NO: 1579 SEQ ID NO: 1577 GCGTAATACGACTCA CTGATCCACATCC GATGAAAAGGGCCCTACAACTGGCGAAGCCATTCAGAAACTACGCGAAACAGAG CTATAGGGATGAAAA ATGTGTTGATGAG GAAATGCTGATAAAGAAACAAGACTTTTAGAAAAGAAAATTGAAGTTGAAATTGG GGGCCCTACAACTGGC SEQ ID NO: 1581 AGTTGCCAGGAAGAATGGAACAAAAAACAAAAGAGCCGCGATCCAGGCACTCAAA SEQ ID NO: 1580 GCGTAATACGACT AGGAAGAAGAGGTATGAAAAGCAATTGCAGCAGATCGATGGAACGTTATCAACAA GATGAAAAGGGCCCT CACTATAGGCTGA TTGAGATGCAGAGAGAGGCCCTCGAAGGAGCCAACACGAATACGGCCGTACTGC ACAACTGGC TCCACATCCATGT AAACTATGAAGAACGCAGCAGATGCTCTCAAAGCGGCTCATCAACACATGGATGT GTTGATGAG GGATCAG NL003 SEQ ID NO: 1583 SEQ ID NO: 1584 SEQ ID NO: 1582 GCGTAATACGACTCA TTGACGCGACCAG TCCGCGTCGTCCTTACGAGAAGGCACGTCTCGAACAGGAGTTGAAGATCATCGG CTATAGGTCCGCGTC GTCGGCCAC AGAGTATGGACTCCGTAACAAGCGTGAGGTGTGGAGAGTCAAATACGCCCTGGC GTCCTTACGAGAAGGC SEQ ID NO: 1586 CAAGATTCGTAAGGCCGCTCGTGAGCTGTTGACTCTGGAAGAGAAGGACCAGAA SEQ ID NO: 1585 GCGTAATACGACT ACGTTTGTTTGAAGGTAACGCCCTGCTGCGTCGCCTGGTGCGTATTGGAGTGTTG TCCGCGTCGTCCTTA CACTATAGGTTGA GACGAAGGAAGAATGAAGCTCGATTACGTCTTGGGTTTAAAAATTGAAGATTTCCT CGAGAAGGC CGCGACCAGGTCG TGAACGTCGTCTACAGACTCAGGTGTACAAACTCGGTTTGGCCAAGTCCATCCAT GCCAC CACGCCCGTGTACTCATCAGACAAAGACATATCAGAGTGCGCAAACAAGTAGTGA ACATTCCGAGCTTTGTGGTGCGCCTGGACTCGCAGAAGCACATTGACTTCTCGCT GAAGTCGCCGTTCGGCGGTGGCCGACCTGGTCGCGTCAA NL004 SEQ ID NO: 1588 SEQ ID NO: 1589 SEQ ID NO: 1587 GCGTAATACGACTCA CTGTTGTTGACTGT GGAGTTGGCTGCTGTAAGAACTGTCTGCTCTCACATCGAAAACATGCTGAAGGGA CTATAGGGGAGTTGG TGGATGAGG GTCACAAAGGGATTCCTGTACAAGATGCGTGCCGTGTACGCCCATTTCCCCATCA CTGCTGTAAGAACTG SEQ ID NO: 1591 ACTGTGTGACGACCGAGAACAACTCTGTGATCGAGGTGCGTAACTTCCTGGGCG SEQ ID NO: 1590 GCGTAATACGACT AGAAGTACATCCGACGGGTGAGGATGGCGCCCGGCGTCACTGTTACCAACTCGA GGAGTTGGCTGCTGT CACTATAGGCTGT CAAAGCAGAAGGACGAGCTCATCGTCGAAGGAAACAGCATAGAGGACGTGTCAA AAGAACTG TGTTGACTGTTGG GATCAGCTGCCCTCATCCAACAGTCAACAACAG ATGAGG NL005 SEQ ID NO: 1593 SEQ ID NO: 1594 SEQ ID NO: 1592 GCGTAATACGACTCA CCTTCGCTTCTTG CGCAAACACAAATTCACGTCAAAGCATCAGGAAGCTGATCAAAGACGGTCTTATC CTATAGGCGCAAACA GCCTCCTTGAC ATCAAGAAACCGGTTGCAGTACATTCACGTGCTCGCGTTCGTAAAAACACTGAAG CAAATTCACGTCAAAGC SEQ ID NO: 1596 CCAGGAGGAAAGGCAGACATTGTGGCTTTGGTAAGAGGAAAGGTACAGCCAACG SEQ ID NO: 1595 GCGTAATACGACT CCCGTATGCCACAAAAGGTTCTATGGGTGAATCGTATGCGTGTCTTGAGAAGACT CGCAAACACAAATTCA CACTATAGGCCTT GTTGAAAAAATACAGACAAGATAAGAAAATCGACAGGCATCTGTACCATCACCTTT CGTCAAAGC CGCTTCTTGGCCT ACATGAAGGCTAAGGGTAACGTATTCAAGAACAAGCGTGTATTGATGGAGTTCATT CCTTGAC CATAAGAAGAAGGCCGAGAAAGCAAGAATGAAGATGTTGAACGACCAGGCTGAA GCTCGCAGACAAAAGGTCAAGGAGGCCAAGAAGCGAAGG NL006 SEQ ID NO: 1598 SEQ ID NO: 1599 SEQ ID NO: 1597 GCGTAATACGACTCA CGAGATGGGATAG GTGCTTGTGTCAAGTGGTGTGGTGGAGTACATTGACACCCTGGAGGAGGAGACG CTATAGGGTGCTTGT CGTGAGG ACCATGATAGCGATGTCGCCGGATGACCTGCGTCAGGACAAGGAGTATGCCTAC GTCAAGTGGTGTGG SEQ ID NO: 1601 TGTACCACCTACACGCACTGCGAGATCCACCCGGCCATGATACTCGGTGTGTGC SEQ ID NO: 1600 GCGTAATACGACT GCCTCTATTATTCCCTTCCCCGATCACAACCAAAGTCCCAGGAACACCTATCAGA GTGCTTGTGTCAAGT CACTATAGGCGAG GCGCTATGGGGAAACAGGCGATGGGCGTGTACATCACCAACTTCCACGTGCGAA GGTGTGG ATGGGATAGCGTG TGGACACGCTGGCTCACGTGCTGTTCTACCCGCACAAGCCACTGGTCACCACTC AGG GCTCCATGGAGTACCTGCGCTTCAGGGAGCTTCCTGCCGGCATCAACTCTGTGG TCGCCATCGCCTGCTACACTGGATACAACCAGGAGGACAGTGTCATTCTCAACGC CTCCGCTGTCGAGCGCGGATTCTTCAGATCGGTTTTCTTCCGATCTTACAAAGAT GCAGAATCGAAGCGTATTGGCGACCAAGAGGAGCAATTCGAGAAGCCCACCAGA CAGACGTGTCAGGGAATGAGGAATGCCATTTATGACAAATTGGACGATGATGGCA TCATTGCTCCCGGTCTGAGAGTGTCTGGTGACGATGTGGTTATTGGCAAAACCAT AACACTGCCCGATAATGATGACGAGCTGGAAGGTACAACAAAGAGGTTCACGAAG AGAGATGCCAGTACTTTCCTGCGTAACAGTGAGACGGGAATCGTCGACCAAGTCA TGTTAACCTTGAACTCTGAGGGTTACAAGTTCTGCAAAATTCGAGTCAGGTCTGTG CGTATCCCGCAGATTGGCGATAAGTTCGCTTCCCGACATGGCCAAAAAGGAACGT GTGGAATACAGTATCGTCAAGAGGACATGCCTTTTACAAGCGAGGGAATCGCACC GGATATTATTATCAATCCTCACGCTATCCCATCTCG NL007 SEQ ID NO: 1603 SEQ ID NO: 1604 SEQ ID NO: 1602 GCGTAATACGACTCA CCACGGTGAATAG TGAGAGCAATCCTTGACTGTGGTTTTGAACATCCATCTGAAGTACAACATGAATGC CTATAGGTGAGAGCA CCACTGC ATTCCTCAAGCTGTACTTGGAATGGACATATTGTGTCAAGCGAAATCCGGTATGG ATCCTTGACTGTGG SEQ ID NO: 1606 GAAAAACTGCTGTATTTGTGTTGGCGACATTACAGCAAATTGAACCAACTGACAAC SEQ ID NO: 1605 GCGTAATACGACT CAAGTCAGTGTATTGGTCATGTGTCATACCAGAGAGCTTGCATTCCAAATCAGCAA TGAGAGCAATCCTTG CACTATAGGCCAC AGAGTATGAACGATTTTCGAAATGTATGCCAAATATCAAGGTTGGAGTTTTCTTCG ACTGTGG GGTGAATAGCCAC GCGGACTGCCGATTCAGAGGGATGAGGAGACGTTGAAATTGAACTGTCCTCACAT TGC CGTGGTTGGAACACCCGGACGAATTTTGGCGTTGGTACGCAACAAGAAGCTGGA CCTCAAGCATCTCAAGCACTTTGTCCTTGACGAATGTGACAAAATGTTGGAACTGT TAGATATGCGAAGAGATGTGCAGGAAATATTCCGAAACACGCCGCACAGCAAACA AGTCATGATGTTCAGTGCAACTCTCAGCAAAGAAATTCGTCCAGTCTGCAAGAAAT TCATGCAAGATCCGATGGAAGTGTACGTTGATGACGAGGCCAAGCTGACGCTTCA CGGCCTGCAGCAGCACTATGTCAAACTCAAAGAAAACGAAAAGAACAAAAAGTTA TTTGAATTACTTGACATACTTGAATTCAACCAGGTTGTTATATTTGTGAAGTCAGTG CAGCGCTGCATGGCCCTATCGCAACTCCTAACAGAGCAGAACTTCCCTGCAGTG GCTATTCACCGTGG NL008 SEQ ID NO: 1608 SEQ ID NO: 1609 SEQ ID NO: 1607 GCGTAATACGACTCA GAGCGAGTCTACA GATGCTGGAGACCTGGAGGTGTATTAGATGTTTCAAACAGTTTTGCAGTTCCATTT CTATAGGGATGCTGG AAATTGCCG GATGAGGACGACAAAGAAAAGAATGTTTGGTTCTTAGACCATGATTACTTGGAAAA AGACCTGGAGGTG SEQ ID NO: 1611 CATGTTCGGGATGTTCAAGAAAGTTAATGCTAGAGAAAAGGTTGTGGGTTGGTAC SEQ ID NO: 1610 GCGTAATACGACT CATACTGGACCCAAACTCCACCAAAACGATGTTGCAATCAATGAGTTGATTCGTCG GATGCTGGAGACCTG CACTATAGGGAGC TTACTGTCCAAACTGTGTCTTAGTCATAATCGATGCCAAGCCTAAAGATTTGGGTC GAGGTG GAGTCTACAAAATT TACCTACAGAGGCATACAGAGTCGTTGAAGAAATCCATGATGATGGATCGCCAAC GCCG ATCAAAAACATTTGAACATGTGATGAGTGAGATTGGGGCAGAAGAGGCTGAGGAG ATTGGCGTTGAACATCTGTTGAGAGACATCAAAGATACAACAGTCGGGTCACTGT CACAGCGCGTCACAAATCAGCTGATGGGCTTGAAGGGCTTGCATCTGCAATTACA GGATATGCGAGACTATTTGAATCAGGTTGTCGAAGGAAAGTTGCCAATGAACCAT CAAATCGTTTACCAACTGCAAGACATCTTCAACCTTCTACCCGATATCGGCCACGG CAATTTTGTAGACTCGCTC NL009 SEQ ID NO: 1613 SEQ ID NO: 1614 SEQ ID NO: 1612 GCGTAATACGACTCA GTGTAAGGGTAGA GCGACTATGATCGACCGCCGGGACGCGGTCAGGTGTGCGACGTCGACGTCAAG CTATAGGGCGACTAT AGTAGCCCGG AACTGGTTTCCCTGCACCTCTGAGAACAATTTCAACTACCATCAATCGAGCCCTTG GATCGACCGCC SEQ ID NO: 1616 TGTTTTTCTCAAACTGAACAAGATAATTGGTTGGCAACCGGAGTACTACAATGAGA SEQ ID NO: 1615 GCGTAATACGACT CTGAAGGCTTTCCAGATAATATGCCAGGTGACCTCAAGCGACACATTGCCCAACA GCGACTATGATCGAC CACTATAGGGTGT GAAGAGTATCAACAAGCTGTTTATGCAACAATCTGGATAACTTGCGAAGGAGAG CGCC AAGGGTAGAAGTA GGTCCTCTAGACAAGGAGAATGCAGGGGAGATCCAGTACATCCCTAGACAGGGA GCCCGG TTTCCGGGCTACTTCTACCCTTACAC NL010 SEQ ID NO: 1618 SEQ ID NO: 1619 SEQ ID NO: 1617 GCGTAATACGACTCA GCAACTCCAGTAG GCTTGTTGTTCCCGTTGGATGTCTGTATCAACCTTTGAAGGAGAGACCTGATCTAC CTATAGGGCTTGTTGT ATCGGAGAGGTC CGCCTGTACAGTACGATCCAGTTCTTTGTACTAGGAATACTTGTCGTGCAATTCTG TCCCGTTGGATGTC SEQ ID NO: 1621 AATCCATTGTGCCAAGTCGACTATCGAGCCAAGCTATGGGTCTGCAACTTTTGTTT SEQ ID NO: 1620 GCGTAATACGACT CCAGAGGAATCCTTCCCCCCTCAATATGCAGCTATTTCGGAGCAGCATCAACCA GCTTGTTGTTCCCGTT CACTATAGGGCAA GCAGAACTGATACCTTCATTTTCCACCATCGAATACATCATTACCAGAGCGCAAAC GGATGTC CTCCAGTAGATCG GATGCCGCCGATGTTCGTGCTGGTGGTGGACACATGTCTGGACGACGAGGAGCT GAGAGGTC GGGAGCTTTGAAGGACTCACTGCAGATGTCGCTGTCGCTGCTGCCGCCCAATGC ACTCATCGGTCTCATCACGTTCGGCAAAATGGTGCAGGTGCACGAGCTTGGCTGC GACGGCTGCTCGAAGAGCTACGTGTTCCGTGGCGTGAAGGACCTGACTGCCAAG CAGATCCAGGACATGTTGGGCATTGGCAAGATGGCCGCCGCTCCACAGCCCATG CAACAGCGCATTCCCGGCGCCGCTCCCTCCGCACCTGTCAACAGATTTCTTCAGC CTGTCGGAAAGTGCGATATGAGTTTAACTGATCTGCTTGGGGAATTGCAAAGAGA TCCATGGAATGTGGCTCAGGGCAAGAGACCTCTCCGATCTACTGGAGTTGC NL011 SEQ ID NO: 1623 SEQ ID NO: 1624 SEQ ID NO: 1622 CCCACTTTCAAGTGY GTCCATTGTGACC GTTGCCACCCTTGGAGTTGAAGTTCACCCCCTTGTATTTCACACAAACAGAGGTG GTRYTRGTCGG TCGGGAGG TGATTAGGTTCAATGTGTGGGACACAGCTGGCCAGGAAAAGTTCGGTGGACTTCG SEQ ID NO: 1625 SEQ ID NO: 1626 TGATGGATATTACATTCAGGGACAATGCGCCATCATTATGTTTGACGTAACGTCAA GTTGCCACCCTTGGA GCGTAATACGACT GAGTCACCTACAAGAACGTTCCCAACTGGCACAGAGATTTAGTGAGGGTTTGCGA GTTGAAG CACTATAGGGTCC AAACATTCCCATTGTACTATGCGGCAACAAAGTAGACATCAAGGACAGGAAAGTC ATTGTGACCTCGG AAGGCCAAGAGCATAGTCTTCCATAGGAAGAAGAACCTTCAGTACTACGACATCA GAGG GTGCGAAAAGCAACTACAACTTCGAGAAGCCGTTCCTGTGGTTGGCAAAGAAGCT GATCGGTGACCCCAACCTGGAGTTCGTCGCCATGCCCGCCCTCCTCCCACCCGA GGTCACAATGGAC NL012 SEQ ID NO: 1628 SEQ ID NO: 1629 SEQ ID NO: 1627 GCGTAATACGACTCA GAATTTCCTCTTGA GCAGCAGACGCAGGCACAGGTAGACGAGGTTGTCGATATAATGAAAACAAACGTT CTATAGGGCAGCAGA GTTTGCCAGCTTG GAGAAAGTATTGGAGAGGGATCAAAAACTATCAGAATTGGATGATCGAGCAGATG CGCAGGCACAGGTAG SEQ ID NO: 1631 CTCTACAGCAAGGCGCTTCACAGTTTGAACAGCAAGCTGGCAAACTCAAGAGGAA SEQ ID NO: 1630 GCGTAATACGACT ATTC GCAGCAGACGCAGGC CACTATAGGGAAT ACAGGTAG TTCCTCTTGAGTTT GCCAGCTTG NL013 SEQ ID NO: 1633 SEQ ID NO: 1634 SEQ ID NO: 1632 GCGTAATACGACTCA GGCAACGGCTCTC CGCAGAGCAAGTCTACATCTCTTCACTGGCCTTATTGAAAATGCTTAAGCACGGTC CTATAGGCGCAGAGC TTGGATAG GCGCCGGTGTTCCCATGGAAGTTATGGGCCTAATGCTGGGCGAATTTGTAGACG AAGTCTACATCTCTTC SEQ ID NO: 1636 ACTACACTGTGCGTGTCATTGATGTATTCGCTATGCCACAGAGTGGAACGGGAGT SEQ ID NO: 1635 GCGTAATACGACT GAGTGTGGAGGCTGTAGACCCGGTGTTCCAAGCGAAGATGTTGGACATGCTAAA CGCAGAGCAAGTCTA CACTATAGGGGCA GCAGACAGGACGGCCCGAGATGGTGGTGGGCTGGTACCACTCGCACCCGGGCT CATCTCTTC ACGGCTCTCTTGG TCGGCTGCTGGCTGTCGGGTGTCGACATCAACACGCAGGAGAGCTTCGAGCAAC ATAG TATCCAAGAGAGCCGTTGCC NL014 SEQ ID NO: 1638 SEQ ID NO: 1639 SEQ ID NO: 1637 GCGTAATACGACTCA GAGCGCGACTCTA CATTGAGCAAGAAGCCAATGAGAAAGCCGAAGAGATCGATGCCAAGGCCGAGGA CTATAGGCATTGAGC ATCTCGG AGAATTCAACATTGAAAAGGGAAGGCTCGTACAGCACCAGCGCCTTAAAATCATG AAGAAGCCAATGAG SEQ ID NO: 1641 GAGTACTATGACAGGAAAGAGAAGCAGGTTGAGCTCCAGAAAAAAATCCAATCGT SEQ ID NO: 1640 GCGTAATACGACT CAAACATGCTGAACCAAGCGCGTCTGAAGGCACTGAAGGTGCGCGAAGATCACG CATTGAGCAAGAAGC CACTATAGGGAGC TGAGAAGTGTGCTCGAAGAATCCAGAAAACGTCTTGGAGAAGTAACCAGAAACCC CAATGAG GCGACTCTAATCT AGCCAAGTACAAGGAAGTCCTCCAGTATCTAATTGTCCAAGGACTCCTGCAGCTG CGG CTAGAATCAAACGTAGTACTGCGCGTGCGCGAGGCTGACGTGAGTCTGATCGAG GGCATTGTTGGCTCATGCGCAGAGCAGTACGCGAAGATGACCGGCAAAGAGGTG GTGGTGAAGCTGGACGCTGACAACTTCCTGGCCGCCGAGACGTGTGGAGGCGTC GAGTTGTTCGCCCGCAACGGCCGCATCAAGATCCCCAACACCCTCGAGTCCAGG CTCGACCTCATCTCCCAGCAACTTGTGCCCGAGATTAGAGTCGCGCTC NL015 SEQ ID NO: 1643 SEQ ID NO: 1644 SEQ ID NO: 1642 GCGTAATACGACTCA GGCCAAAGCGCCT CTGCGAGTGCGCTTGTCCGACATTGTCTCGATCCAGCCTTGCCCAGACGTCAAGT CTATAGGCTGCGAGT AAGCGC ATGGAAAGCGTATCCATGTGCTGCCCATTGATGATACCGTTGAGGGTCTTACAGG GCGCTTGTCCG SEQ ID NO: 1646 AAATCTGTTCGAAGTGTATTTGAAGCCATACTTCCTGGAAGCATACAGGCCAATTC SEQ ID NO: 1645 GCGTAATACGACT ACAAGGATGATGCATTCATTGTTCGCGGAGGTATGAGAGCGGTCGAATTCAAGGT CTGCGAGTGCGCTTG CACTATAGGGGCC GGTTGAAACAGATCCATCGCCCTACTGCATTGTCGCGCCAGACACCGTCATCCAT TCCG AAAGCGCCTAAGC TGTGAGGGAGACCCCATCAAACGTGAGGATGAAGAAGACGCAGCAAACGCAGTC GC GGCTACGACGACATTGGAGGCTGCAGAAAGCAGCTGGCGCAGATCAAAGAGATG GTGGAGTTGCCGCTGAGACATCCCAGTCTGTTCAAGGCGATCGGCGTGAAGCCG CCACGAGGCATCCTGCTGTACGGACCACCGGGAACCGGAAAGACGTTGATAGCG CGCGCCGTCGCCAACGAAACGGGCGCCTTCTTCTTCCTCATCAACGGACCCGAG ATTATGAGCAAATTGGCCGGCGAGTCGGAGAGTAACCTGCGCAAAGCTTTCGAG GAAGCGGACAAAAACGCACCGGCCATCATCTTCATCGATGAGCTGGACGCAATC GCGCCAAAACGCGAGAAGACGCACGGCGAGGTGGAGCGACGCATCGTGTCGCA GCTGCTGACGCTGATGGACGGTCTCAAGCAGAGCTCGCACGTGATTGTCATGGC CGCCACCAATCGGCCCAACTCGATCGATGCCGCGCTTAGGCGCTTTGGCC NL016 SEQ ID NO: 1648 SEQ ID NO: 1649 SEQ ID NO: 1647 GCGTAATACGACTCA GATGGAGCCGTTG GACGCCAGTATCAGAAGACATGCTTGGTCGTGTATTCAACGGAAGTGGTAAGCCC CTATAGGGACGCCAG CGACC ATCGACAAAGGACCTCCCATTCTTGCTGAGGATTATCTCGACATTCAAGGTCAACC TATCAGAAGACATGC SEQ ID NO: 1651 CATCAATCCTTGGTCGCGTATCTATCCCGAGGAAATGATCCAGACTGGAATTTCA SEQ ID NO: 1650 GCGTAATACGACT GCCATCGACGTCATGAACTCGATTGCTCGTGGCCAGAAAATCCCCATCTTTTCAG GACGCCAGTATCAGA CACTATAGGGATG CTGCCGGTCTACCTCACAACGAAATTGCTGCTCAAATCTGTAGACAGGCTGGTCT AGACATGC GAGCCGTTGCGACC TGTCAACTGCCAGGAAAGTCAGTTCTCGATGACTCTGAGGACAACTTTGCTATTG TATTCGCAGCCATGGGAGTCAACATGGAAACTGCTCGATTCTTCAAACAGGATTTC GAGGAGAACGGCTCTATGGAGAACGTGTGCCTGTTCTTGAACCTGGCGAACGAC CCGACGATCGAGCGTATCATCACACCACGCCTGGCGCTGACGGCCGCCGAGTTC CTGGCCTACCAGTGCGAGAAGCACGTGCTCGTCATCCTCACCGACATGAGCTCC TACGCCGAGGCGCTGCGAGAGGTGTCCGCCGCCCGCGAGGAGGTGCCCGGCC GTCGTGGTTTCCCCGGTTACATGTACACCGATCTGGCCACCATCTACGAGCGCGC CGGACGAGTCGAGGGTCGCAACGGCTCCATC NL018 SEQ ID NO: 1653 SEQ ID NO: 1654 SEQ ID NO: 1652 GCGTAATACGACTCA GCAATACAGCCGA GCAAATGCCTGTGCCACGCCCACAAATAGAAAGCACACAACAGTTTATTCGATCC CTATAGGGCAAATGC CCACTCCG GAGAAAACAACATACTCGAATGGATTCACCACCATTGAGGAGGACTTCAAAGTAG CTGTGCCACGC SEQ ID NO: 1656 ACACTTTCGAATACCGTCTTCTGCGCGAGGTGTCGTTCCGCGAATCTCTGATCAG SEQ ID NO: 1655 GCGTAATACGACT AAACTACTTGCACGAGGCGGACATGCAGATGTCGACGGTGGTGGACCGAGCATT GCAAATGCCTGTGCC CACTATAGGGCAA GGGTCCCCCCTCGGCGCCACACATCCAGCAGAAGCCGCGCAACTCAAAAATCCA ACGC TACAGCCGACCAC GGAGGGCGGCGATGCCGTCTTTTCCATCAAGCTCAGCGCCAACCCCAAGCCTCG TCCG GCTGGTCTGGTTCAAGAACGGTCAGCGCATCGGTCAGACGCAGAAACACCAGGC CTCCTACTCCAATCAGACCGCCACGCTCAAGGTCAACAAAGTCAGCGCTCAAGAC TCCGGCCACTACACGCTGCTTGCTGAAAATCCGCAAGGATGTACTGTGTCCTCAG CTTACCTAGCTGTCGAATCAGCTGGCACTCAAGATACAGGATACAGTGAGCAATA CAGCAGACAAGAGGTGGAGACGACAGAGGCGGTGGACAGCAGCAAGATGCTGG CACCGAACTTTGTTCGCGTGCCGGCCGATCGCGACGCGAGCGAAGGCAAGATGA CGCGGTTTGACTGCCGCGTGACGGGCCGACCCTACCCGGACGTGGCCTGGTTC ATCAACGGCCAACAGGTGGCTGACGACGCCACGCACAAGATCCTCGTCAACGAG TCTGGCAACCACTCGCTCATGATCACCGGCGTCACTCGCTTGGACCACGGAGTG GTCGGCTGTATTGC NL019 SEQ ID NO: 1658 SEQ ID NO: 1659 SEQ ID NO: 1657 GCGTAATACGACTCA GAACGCCTGCTCC GCTTCAGATTTGGGACACGGCCGGCCAGGAGCGGTTCCGCACGATCACATCGAG CTATAGGGCTTCAGA ACATTGG CTACTACCGGGGCGCCCACGGCATCATTGTGGTGTACGACTGCACCGACCAGGA TTTGGGACACGGC SEQ ID NO: 1661 GTCGTTCAACAACCTCAAACAGTGGCTCGAGGAGATTGACCGCTACGCCTGTGAT SEQ ID NO: 1660 GCGTAATACGACT AATGTCAACAAACTGCTCGTCGGCAACAAGTGTGATCAGACCAACAAAAAGGTCG GCTTCAGATTTGGGA CACTATAGGGAAC TCGACTATACACAGGCTAAGGAATACGCCGACCAGCTGGGCATTCCGTTCCTGGA CACGGC GCCTGCTCCACAT GACGTCGGCGAAGAACGCGACCAATGTGGAGCAGGCGTTC TGG NL021 SEQ ID NO: 1663 SEQ ID NO: 1664 SEQ ID NO: 1662 GCGTAATACGACTCA CTTCTAGTTCATCC CGTCAGTCTCAATTCTGTCACCGATATCAGCACCACGTTCATTCTCAAGCCACAAG CTATAGGCGTCAGTC AGGTCGCG AGAACGTGAAGATAACGCTTGAGGGCGCACAGGCCTGTTTCATTTCACACGAACG TCAATTCTGTCACCG SEQ ID NO: 1666 ACTTGTGATCTCACTGAAGGGAGGAGAACTCTATGTTCTAACTCTCTATTCCGATA SEQ ID NO: 1665 GCGTAATACGACT GTATGCGCAGTGTGAGGAGTTTTCATCTGGAGAAAGCTGCTGCCAGTGTCTTGAC CGTCAGTCTCAATTCT CACTATAGGCTTCT TACTTGTATCTGTGTTTGTGAGGAGAACTATCTGTTCCTTGGTTCCCGTCTTGGAA GTCACCG AGTTCATCCAGGT ACTCACTGTTGCTCAGGTTTACTGAGAAGGAATTGAACCTGATTGAGCCGAGGGC CGCG CATCGAAAGCTCACAGTCCCAGAATCCGGCCAAGAAGAAAAAGCTGGATACTTTG GGAGATTGGATGGCATCTGACGTCACTGAAATACGCGACCTGGATGAACTAGAAG GGTGCTGAGAGCATATTCGGCGGCTACCTGCTGGGAGTTTGTTCGTTGTCTGGAC TGGCGCTGTACGACTGGGAGACCCTGGAGCTGGTGCGTCGCATCGAGATCCAAC CGAAACACGTGTACTGGTCGGAGAGTGGGGAGCTGGTGGCGCTGGCCACTGAT GACTCCTACTTTGTGCTCCGCTACGACGCACAGGCCGTGCTCGCTGCACGCGAC GCCGGTGACGACGCTGTCACGCCGGACGGCGTCGAGGATGCATTCGAGGTCCTT GGTGAAGTGCACGAAACTGTAAAAACTGGATTG NL022 SEQ ID NO: 1668 SEQ ID NO: 1669 SEQ ID NO: 1667 GCGTAATACGACTCA CAGACGGAAGCAC CTCACGAGAGGACGTTGCACACTGATATACTGTTCGGTTTGGTGAAAGATGTCGC CTATAGGCTCACGAG TTGCCG CCGATTCAGACCTGACTTGAAGCTGCTCATATCAAGCGCCACACTGGATGCTCAG AGGACGTTGCACAC SEQ ID NO: 1671 AAATTCTCCGAGTTTTTCGACGATGCACCCATCTTCAGGATTCCGGGCCGTAGATT SEQ ID NO: 1670 GCGTAATACGACT TCCGGTGGACATCTACTACACAAAGGCGCCCGAGGCTGACTACGTGGACGCATG CTCACGAGAGGACGT CACTATAGGCAGA TGTCGTTTCGATCCTGCAGATCCACGCCACTCAGCCGCTGGGAGACATCCTGGTC TGCACAC CGGAAGCACTTGC TTCCTCACCGGTCAGGAGGAGATCGAAACCTGCCAGGAGCTGCTGCAGGACAGA CG GTGCGCAGGCTTGGGTCTCGTATCAAGGAGCTGCTCATATTGCCCGTCTATTCCA ACCTACCCAGTGATATGCAGGCAAAGATTTTCCTGCCCACTCCACCAAATGCTAG AAAGGTAGTATTGGCCACAAATATTGCAGAAACCTCATTGACCATCGACAATATAA TCTACGTGATTGATCCTGGTTTTTGTAAGCAGAATAACTTCAATTCAAGGACTGGA ATGGAATCGCTTGTTGTAGTGCCTGTTTCAAAGGCATCGGCCAATCAGCGAGCAG GGCGGGCGGGACGGGTGGCGGCCGGCAAGTGCTTCCGTCTG NL023 SEQ ID NO: 1673 SEQ ID NO: 1674 SEQ ID NO: 1672 GCGTAATACGACTCA GCAATGTTGTCCTT GTCCTCGGACGGGAGGTCCACGTGTTTACCGGGATTCCGTTTGCGAAACCTCCC CTATAGGGTCCTCGG GAGCCAGC ATCGGTCCGTTGCGATTCCGTAAACCGGTTCCCGTCGACCCGTGGCACGGCGTT ACGGGAGGTCC SEQ ID NO: 1676 CTGGATGCGACCGCGCTTCCCAACAGCTGCTACCAGGAACGGTACGAGTATTTC SEQ ID NO: 1675 GCGTAATACGACT CCGGGCTTCGAGGGAGAGGAAATGTGGAATCCGAATACGAATTTGTCCGAAGATT GTCCTCGGACGGGAG CACTATAGGGCAA GTCTGTATTTGAACATATGGGTGCCGCACCGGTTGAGAATCCGACACAGAGCCAA GTCC TGTTGTCCTTGAG CAGCGAGGAGAATAAACCAAGAGCGAAGGTGCCGGTGCTGATCTGGATCTACGG CCAGC CGGGGGTTACATGAGCGGCACAGCTACACTGGACGTGTACGATGCTGACATGGT GGCCGCCACGAGTGACGTCATCGTCGCCTCCATGCAGTACCGAGTGGGTGCGTT CGGCTTCCTCTACCTCGCACAGGACTTGCCTCGAGGCAGCGAGGAGGCGCCGG GCAACATGGGGCTCTGGGACCAGGCCCTTGCCATCCGCTGGCTCAAGGACAACA TTGC NL027 SEQ ID NO: 1678 SEQ ID NO: 1679 SEQ ID NO: 1677 GCGTAATACGACTCA CAATCCAGTTTTTA AGAAGACGGCACGGTGCGTATTTGGCACTCGGGCACCTACAGGCTGGAGTCCTC CTATAGGAGAAGACG CAGTTTCGTGC GCTGAATTATGGCCTCGAAAGAGTGTGGACCATTTGCTGCATGCGAGGATCCAAC GCACGGTGCG SEQ ID NO: 1681 AATGTGGCTCTTGGCTACGACGAAGGCAGCATAATGGTGAAGGTGGGTCGGGAG SEQ ID NO: 1680 GCGTAATACGACT GAGCCGGCCATCTCGATGGATGTGAACGGTGAGAAGATTGTGTGGGCGCGCCAC AGAAGACGGCACGGT CACTATAGGCAAT TCGGAGATACAACAGGTCAACCTCAAGGCCATGCCGGAGGGCGTCGAAATCAAA GCG CCAGTTTTTACAGT GATGGCGAACGACTGCCGGTCGCCGTTAAGGATATGGGCAGCTGTGAAATATAT TTCGTGC CCGCAGACCATCGCTCATAATCCCAACGGCAGATTCCTAGTCGTTTGTGGAGATG GAGAGTACATAATTCACACATCAATGGTGCTAAGAAATAAGGCGTTTGGCTCGGC CCAAGAGTTCATTTGGGGACAGGACTCGTCCGAGTATGCTATCAGAGAAGGAACA TCCACTGTCAAAGTATTCAAAAACTTCAAAGAAAAGAAATCATTCAAGCCAGAATTT -
TABLE 8-CS Target Primers Forward Primers Reverse dsRNA DNA Sequence (sense strand) ID 5′ → 3′ 5′ → 3′ 5′ → 3′ CS001 SEQ ID NO: 2041 SEQ ID NO: 2042 SEQ ID NO: 2040 TAAAGCATGGATGTT GCGTAATACGACTC TAAAGCATGGATGTTGGACAAACTGGGTGGCGTGTACGCGCCGCGGCCGTCGAC GGACAAACTGGG ACTATAGGGGTGAG CGGCCCCCACAAGTTGCGCGAGTGCCTGCCGCTGGTGATCTTCCTCAGGAACCG SEQ ID NO: 2043 TCGCACGCCCTTGCC GCTCAAGTACGCGCTCACCGGAAATGAAGTGCTTAAGATTGTAAAGCAGCGACTT GCGTAATACGACTC SEQ ID NO: 2044 ATCAAAGTTGACGGCAAAGTCAGGACAGACCCCACATATCCCGCTGGATTTATGG ACTATAGGTAAAGC GGTGAGTCGCACGC ATGTTGTTTCCATTGAAAAGACAAATGAGCTGTTCCGTCTTATATATGATGTCAAAG ATGGATGTTGGACA CCTTGCC GCAGATTTACTATTCACCGTATTACTCCTGAGGAGGCTAAATACAAGCTGTGCAAG AACTGGG GTGCGGCGCGTGGCGACGGGCCCCAAGAACGTGCCTTACCTGGTGACCCACGA CGGACGCACCGTGCGATACCCCGACCCACTCATCAAGGTCAACGACTCCATCCA GCTCGACATCGCCACCTCCAAGATCATGGACTTCATCAAGTTTGAATCTGGTAAC CTATGTATGATCACGGGAGGCCGTAACTTGGGGCGCGTGGGCACCATCGTGTCC CGCGAGCGACATCCCGGGTCCTTCGACATCGTGCATATACGGGACTCCACCGGA CATACCTTCGCTACCAGATTGAACAACGTGTTCATAATCGGCAAGGGCACGAAGG CGTACATCTCGCTGCCGCGCGGCAAGGGCGTGCGACTCACC CS002 SEQ ID NO: 2046 SEQ ID NO: 2047 SEQ ID NO: 2045 CAAGAAGGAGGAGA GCGTAATACGACTC CAAGAAGGAGGAGAAGGGTCCATCAACACACGAAGCTATACAGAAATTACGCGAA AGGGTCCATCAAC ACTATAGGCTTGTCT ACGGAAGAGTTATTGCAGAAGAAACAAGAGTTTCTAGAGCGAAAGATCGACACTG SEQ ID NO: 2048 ACATCGATATCCTTG AATTACAAACGGCGAGAAAACATGGCACAAAGAATAAGAGAGCTGCCATTGCGGC GCGTAATACGACTC TGGGC ACTGAAGCGCAAGAAGCGTTATGAAAAGCAGCTTACCCAGATTGATGGCACGCTT ACTATAGGCAAGAA SEQ ID NO: 2049 ACCCAAATTGAGGCCCAAAGGGAAGCGCTAGAAGGAGCTAACACCAATACACAG GGAGGAGAAGGGTC CTTGTCTACATCGAT GTGCTTAACACTATGCGAGATGCTGCTACCGCTATGAGACTCGCCCACAAGGATA CATCAAC ATCCTTGTGGGC TCGATGTAGACAAG CS003 SEQ ID NO: 2051 SEQ ID NO: 2052 SEQ ID NO: 2050 TGGTCTCCGCAACA GCGTAATACGACTC TGGTCTCCGCAACAAGCGTGAGGTGTGGAGGGTGAAGTACACGCTGGCCAGGAT AGCGTGAGG ACTATAGGCGAACG CCGTAAGGCTGCCCGTGAGCTGCTCACACTCGAGGAGAAAGACCCTAAGAGGTT SEQ ID NO: 2053 GAGACTTCAGCGAG ATTCGAAGGTAATGCTCTCCTTCGTCGTCTGGTGAGGATCGGTGTGTTGGATGAG GCGTAATACGACTC AAGTCA AAGCAGATGAAGCTCGATTATGTACTCGGTCTGAAGATTGAGGACTTCTTGGAAC ACTATAGGTGGTCT SEQ ID NO: 2054 GTCGTCTCCAGACTCAGGTGTTCAAGGCTGGTCTAGCTAAGTCTATCCATCATGC CCGCAACAAGCGTG CGAACGGAGACTTC CCGTATTCTTATCAGACAGAGGCACATCCGTGTCCGCAAGCAAGTTGTGAACATC AGG AGCGAGAAGTCA CCTTCGTTCATCGTGCGGCTGGACTCTGGCAAGCACATTGACTTCTCGCTGAAGT CTCCGTTCG CS006 SEQ ID NO: 2056 SEQ ID NO: 2057 SEQ ID NO: 2055 GGATGATGATGGTA GCGTAATACGACTC GGATGATGATGGTATAATTGCACCAGGGATTCGTGTATCTGGTGACGATGTAGTC TAATTGCACCAGGG ACTATAGGCGTTAAA ATTGGAAAAACTATAACTTTGCCAGAAAACGATGATGAGCTGGAAGGAACATCAA SEQ ID NO: 2058 TGGTGTAGCATCAC GACGATACAGTAAGAGAGATGCCTCTACATTCTTGCGAAACAGTGAAACTGGTATT GCGTAATACGACTC CTATTTCACC GTTGACCAAGTTATGCTTACACTTAACAGCGAAGGATACAAATTTTGTAAAATACG ACTATAGGGGATGA SEQ ID NO: 2059 TGTGAGATCTGTGAGAATCCCACAAATTGGAGACAAATTTGCTTCTCGTCATGGTC TGATGGTATAATTGC CGTTAAATGGTGTA AAAAAGGGACTTGTGGTATTCAATATAGGCAAGAAGATATGCCTTTCACTTGTGAA ACCAGGG GCATCACCTATTTCA GGATTGACACCAGATATTATCATCAATCCACATGCTATCCCCTCTCGTATGACAAT CC TGGTCACTTGATTGAATGTATTCAAGGTAAGGTCTCCTCAAATAAAGGTGAAATAG GTGATGCTACACCATTTAACG CS007 SEQ ID NO: 2061 SEQ ID NO: 2062 SEQ ID NO: 2060 CTTGTTGAAACCAG GCGTAATACGACTC CTTGTTGAAACCAGAGATTTTGAGGGCTATCGTCGATTGCGGTTTCGAGCACCCT AGATTTTGAGGGC ACTATAGGCGGCAT TCAGAAGTTCAACATGAATGTATTCCCCAAGCTGTTTTGGGAATGGATATTCTTTG SEQ ID NO: 2063 GTCATAATTGAAGAC TCAAAGCTAAATCCGGAATGGGAAAAACCGCCGTATTTGTTTTAGCAACACTGCAA GCGTAATACGACTC TATGTTGACTC CAGCTAGAACCTTCAGAAAACCATGTTTACGTATTAGTAATGTGCCATACAAGGGA ACTATAGGCTTGTTG SEQ ID NO: 2064 ACTCGCTTTCCAAATAAGCAAGGAATATGAGAGGTTCTCTAAATATATGGCTGGTG AAACCAGAGATTTTG CGGCATGTCATAATT TTAGAGTATCTGTATTCTTTGGTGGGATGCCAATTCAGAAAGATGAAGAAGTATTG AGGGC GAAGACTATGTTGA AAGACAGCCTGCCCGCACATCGTTGTTGGTACTCCTGGCAGAATATTAGCATTGG CTC TTAACAACAAGAAACTGAATTTAAAACACCTGAAACACTTCATCCTGGATGAATGT GACAAAATGCTTGAATCTCTAGACATGAGACGTGATGTGCAGGAAATATTCAGGA ACACCCCTCACGGTAAGCAGGTCATGATGTTTTCTGCAACATTGAGTAAGGAGAT CAGACCAGTCTGTAAGAAATTTATGCAAGATCCTATGGAAGTTTATGTGGATGATG AAGCTAAACTTACATTGCACGGTTTGCAGCAACATTATGTTAAACTCAAGGAAAAT GAAAAGAATAAGAAGTTATTTGAACTTTTGGATGTACTGGAGTTCAACCAAGTTGT CATATTTGTAAAGTCAGTGCAGCGCTGCATAGCTCTCGCACAGCTGCTGACAGAC CAAAACTTCCCAGCTATTGGTATACACCGAAATATGACTCAAGATGAGCGTCTCTC CCGCTATCAGCAGTTCAAAGATTTCCAGAAGAGGATCCTTGTTGCGACAAATCTTT TTGGACGGGGTATGGACATTGAAAGAGTCAACATAGT CTTCAATTAT GACATGCCG CS009 SEQ ID NO: 2066 SEQ ID NO: 2067 SEQ ID NO: 2065 ACGTTTCTGCAGCG GCGTAATACGACTC ACGTTTCTGCAGCGGCTGGACTCACGGGAGCCCATGTGGCAGCTGGACGAGAGC GCTGGACTC ACTATAGGGATAATT ATCATCGGCACCAACCCCGGGCTCGGCTTCCGGCCCACGCCGCCAGAGGTCGC SEQ ID NO: 2068 CTTATCGTACGCTGT CAGCAGCGTCATCTGGTATAAAGGCAACGACCCCAACAGCCAACAATTCTGGGTG GCGTAATACGACTC CATATTCCTG CAAGAAACCTCCAACTTTCTAACCGCGTACAAACGAGACGGTAAGAAAGCAGGAG ACTATAGGACGTTTC SEQ ID NO: 2069 CAGGCCAGAACATCCACAACTGTGATTTCAAACTGCCTCCTCCGGCCGGTAAGGT TGCAGCGGCTGGAC GATAATTCTTATCGT GTGCGACGTGGACATCAGCGCCTGGAGTCCCTGTGTAGAGGACAAGCACTTTGG TC ACGCTGTCATATTCC ATACCACAAGTCCACGCCCTGCATCTTCCTCAAACTCAACAAGATCTTCGGCTGG TG AGGCCGCACTTCTACAACAGCTCCGACAGCCTGCCCACTGACATGCCCGACGAC TTGAAGGAGCACATCAGGAATATGACAGCGTACGATAAGAATTATC CS011 SEQ ID NO 2071 SEQ ID NO: 2072 SEQ ID NO: 2070 CGACACTTGACTGG GCGTAATACGACTC CGACACTTGACTGGAGAGTTCGAGAAAAGATATGTCGCCACATTAGGTGTCGAGG AGAGTTCGAGA ACTATAGGCTCTAG TGCATCCCTTAGTATTCCACACAAATAGAGGCCCTATAAGGTTTAATGTATGGGAT SEQ ID NO: 2073 GTTACCATCACCGA ACTGCTGGCCAAGAAAAGTTTGGTGGTCTCCGAGATGGTTACTATATCCAAGGTC GCGTAATACGACTC TCAACT AATGTGCCATCATCATGTTCGATGTAACGTCTCGTGTCACCTACAAAAATGTACCC ACTATAGGCGACAC SEQ ID NO: 2074 AACTGGCACAGAGATTTAGTGCGAGTCTGTGAAGGCATTCCAATTGTTCTTTGTG TTGACTGGAGAGTT CTCTAGGTTACCATC GCAACAAAGTAGATATCAAGGACAGAAAAGTCAAAGCAAAAACTATTGTTTTCCAC CGAGA ACCGATCAACT AGAAAAAAGAACCTTCAGTATTATGACATCTCTGCCAAGTCAAACTACAATTTCGA GAAACCCTTCCTCTGGTTAGCGAGAAAGTTGATCGGTGATGGTAACCTAGAG CS013 SEQ ID NO: 2076 SEQ ID NO: 2077 SEQ ID NO: 2075 TGCCGAACAGGTAT GCGTAATACGACTC TGCCGAACAGGTATACATCTCGTCTTTGGCCCTGTTGAAGATGTTAAAACACGGG ACATCTCGTCTTTGG ACTATAGGCCACTA CGCGCCGGTGTTCCAATGGAAGTTATGGGACTTATGTTAGGTGAATTTGTTGATG SEQ ID NO: 2078 CAGCTACAGCACGT ATTACACGGTGCGTGTCATAGACGTATTTGCCATGCCTCAAACTGGCACAGGAGT GCGTAATACGACTC TCAGAC GTCGGTTGAAGCTGTAGATCCTGTCTTCCAAGCAAAGATGTTGGATATGTTGAAG ACTATAGGTGCCGA SEQ ID NO: 2079 CAAACTGGACGACCTGAGATGGTAGTGGGATGGTACCACTCGCATCCTGGCTTTG ACAGGTATACATCTC CCACTACAGCTACA GATGTTGGTTATCTGGAGTCGACATTAATACTCAGCAGTCTTTCGAAGCTTTGTCT GTCTTTGG GCACGTTCAGAC GAACGTGCTGTAGCTGTAGTGG CS014 SEQ ID NO: 2081 SEQ ID NO: 2082 SEQ ID NO: 2080 CAGATCAAGCATAT GCGTAATACGACTC AGATCAAGCATATGATGGCCTTCATCGAACAAGAGGCTAATGAAAAGGCCGAGGA GATGGCCTTCATCGA ACTATAGGGAACAA AATCGATGCAAAGGCCGAAGAGGAGTTCAACATTGAAAAAGGCCGCCTGGTGCA SEQ ID NO: 2083 TGCGGTACGTATTT GCAGCAGCGGCTCAAGATCATGGAATACTACGAAAAGAAAGAGAAACAAGTGGAA GCGTAATACGACTC CGGGC CTCCAGAAAAAGATCCAATCTTCGAACATGCTGAATCAAGCCCGTCTGAAGGTGC ACTATAGGCAGATC SEQ ID NO: 2084 TCAAAGTGCGTGAGGACCACGTACGCAACGTTCTCGACGAGGCTCGCAAGCGCC AAGCATATGATGGC GAACAATGCGGTAC TGGCTGAGGTGCCCAAAGACGTGAAACTTTACACAGATCTGCTGGTCACGCTCGT CTTCATCGA GTATTTCGGGC CGTACAAGCCCTATTCCAGCTCATGGAACCCACAGTAACAGTTCGCGTTAGGCAG GCGGACGTCTCCTTAGTACAGTCCATATTGGGCAAGGCACAGCAGGATTACAAAG CAAAGATCAAGAAGGACGTTCAATTGAAGATCGACACCGAGAATTCCCTGCCCGC CGATACTTGTGGCGGAGTGGAACTTATTGCTGCTAGAGGGCGTATTAAGATCAGC AACACTCTGGAGTCTCGTCTGGAGCTGATAGCCCAACAACTGTTGCCCGAAATAC GTACCGCATTGTTC CS015 SEQ ID NO: 2086 SEQ ID NO: 2087 SEQ ID NO: 2085 ATCGTGCTTTCAGA GCGTAATACGACTC ATCGTGCTTTCAGACGATAACTGCCCCGATGAGAAGATCCGCATGAACCGCGTCG CGATAACTGCCCC ACTATAGGCCATTAC TGCGAAACAACTTGCGTGTACGCCTGTCAGACATAGTCTCCATAGCGCCTTGTCC SEQ ID NO: 2088 GATCACGTGCGATG ATCGGTCAAATATGGGAAACGGGTACATATATTGCCCATTGATGATTCTGTCGAG GCGTAATACGACTC ACTTC GGTTTGACTGGAAATTTATTCGAAGTCTACTTGAAACCATACTTCATGGAAGCTTA ACTATAGGATCGTG SEQ ID NO: 2089 TCGGCCTATCCATCGCGATGACACATTCATGGTTCGCGGGGGCATGAGGGCTGT CTTTCAGACGATAAC CCATTACGATCACG TGAATTCAAAGTGGTGGAGACTGATCCGTCGCCGTATTGCATCGTCGCTCCCGAC TGCCCC TGCGATGACTTC ACAGTGATACACTGCGAAGGAGACCCTATCAAACGAGAGGAAGAAGAAGAAGCC CTAAACGCCGTAGGGTACGACGACATCGGTGGCTGTCGTAAACAGCTCGCTCAG ATCAAAGAGATGGTCGAGTTGCCTCTAAGGCATCCGTCGCTGTTCAAGGCAATTG GTGTGAAGCCGCCACGTGGAATCCTCATGTATGGGCCGCCTGGTACCGGCAAAA CTCTCATTGCTCGGGCAGTGGCTAATGAAACTGGTGCATTCTTCTTTCTGATCAAC GGGCCGGAGATCATGTCCAAACTCGCGGGCGAGTCCGAATCGAACCTTCGCAAG GCATTCGAGGAAGCGGACAAGAACTCCCCGGCTATAATCTTCATCGATGAACTGG ATGCCATCGCACCAAAGAGGGAGAAGACTCACGGTGAAGTGGAGCGTCGTATTG TGTCGCAACTACTTACTCTTATGGATGGAATGAAGAAGTCATCGCACGTGATCGTA ATGG CS016 SEQ ID NO: 2091 SEQ ID NO: 2092 SEQ ID NO: 2090 AGGATGGAAGCGGG GCGTAATACGACTC AGGATGGAAGCGGGGATACGTTTGAGCATCTCCTTGGGGAAGATACGGAGCAGC GATACGTTTGAG ACTATAGGGCACCC TGCCAGCCGATGTCCAGCGACTCGAATACTGTGCGGTTCTCGTAGTTGCCCTGTG SEQ ID NO: 2093 CTGTCTCCGAAGAC TGATGAAGTTCTTCTCGAACTTGGTGAGGAACTCGAGGTAGAGCAGATCGTCGGG GCGTAATACGACTC ATGTT TGTCAGGGCTTCCTCACCGACGACAGCCTTCATGGCCTGCACGTCCTTACCGATG ACTATAGGAGGATG SEQ ID NO: 2094 GCGTAGCAGGCGTACAGCTGGTTGGAAACATCAGAGTGGTCCTTGCGGGTCATT GAAGCGGGGATACG GCACCCCTGTCTCC CCCTCACCGATGGCAGACTTCATGAGACGAGACAGGGAAGGCAGCACGTTTACA TTTGAG GAAGACATGTT GGCGGGTAGATCTGTCTGTTGTGGAGCTGACGGTCTACGTAGATCTGTCCCTCAG TGATGTAGCCCGTTAAATCGGGAATAGGATGGGTGATGTCGTCGTTGGGCATAGT CAAGATGGGGATCTGCGTGATGGATCCGTTTCTACCCTCTACACGCCCGGCTCTC TCGTAGATGGTGGCCAAATCGGTGTACATGTAACCTGGGAAACCACGTCGTCCG GGCACCTCCTCACGGGCGGCGGACACTTCACGCAGAGCCTCCGCGTACGAAGA CATGTCAGTCAAGATTACCAGCACGTGTTTCTCACACTGGTAGGCCAAGAACTCA GCAGCAGTCAAGGCCAAACGTGGTGTGATGATTCTCTCAATAGTGGGATCGTTGG CCAGATTCAAGAACAGGCACACGTTCTCCATGGAGCCGTTCTCCTCGAAGTCCTG CTTGAAGAACCGGGCCGTCTCCATGTTCACACCCATGGCGGCGAACACGATGGC AAAGTTGTCCTCGTGGTCGTCCAGCACAGATTTGCCGGGGATCTTTACAAGACCG GCTTGCCTACAGATCTGGGCGGCAATTTCGTTGTGTGGCAGACCGGCAGCCGAG AAAATGGGGATCTTTTGCCCGCGAGCAATGGAGTTCATCACGTCGATAGCGGAGA TACCAGTCTGGATCATTTCCTCAGGGTAGATACGGGACCAGGGGTTGATGGGCT GTCCCTGGATGTGTCCAAAAAGTCTTCAGCAAGGATTGGGGGACCTTTGTCAATGGG TTTTCCAGAGCCGTTGAATACGCGACCCAACATGTCTTCGGAGACAGGGGTGC CS018 SEQ ID NO: 2096 SEQ ID NO: 2097 SEQ ID NO: 2095 CGTCCCTGTACCTG GCGTAATACGACTC CGTCCCTGTACCTGCTCAGCAATCCCAACAGCAGCAGAGTTACCGCCACGTCAG CTCAGCAATCCCA ACTATAGGCAGCGT CGAGAGCGTCGAACACAAATCCTACGGCACGCAAGGGTACACCACTTCGGAACA SEQ ID NO: 2098 CGAGGCCCCACCTT GACCAAGCAGACACAGAAGGTGGCGTACACCAACGGTTCCGACTACTCTTCCAC GCGTAATACGACTC SEQ ID NO: 2099 GGACGACTTTAAGGTGGATACGTTCGAATACAGACTCCTCCGAGAAGTTTCGTTC ACTATAGGCGTCCC CAGCGTCGAGGCCC AGGGAATCCATCACGAAGCGGTACATTGGCGAGACAGACATTCAGATCAGCACG TGTACCTGCTCAGC CACCTT GAGGTCGACAAGTCTCTCGGTGTGGTGACCCCTCCTAAGATAGCACAAAAGCCTA AATCCCA GGAATTCCAAGCTGCAGGAGGGAGCCGACGCTCAGTTTCAAGTGCAGCTGTCGG GTAACCCGCGGCCACGGGTGTCATGGTTCAAGAACGGGCAGAGGATAGTCAACT CGAACAAACACGAAATCGTCACGACACATAATCAAACAATACTTAGGGTAAGAAAC ACACAAAAGTCTGATACTGGCAACTACACGTTGTTGGCTGAAAATCCTAACGGAT GCGTCGTCACATCGGCATACCTGGCCGTGGAGTCGCCTCAAGAAACTTACGGCC AAGATCATAAATCACAATACATAATGGACAATCAGCAAACAGCTGTAGAAGAAAGA GTAGAAGTTAATGAAAAAGCTCTCGCTCCGCAATTCGTAAGAGTCTGCCAAGACC GCGATGTAACGGAGGGGAAAATGACGCGATTCGATTGCCGCGTCACGGGCAGAC CTTACCCAGAAGTCACGTGGTTCATTAACGATAGACAAATTCGAGACGATTATWAT CATAAGATATTAGTAAACGAATCGTGTAATCATGCACTTATGATTACAAACGTCGAT CTCAGTGATAGTGGCGTAGTATCATGTATAGCACGCAACAAGACCGGCGAAACTT CGTTTCAGTGTAGGCTGAACGTGATAGAGAAGGAGCAAGTGGTCGCTCCCAAATT CGTGGAGCGGTTCAGCACGCTCAACGTGCGCGAGGGCGAGCCCGTGCAGCTGC ACGCGCGCGCCGTCGGCACGCCTACGCCACGCATCACATGGCAGAAGGACGGC GTTCAAGTTATACCCAATCCAGAGCTACGAATAAATACCGAAGGTGGGGCCTCGA CGCTG -
TABLE 8-PX Target Primers Forward Primers Reverse dsRNA DNA Sequence (sense strand) ID 5′ → 3′ 5′ → 3′ 5′ → 3′ PX001 SEQ ID NO: 2340 SEQ ID NO: 2341 SEQ ID NO: 2339 GCGTAATACGACTC CTTGCCGATGATGA CGAGGTGCTGAAGATCGTGAAGCAGCGCCTCATCAAGGTGGACGGCAAGGTCCG ACTATAGGCGAGGT ACACGTTG CACCGACCCCACCTACCCGGCTGGATTCATGGATGTTGTGTCGATTGAAAAGACC GCTGAAGATCGTGA SEQ ID NO: 2343 AATGAGCTGTTCCGTCTGATCTACGATGTGAAGGGACGCTTCACCATCCACCGCA AG GCGTAATACGACTC TCACTCCCGAGGAGGCCAAGTACAAGCTGTGCAAGGTGAAGCGCGTGGCGACG SEQ ID NO: 2342 ACTATAGGCTTGCC GGCCCCAAGAACGTGCCGTACATCGTGACGCACAACGGCCGCACGCTGCGCTAC CGAGGTGCTGAAGA GATGATGAACACGT CCCGACCCGCTCATCAAGGTCAACGACTCCATCCAGCTCGACATCGCCACCTGC TCGTGAAG TG AAGATCATGGACATCATCAAGTTCGACTCAGGTAACCTGTGCATGATCACGGGAG GGCGTAACTTGGGGCGAGTGGGCACCATCGTGTCCCGCGAGAGGCACCCCGGG AGCTTCGACATCGTCCACATCAAGGACACCACCGGACACACCTTCGCCACCAGGT TGAACAACGTGTTCATCATCGGCAAG PX009 SEQ ID NO: 2345 SEQ ID NO: 2346 SEQ ID NO: 2344 GCGTAATACGACTC TGTTGATCACTATGC CAGCTACAAGTATTGGGAGAACCAGCTCATTGACTTTTTGTCAGTATACAAGAAGA ACTATAGGCAGCTA CGGTCCT AGGGTCAGACAGCGGGTGCTGGTCAGAACATCTTCAACTGTGACTTCCGCAACC CAAGTATTGGGAGA SEQ ID NO: 2348 CGCCCCCACACGGCAAGGTGTGCGACGTGGACATCCGCGGCTGGGAGCCCTGC ACCAG GCGTAATACGACTC ATTGATGAGAACCACTTCTCTTTCCACAAGTCTTCGCCTTGCATCTTCTTGAAGCT SEQ ID NO: 2347 ACTATAGGTGTTGAT GAATAAGATCTACGGCTGGCGTCCAGAGTTCTACAACGACACGGCTAACCTGCCT CAGCTACAAGTATT CACTATGCCGGTCCT GAAGCCATGCCCGTGGACTTGCAGACCCACATTCGTAACATTACTGCCTTCAACA GGGAGAACCAG GAGACTATGCGAACATGGTGTGGGTGTCGTGCCACGGCGAGACGCCGGCGGAC AAGGAGAACATCGGGCCGGTGCGCTACCTGCCCTACCCGGGCTTCCCCGGGTAC TTCTACCCGTACGAGAACGCCGAGGGGTATCTGAGCCCGCTGGTCGCCGTGCAT TTGGAGAGGCCGAGGACCGGCATAGTGATCAACA PX010 SEQ ID NO: 2350 SEQ ID NO: 2351 SEQ ID NO: 2349 GCGTAATACGACTC CTGTATCAATGTACC ACCAGCACTCTAGTGGACAACGTCGCGTTCGGGTCACCACTGTCGCGCGCAATT ACTATAGGACCAGC GCGGCAC GGGGCGACGCAGCCGCCAACTTACACCACATATCGGCGGGCTTCGACCAGGAG ACTCTAGTGGACAA SEQ ID NO: 2353 GCGGCGGCGGTGGTGATGGCGCGGCTGGTGGTGTACCGCGCGGAGCAGGAGG CGTC GCGTAATACGACTC ACGGGCCCGACGTGCTGCGCTGGCTCGACCGCATGCTCATACGCCTGTGCCAGA SEQ ID NO: 2352 ACTATAGGCTGTATC AGTTCGGCGAGTACGCGAAGGACGACCCGAACAGCTTCCGTCTGTCGGAGAACT ACCAGCACTCTAGT AATGTACCGCGGCAC TCAGCCTGTACCCGCAGTTCATGTACCACCTGCGCCGCTCGCAGTTCCTGCAGGT GGACAACGTC CTTCAACAACTCGCCCGACGAGACCACCTTCTACAGACACATGCTGATGCGCGAA GACCTGACCCAATCCCTCATCATGATCCAGCCGATCCTCTACTCGTACAGCTTCG GAGGCGCGCCCGAACCCGTGCTGTTAGACACCAGCTCCATCCAGCCCGACCGCA TCCTGCTCATGGACACCTTCTTCCAGATCCTCATCTACCATGGAGAGACAATGGC GCAATGGCGCGCTCTCCGCTACCAAGACATGGCTGAGTACGAGAACTTCAAGCA GCTGCTGCGAGCGCCCGTGGACGACGCGCAGGAGATCCTGCAGACCAGGTTCC CCGTGCCGCGGTACATTGATACAG PX015 SEQ ID NO: 2355 SEQ ID NO: 2356 SEQ ID NO: 2354 GCGTAATACGACTC GATGATGGCCGGAG GACGAGAAGATCCGCATGAACCGCGTCGTCCGGAACAACCTGCGAGTGCGCCTG ACTATAGGGACGAG AGTTCTTG TCAGACATTGTGTCCATCGCTCCTTGCCCGTCAGTGAAGTACGGCAAGAGAGTTC AAGATCCGCATGAA SEQ ID NO: 2358 ATATTCTGCCCATTGATGACTCTGTTGAGGGTTTGACTGGAAACCTGTTCGAAGTC CC GCGTAATACGACTC TACCTGAAGCCGTACTTCATGGAGGCGTACCGGCCCATCCACCGCGACGACACG SEQ ID NO: 2357 ACTATAGGGATGAT TTCATGGTGCGCGGCGGCATGCGCGCCGTCGAGTTCAAGGTGGTGGAGACCGA GACGAGAAGATCCG GGCCGGAGAGTTCT CCCCTCGCCCTACTGCATCGTGGCCCCCGACACGGTCATTCATTGTGAGGGAGA CATGAACC TG GCCGATTAAACGCGAGGAAGAAGAGGAGGCTCTCAACGCCGTCGGCTACGACGA CATCGGCGGGTGCCGCAAGCAGCTGGCGCAGATCAAGGAGATGGTGGAGCTGC CGCTGCGCCACCCCTCGCTGTTCAAGGCCATCGGGGTCAAGCCGCCGCGGGGG ATACTGATGTACGGGCCCCCGGGGACGGGGAAGACCTTGATCGCTAGGGCTGTC GCTAATGAGACGGGCGCATTCTTCTTCCTCATCAACGGCCCCGAGATCATGTCGA AACTCGCCGGTGAATCCGAGTCGAACCTGCGCAAGGCGTTCGAGGAGGCGGACA AGAACTCTCCGGCCATCATC PX016 SEQ ID NO: 2360 SEQ ID NO: 2361 SEQ ID NO: 2359 GCGTAATACGACTC AGTGATGTACCCGG CTGGGTCGTATTTTCAACGGCTCCGGCAAGCCCATCGACAAGGGGCCCCCGATC ACTATAGGCTGGGT TCAAGTCG CTGGCCGAGGAGTACCTGGACATCCAGGGGCAGCCCATCAACCCGTGGTCCCGT CGTATTTTCAACGG SEQ ID NO: 2363 ATCTACCCGGAGGAGATGATCCAGACTGGTATCTCCGCTATCGACGTGATGAACT CTC GCGTAATACGACTC CCATCGCCCGTGGTCAGAAGATCCCCATCTTCTCCGCCGCCGGTCTGCCCCACA SEQ ID NO: 2362 ACTATAGGAGTGAT ACGAGATTGCTGCTCAGATCTGTAGGCAGGCTGGTCTTGTCAAGGTCCCCGGAAA CTGGGTCGTATTTTC GTACCCGGTCAAGT ATCCGTGTTGGACGACCACGAAGACAACTTCGCCATCGTGTTCGCCGCCATGGG AACGGCTC CG AGTCAACATGGAGACCGCCAGGTTCTTCAAGCAGGACTTCGAGGAGAACGGTTC CATGGAGAACGTCTGTCTGTTCTTGAACTTGGCCAATGACCCGACCATTGAGAGG ATTATCACGCCGAGGTTGGCGCTGACTGCTGCCGAGTTCTTGGCCTACCAGTGC GAGAAACACGTGTTGGTAATCTTGACCGACATGTCTTCATACGCGGAGGCTCTTC GTGAAGTGTCAGCCGCCCGTGAGGAGGTGCCCGGACGACGTGGTTTCCCAGGTT ACATGTACACGGATTTGGCCACAATCTACGAGCGCGCCGGGCGAGTCGAGGGCC GCAACGGCTCCATCACGCAGATCCCCATCCTGACCATGCCCAACGACGACATCA CCCACCCCATCCCCGACTTGACCGGGTACATCACT -
TABLE 8-AD Target Primers Forward Primers Reverse dsRNA DNA Sequence (sense strand) ID 5′ → 3′ 5′ → 3′ 5′ → 3′ AD001 SEQ ID NO: 2462 SEQ ID NO: 2463 SEQ ID NO: 2461 GCGTAATACGACTC CAATATCAAACGAG GCTCCTAAAGCATGGATGTTGGACAAACTCGGAGGAGTATTCGCTCCTCGCCCCAG ACTATAGGGCTCCT CCTGGGTG TACTGGCCCCCACAAATTGCGTGAATGTTTACCTTTGGTGATTTTTCTTCGCAATCG AAAGCATGGATGTT SEQ ID NO: 2465 GCTCAAGTATGCTCTGACGAACTGTGAAGTAACGAAGATTGTTATGCAGCGACTTAT GG GCGTAATACGACTC CAAAGTTGACGGCAAGGTGCGAACCGATCCGAATTATCCCGCTGGTTTCATGGATG SEQ ID NO: 2464 ACTATAGGCAATATC TTGTCACCATTGAGAAGACTGGAGAGTTCTTCAGGCTGGTGTATGATGTGAAAGGC GCTCCTAAAGCATG AAACGAGCCTGGGTG CGTTTCACAATTCACAGAATTAGTGCAGAAGAAGCCAAGTACAAGCTCTGCAAGGTC GATGTTGG AGGAGAGTTCAAACTGGGCCAAAAGGTATTCCATTCTTGGTGACCCATGATGGCCG TACTATCCGTTATCCTGACCCAGTCATTAAAGTTAATGACTCAATCCAATTGGATATT GCCACTTGTAAAATCATGGACCACATCAGATTTGAATCTGGCAACCTGTGTATGATT ACTGGTGGACGTAACTTGGGTCGAGTGGGGACTGTTGTGAGTCGAGAACGTCACC CAGGCTCGTTTGATATTG AD002 SEQ ID NO: 2467 SEQ ID NO: 2468 SEQ ID NO: 2466 GCGTAATACGACTC CATCCATGTGCTGA GAAGAAAGATGGAAAGGCTCCGACCACTGGTGAGGCCATTCAGAAACTCAGAGAAA ACTATAGGGAAGAA TGAGCTGC CAGAAGAAATGTTAATCAAAAAGCAGGAATTTTTAGAGAAGAAAATCGAACAAGAAA AGATGGAAAGGCTC SEQ ID NO: 2470 TCAATGTTGCAAAGAAAAATGGAACGAAAAATAAGCGAGCTGCTATTCAGGCTCTGA CGAC GCGTAATACGACTC AAAGGAAAAAGAGGTATGAAAAACAATTGCAGCAAATTGATGGCACCTTATCCACAA SEQ ID NO: 2469 ACTATAGGCATCCAT TTGAAATGCAAAGAGAAGCTTTGGAGGGTGCTAATACTAATACAGCTGTATTACAAA GAAGAAAGATGGAA GTGCTGATGAGCTGC CAATGAAATCAGCAGCAGATGCCCTTAAAGCAGCTCATCAGCACATGGATG AGGCTCCGAC AD009 SEQ ID NO: 2472 SEQ ID NO: 2473 SEQ ID NO: 2471 GCGTAATACGACTC CGTGTTCATCTCCCT GTCTTCTTCCAGACACTGGATCCTCGTATTCCCACCTGGCAGTTAGATTCTTCTATC ACTATAGGGTCTTCT CGAGTTG ATTGGCACATCACCTGGCCTAGGTTTCCGGCCAATGCCAGAAGATAGCAATGTAGA TCCAGACACTGGAT SEQ ID NO: 2475 GTCAACTCTCATCTGGTACCGTGGAACAGATCGTGATGACTTCCGTCAGTGGACAG CCTC GCGTAATACGACTC ACACCCTTGATGAATTTCTTGCTGTGTACAAGACTCCTGGTCTGACCCCTGGTCGAG SEQ ID NO: 2474 ACTATAGGCGTGTT GTCAGAACATCCACAACTGTGACTATGATAAGCCGCCAAAGAAAGGCCAAGTTTGC GTCTTCTTCCAGACA CATCTCCCTCGAGT AATGTGGACATCAAGAATTGGCATCCCTGCATrCAAGAGAATCACTACAACTACCAC CTGGATCCTC TG AAGAGCTCTCCATGCATATTCATCAAGCTCAACAAGATCTACAATTGGATCCCTGAA TACTACAATGAGAGTACGAATTTGCCTGAGCAGATGCCAGAAGACCTGAAGCAGTA CATCCACAACCTGGAGAGTAACAACTCGAGGGAGATGAACACG AD015 SEQ ID NO: 2477 SEQ ID NO: 2478 SEQ ID NO: 2476 GCGTAATACGACTC AGAATTTCAAGGCG GTTGAAGGACTAACCGGGAATTTGTTTGAGGTGTACTTAAAACCGTACTTTCTCGAA ACTATAGGGTTGAA ACCAGTGG GCATACCGACCCATTCACAAAGATGATGCGTTTATTGTTCGTGGTGGTATGCGAGCA GGACTAACCGGGAA SEQ ID NO: 2480 GTAGAATTCAAAGTAGTGGAAACAGATCCTTCACCATATTGTATTGTTGCTCCTGATA TTTG GCGTAATACGACTC CTGTTATTCACTGTGAAGGTGATCCAATAAAACGTGAAGAGGAAGAAGAAGCATTAA SEQ ID NO: 2479 ACTATAGGAGAATTT ATGCTGTTGGTTATGATGACATTGGGGGTTGCCGAAAACAGCTAGCACAGATCAAG GTTGAAGGACTAAC CAAGGCGACCAGTGG GAAATGGTGGAATTGCCATTACGGCACCCCAGTCTCTTTAAGGCTATTGGTGTTAAG CGGGAATTTG CCACCGAGGGGAATACTGCTGTATGGACCCCCTGGAACTGGTAAAACCCTCATTGC CAGGGCTGTGGCTAATGAAACTGGTGCATTCTTCTTTTTAATAAATGGTCCTGAAATT ATGAGCAAGCTTGCTGGTGAATCTGAAAGCAACTTACGTAAGGCATTTGAAGAAGCT GATAAGAATGCTCCGGCAATTATATTTATTGATGAACTAGATGCAATTGCCCCTAAAA GAGAAAAAACTCATGGAGAGGTGGAACGTCGCATAGTTTCACAACTACTAACTTTAA TGGATGGTCTGAAGCAAAGTTCACATGTTATTGTTATGGCTGCCACAAATAGACCCA ACTCTATTGATGGTGCCTTGCGCCGCTTTGGCAGATTTGATAGGGAAAGATATTG GTATACCAGATGCCACTGGTCGCCTTGAAATTCT AD016 SEQ ID NO: 2482 SEQ ID NO: 2483 SEQ ID NO: 2481 GCGTAATACGACTC ATGTAGCCTGGGAA ACCCGGAAGAAATGATCCAGACGGGGATCTCGACCATCGACGTGATGACGTCCATC ACTATAGGACCCGG GCCTCTTC GCGCGAGGGCAGAAGATCCCCATCTTCTCGGGCGCAGGGCTGCCACACAACGAGA AAGAAATGATCCAG SEQ ID NO: 2485 TCGCTGCGCAGATCTGCCGACAGGCGGGGCTGGTGCAGCACAAGGAGAACAAGGA AC GCGTAATACGACTC CGACTTCGCCATCGTGTTCGCGGCGATGGGCGTCAACATGGAGACGGCGCGCTTC SEQ ID NO: 2484 ACTATAGGATGTAG TTCAAGCGCGAGTTCGCGCAGACGGGCGCGTGCAACGTGGTGCTGTTCCTCAACC ACCCGGAAGAAATG CCTGGGAAGCCTCT TGGCCAACGACCCCACCATCGAGCGCATCATCACCCCGCGCCTCGCGCTCACCGT ATCCAGAC TC GGCCGAGTTCCTGGCCTACCAGTGCAACAAGCACGTGCTCGTCATCATGACCGACA TGACCTCCTACGCGGAGGCGCTGCGCGAGGTGAGCGCGGCGCGCGAGGAGGTTC CTGGGCGAAGAGGCTTCCCAGGCTACAT -
TABLE 9-LD Hairpin Sequence Target ID 5′ → 3′ LD002 SEQIDNO: 240 GCCCTTGCAATGTCATCCATCATGTCGTGTACATTGTCCACGTCCAAGTTTATGGGCTTTCTTAAGAGCTTCAGCTGCATTTTTCAT AGATTCCAATACTGTGGTGTTCGTACTAGCTCCCTCCAGAGCTTCTCGTTGAAGTTCAATAGTAGTTAAAGTGCCATCTATTTGCAACT GATTTTTTTCTAATCGCTTCTTCCGCTTCAGCGCTTGCATGGCCGCTCAAGGGCGAATTCACCAGCTTTCTTGTACAAAGTGGTATATC ACTAGTGCGGCCGCCTGCAGGTCGACCATATGGTCGACCTGCAGGCGGCCGCACTAGTGATGCTGTTATGTTCAGTGTCAAGCTGA CCTGCAAACACGTTAAATGCTAAGAAGTTAGAATATATGAGACACGTTAACTGGTATATGAATAAGCTGTAAATAACCGAGTATAAACT CATTAACTAATATCACCTCTAGAGTATAATATAATCAAATTCGACAATTTGACTTTCAAGAGTAGGCTAATGTAAAATCTTTATATATTTC TACAATGTTCAAAGAAACAGTTGCATCTAAACCCCTATGGCCATCAAATTCAATGAACGCTAAGCTGATCCGGCGAGATTTTCAGGAG CTAAGGAAGCTAAAATGGAGAAAAAAATCACTGGATATACCACCGTTGATATATCCCAATGGCATCGTAAAGAACATTTTGAGGCATTT CAGTCAGTTGCTCAATGTACCTATAACCAGACCGTTCAGCTGGATATTACGGCCTTTTTAAAGACCGTAAAGAAAAATAAGCACAAGTT TTATCCGGCCTTTATTCACATTCTTGCCCGCCTGATGAATGCTCATCCGGAATTCCGTATGGCAATGAAAGACGGTGAGCTGGTGATA TGGGATAGTGTTCACCCTTGTTACACCGTTTTCCATGAGCAAACTGAAACGTTTTCATCGCTCTGGAGTGAATACCACGACGATTTCC GGCAGTTTCTACACATATATTCGCAAGATGTGGCGTGTTACGGTGAAAACCTGGCCTTTCCCTAAAGGGTTTATTGAGAATATGTTT TTCGTCTCAGCCAATCCCTGGGTGAGTTTCACCAGTTTTGATTTAAACGTGGCCAATATGGACAACTTCTTCGCCCCCGTTTTCACCAT GGGCAAATATTATACGCAAGGCGACAAGGTGCTGATGCCGCTGGCGATTCAGGTTCATCATGCCGTCTGTGATGGCTTCCATGTCGG CAGAATGCTTAATGAATTACAACAGTACTGCGATGAGTGGCAGGGCGGGGCGTAAACGCGTGGATCAGCTTAATATGACTCTCAATA AAGTCTCATACCAACAAGTGCCACCTTATTCAACCATCAAGAAAAAAGCCAAAATTTATGCTACTCTAAGGAAAACTTCACTAAAGAAG ACGATTTAGAGTGTTTTACCAAGAATTTCTGTCATCTTACTAAACAACTAAAGATCGGTGTGATACAAAACCTAATCTCATTAAAGTTTA TGCTAAAATAAGCATAATTTTACCCACTAAGCGTGACCAGATAAACATAACTCAGCACACCAGAGCATATATATTGGTGGCTCAAATCA TAGAAACTTACAGTGAAGACACAGAAAGCCGTAAGAAGAGGCAAGAGTATGAAACCTTACCTCATCATTTCCATGAGGTTGCTTCTGA TCCCGCGGGATATCACCACTTTGTACAAGAAAGCTGGGTCGAATTCGCCCTTGAGCGGCCATGCAAGCGCTGAAGCGGAAGAAGCG ATTAGAAAAAAATCAGTTGCAAATAGATGGCACTTTAACTACTATTGAACTTCAACGAGAAGCTCTGGAGGGAGCTAGTACGAACACC ACAGTATTGGAATCTATGAAAAATGCAGCTGAAGCTCTTAAGAAAGCCCATAAAAACTTGGACGTGGACAATGTACACGACATGATGG ATGACATTGCAAGGGC LD006 SEQIDNO: 241 GCCCTTGGAGCGAGACTACAACAACTATGGCTGGCAGGTGTTGGTTGCTTCTGGTGTGGTGGAATACATCGACACTCTTGAAGAAGA AACTGTCATGATTGCGATGAATCCTGAGGATCTTCGGCAGGACAAAGAATATGCTTATTGTACGACCTACACCCACTGCGAAATCCAC CCGGCCATGATCTTGGGCGTTTGCGCGTCTATTATACCTTTCCCCGATCATAACCAGAGCCCAAGGAACACCTACCAGAGCGCTATG GGTAAGCAAGCTATGGGGGTCTACATTACGAATTTCCACGTGCGGATGGACACCCTGGCCCACGTGCTATACTACCCGCACAAACCT CTGGTCACTACCAGGTCTATGGAGTATCTGCGGTTCAGAGAATTACCAGCCGGGATCAACAGTATAGTTGCTATTGCTTGTTATACTG GTTATAATCAAGAAGATTCTGTTATTCTGAACGCGTCTGCTGTGGAAAGAGGATTTTTCCGATCCGTGTTTTATCGTTCCTATAAAGAT GCCGAATCGAAGCGAATTGGCGATCAAGAAGAGCAGTTCGAGAAGGGCGAATTCACCAGCTTTCTTGTACAAAGTGGTATATCACTA GTGCGGCCGCCTGCAGGTCGACCATATGGTCGACCTGCAGGCGGCCGCACTAGTGATGCTGTTATGTTCAGTGTGAAGCTGACCTG CAAACACGTTAAATGCTAAGAAGTTAGAATATATGAGACACGTTAACTGGTATATGAATAAGCTGTAAATAACCGAGTATAAACTCATT AACTAATATCACCTCTAGAGTATAATATAATCAAATTCGACAATTTGACTTTCAAGAGTAGGCTAATGTAAAATCTTTATATATTTCTACA ATGTTCAAAGAAACAGTTGCATCTAAACCCCTATGGCCATCAAATTCAATGAACGCTAAGCTGATCCGGCGAGATTTTCAGGAGCTAA GGAAGCTAAAATGGAGAAAAAAATCACTGGATATACCACCGTTGATATATCCCAATGGCATCGTAAAGAACATTTTGAGGCATTTCAGT CAGTTGCTCAATGTACCTATAACCAGACCGTTCAGCTGGATATTACGGCCTTTTTAAAGACCGTAAAGAAAAATAAGCACAAGTTTTAT CCGGCCTTTATTCACATTCTTGCCCGCCTGATGAATGCTCATCCGGAATTCCGTATGGCAATGAAAGACGGTGAGCTGGTGATATGG GATAGTGTTCACCCTTGTTACACCGTTTTCCATGAGCAAACTGAAACGTTTTCATCGCTCTGGAGTGAATACCACGACGATTTCCGGC AGTTTCTACACATATATTCGGAAGATGTGGCGTGTTACGGTGAAAACCTGGCCTATTTCCCTAAAGGGTTTATTGAGAATATGTTTTTC GTCTCAGCCAATCCCTGGGTGAGTTTCACCAGTTTTGATTTAAACGTGGCCAATATGGACAACTTCTTCGCCCCCGTTTTCACCATGG GCAAATATTATACGCAAGGCGACAAGGTGCTGATGCCGCTGGCGATTCAGGTTCATCATGCCGTCTGTGATGGCTTCCATGTCGGCA GAATGCTTAATGAATTACAACAGTACTGCGATGAGTGGCAGGGCGGGGCGTAAACGCGTGGATCAGCTTAATATGACTCTCAATAAA GTCTCATACCAACAAGTGCCACCTTATTCAACCATCAAGAAAAAAGCCAAAATTTATGCTACTCTAAGGAAAACTTCACTAAAGAAGAC GATTTAGAGTGTTTTACCAAGAATTTCTGTCATCTTACTAAACAACTAAAGATCGGTGTGATACAAAACCTAATCTCATTAAAGTTTATG CTAAAATAAGCATAATTTTACCCACTAAGCGTGACCAGATAAACATAACTCAGCACACCAGAGCATATATATTGGTGGCTCAAATCATA GAAACTTACAGTGAAGACACAGAAAGCCGTAAGAAGAGGCAAGAGTATGAAACCTTACCTCATCATTTCCATGAGGTTGCTTCTGATC CCGCGGGATATCACCACTTTGTACAAGAAAGCTGGGTCGGCCCTTCTCGAACTGCTCTTCTTGATCGCCAATTCGCTTCGATTCGGC ATCTTTATAGGAACGATAAAACACGGATCGGAAAAATCCTCTTTCCACAGCAGACGCGTTCAGAATAACAGAATCTTCTTGATTATAAC CAGTATAACAAGCAATAGCAACTATACTGTTGATCCCGGCTGGTAATTCTCTGAACCGCAGATACTCCATAGACCTGGTAGTGACCAG AGGTTTGTGCGGGTAGTATAGCACGTGGGCCAGGGTGTCCATCCGCACGTGGAAATTCGTAATGTAGACCCCCATAGCTTGCTTACC CATAGCGCTCTGGTAGGTGTTCCTTGGGCTCTGGTTATGATCGGGGAAAGGTATAATAGACGCGCAAACGCCCAAGATCATGGCCG GGTGGATTTCGCAGTGGGTGTAGGTCGTACAATAAGCATATTCTTTGTCCTGCCGAAGATCCTCAGGATTCATCGCAATCATGACAGT TTCTTCTTCAAGAGTGTCGATGTATTCCACCACACCAGAAGCAACCAACACCTGCCAGCCATAGTTGTTGTAGTCTCGCTCCAAGGGC LD007 SEQIDNO: 242 GCCCTTCCGAAGAAGGATGTGAAGGGTACTTACGTATCCATACACAGTTCAGGCTTCAGAGATTTTTTATTGAAACCAGAAATTCTAA GAGCTATAGTTGACTGCGGTTTTGAACACCCTTCAGAAGTTCAGCACGAATGTATTCCTCAAGCTGTCATTGGCATGGACATTTTATGT CAAGCCAAATCTGGTATGGGCAAAACGGCAGTGTTTGTTCTGGCGACACTGCAACAATTGGAACCAGCGGACAATGTTGTTTACGTTT TGGTGATGTGTCACACTCGTGAACTGGCTTTCCAAATCAGCAAAGAGTACGAGAGGTTCAGTAAATATATGCCCAGTGTCAAGGTGG GCGTCTTTTTCGGAGGAATGCCTATTGCTAACGATGAAGAAGTATTGAAAAACAAATGTCCACACATTGTTGTGGGGACGCCTGGGC GTATTTTGGCGCTTGTCAAGTCTAGGAAGCTAGTCCTCAAGAACCTGAAACACTTCATTCTTGATGAGTGCGATAAAATGTTAGAACTG TTGGATATGAGGAGAGACGTCCAGGAAATCTACAGAAACACCCCTCACACCAAGCAAGTGATGATGTTCAGTGCCACACTCAGCAAA GAAATCAGGCCGGTGTGCAAGAAATTCATGCAAGATCCAATGGAGGTGTATGTAGACGATGAAGCCAAATTGACGTTGCACGGATTA CAACAGCATTACGTTAAACTCAAAGAAAATGAAAAGAATAAAAAATTATTTGAGTTGCTCGATGTTCTCGAATTTAATCAGGTGGTCATT TTTGTGAAGTCCGTTCAAAGGTGTGTGGCTTTGGCACAGTTGCTGACTGAACAGAATTTCCCAGCCATAGGAATTCACAGAGGAATG GACCAGAAAGAGAGGTTGTCTCGGTATGAGCAGTTCAAAGATTTCCAGAAGAGAATATTGGTAGCTACGAATCTCTTTGGGCGTGGC ATGGACATTGAAAGGGTCAACATTGTCTTCAACTATGATATGCCAGAGGACTCCGACACCTACTTGCATCGAAGGGCGAATTCACCAG CTTTCTTGTACAAAGTGGTATATCACTAGTGCGGCCGCCTGCAGGTCGACCATATGGTCGACCTGCAGGCGGCCGCACTAGTGATGC TGTTATGTTCAGTGCAAGCTGACCTGCAAACACGTTAAATGCTAAGAAGTTAGAATATATGAGACACGTTAACTGGTATATGAATAAG CTGTAAATAACCGAGTATAAACTCATTAACTAATATCACCTCTAGAGTATAATATAATCAAATTCGACAATTTGACTTTCAAGAGTAGGC TAATGTAAAATCTTTATATATTTCTACAATGTTCAAAGAAACAGTTGCATCTAAACCCCTATGGCCATCAAATTCAATGAACGCTAAGCT GATCCGGCGAGATTTTCAGGAGCTAAGGAAGCTAAAATGGAGAAAAAAATCACTGGATATACCACCGTTGATATATCCCAATGGCATC GTAAAGAACATTTTGAGGCATTTCAGTCAGTTGCTCAATGTACCTATAACCAGACCGTTCAGCTGGATATTACGGCCTTTTTAAAGACC GTAAAGAAAAATAAGCACAAGTTTTATCCGGCCTTTATTCACATTCTTGCCCGCCTGATGAATGCTCATCCGGAATTCCGTATGGCAAT GAAAGACGGTGAGCTGGTGATATGGGATAGTGTTCACCCTTGTTACACCGTTTTCCATGAGCAAACTGAAACGTTTTCATCGCTCTGG AGTGAATACCACGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGATGTGGCGTGTTACGGTGAAAACCTGGCCTATTTCCCTA AAGGGTTTATTGAGAATATGTTTTTCGTCTCAGCCAATCCCTGGGTGAGTTTCACCAGTTTTGATTTAAACGTGGCCAATATGGACAAC TTCTTCGCCCCCGTTTTCACCATGGGCAAATATTATACGCAAGGCGACAAGGTGCTGATGCCGCTGGCGATTCAGGTTCATCATGCC GTCTGTGATGGCTTCCATGTCGGCAGAATGCTTAATGAATTACAACAGTACTGCGATGAGTGGCAGGGCGGGGCGTAAACGCGTGG ATCAGCTTAATATGACTCTCAATAAAGTCTCATACCAACAAGTGCCACCTTATTCAACCATCAAGAAAAAAGCCAAAATTTATGCTACTC TAAGGAAAACTTCACTAAAGAAGACGATTTAGAGTGTTTTACCAAGAATTTCTGTCATCTTACTAAACAACTAAAGATCGGTGTGATAC AAAACCTAATCTCATTAAAGTTTATGCTAAAATAAGCATAATTTTACCCACTAAGCGTGACCAGATAAACATAACTCAGCACACCAGAG CATATATATTGGTGGCTCAAATCATAGAAACTTACAGTGAAGACACAGAAAGCCGTAAGAAGAGGCAAGAGTATGAAACCTTACCTCA TCATTTCCATGAGGTTGCTTCTGATCCCGCGGGATATCGACCACTTTGTACAAGAAAGCTGGGTCGAATTCGCCCTTCGATGCAAGTA GGTGTCGGAGTCCTCTGGCATATCATAGTTGAAGACAATGTTGACCCTTTCAATGTCCATGCCACGCCCAAAGAGATTCGTAGCTACC AATATTCTCTTCTGGAAATCTTTGAACTGCTCATACCGAGACAACCTCTCTTTCTGGTCCATTCCTCTGTGAATTCCTATGGCTGGGAA ATTCTGTTCAGTCAGCAACTGTGCCAAAGCCACACACCTTTGAACGGACTTCACAAAAATGACCACCTGATTAAATTCGAGAACATCG AGCAACTCAAATAATTTTTTATTCTTTTCATTTTCTTTGAGTTTAACGTAATGCTGTTGTAATCCGTGCAACGTCAATTTGGCTTCATCGT CTACATACACCTCCATTGGATCTTGCATGAATTTCTTGCACACCGGCCTGATTTCTTTGCTGAGTGTGGCACTGAACATCATCACTTGC TTGGTGTGAGGGGTGTTTCTGTAGATTTCCTGGACGTCTCTCCTCATATCCAACAGTTCTAACATTTTATCGCACTCATCAAGAATGAA GTGTTTCAGGTTCTTGAGGACTAGCTTCCTAGACTTGACAAGCGCCAAAATACGCCCAGGCGTCCCCACAACAATGTGTGGACATTT GTTTTTCAATACTTCTTCATCGTTAGCAATAGGCATTCCTCCGAAAAAGACGCCCACCTTGACACTGGGCATATATTTACTGAACCTCT CGTACTCTTTGCTGATTTGGAAAGCCAGTTCACGAGTGTGACACATCACCAAAACGTAAACAACATTGTCCGCTGGTTCCAATTGTTG CAGTGTCGCCAGAACAAACACTGCCGTTTTGCCCATACCAGATTTGGCTTGACATAAAATGTCCATGCCAATGACAGCTTGAGGAATA CATTCGTGCTGAACTTCTGAAGGGTGTTCAAAACCGCAGTCAACTATAGCTCTTAGAATTTCTGGTTTCAATAAAAAATCTCTGAAGCC TGAACTGTGTATGGATACGTAAGTACCCTTCACATCCTTCTTCGGAAGGGC LD010 SEQIDNO: 243 GCCCTTCGCCATTGGGCGATGGTTTCGCCATGGAATATCAGAATCTGGAAGAACGTGTCCATGAGCAGAATTCTATCGGGTTGGATG GAACTCGTATCCAAAAGCACAGGTTCTGGTGGTCCATTGAAACTGTAGCTGTAGAGTATCGGCTGGATCATGATCAGCGACTGCGTG AGGTCTTCGCGCATAAGCATGTGCCTGTAGAAGGACGTTTCGTCGGGAGAATTGTTAAACACCTGCAGGAACTGTGACCTTCTCAAA TGGTACATGAACTGCGGGTAGAGGCTGAAGTTTTCGCCCAAGCGGAACGAATTCGGGTCGTCCTTGTTATATTCGCCGAATTTCTGG CACAGACGTATCAACATCCTATCGACCCATCTCAAAACATCAGGGCTATCGTCTGATTCCGCTCTGTAAACTGCCATCCTCGCCATTA TCACTGCGGCTGCCTCCTGATCGAATCCAGCACTGACATGATGTATATTAGCGGAAGCATCGGCCCAGTTTCTAGCAACTGTCGTTA CTCGGATCCTCTTCTGGCCACTAGCATGCTGATATTGCGTGATGAACTGTATGCAGCCCCTTCCCCCTTGAGGTATGGGAGCGGAAT GTTGGTTGACGACCTCGAAGAACAAGGCCATGGTAGTACTTGGAGTTACCGTACACATTTTCCACTGGACCGTGTTACCCATTCCTAT TTCGGTGTCGGAAACCAAAGGATTCTTCACATTCAACGAAACACAAGATCCAATACCGCCTTGAATTTTCAACTCCCTGGAACACTTG ACCCTCCAGAGTACCATTAAATGCCATCTTCAGCTCGTTTTCTGATCTTTCGAAAATATGCGCTGGAACGTTTGCTTGAACAGGGAA GAATTGAACGAGTCGCCCATGACCATATGTCCCCCTGTTGAATTACAACACTGTTTCATCTCCATCAATCCTGTCTGATCCAAAGCGC ATGAATATATGTCAACGCAGTGGCCATTCGTTGCTGCTCTCATCGCTAAATTATCATAGTGCTTGATTGCTTTCTTCATGTATTTGGCAT TGTCTTTTTGGATGTCGTGGTGAGATCTGATAGGTTGCTTCAGATCATCATTCAAGACTTGACCAGGGCCTTGAGAGCAAGGTCCTCC AACGAATAGCATGACCCTGGCACCAGTATTGGCGTATGTGCACTCCAACAACCCAATGGCTATCGATAAAGCTGTCCCGGTCGATCT AAGGGCGCATTTGCCTTGGTGGACAGGCCATGGGTCTCTTTGCAACTCTCCAATAAGATCAGTGAGGTTCATGTCGCATTTCGAGAT GGGTTGAAGGAACCTGCTTCCTGGTGGCGTAGGAGCTTGCTGGAGTGCTCCAGGCCTCATGGGTTGTCCTGGTTGTTGAGGAGCAG GTTGAGCACTTACTGCGGCTCTGCCCACTTCCAACATCTCTTGAACTTGCTTAGCTGTGAGGTCTTTCGTCCCTCGGAAAACGTAAGA TTTGCTGCAGCCCTCGGTACCTAGTTCGTGCACTTGGACCATCTTCCCAAAGGTAATCAACCCTATCAAGGCATTCGGGGGCAACAA GCTCAAAGACATCTGCAACGAATCCTTGAGAGAAGGGCGAATTCACCAGCTTTCTTGTACAAAGTGGTATATCACTAGTGCGGCCGC CTGCAGGTCGACCATATGGTCGACCTGCAGGCGGCCGCACTAGTGATGCTGTTATGTTCAGTGTCAAGCTGACCTGCAAACACGTTA AATGCTAAGAAGTTAGAATATATGAGACACGTTAACTGGTATATGAATAAGCTGTAAATAACCGAGTATAAACTCATTAACTAATATCAC CTCTAGAGTATAATATAATCAAATTCGACAATTTGACTTTCAAGAGTAGGCTAATGTAAAATCTTTATATATTTCTACAATGTTCAAAGAA ACAGTTGCATCTAAACCCCTATGGCCATCAAATTCAATGAACGCTAAGCTGATCCGGCGAGATTTTCAGGAGCTAAGGAAGCTAAAAT GGAGAAAAAAATCACTGGATATACCACCGTTGATATATCCCAATGGCATCGTAAAGAACATTTTGAGGCATTTCAGTCAGTTGCTCAAT GTACCTATAACCAGACCGTTCAGCTGGATATTACGGCCTTTTTAAAGACCGTAAAGAAAAATAAGCACAAGTTTTATCCGGCCTTTATT CACATTCTTGCCCGCCTGATGAATGCTCATCCGGAATTCCGTATGGCAATGAAAGACGGTGAGCTGGTGATATGGGATAGTGTTCAC CCTTGTTACACCGTTTTCCATGAGCAAACTGAAACGTTTTCATCGCTCTGGAGTGAATACCACGACGATTTCCGGCAGTTTCTACACAT ATATTCGCAAGATGTGGCGTGTTACGGTGAAAACCTGGCCTATTTCCCTAAAGGGTTTATTGAGAATATGTTTTTCGTCTCAGCCAATC CCTGGGTGAGTTTCACCAGTTTTGATTTAAACGTGGCCAATATGGACAACTTCTTCGCCCCCGTTTTCACCATGGGCAAATATTATAC GCAAGGCGACAAGGTGCTGATGCCGCTGGCGATTCAGGTTCATCATGCCGTCTGTGATGGCTTCCATGTCGGCAGAATGCTTAATGA ATTACAACAGTACTGCGATGAGTGGCAGGGCGGGGCGTAAACGCGTGGATCAGCTTAATATGACTCTCAATAAAGTCTCATACCAAC AAGTGCCACCTTATTCAACCATCAAGAAAAAAGCCAAAATTTATGCTACTCTAAGGAAAACTTCACTAAAGAAGACGATTTAGAGTGTT TTACCAAGAATTTCTGTCATCTTACTAAACAACTAAAGATCGGTGTGATACAAAACCTAATCTCATTAAAGTTTATGCTAAAATAAGCAT AATTTTACCCACTAAGCGTGACCAGATAAACATAACTCAGCACACCAGAGCATATATATTGGTGGCTCAAATCATAGAAACTTACAGTG AAGACACAGAAAGCCGTAAGAAGAGGCAAGAGTATGAAACCTTACCTCATCATTTCCATGAGGTTGCTTCTGATCCCGCGGGATATC GACCACTTTGTACAAGAAAGCTGGTCGAATTCGCCCTTCTCTCAAGGATTCGTTGCAGATGTCTTTGAGCTTGTTGCCCCCGAATGCC TTGATAGGGTTGATTACCTTTGGGAAGATGGTCCAAGTGCACGAACTAGGTACCGAGGGCTGCAGCAAATCTTACGTTTTCCGAGGG ACGAAAGACCTCACAGCTAAGCAAGTTCAAGAGATGTTGGAAGTGGGCAGAGCCGCAGTAAGTGCTCAACCTGCTCCTCAACAACCA GGACAACCCATGAGGCCTGGAGCACTCCAGCAAGCTCCTACGCCACCAGGAAGCAGGTTCCTTCAACCCATCTCGAAATGCGACAT GAACCTCACTGATCTTATTGGAGAGTTGCAAAGAGACCCATGGCCTGTCCACCAAGGCAAATGCGCCCTTAGATCGACCGGGACAGC TTTATCGATAGCCATTGGGTTGTTGGAGTGCACATACGCCAATACTGGTGCCAGGGTCATGCTATTCGTTGGAGGACCTTGCTCTCAA GGCCCTGGTCAAGTCTTGAATGATGATCTGAAGCAACCTATCAGATCTCACCACGACATCCAAAAAGACAATGCCAAATACATGAAGA AAGCAATCAAGCACTATGATAATTTAGCGATGAGAGCAGCAACGAATGGCCACTGCGTTGACATATATTCATGCGCTTTGGATCAGAC AGGATTGATGGAGATGAAACAGTGTTGTAATTCAACAGGGGGACATATGGTCATGGGCGACTCGTTCAATTCTTCCCTGTTCAAGCAA ACGTTCCAGCGCATATTTTCGAAAGATCAGAAAAACGAGCTGAAGATGGCATTTAATGGTACTCTGGAGGGTCAAGTGTTCCAGGGA GTTGAAAATTCAAGGCGGTATTGGATCTTGTGTTTCGTTGAATGTGAAGAATCCTTTGGTTTCCGACACCGAAATAGGAATGGGTAAC ACGGTCCAGTGGAAAATGTGTACGGTAACTCCAAGTACTACCATGGCCTTGTTCTTCGAGGTCGTCAACCAACATTCCGCTCCCATAC CTCAAGGGGGAAGGGGCTGCATACAGTTCATCACGCAATATCAGCATGCTAGTGGCCAGAAGAGGATCCGAGTAACGACAGTTGCT AGAAACTGGGCCGATGCTTCCGCTAATATACATCATGTCAGTGCTGGATTCGATCAGGAGGCAGCCGCAGTGATAATGGCGAGGATG GCAGTTTACAGAGCGGAATCAGACGATAGCCCTGATGTTTTGAGATGGGTCGATAGGATGTTGATACGTCTGTGCCAGAAATTCGGC GAATATAACAAGGACGACCCGAATTCGTTCCGCTTGGGCGAAAACTTCAGCCTCTACCCGCAGTTCATGTACCATTTGAGAAGGTCA CAGTTCCTGCAGGTGTTTAACAATTCTCCCGACGAAACGTCCTTCTACAGGCACATGCTTATGCGCGAAGACCTCACGCAGTCGCTG ATCATGATCCAGCCGATACTCTACAGCTACAGTTTCAATGGACCACCAGAACCTGTGCTTTTGGATACGAGTTCCATCCAACCCGATA GAATTCTGCTCATGGACACGTTCTTCCAGATTCTGATATTCCATGGCGAAACCATCGCCCAATGGCGAAGGGC LD011 SEQ ID NO: 244 GCCCTTGTGGAAGCAGGGCTGGCATGGCGACAAATTCTAGATTGGGATCACCAATAAGCTTCCTAGCTAGCCATAGGAAAGGCTTCT CAAAGTTGTAGTTAGATTTGGCAGAGATATCATAGTACTGCAAATTCTTCTTCCTATGAAAGACAATACTTTTCGCTTTTACTTTTCTGT CTTTGATGTCAACCTTGTTCCCGCAAAGTACTATCGGGATATTTTCACAGACTCTGACAAGATCTCTGTGCCAATTTGGTACATTCTTG TATGTAACTCTGGAAGTTACATCAAACATGATAATAGCACACTGTCCCTGAATGTAATATCCATCACGGAGACCACCAAACTTCTCCTG ACCGGCAGTGTCCCATACATTGAACCGAATAGGGCCCCTGTTTGTATGGAAGACCAGAGGATGGACTTCAACTCCCAAAGTAGCTAC ATATCTTTTTTCAAATTCACCAGTCATATGACGTTTCACAAATGTCGTTTTTCCAGTACCTCCATCTCCGACCAACACACACTTGAAAGT GGGAAGGGCGAATTCGACCCAGCTTTCTTGTACAAAGTGGTGATATCACTAGTGCGGCCGCCTGCAGGTCGACCATATGGTCGACC TGCAGGCGGCCGCACTAGTGATGCTGTTATGTTCAGTGTCAAGCTGACCTGCAAACACGTTAAATGCTAAGAAGTTAGAATATATGAG ACACGTTAACTGGTATATGAATAAGCTGTAAATAACCGAGTATAAACTCATTAACTAATATCACCTCTAGAGTATAATATAATCAAATTC GACAATTTGACTTTCAAGAGTAGGCTAATGTAAAATCTTTATATATTTCTACAATGTTCAAAGAAACAGTTGCATCTAAACCCCTATGGC CATCAAATTCAATGAACGCTAAGCTGATCCGGCGAGATTTTCAGGAGCTAAGGAAGCTAAAATGGAGAAAAAAATCACTGGATATACC ACCGTTGATATATCCCAATGGCATCGTAAAGAACATTTTGAGGCATTTCAGTCAGTTGCTCAATGTACCTATAACCAGACCGTTCAGCT GGATATTACGGCCTTTTTAAAGACCGTAAAGAAAAATAAGCACAAGTTTTATCCGGCCTTTATTCACATTCTTGCCCGCCTGATGAATG CTCATCCGGAATTCCGTATGGCAATGAAAGACGGTGAGCTGGTGATATGGGATAGTGTTCACCCTTGTTACACCGTTTTCCATGAGCA AACTGAAACGTTTTCATCGCTCTGGAGTGAATACCACGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGATGTGGCGTGTTAC GGTGAAAACCTGGCCTATTTCCCTAAAGGGTTTATTGAGAATATGTTTTTCGTCTCAGCCAATCCCTGGGTGAGTTTCACCAGTTTTGA TTTAAACGTGGCCAATATGGACAACTTCTTCGCCCCCGTTTTCACCATGGGCAAATATTATACGCAAGGCGACAAGGTGCTGATGCCG CTGGCGATTCAGGTTCATCATGCCGTCTGTGATGGCTTCCATGTCGGCAGAATGCTTAATGAATTACAACAGTACTGCGATGAGTGG CAGGGCGGGGCGTAAACGCGTGGATCAGCTTAATATGACTCTCAATAAAGTCTCATACCAACAAGTGCCACCTTATTCAACCATCAAG AAAAAAGCCAAAATTTATGCTACTCTAAGGAAAACTTCACTAAAGAAGACGATTTAGAGTGTTTTACCAAGAATTTCTGTCATCTTACTA AACAACTAAAGATCGGTGTGATACAAAACCTAATCTCATTAAAGTTTATGCTAAAATAAGCATAATTTTACCCACTAAGCGTGACCAGAT AAACATAACTCAGCACACCAGAGCATATATATTGGTGGCTCAAATCATAGAAACTTACAGTGAAGACACAGAAAGCCGTAAGAAGAGG CAAGAGTATGAAACCTTACCTCATCATTTCCATGAGGTTGCTTCTGATCCCGCGGGATATCGGACCACTTTGTACAAGAAAGCTGGGT CGAATTCGCCCTTCCCACTTTCAAGTGTGTGTTGGTCGGAGATGGAGGTACTGGAAAAACGACATTTGTGAAACGTCATATGACTGGT GAATTTGAAAAAAGATATGTAGCTACTTTGGGAGTTGAAGTCCATCCTCTGGTCTTCCATACAAACAGGGGCCCTATTCGGTTCAATG TATGGGACACTGCCGGTCAGGAGAAGTTTGGTGGTCTCCGTGATGGATATTACATTCAGGGACAGTGTGCTATTATCATGTTTGATGT AACTTCCAGAGTTACATACAAGAATGTACCAAATTGGCACAGAGATCTTGTCAGAGTCTGTGAAAATATCCCGATAGTACTTTGCGGG AACAAGGTTGACATCAAAGACAGAAAAGTAAAAGCGAAAAGTATTGTCTTTCATAGGAAGAAGAATTTGCAGTACTATGATATCTCTGC CAAATCTAACTACAACTTTGAGAAGCCTTTCCTATGGCTAGCTAGGAAGCTTATTGGTGATCCCAATCTAGAATTTGTCGCCATGCCAG CCCTGCTTCCACAAGGGC LD014 SEQ ID NO: 245 GCCCTTCGCAGATCAAGCATATGATGGCTTTCATTGAACAAGAGGCAAACGAAAAGGCAGAAGAAATCGATGCCAAGGCCGAGGAAG AATTTAATATTGAAAAGGGGCGCCTTGTTCAGCAACAACGTCTCAAGATTATGGAATATTATGAGAAGAAAGAGAAACAGGTCGAACT CCAGAAAAAAATCCAATCGTCTAACATGTTGAATCAGGCTCGATTGAAAGTATTGAAGGTTAGGGAAGATCACGTTCGTACCGTACTA GAGGAGGCGCGTAAACGACTTGGTCAGGTCACAAACGACCAGGGAAAATATTCCCAAATCCTGGAAAGCCTCATTTTGCAGGGATTA TATCAGCTTTTTGAGAAAGATGTTACCATTCGAGTTCGGCCCCAGGACCGAGAACTGGTCAAATCCATCATTCCCACCGTCACGAACA AGTATAAAGATGCCACCGGTAAGGACATCCATCTGAAAATTGATGACGAAATCCATCTGTCCCAAGAAACCACCGGGGGAATCGACC TGCTGGCGCAGAAAAACAAAATCAAGATCAGCAATACTATGGAGGCTCGTCTGGAGCTGATTTCGCAGCAACTTCTGCCCGAGATCC GAAGGGCGAATTCACCAGCTTTCTTGTACAAAGTGGTATATCACTAGTGCGGCCGCCTGCAGGTCGACCATATGGTCGACCTGCAGG CGGCCGCACTAGTGATGCTGTTATGTTCAGTGTCAAGCTGACCTGCAAACACGTTAAATGCTAAGAAGTTAGAATATATGAGACACGT TAACTGGTATATGAATAAGCTGTAAATAACCGAGTATAAACTCATTAACTAATATCACCTCTAGAGTATAATATAATCAAATTCGACAAT TTGACTTTCAAGAGTAGGCTAATGTAAAATCTTTATATATTTCTACAATGTTCAAAGAAACAGTTGCATCTAAACCCCTATGGCCATCAA ATTCAATGAACGCTAAGCTGATCCGGCGAGATTTTCAGGAGCTAAGGAAGCTAAAATGGAGAAAAAAATCACTGGATATACCACCGTT GATATATCCCAATGGCATCGTAAAGAACATTTTGAGGCATTTCAGTCAGTTGCTCAATGTACCTATAACCAGACCGTTCAGCTGGATAT TACGGCCTTTTTAAAGACCGTAAAGAAAAATAAGCACAAGTTTTATCCGGCCTTTATTCACATTCTTGCCCGCCTGATGAATGCTCATC CGGAATTCCGTATGGCAATGAAAGACGGTGAGCTGGTGATATGGGATAGTGTTCACCCTTGTTACACCGTTTTCCATGAGCAAACTGA AACGTTTTCATCGCTCTGGAGTGAATACCACGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGATGTGGCGTGTTACGGTGAA AACCTGGCCTATTTCCCTAAAGGGTTTATTGAGAATATGTTTTTCGTCTCAGCCAATCCCTGGGTGAGTTTCACCAGTTTTGATTTAAA CGTGGCCAATATGGACAACTTCTTCGCCCCCGTTTTCACCATGGGCAAATATTATACGCAAGGCGACAAGGTGCTGATGCCGCTGGC GATTCAGGTTCATCATGCCGTCTGTGATGGCTTCCATGTCGGCAGAATGCTTAATGAATTACAACAGTACTGCGATGAGTGGCAGGG CGGGGCGTAAACGCGTGGATCAGCTTAATATGACTCTCAATAAAGTCTCATACCAACAAGTGCCACCTTATTCAACCATCAAGAAAAA AGCCAAAATTTATGCTACTCTAAGGAAAACTTCACTAAAGAAGACGATTTAGAGTGTTTTACCAAGAATTTCTGTCATCTTACTAAACAA CTAAAGATCGGTGTGATACAAAACCTAATCTCATTAAAGTTTATGCTAAAATAAGCATAATTTTACCCACTAAGCGTGACCAGATAAACA TAACTCAGCACACCAGAGCATATATATTGGTGGCTCAAATCATAGAAACTTACAGTGAAGACACAGAAAGCCGTAAGAAGAGGCAAGA GTATGAAACCTTACCTCATCATTTCCATGAGGTTGCTTCTGATCCCGCGGGATATCGACCACTTTGTACAAGAAAGCTGGGTCGAATT CGCCCTTCGGATCTCGGGCAGAAGTTGCTGCGAAATCAGCTCCAGACGAGCCTCCATAGTATTGCTGATCTTGATTTTGTTTTTCTGC GCCAGCAGGTCGATTCCCCCGGTGGTTTCTTGGGACAGATGGATTTCGTCATCAATTTTCAGATGGATGTCCTTACCGGTGGCATCTT TATACTTGTTCGTGACGGTGGGAATGATGGATTTGACCAGTTCTCGGTCCTGGGGCCGAACTCGAATGGTAACATCTTTCTCAAAAAG CTGATATAATCCCTGCAAAATGAGGCTTTCCAGGATTTGGGAATATTTTCCCTGGTCGTTTGTGACCTGACCAAGTCGTTTACGCGCC TCCTCTAGTACGGTACGAACGTGATCTTCCCTAACCTTCAATACTTTCAATCGAGCCTGATTCAACATGTTAGACGATTGGATTTTTTT CTGGAGTTCGACCTGTTTCTCTTTCTTCTCATAATATTCCATAATCTTGAGACGTTGTTGCTGAACAAGGCGCCCCTTTTCAATATTAAA TTCTTCCTCGGCCTTGGCATCGATTTCTTCTGCCTTTTCGTTTGCCTCTTGTTCAATGAAAGCCATCATATGCTTGATCTGCGAAGGGC LD016 SEQIDNO: 246 GCCCTTGGAATAGGATGGGTAATGTCGTCGTTGGGCATAGTCAATATAGGAATCTGGGTGATGGATCCGTTACGTCCTTCAACACGG CCGGCACGTTCATAGATGGTAGCTAAATCGGTGTACATGTAACCTGGGAAACCACGACGACCAGGCACCTCTTCTCTGGCAGCAGAT ACCTCACGCAAAGCTTCTGCATACGAAGACATATCTGTCAAGATGACCAAGACGTGCTTCTCACATTGGTAAGCCAAGAATTCGGCAG CTGTCAAAGCCAGACGAGGTGTAATAATTCTTTCAATGGTAGGATCGTTGGCCAAATTCAAGAACAGGCAGACATTCTCCATAGAACC GTTCTCTTCGAAATCCTGTTTGAAGAACCTAGCTGTTTCCATGTTAACACCCATAGCAGCGAAAACAATAGCAAAGTTATCTTCATGAT CATCAAGTACAGATTTACCAGGAATCTTGACTAAACCAGCCTGTCTACAGATCTGGGCAGCAATTTCATTGTGAGGCAGACCAGCTGC AGAGAAAATGGGGATCTTCTGACCACGAGCAATGGAGTTCATCACGTCAATAGCTGTAATACCCGTCTGGATCATTTCCTCAGGATAG ATACGGGACCACGGATTGATTGGTTGACCCTGGATGTCCAAGAAGTCTTCAGCCAAAATTGGGGGACCTTTGTCGATGGGTTTTCCT GATCCATTGAAAACACGTCCCAACATATCTTCAGAAACAGGAGTCCTCAAAATATCTCCTGTGAATTCACAAGCGGTGTTTTTGGCGT CGATTCCTGATGTGCCCTCGAACACTTGAACCACAGCTTTTGACCCACTGACTTCCAGAACTTGTCCCGAACGTATAGTGCCATCAGC CAGTTTGAGTTGTACGATTTCATTGTACTTGGGGAACTTAACATCTTCGAGGATTACCAGAGGACCGTTCACACCAGACACAGTCAAG GGCGAATTCACCAGCTTTCTTGTACAAAGTGGTATATCACTAGTGCGGCCGCCTGCAGGTCGACCATATGGTCGACCTGCAGGCGG CCGCACTAGTGATGCTGTTATGTTCAGTGTCAAGCTGACCTGCAAACACGTTAAATGCTAAGAAGTTAGAATATATGAGACACGTTAA CTGGTATATGAATAAGCTGTAAATAACCGAGTATAAACTCATTAACTAATATCACCTCTAGAGTATAATATAATCAAATTCGACAATTTG ACTTTCAAGAGTAGGCTAATGTAAAATCTTTATATATTTCTACAATGTTCAAAGAAACAGTTGCATCTAAACCCCTATGGCCATCAAATT CAATGAACGCTAAGCTGATCCGGCGAGATTTTCAGGAGCTAAGGAAGCTAAAATGGAGKAAAAAATCACTGGATATACCACCGTTGAT ATATCCCAATGGCATCGTAAAGAACATTTTGAGGCATTTCAGTCAGTTGCTCAATGTACCTATAACCAGACCGTTCAGCTGGATATTAC GGCCTTTTTAAAGACCGTAAAGAAAAATAAGCACAAGTTTTATCCGGCCTTTATTCACATTCTTGCCCGCCTGATGAATGCTCATCCGG AATTCCGTATGGCAATGAAAGACGGTGAGCTGGTGATATGGGATAGTGTTCACCCTTGTTACACCGTTTTCCATGAGCAAACTGAAAC GTTTTCATCGCTCTGGAGTGAATACCACGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGATGTGGCGTGTTACGGTGAAAAC CTGGCCTATTTCCCTAAAGGGTTTATTGAGAATATGTTTTTCGTCTCAGCCAATCCCTGGGTGAGTTTCACCAGTTTTGATTTAAACGT GGCCAATATGGACAACTTCTTCGCCCCCGTTTTCACCATGGGCAAATATTATACGCAAGGCGACAAGGTGCTGATGCCGCTGGCGAT TCAGGTTCATCATGCCGTCTGTGATGGCTTCCATGTCGGCAGAATGCTTAATGAATTACAACAGTACTGCGATGAGTGGCAGGGCGG GGCGTAAACGCGTGGATCAGCTTAATATGACTCTCAATAAAGTCTCATACCAACAAGTGCCACCTTATTCAACCATCAAGAAAAAAGC CAAAATTTATGCTACTCTAAGGAAAACTTCACTAAAGAAGACGATTTAGAGTGTTTTACCAAGAATTTCTGTCATCTTACTAAACAACTA AAGATCGGTGTGATACAAAACCTAATCTCATTAAAGTTTATGCTAAAATAAGCATAATTTTACCCACTAAGCGTGACCAGATAAACATAA CTCAGCACACCAGAGCATATATATTGGTGGCTCAAATCATAGAAACTTACAGTGAAGACACAGAAAGCCGTAAGAAGAGGCAAGAGT ATGAAACCTTACCTCATCATTTCCATGAGGTTGCTTCTGATCCCGCGGGATATCACCACTTTGTACAAGAAAGCTGGGTCGAATTCGC CCTTGACTGTGTCTGGTGTGAACGGTCCTCTGGTAATCCTCGAAGATGTTAAGTTCCCCAAGTACAATGAAATCGTACAACTCAAACT GGCTGATGGCACTATACGTTCGGGACAAGTTCTGGAAGTCAGTGGGTCAAAAGCTGTGGTTCAAGTGTTCGAGGGCACATCAGGAAT CGACGCCAAAAACACCGCTTGTGAATTCACAGGAGATATTTTGAGGACTCCTGTTTCTGAAGATATGTTGGGACGTGTTTTCAATGGA TCAGGAAAACCCATCGACAAAGGTCCCCCAATTTTGGCTGAAGACTTCTTGGACATCCAGGGTCAACCAATCAATCCGTGGTCCCGT ATCTATCCTGAGGAAATGATCCAGACGGGTATTACAGCTATTGACGTGATGAACTCCATTGCTCGTGGTCAGAAGATCCCCATTTTCT CTGCAGCTGGTCTGCCTCACAATGAAATTGCTGCCCAGATCTGTAGACAGGCTGGTTTAGTCAAGATTCCTGGTAAATCTGTACTTGA TGATCATGAAGATAACTTTGCTATTGTTTTCGCTGCTATGGGTGTTAACATGGAAACAGCTAGGTTCTTCAAACAGGATTTCGAAGAGA ACGGTTCTATGGAGAATGTCTGCCTGTTCTTGAATTTGGCCAACGATCCTACCATTGAAAGAATTATTACACCTCGTCTGGCTTTGACA GCTGCCGAATTCTTGGCTTACCAATGTGAGAAGCACGTCTTGGTCATCTTGACAGATATGTCTTCGTATGCAGAAGCTTTGCGTGAGG TATCTGCTGCCAGAGAAGAGGTGCCTGGTCGTCGTGGTTTCCCAGGTTACATGTACACCGATTTAGCTACCATCTATGAACGTGCCG GCCGTGTTGAAGGACGTAACGGATCCATCACCCAGATTCCTATATTGACTATGCCCAACGACGACATTACCCATCCTATTCCAAGGGC LD027 SEQIDNO 2486 GGGAGCAGACGATCGGTTGGTTAAAATCTGGGACTATCAAAACAAAACGTGTGTCCAAACCTTGGAAGGACACGCCCAAAACGTAAC CGCGGTTTGTTTCCACCCTGAACTACCTGTGGCTCTCACAGGCAGCGAAGATGGTACCGTTAGAGTTTGGCATACGAATACACACAG ATTAGAGAATTGTTTGAATTATGGGTTCGAGAGAGTGTGGACCATTTGTTGCTTGAAGGGTTCGAATAATGTTTCTCTGGGGTATGAC GAGGGCAGTATATTAGTGAAAGTTGGAAGAGAAGAACCGGCAGTTAGTATGGATGCCAGTGGCGGTAAAATAATTTGGGCAAGGCAC TCGGAATTACAACAAGCTAATTTGAAGGCGCTGCCAGAAGGTGGAGAAATAAGAGATGGGGAGCGTTTACCTGTCTCTGTAAAAGAT ATGGGAGCATGTGAAATATACCCTCAAACAATCCAACATAATCCGAATGGAAGATTCGTTGTAGTATGCGGAGACGGCGAATATATCA TTTACACAGCGATGGCTCTACGGAACAAGGCTTTTGGAAGCGCTCAAGAGTTTGTCTGGGCTCAGGACTCCAGCGAGTATGCCATTC GCGAGTCTGGTTCCACAATTCGGATATTCAAAAACTTCAAAGAAAGGAAGAACTTCAAGTCGGATTTCAGCGCGGAAGGAATCTACG GGGGTTTTCTCTTGGGGATTAAATCGGTGTCCGGTTTAACGTTTTACGATTGGGAAACTTTGGACTTGGTGAGACGGATTGAAATACA ACCGAGGGCGGTTTATTGGTCTGACAGTGGAAAATTAGTCTGTCTCGCAACGGAGGACAGCTACTTCATCCTTTCTTATGATTCGGAG CAAGTTCAGAAAGGCCAGGGAGAACAATCAAGTCGCAGAGGATGGCGTAGAGGCCGCTTTCGATGTGTTGGGGGAAATGAACGAGTC TGTCCGAACCCAGCTTTCTTGTACAAAGTGGTGATATCCCGCGGGATCAGAAGCAACCTCATGGAAATGATGAGGTAAGGTTTCATAC TCTTGCCTCTTCTTACGGCTTTCTGTGTCTTCACTGTAAGTTTCTATGATTTGAGCCACCAATATATATGCTCTGGTGTGCTGAGTTATG TTTATCTGGTCACGCTTAGTGGGTAAAATTATGCTTATTTTAGCATAAACTTTAATGAGATTAGGTTTTGTATCACACCGATCTTTAGTT GTTTAGTAAGATGACAGAAATTCTTGGTAAAACACTCTAAATCGTCTTTCTTTAGTGAAGTTTTCCTTAGAGTAGCATAAATTTTGGCTTT TTTCTTGATGGTTGAATAAGGTGGCACTTGTTGGTATGAGACTTTATTGAGAGTCATATTAAGCTGATCCACGCGTTTACGCCCCGCC CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAGACGGCATGATGAACCTGAATCGCC AGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTT AAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTT CACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTC AGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGA TGAGCATTCATCAGGCGGGCAAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGGTCTTTAAAAAGGCCGTAAT ATCCAGCTGAACGGTCTGGTTATAGGTACATTGAGCAACTGACTGAAATGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCAA CGGTGGTATATCCAGTGATTTTTTTCTCCATTTTAGCTTCCTTAGCTCCTGAAAATCTCGCCGGATCAGCTTAGCGTTCATTGAATTTG ATGGCCATAGGGGTTAGATGCAACTGTTTCTTTGAACATTGTAGAAATATATAAAGATTTTACATTAGCCTACTCTTGAAAGTCAAATT GTCGAATTTGATTATATTATACTCTAGAGGTGATATTAGTTAATGAGTTTATACTCGGTTATTTACAGCTTATTCATATACCAGTTAACGT GTCTCATATATTCTAACTTCTTAGCATTTAACGTGTTTGCAGGTCAGCTTGACACTGAACATAACAGCATCACTAGTGCGGCCGCCTG CAGGTCGACCATATGGTCGACCTGCAGGCGGCCGCACTAGTGATATACCACTTTGTACAAGAAAGCTGGTCGAATTCGCCCTTTCGG ACAGACTCGTTCATTTCCCCCAACACATCGAAAGCGGCCTCTACGCCATCCTCTGCGACTTGATTGTTCTCCCTGGCCTTCTGAACTT GCTCCGAATCATAAGAAAGGATGAAGTAGCTGTCCTCCGTTGCGAGACAGACTAATTTTCCACTGTCAGACCAATAAACCGCCCTCG GTTGTATTTCAATCCGTCTCACCAAGTCCAAAGTTTCCCAATCGTAAAACGTTAAACCGGACACCGATTTAATCCCCAAGAGAAAACCC CCGTAGATTCCTTCCGCGCTGAAATCCGACTTGAAGTTCTTCCTTTCTTTGAAGTTTTTGAATATCCGAATTGTGGAACCAGACTCGCG AATGGCATACTCGCTGGAGTCCTGAGCCCAGACAAACTCTTGAGCGCTTCCAAAAGCCTTGTTCCGTAGAGCCATCGCTGTGTAAAT GATATATTCGCCGTCTCCGCATACTACAACGAATCTTCCATTCGGATTATGTTGGATTGTTTGAGGGTATATTTCACATGCTCCCATAT CTTTTACAGAGACAGGTAAACGCTCCCCATCTCTTATTTCTCCACCTTCTGGCAGCGCCTTCAAATTAGCTTGTTGTAATTCCGAGTGC CTTGCCCAAATTATTTTACCGCCACTGGCATCCATACTAACTGCCGGTTCTTCTCTTCCAACTTTCACTAATATACTGCCCTCGTCATA CCCCAGAGAAACATTATTCGAACCCTTCAAGCAACAAATGGTCCACACTCTCTCGAACCCATAATTCAAACAATTCTCTAATCTGTGTG TATTCGTATGCCAAACTCTAACGGTACCATCTTCGCTGCCTGTGAGAGCCACAGGTAGTTCAGGGTGGAAACAAACCGCGGTTACGT TTTGGGCGTGTCCTTCCAAGGTTTGGACACACGTTTTGTTTTGATAGTCCCAGATTTTAACCAACCGATCGTCTGCTCCC -
TABLE 9-PC Hairpin Sequence Target ID 5′ → 3′ PC001 SEQ ID NO: 508 AGATTCAAATTTGATGTAGTCAAGAATTTTAGATGTAGCAATTTCCATTTGAATTGTGTCATTCACTTTGATGTTGGGGTCAGGGTAACGA ATGGTTCTGCCATCATGTGTTACCAAAAATGGGATTCCTTTGGGACCAGTTTGGACTCTCCTTACTTTACACAACTTGTATTTTGCCTCTT CAGCTGTAATACGGTGCACAGCAAATCTTCCTTTAACATCATAGATCAGACGGAAAAATTCACCAGTCTTCTCAATAGTAATGACATCCA TGAAACCAGCAGGGTAATTAGAATCAGTCCTCACTTTACCATCAACTTTGATCAACCTTTGCATGACAATTTTAGTGACTTCACTGTTTGT AAGGGCATACTTCAGCCTGTTACGAAGGAAAATCACTAAAGGCAGGGATTCGCGCAACTTGTGAGGCCCGGTGGATGGACGAGGGGC GAAGACACCCCCCAATTTGTCCAACATCCATGCAAGGGCGAATTCGACCCAGCTTTCTTGTACAAAGTGGTGATATCACTAGTGCGGCC GCCTGCAGGTCGACCATATGGTCGACCTGCAGGCGGCCGCACTAGTGATGCTGTTATGTTCAGTGTCAAGCTGACCTGCAAACACGTT AAATGCTAAGAAGTTAGAATATATGAGACACGTTAACTGGTATATGAATAAGCTGTAAATAACCGAGTATAAACTCATTAACTAATATCAC CTCTAGAGTATAATATAATCAAATTCGACAATTTGACTTTCAAGAGTAGGCTAATGTAAAATCTTTATATATTTCTACAATGTTCAAAGAAA CAGTTGCATCTAAACCCCTATGGCCATCAAATTCAATGAACGCTAAGCTGATCCGGCGAGATTTTCAGGAGCTAAGGAAGCTAAAATGG AGAAAAAAATCACTGGATATACCACCGTTGATATATCCCAATGGCATCGTAAAGAACATTTTGAGGCATTTCAGTCAGTTGCTCAATGTA CCTATAACCAGACCGTTCAGCTGGATATTACGGCCTTTTTAAAGACCGTAAAGAAAAATAAGCACAAGTTTTATCCGGCCTTTATTCACA TTCTTGCCCGCCTGATGAATGCTCATCCGGAATTCCGTATGGCAATGAAAGACGGTGAGCTGGTGATATGGGATAGTGTTCACCCTTGT TACACCGTTTTCCATGAGCAAACTGAAACGTTTTCATCGCTCTGGAGTGAATACCACGACGATTTCCGGCAGTTTCTACACATATATTCG CAAGATGTGGCGTGTTACGGTGAAAACCTGGCCTATTTCCCTAAAGGGTTTATTGAGAATATGTTTTTCGTCTCAGCCAATCCCTGGGT GAGTTTCACCAGTTTTGATTTAAACGTGGCCAATATGGACAACTTCTTCGCCCCCGTTTTCACCATGGGCAAATATTATACGCAAGGCGA CAAGGTGCTGATGCCGCTGGCGATTCAGGTTCATCATGCCGTCTGTGATGGCTTCCATGTCGGCAGAATGCTTAATGAATTACAACAGT ACTGCGATGAGTGGCAGGGCGGGGCGTAAACGCGTGGATCAGCTTAATATGACTCTCAATAAAGTCTCATACCAACAAGTGCCACCTT ATTCAACCATCAAGAAAAAAGCCAAAATTTATGCTACTCTAAGGAAAACTTCACTAAAGAAGACGATTTAGAGTGTTTTACCAAGAATTTC TGTCATCTTACTAAACAACTAAAGATCGGTGTGATACAAAACCTAATCTCATTAAAGTTTATGCTAAAATAAGCATAATTTTACCCACTAAG CGTGACCAGATAAACATAACTCAGCACACCAGAGCATATATATTGGTGGCTCAAATCATAGAAACTTACAGTGAAGACACAGAAAGCCG TAAGAAGAGGCAAGAGTATGAAACCTTACCTCATCATTTCCATGAGGTTGCTTCTGATCCCGCGGGATATCACCACTTTGTACAAGAAA GCTGGGTCGAATTCGCCCTTGCATGGATGTTGGACAAATTGGGGGGTGTCTTCGCCCCTCGTCCATCCACCGGGCCTCACAAGTTGCG CGAATCCCTGCCTTTAGTGATTTTCCTTCGTAACAGGCTGAAGTATGCCCTTACAAACAGTGAAGTCACTAAAATTGTCATGCAAAGGTT GATCAAAGTTGATGGTAAAGTGAGGACTGATTCTAATTACCCTGCTGGTTTCATGGATGTCATTACTATTGAGAAGACTGGTGAATTTTT CCGTCTGATCTATGATGTTAAAGGAAGATTTGCTGTGCACCGTATTACAGCTGAAGAGGCAAAATACAAGTTGTGTAAAGTAAGGAGAG TCCAAACTGGTCCCAAAGGAATCCCATTTTTGGTAACACATGATGGCAGAACCATTCGTTACCCTGACCCCAACATCAAAGTGAATGAC ACAATTCAAATGGAAATTGCTACATCTAAAATTCTTGACTACATCAAATTTGAATCT PC010 SEQ ID NO: 509 CTCTCAAGGATTCTTTGCAGATGTCGCTCAGCCTATTACCGCCCAACGCGTTGATTGGATTGATCACGTTCGGAAAAATGGTGCAAGTC CACGAACTGGGTACCGAAGGCTGCAGCAAGTCGTACGTGTTCTGTGGAACGAAAGATCTCACCGCCAAGCAAGTCCAGGAGATGTTG GGCATTGGAAAAGGGTCACCAAATCCCCAACAACAGCCAGGGCAACCTGGGCGGCCAGGGCAGAATCCCCAAGCTGCCCCTGTACCA CCGGGGAGCAGATTCTTGCAGCCCGTGTCAAAATGCGACATGAACTTGACAGATCTGATCGGGGAGTTGCAGAAAGACCCTTGGCCC GTACATCAGGGCAAAAGACCTCTTAGATCCACAGGCGCAGCATTGTCCATCGCTGTCGGCCTCTTAGAATGCACCTATCCGAATACGG GTGGCAGAATCATGATATTCTTAGGAGGACCATGCTCTCAGGGTCCCGGCCAGGTGTTGAACGACGATTTGAAGCAGCCCATCAGGTC CCATCATGACATACACAAAGACAATGCCAAGTACATGAAGAAGGCTATCAAACATTACGATCACTTGGCAATGCGAGCTGCCACCAACA GCCATTGCATCGACATTTACTCCTGCGCCCTGGATCAGACGGGACTGATGGAGATGAAGCAGTGCTGCAATTCCACCGGAGGGCACAT GGTCATGGGCGATTCCTTCAATTCCTCTCTATTCAAACAAACCTTCCAGCGAGTGTTCTCAAAAGACCCGAAGAACGACCTCAAGATGG CGTTCAACGCCACCTTGGAGGTGAAGTGTTCCAGGGAGTTAAAAGTCCAAGGGGGCATCGGCTCGTGCGTGTCCTTGAACGTTAAAAG CCCTCTGGTTTCCGATACGGAACTAGGCATGGGGAATACTGTGCAGTGGAAACTTTGCACGTTGGCGCCGAGCTCTACTGTGGCGCTG TTCTTCGAGGTGGTTAACCAGCATTCGGCGCCCATACCACAGGGAGGCAGGGGCTGCATCCAGCTCATCACCCAGTATCAGCACGCG AGCGGGCAAAGGAGGATCAGAGTGACCACGATTGCTAGAAATTGGGCGGACGCTACTGCCAACATCCACCACATTAGCGCTGGCTTC GACCAAGAAGCGGCGGCAGTTGTGATGGCCCGAATGGCCGGTTACAAGGCGGAATCGGACGAGACTCCCGACGTGCTCAGATGGGT GGACAGGATGTTGATCAGGCTGTGCCAGAAGTTCGGAGAGTACAATAAAGACGATCCGAATTCGTTCAGGTTGGGGGAGAACTTCAGT CTGTATCCGCAGTTCATGTACCATTTGAGACGGTCGCAGTTTCTGCAGGTGTTCAATAATTCTCCTGATGAAACGTCGTTTTATAGGCAC ATGCTGATGCGTGAGGATTTGACTCAGTCTTTGATCATGATCCAGCCGATTTTGTACAGTTACAGCTTCAACGGGCCGCCCGAGCCTGT GTTGTTGGACACAAGCTCTATTCAGCCGGATAGAATCCTGCTCATGGACACTTTCTTCCAGATACTCATTTTCCATGGAGAGACCATTGC CCAATGGCGAAGGGCGAATTCGACCCAGCTTTCTTGTACAAAGTGGTGATATCACTAGTGCGGCCGCCTGCAGGTCGACCATATGGTC GACCTGCAGGCGGCCGCACTAGTGATGCTGTTATGTTCAGTGTCAAGCTGACCTGCAAACACGTTAAATGCTAAGAAGTTAGAATATAT GAGACACGTTAACTGGTATATGAATAAGCTGTAAATAACCGAGTATAAACTCATTAACTAATATCACCTCTAGAGTATAATATAATCAAAT TCGACAATTTGACTTTCAAGAGTAGGCTAATGTAAAATCTTTATATATTTCTACAATGTTCAAAGAAACAGTTGCATCTAAACCCCTATGG CCATCAAATTCAATGAACGCTAAGCTGATCCGGCGAGATTTTCAGGAGCTAAGGAAGCTAAAATGGAGAAAAAAATCACTGGATATACC ACCGTTGATATATCCCAATGGCATCGTAAAGAACATTTTGAGGCATTTCAGTCAGTTGCTCAATGTACCTATAACCAGACCGTTCAGCTG GATATTACGGCCTTTTTAAAGACCGTAAAGAAAAATAAGCACAAGTTTTATCCGGCCTTTATTCACATTCTTGCCCGCCTGATGAATGCT CATCCGGAATTCCGTATGGCAATGAAAGACGGTGAGCTGGTGATATGGGATAGTGTTCACCCTTGTTACACCGTTTTCCATGAGCAAAC TGAAACGTTTTCATCGCTCTGGAGTGAATACCACGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGATGTGGCGTGTTACGGTG AAAACCTGGCCTATTTCCCTAAAGGGTTTATTGAGAATATGTTTTTCGTCTCAGCCAATCCCTGGGTGAGTTTCACCAGTTTTGATTTAAA CGTGGCCAATATGGACAACTTCTTCGCCCCCGTTTTCACCATGGGCAAATATTATACGCAAGGCGACAAGGTGCTGATGCCGCTGGCG ATTCAGGTTCATCATGCCGTCTGTGATGGCTTCCATGTCGGCAGAATGCTTAATGAATTACAACAGTACTGCGATGAGTGGCAGGGCGG GGCGTAAACGCGTGGATCAGCTTAATATGACTCTCAATAAAGTCTCATACCAACAAGTGCCACCTTATTCAACCATCAAGAAAAAAGCCA AAATTTATGCTACTCTAAGGAAACTTCACTAAAGAAGACGATTTAGAGTGTTTTACCAAGAATTTCTGTCATCTTACTAAACAACTAAAG ATCGGTGTGATACAAAACCTAATCTCATTAAAGTTTATGCTAAAATAAGCATAATTTTACCCACTAAGCGTGACCAGATAAACATAACTCA GCACACCAGAGCATATATATTGGTGGCTCAAATCATAGAAACTTACAGTGAAGACACAGAAAGCCGTAAGAAGAGGCAAGAGTATGAAA CCTTACCTCATCATTTCCATGAGGTTGCTTCTGATCCCGCGGGATATCACCACTTTGTACAAGAAAGCTGGGTCGAATTCGCCCTTCGC CATTGGGCAATGGTCTCTCCATGGAAAATGAGTATCTGGAAGAAAGTGTCCATGAGCAGGATTCTATCCGGCTGAATAGAGCTTGTGTC CAACAACACAGGCTCGGGCGGCCCGTTGAAGCTGTAACTGTACAAAATCGGCTGGATCATGATCAAAGACTGAGTCAAATCCTCACGC ATCAGCATGTGCCTATAAAACGACGTTTCATCAGGAGAATTATTGAACACCTGCAGAAACTGCGACCGTCTCAAATGGTACATGAACTG CGGATACAGACTGAAGTTCTCCCCCAACCTGAACGAATTCGGATCGTCTTTATTGTACTCTCCGAACTTCTGGCACAGCCTGATCAACA TCCTGTCCACCCATCTGAGCACGTCGGGAGTCTCGTCCGATTCCGCCTTGTAACCGGCCATTCGGGCCATCACAACTGCCGCCGCTTC TTGGTCGAAGCCAGCGCTAATGTGGTGGATGTTGGCAGTAGCGTCCGCCCAATTTCTAGCAATCGTGGTCACTCTGATCCTCCTTTGCC CGCTCGCGTGCTGATACTGGGTGATGAGCTGGATGCAGCCCCTGCCTCCCTGTGGTATGGGCGCCGAATGCTGGTTAACCACCTCGA AGAACAGCGCCACAGTAGAGCTCGGCGCCAACGTGCAAAGTTTCCACTGCACAGTATTCCCCATGCCTAGTCCGTATCGGAAACCAG AGGGCTTTTAACGTTCAAGGACACGCACGAGCCGATGCCCCCTTGGACTTTTAACTCCCTGGAACACTCACCTCCAAGGTGGCGTTG AACGCCATCTTGAGGTCGTTCTTCGGGTCTTTTGAGAACACTCGCTGGAAGGTTTGTTTGAATAGAGAGGAATGAAGGTCGCCCAT GACCATGTGCCCTCCGGTGGAATTGCAGCACTGCTTCATCTCCATCAGTCCCGTCTGATCCAGGGCGCAGGAGTAAATGTCGATGCAA TGGCTGTTGGTGGCAGCTCGCATTGCCAAGTGATCGTAATGTTTGATAGCCTTCTTCATGTACTTGGCATTGTCTTTGTGTATGTCATGA TGGGACCTGATGGGCTGCTTCAAATCGTCGTTCAACACCTGGCCGGGACCCTGAGAGCATGGTCCTCCTAAGAATATCATGATTCTGC CACCCGTATTCGGATAGGTGCATTCTAAGAGGCCGACAGCGATGGACAATGCTGCGCCTGTGGATCTAAGAGGTCTTTTGCCCTGATG TACGGGCCAAGGGTCTTTCTGCAACTCCCCGATCAGATCTGTCAAGTTCATGTCGCATTTTGACACGGGCTGCAAGAATCTGCTCCCCG GTGGTACAGGGGCAGCTTGGGGATTCTGCCCTGGCCGCCCAGGTTGCCCTGGCTGTTGTTGGGGATTTGGTGACCCTTTTCCAATGC CCAACATCTCCTGGACTTGCTTGGCGGTGAGATCTTTCGTCCACAGAACACGTACGACTGCTGCAGCCTTCGGTACCCAGTTCGTG GACTTGCACCATTTTTCCGAACGTGATCAATCCAATCAACGCGTTGGGCGGTAATAGGCTGAGCGACATCTGCAAAGAATCCTGAGAG PC014 SEQ ID NO: 510 CGCAGATCAAACATATGATGGCTTTCATTGAACAAGAAGCCAATGAGAAAGCAGAAGAATCGATGCCAAGGCAGAGGAGGAATTCAAC ATTGAAAAAGGGCGTTTAGTCCAGCAACAGAGACTCAAGATCATGGAGTACTACGAGAAAAAGGAGAAGCAAGTCGAACTTCAAAAGAA AATTCAGTCCTCTAATATGTTGAATCAGGCTCGTTTGAAGGTGCTGAAAGTGAGAGAGGACCATGTCAGAGCAGTCCTGGAGGATGCTC GTAAAAGTCTTGGTGAAGTAACCAAAGACCAAGGAAAATACTCCCAAATTTTGGAGAGCCTAATCCTACAAGGACTGTTCCAGCTGTTC GAGAAGGAGGTGACGGTCCGCGTGAGACCGCAAGATAGGGACTTGGTTAGGTCCATCCTGCCCAACGTCGCTGCCAAATACAAGGAC GCCACCGGCAAAGACATCCTACTCAAGGTGGACGATGAGTCGCACCTGTCTCAGGAGATCACCGGAGGCGTCGATCTGCTCGCTCAG AAGAACAAGATCAAGATCAGCAACACGATGGAGGCTAGGTGGATCTGATCGCTCAGCAATTGGTGCCCGAGATCCGAAGGGCGAATT CGACCCAGCTTTCTTGTACAAAGTGGTGATATCACTAGTGCGGCCGCCTGCAGGTCGACCATATGGTCGACCTGCAGGCGGCCGCACT AGTGATGCTGTTATGTTCAGTGTCAAGCTGACCTGCAACACGTTAAATGCTAAGAAGTTAGAATATATGAGACACGTTAACTGGTATAT GAATAAGCTGTAAATAACCGAGTATAAACTCATTAACTAATATCACCTCTAGAGTATAATATAATCAAATTCGACAATTTGACTTTCAAGAG TAGGCTAATGTAAAATCTTTATATTTCTACAATGTTCAAAGAAAACAGTTGCATCTAAACCCCTATGGCCATCAAATTCAATGAACGCTA AGCTGATCCGGCGAGATTTTCAGGAGCTAAGGAAGCTAAAATGGAGAAAAAAATCACTGGATATACCACCGTTGATATATCCCAATGGC ATCGTAAAGAACATTTTGAGGCATTTCAGTCAGTTGCTCAATGTACCTATAACCAGACCGTTCAGCTGGATATACGGCCTTTTTAAAGA CCGTAAAGAAAAATAAGCACAAGTTTTATCCGGCCTTTATTCACATTCTTGCCCGCCTGATGAATGCTCATCCGGAATTCCGTATGGCAA TGAAAGACGGTGAGCTGGTGATATGGGATAGTGTTCACCCTTGTTACACCGTTTTCCATGAGCAAACTGAAACGTTTTCATCGCTCTGG AGTGAATACCACGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGATGTGGCGTGTTACGGTGAAAACCTGGCCTATTTCCCTAAA GGGTTTATTGAGAATATGTTTTTCGTCTCAGCCAATCCCTGGGTGAGTTTCACCAGTTTTGATTTAAACGTGGCCAATATGGACAACTTC TTCGCCCCCGTTTTCACCATGGGCAAATATTATACGCAAGGCGACAAGGTGCTGATGCCGCTGGCGATTCAGGTTCATCATGCCGTCT GTGATGGCTTCCATGTCGGCAGAATGCTTAATGAATTACAACAGTACTGCGATGAGTGGCAGGGCGGGGCGTAAACGCGTGGATCAGC TTAATATGACTCTCAATAAAGTCTCATACCAACAAGTGCCACCTTATTCAACCATCAAGAAAAAAGCCAAAATTTATGCTACTCTAAGGAA AACTTCACTAAAGAAGACGATTTAGAGTGTTTTACCAAGAATTTCTGTCATCTTACTAAACAACTAAAGATCGGTGTGATACAAAACCTAA TCTCATTAAAGTTTATGCTAAAATAAGCATAATTTTACCCACTAAGCGTGACCAGATAAACATAACTCAGCACACCAGAGCATATATATG GTGGCTCAAATCATAGAAACTTACAGTGAAGACACAGAAAGCCGTAAGAAGAGGCAAGAGTATGAAACCTTACCTCATCATTTCCATGA GGTTGCTTCTGATCCCGCGGGATATCACCACTTTGTACAAGAAAGCTGGGTCGAATTCGCCCTCGGATCTCGGGCACCAATTGCTGA GCGATCAGATCCAACCTAGCCTCCATCGTGTTGCTGATCTTGATCTTGTTCTTCTGAGCGAGCAGATCGACGCCTCCGGTGATCTCCTG AGACAGGTGCGACTCATCGTCCACCTGAGTAGGATGTCTTTGCCGGTGGCGTCCTTGTATTTGGCAGCGACGTTGGGCAGGATGGAC CTAACCAAGTCCCTATCTTGCGGTCTCACGCGGACCGTCACCTCCTTCTCGAACAGCTGGAACAGTCCTTGTAGGATTAGGCTCTCCAA AATTTGGGAGTATTTTCCTTGGTCTTTGGTTACTTCACCAAGACTTTTACGAGCATCCTCCAGGACTGCTCTGACATGGTCCTCTCTCAC TTTCAGCACCTTCAAACGAGCCTGATTCAACATATTAGAGGACTGAATTTTCTTTTGAAGTTCGACTTGCTTCTCCTTTTTCTCGTAGTAC TCCATGATCTTGAGTCTCTGTTGCTGGACTAAACGCCCTTTTTCAATGTTGAATTCCTCCTCTGCCTTGGCATCGATTTCTTCTGCTTTCT CATTGGCTTCTTGTTCAATGAAAGCCATCATATGTTTGATCTGCG PC016 SEQ ID NO: 511 TTGGGCATAGTCAAGATGGGGATCTGCGTGATGGAGCCGTTGCGGCCCTCCACACGACCGGCGCGCTCGTAAATGGTGGCCAGATCG GTGTACATGTAACCGGGGAAACCCCTACGGCCGGGCACTTCTTCTCGAGCGGCAGACACCTCACGCAACGCCTCCGCGTACGACGAC ATGTCGGTCAAGATGACCAGCACGTGCTTCTCGCACTGGTAGGCCAAGAATTCGGCGGCCGTCAGAGCCAAACGCGGCGTGATGATG CGCTCGATGGTCGGATCGTTGGCCAAGTTCAAGAACAGACACACGTTCTCCATCGAGCCGTTCTCTTCGAAGTCCTGCTTGAAGAACCT GGCAGTTTCCATGTTGACACCCATAGCAGCAAACACAATAGCAAAGTTGTCTTCATGGTCATCCAGCACAGACTTGCCAGGTACTTTGA CCAAGCCAGCCTGCCTACAAATCTGGGCTGCAATCTCATTGTGGGGCAGCCCAGCGGCGGAGAAGATCGGAATCTTCTGCCCTCTGG CGATAGAGTTCATCACGTCGATGGCCGTGATCCCAGTCTGGATCATTTCCTCGGGATAAATACGCGACCACGGGTTGATCGGCTGTCC TTGGATGTCGAGGTAGTCCTCAGCCAGGATCGGGGGACCTTTATCAATGGGTTTTCCTGATCCATTGAAGACACGTCCCAGCATATCTT CTGATACTGGAGTTCTTAGAATATCTCCAGTGAACTCACACACCGTGTTCTTAGCATCAATACCTGATGTGCCTCAAATACCTGAACAA CTGCCTTTGATCCACTGACTTCCAAAACTTGTCCAGATCGTAGAGTTCCATCTGCCAATTTGAGCTGGACAATTTCATTGAATTTTGGAA ACTTGACATCCTCAAGAATGACCAGTAAGGGCGAATTCGACCCAGCTTTCTTGTACAAAGTGGTGATATCACTAGTGCGGCCGCCTGCA GGTCGACCATATGGTCGACCTGCAGGCGGCCGCACTAGTGATGCTGTTATGTTCAGTGTCAAGCTGACCTGCAAACACGTTAAATGCT AAGAAGTTAGAATATATGAGACACGTTAACTGGTATATGAATAAGCTGTAAATAACCGAGTATAAACTCATTAACTAATATCACCTCTAGA GTATAATATAATCAAATTCGACAATTTGACTTTCAAGAGTAGGCTAATGTAAAATCTTTATATATTTCTACAATGTTCAAAGAAACAGTTGC ATCTAAACCCCTATGGCCATCAAATTCAATGAACGCTAAGCTGATCCGGCGAGATTTTCAGGAGCTAAGGAAGCTAAAATGGAGAAAAA AATCACTGGATATACCACCGTGATATATCCCAATGGCATCGTAAAGAACATTTTGAGGCATTTCAGTCAGTTGCTCAATGTACCTATAA CCAGACCGTTCAGCTGGATATTACGGCCTTTTTAAAGACCGTAAAGAAAAATAAGCACAAGTTTTATCCGGCCTTTATTCACATTCTTGC CCGCCTGATGAATGCTCATCCGGAATTCCGTATGGCAATGAAAGACGGTGAGCTGGTGATATGGGATAGTGTTCACCCTTGTTACACC GTTTTCCATGAGCAAACTGAAACGTTTTCATCGCTCTGGAGTGAATACCACGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGAT GTGGCGTGTTACGGTGAAAACCTGGCCTATTTCCCTAAAGGGTTTATTGAGAATATGTTTTTCGTCTCAGCCAATCCCTGGGTGAGTTTC ACCAGTTTTGATTTAAACGTGGCCAATATGGACAACTTCTTCGCCCCCGTTTTCACCATGGGCAAATATTATACGCAAGGCGACAAGGT GCTGATGCCGCTGGCGATCAGGTCATCATGCCGTCTGTGATGGCTCCATGTCGGCAGAATGCTTAATGAATTACAACAGTACTGCG ATGAGTGGCAGGGCGGGGCGTAAACGCGTGGATCAGCTTAATATGACTCTCAATAAAGTCTCATACCAACAAGTGCCACCTTATTCAAC CATCAAGAAAAAAGCCAAAATTTATGCTACTCTAAGGAAAACTTCACTAAAGAAGACGATTTAGAGTGTTTTACCAAGAATTTCTGTCATC TACTAAACAACTAAAGATCGGTGTGATACAAAACCTAATCTCATTAAAGTTTATGCTAAAATAAGCATAATTTTACCCACTAAGCGTGAC CAGATAAACATAACTCAGCACACCAGAGCATATATATTGGTGGCTCAAATCATAGAAACTTACAGTGAAGACACAGAAAGCCGTAAGAA GAGGCAAGAGTATGAAACCTTACCTCATCATTTCCATGAGGTTGCTTCTGATCCCGCGGGATATCACCACTTTGTACAAGAAAGCTGGG TCGAATTCGCCCTTACTGGTCATTCTTGAGGATGTCAAGTTTCCAAAATTCAATGAAATTGTCCAGCTCAAATTGGCAGATGGAACTCTA CGATCTGGACAAGTTTTGGAAGTCAGTGGATCAAAGGCAGTTGTTCAGGTATTTGAAGGCACATCAGGTATTGATGCTAAGAACACGGT GTGTGAGTTCACTGGAGATATTCTAAGAACTCCAGTATCAGAAGATATGCTGGGACGTGTCTTCAATGGATCAGGAAAACCCATTGATA AAGGTCCCCCGATCCTGGCTGAGGACTACCTCGACATCCAAGGACAGCCGATCAACCCGTGGTCGCGTATTTATCCCGAGGAAATGAT CCAGACTGGGATCACGGCCATCGACGTGATGAACTCTATCGCCAGAGGGCAGAAGATTCCGATCTTCTCCGCCGCTGGGCTGCCCCA CAATGAGATTGCAGCCCAGATTTGTAGGCAGGCTGGCTTGGTCAAAGTACCTGGCAAGTCTGTGCTGGATGACCATGAAGACAACTTT GCTATTGTGTTTGCTGCTATGGGTGTCAACATGGAAACTGCCAGGTTCTTCAAGCAGGACTTCGAAGAGAACGGCTCGATGGAGAACG TGTGTCTGTTCTTGAACTTGGCCAACGATCCGACCATCGAGCGCATCATCACGCCGCGTTTGGCTCTGACGGCCGCCGAATTCTTGGC CTACCAGTGCGAGAAGCACGTGCTGGTCATCTTGACCGACATGTCGTCGTACGCGGAGGCGTTGCGTGAGGTGTCTGCCGCTCGAGA AGAAGTGCCCGGCCGTAGGGGTTTCCCCGGTTACATGTACACCGATCTGGCCACCATTTACGAGCGCGCCGGTCGTGTGGAGGGCCG CAACGGCTCCATCACGCAGATCCCCATCTTGACTATGCCCAA PC027 SEQ ID NO: 512 GGGCCAAGCACAGCGAAATGCAGCAAGCTAACTTGAAAGCACTACCAGAAGGAGCTGAAATCAGAGATGGAGAACGTTTGCCAGTCAC AGTAAAGGACATGGGAGCATGCGAGATTTACCCACAAACAATCCAACACAACCCCAATGGGCGGTTTGTAGTGGTTTGTGGTGATGGA GAATACATAATATACACGGCTATGGCCCTTCGTAACAAAGCATTTGGTAGCGCTCAAGAATTTGTATGGGCACAGGACTCCAGTGAATA TGCCATCCGCGAATCCGGATCCACCATTCGAATCTTCAAGAATTTCAAAGAAAAAAAGAATTTCAAGTCCGACTTTGGTGCCGAAGGAAT CTATGGTGGTTTTCTCTTGGGTGTGAAATCAGTGTCTGGCTTAGCTTTCTATGACTGGGAAACGCTTGAGTTAGTAAGGCGCATTGAAAT ACAGCCTAGAGCTATCTACTGGTCAGATAGTGGCAAGTTGGTATGCCTTGCTACCGAAGATAGCTATTTCATATTGTCCTATGACTCTGA CCAAGTCCAGAAAGCTAGAGATAACAACCAAGTGCCGAAGATGGAGTGGAGGCTGCCTTTGATGTCCTAGGTGAAATAAATGAATCC GTAAGAACAGGTCTTTGGGTAGGAGACTGCTTCATTTACACAAACGCAGTCAACCGTATCAACTACTTTGTGGGTGGTGAATTGGTAAC TATTGCACATCTGGACCGTCCTCTATATGTCCTGGGCTATGTACCTAGAGATGACAGGTTATACTTGGTTGATAAAGAGTTAGGAGTAGT CAGCTATCAATTGCTATTATCTGTACTCGAATATCAGACTGCAGTCATGCGACGAGACTTCCCAACGGCTGATCGAGTATTGCCTTCAAT TCCAAAAGAACACCGCACTAGGGTGGCACAAAGGGCGAATTCGACCCAGCTTTCTTGTACAAAGTGGTGATATCACTAGTGCGGCCGC CTGCAGGTCGACCATATGGTCGACCTGCAGGCGGCCGCACTAGTGATGCTGTTATGTTCAGTGTCAAGCTGACCTGCAAACACGTTAA ATGCTAAGAAGTTAGAATATATGAGACACGTTAACTGGTATATGAATAAGCTGTAAATAACCGAGTATAAACTCATTAACTAATATCACCT CTAGAGTATAATATAATCAAATTCGACAATTTGACTTTCAAGAGTAGGCTAATGTAAAATCTTTATATATTTCTACAATGTTCAAAGAAACA GTTGCATCTAAACCCCTATGGCCATCAAATTCAATGAACGCTAAGCTGATCCGGCGAGATTTTCAGGAGCTAAGGAAGCTAAAATGGAG AAAAAAATCACTGGATATACCACCGTTGATATATCCCAATGGCATCGTAAAGAACATTTTGAGGCATTTCAGTCAGTTGCTCAATGTACC TATAACCAGACCGTTCAGCTGGATATTACGGCCTTTTTAAAGACCGTAAAGAAAAATAAGCACAAGTTTTATCCGGCCTTTATTCACATTC TTGCCCGCCTGATGAATGCTCATCCGGAATTCCGTATGGCAATGAAAGACGGTGAGCTGGTGATATGGGATAGTGTTCACCCTTGTTAC ACCGTTTTCCATGAGCAAACTGAAACGTTTTCATCGCTCTGGAGTGAATACCACGACGATTTCCGGCAGTTTCTACACATATATTCGCAA GATGTGGCGTGTTACGGTGAAAACCTGGCCTATTTCCCTAAAGGGTTTATTGAGAATATGTTTTTCGTCTCAGCCAATCCCTGGGTGAG TTTCACCAGTTTTGATTTAAACGTGGCCAATATGGACAACTTCTTCGCCCCCGTTTTCACCATGGGCAAATATTATACGCAAGGCGACAA GGTGCTGATGCCGCTGGCGATTCAGGTCATCATGCCGTCTGTGATGGCTCCATGTCGGCAGAATGCTTAATGAATTACAACAGTACT GCGATGAGTGGCAGGGCGGGGCGTAAACGCGTGGATCAGCTTAATATGACTCTCAATAAAGTCTCATACCAACAAGTGCCACCTTATT CAACCATCAAGAAAAAAGCCAAAATTTATGCTACTCTAAGGAAAACTTCACTAAAGAAGACGATTTAGAGTGTTTTACCAAGAATTTCTGT CATCTTACTAAACAACTAAAGATCGGTGTGATACAAAACCTAATCTCATTAAAGTTTATGCTAAAATAAGCATAATTTTACCCACTAAGCG TGACCAGATAAACATAACTCAGCACACCAGAGCATATATATTGGTGGCTCAAATCATAGAAACTTACAGTGAAGACACAGAAAGCCGTAA GAAGAGGCAAGAGTATGAAACCTTACCTCATCATTTCCATGAGGTTGCTTCTGATCCCGCGGGATATCACCACTTTGTACAAGAAAGCT GGGTCGAATTCGCCCTTTGTGCCACCCTAGTGCGGTGTTCTTTTGGAATTGAAGGCAATACTCGATCAGCCGTTGGGAAGTCTCGTCG CATGACTGCAGTCTGATATTCGAGTACAGATAATAGCAATTGATAGCTGACTACTCCTAACTCTTTATCAACCAAGTATAACCTGTCATCT CTAGGTACATAGCCCAGGACATATAGAGGACGGTCCAGATGTGCAATAGTTACCAATTCACCACCCACAAAGTAGTTGATACGGTTGAC TGCGTTTGTGTAAATGAAGCAGTCTCCTACCCAAAGACCTGTTCTTACGGATTCATTTATTTCACCTAGGACATCAAAGGCAGCCTCCAC TCCATCTTCGGCAACTTGGTTGTTATCTCTAGCTTTCTGGACTTGGTCAGAGTCATAGGACAATATGAAATAGCTATCTTCGGTAGCAAG GCATACCAACTTGCCACTATCTGACCAGTAGATAGCTCTAGGCTGTATTTCAATGCGCCTTACTAACTCAAGCGTTTCCCAGTCATAGAA AGCTAAGCCAGACACTGATTTCACACCCAAGAGAAAACCACCATAGATTCCTTCGGCACCAAAGTCGGACTTGAAATTCTTTTTTTCTTT GAAATTCTTGAAGATTCGAATGGTGGATCCGGATTCGCGGATGGCATATTCACTGGAGTCCTGTGCCCATACAAATTCTTGAGCGCTAC CAAATGCTTTGTTACGAAGGGCCATAGCCGTGTATATTATGTATTCTCCATCACCACAAACCACTACAAACCGCCCATTGGGGTTGTGTT GGATTGTTTGTGGGTAAATCTCGCATGCTCCCATGTCCTTTACTGTGACTGGCAAACGTTCTCCATCTCTGATTCAGCTCCTTCTGGTA GTGCTTTCAAGTTAGCTTGCTGCATTTCGCTGTGCTTGGCCC -
TABLE 9-MP Hairpin Sequence Target ID 5′ → 3′ MP001 SEQ ID NO: 1066 GTTTAAACGCACCCAAAGCATGGATGTTGGACAAATCGGGGGGTGTCTTCGCTCCACGTCCAAGCACCGGTCCACACAAACTTCGTG AATCACTACCGTTATTGATCTTGCGTAATCGTTTGAAGTATGCACTTACTGGTGCCGAAGTCACCAAGATTGTCATGCAAAGATTA ATCAAGGTTGATGGCAAAGTCCGTACCGACCCTAATTATCCAGCCGGTTTTATGGATGTTATATCTATCCAAAAGACCAGTGAGCACT TTAGATTGATCTATGATGTGAAAGGTCGTTTCACCATCCACAGAATTACTCCTGAAGAAGCAAAATACAAGTGTGTAAAGTAAAGAGG GTACAAACTGGACCCAAAGGTGTGCCATTTTTAACTACTCATGATGGCCGTACTATTCGCTACCCTGACCCTAACATCAAGGTTAATG ACACTATTAGATACGATATTGCATCATCTAAAATTTTGGATCATATCCGTTTTGAAACTGGAAACTTGTGCATGATAACTGGAGGTCGC AATTTAGGGCGTGTTGGTATTGAAGGGCGAATTCGACCCAGCTTTCTTGTACAAAGTGGTGATATCACTAGTGCGGCCGCCTGCAGG TCGACCATATGGTCGACCTGCAGGCGGCCGCACTAGTGATGCTGTTATGTTCAGTGTCAAGCTGACCTGCAAACACGTTAAATGCTA AGAAGTTAGAATATATGAGACACGTTAACTGGTATATGAATAAGCTGTAAATAACCGAGTATAAACTCATTAACTAATATCACCTCTAGA GTATAATATAATCAAATTCGACAATTTGACTTTCAAGAGTAGGCTAATGTAAAATCTTTATATATTCTACAATGTTCAAAGAAACAGTTG CATCTAAACCCCTATGGCCATCAAATTCAATGAACGCTAAGCTGATCCGGCGAGATTTTCAGGAGCTAAGGAAGCTAAAATGGAGAAA AAAATCACTGGATATACCACCGTTGATATATCCCAATGGCATCGTAAAGAACATTTTGAGGCATTTCAGTCAGTTGCTCAATGTACCTA TAACCAGACCGTTCAGCTGGATATTACGGCCTTTTTAAAGACCGTAAAGAAAAATAAGCACAAGTTTTATCCGGCCTTTATTCACATTC TTGCCCGCCTGATGAATGCTCATCCGGAATTCCGTATGGCAATGAAAGACGGTGAGCTGGTGATATGGGATAGTGTTCACCCTTGTT ACACCGTTTTCCATGAGCAAACTGAAACGTTTTCATCGCTCTGGAGTGAATACCACGACGATTTCCGGCAGTTTCTACACATATATTCG CAAGATGTGGCGTGTTACGGTGAAAACCTGGCCTATTTCCCTAAAGGGTTTATTGAGAATATGTTTTTCGTCTCAGCCAATCCCTGGG TGAGTTTCACCAGTTTTGATTTAAACGTGGCCAATATGGACAACTTCTTCGCCCCCGTTTTCACCATGGGCAAATATTATACGCAAGGC GACAAGGTGCTGATGCCGCTGGCGATTCAGGTTCATCATGCCGTCTGTGATGGCTTCCATGTCGGCAGAATGCTTAATGAATTACAA CAGTACTGCGATGAGTGGCAGGGCGGGGCGTAAACGCGTGGATCAGCTTAATATGACTCTCAATAAAGTCTCATACCAACAAGTGCC ACCTTATTCAACCATCAAGAAAAAAGCCAAAATTTATGCTACTCTAAGGAAAACTTCACTAAAGAAGACGATTTAGAGTGTTTTACCAA GAATTTCTGTCATCTTACTAAACAACTAAAGATCGGTGTGATACAAAACCTAATCTCATTAAAGTTTATGCTAAAATAAGCATAATTTTAC CCACTAAGCGTGACCAGATAAACATAACTCAGCACACCAGAGCATATATATTGGTGGCTCAAATCATAGAAACTTACAGTGAAGACAC AGAAAGCCGTAAGAAGAGGCAAGAGTATGAAACCTTACCTCATCATTTCCATGAGGTTGCTTCTGATCCCGCGGGATATCACCACTTT GTACAAGAAAGCTGGGTCGAATTCGCCCTTCAATACCAACACGCCCTAAATTGCGACCTCCAGTTATCATGCACAAGTTTCCAGTTTC AAAACGGATATGATCCAAAATTTTAGATGATGCAATATCGTATCTAATAGTGTCATTAACCTTGATGTTAGGGTCAGGGTAGCGAATAG TACGGCCATCATGAGTAGTTAAAAATGGCACACCTTTGGGTCCAGTTTGTACCCTCTTTACTTTACACAACTTGTATTTTGCTTCTTCA GGAGTAATTCTGTGGATGGTGAAACGACCTTTCACATCATAGATCAATCTAAAGTGCTCACTGGTCTTTTGGATAGATATAACATCCAT AAAACCGGCTGGATAATTAGGGTCGGTACGGACTTTGCCATCAACCTTGATTAATCTTTGCATGACAATCTTGGTGACTTCGGCACCA GTAAGTGCATACTTCAAACGATTACGCAAGAAGATCAATAACGGTAGTGATTCACGAAGTTTGTGTGGACCGGTGCTTGGACGTGGA GCGAAGACACCCCCCGATTTGTCCAACATCCATGCTTTGGGTGCGTTTAAAC MP002 SEQ ID NO: 1067 GCTGATTTAAGTGCATCTGCTGCAGTTTTCATGGTAGTCAATACTGCTGTATTTGTGTTGGCACCTTCTAATGCCTCCCGCTGTTGTTC AATAGTTACATGGTACCATCAATTTGGGCTAATTGTTGTTCGTACCGTTTCTTACGCTTCAATGCTTGCAATGCAGCTCGTTTATTAGT TGTACCATTTTTTTTGGCTATCGCTACTTCTTGTTCAATTTTTTTTTCTAAAAATTCTTGTTTCTTTATCAGCATCTCTTCAGTGGATCGAA GCTTTTGTATCGCATCTTCGGTTGATGGTCCCTTCTCTTCCTTTTTGCCACCAAGGGCGAATTCGACCCAGCTTTCTTGTACAAAGTG GTGATATCACTAGTGCGGCCGCCTGCAGGTCGACCATATGGTCGACCTGCAGGCGGCCGCACTAGTGATGCTGTTATGTTCAGTGT CAAGCTGACCTGCAAACACGTTAAATGCTAAGAAGTTAGAATATATGAGACACGTTAACTGGTATATGAATAAGCTGTAAATAACCGAG TATAAACTCATTAACTAATATCACCTCTAGAGTATAATATAATCAAATTCGACAATTTGACTTTCAAGAGTAGGCTAATGTAAAATCTTTA TATATTTCTACAATGTTCAAAGAAACAGTTGCATCTAAACCCCTATGGCCATCAAATTCAATGAACGCTAAGCTGATCCGGCGAGATTT TCAGGAGCTAAGGAAGCTAAAATGGAGAAAAAAATCACTGGATATACCACCGTTGATATATCCCAATGGCATCGTAAAGAACATTTTG AGGCATTTCAGTCAGTTGCTCAATGTACCTATAACCAGACCGTTCAGCTGGATATTACGGCCTTTTTAAAGACCGTAAAGAAAAATAAG CACAAGTTTTTATCCGGCCTTTATTCACATTCTTGCCCGCCTGATGAATGCTCATCCGGAATTCCGTATGGCAATGAAAGACGGTGAGC TGGTGATATGGGATAGTGTTCACCCTTGTTTACACCGTTTTCCATGAGCAAACTGAAACGTTTTCATCGCTCTGGAGTGAATACCACGA CGATTTCCGGCAGTTTCTACACATATATTCGCAAGATGTGGCGTGTTACGGTGAAAACCTGGCCTATTTCCCTAAAGGGTTTATTGAG AATATGTTTTTCGTCTCAGCCAATCCCTGGGTGAGTTTCACCAGTTTTGATTTAAACGTGGCCAATATGGACAACTTCTTCGCCCCCGT TTTCACCATGGGCAAATATTATACGCAAGGCGACAAGGTGCTGATGCCGCTGGCGATTCAGGTTCATCATGCCGTCTGTGATGGCTT CCATGTCGGCAGAATGCTTAATGAATTACAACAGTACTGCGATGAGTGGCAGGGCGGGGCGTAAACGCGTGGATCAGCTTAATATGA CTCTCAATAAAGTCTCATACCAACAAGTGCCACCTTATTCAACCATCAAGAAAAAAGCCAAAATTTTATGCTACTCTAAGGAAAACTTCA CTAAAGAAGACGATTTAGAGTGTTTTACCAAGAATTTCTGTCATCTTACTAAACAACTAAAGATCGGTGTGATACAAAACCTAATCTCAT TAAAGTTTATGCTAAAATAAGCATAATTTTACCCACTAAGCGTGACCAGATAAACATAACTCAGCACACCAGAGCATATATATTGGTGG CTCAAATCATAGAAACTTACAGTGAAGACACAGAAAGCCGTAAGAAGAGGCAAGAGTATGAAACCTTACCTCATCATTTCCATGAGGT TGCTTCTGATCCCGCGGGATATCACCACTTTGTACAAGAAAGCTGGGTCGAATTCGCCCTTGGTGGCAAAAAGGAAGAGAAGGGACC ATCAACCGAAGATGCGATACAAAAGCTTCGATCCACTGAAGAGATGCTGATAAAGAAACAAGAATTTTTAGAAAAAAAAATTGAACAAG AAGTAGCGATAGCCAAAAAAAATGGTACAACTAATAAACGAGCTGCATTGCAAGCATTGAAGCGTAAGAAACGGTACGAACAACAATT AGCCCAAATTGATGGTACCATGTTAACTATTGAACAACAGCGGGAGGCATTAGAAGGTGCCAACACAAATACAGCAGTATTGACTACC ATGAAAACTGCAGCAGATGCACTTAAATCAGC MP010 SEQ ID NO: 1068 CAGACCCTGTTCAGAATATGATGCATGTTAGTGCTGCATTTGATCAAGAAGCATCTGCCGTTTTAATGGCTCGTATGGTAGTGAACCG TGCTGAAACTGAGGATAGTCCAGATGTGATGCGTTGGGCTGATCGTACGCTTATACGCTTGTGTCAAAAATTTGGTGATTATCAAAAA GATGATCCAAATAGTTTCCGATTGCCAGAAAACTTCAGTTTATATCCACAGTTCATGTATCATTTAAGAAGGTCTCAATTTCTACAAGTT TTTAATAATAGTCCTGATGAAACATCATATTATAGGCACATGTTGATGCGTGAAGATGTTACCCAAAGTTTAATCATGATACAGCCAATT CTGTATAGCTATAGTTTTAATGGTAGGCCAGAACCTGTACTTTTGGATACCAGTAGTATTCAACCTGATAAAATATTATTGATGGACAC ATTTTTCCATATTTTGATATTCCATGGAGAGACTATTGCTCAATGGAGAGCAATGGATTATCAAAATAGACCAGAGTATAGTAACCTCA AGCAGTTGCTTCAAGCCCCCGTTGATGATGCTCAGGAAATTCTCAAAACTCGATTCCCAATGCAAGGGCGAATTCGACCCAGCTTTCT TGTACAAAGTGGTGATATCACTAGTGCGGCCGCCTGCAGGTCGACCATATGGTCGACCTGCAGGCGGCCGCACTAGTGATGCTGTT ATGTTTCAGTGTCAAGCTGACCTGCAAACACGTTAAATGCTAAGAAGTTAGAATATATGAGACACGTTAACTGGTATATGAATAAGCTGT AAATAACCGAGTATAAACTCATTAACTAATATCACCTCTAGAGTATAATATAATCAAATTCGACAATTTGACTTTCAAGAGTAGGCTAAT GTAAAATCTTTATATATTTCTACAATGTTCAAAGAAACAGTTTGCATCTAAACCCCTATGGCCATCAAATTCAATGAACGCTAAGCTGATC CGGCGAGATTTTCAGGAGCTAAGGAAGCTTAAAATGGAGAAAAAAATCACTGGATATACCACCGTTGATATATCCCAATGGCATCGTAA AGAACATTTTGAGGCATTTCAGTCAGTTGCTCAATGTACCTATAACCAGACCGTTCAGCTGGATATTACGGCCTTTTTAAAGACCGTAA AGAAAAATAAGCACAAGTTTTATCCGGCCTTTATTCACATTCTTGCCCGCCTGATGAATGCTCATCCGGAATTCCGTATGGCAATGAAA GACGGTGAGCTGGTGATATGGGATAGTGTTCACCCTTGTTACACCGTTTTCCATTAGCAAACTGAAACGTTTTCATCGCTCTGGAGTG AATACCACGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGATGTGGCGTGTGACGGTGAAAACCTGGCCTATTTCCCTAAAGG GTTTATTGAGAATATGTTTTTCGTCTCAGCCAATCCCTGGGTGAGTTTCACCAGTTTTGATTTAAACGTGGCCAATATGGACAACTTCT TCGCCCCCGTTTTCACCATGGGCAAATATTATACGCAAGGCGACAAGGTGCTGATGCCGCTGGCGATTCAGGTTCATCATGCCGTCT GTGATGGCTTCCATGTCGGCAGAATGCTTAATGAATTACAACAGTACTGCGATGAGTGGCAGGGCGGGGCGTAAACGCGTGGATCA GCTTAATATGACTCTCAATAAAGTCTCATACCAACAAGTGCCACCTTATTCAACCATCAAGAAAAAAGCCAAAATTTATGCTACTCTAAG GAAAACTTCACTAAAGAAGACGATTTAGAGTGTTTTTACCAAGAATTTCTGTCATCTTACTAAACAACTAAAGATCGGTGTGATACAAAA CCTAATCTCATTAAAGTTTATGCTAAAATAAGCATAATTTTACCCACTAAGCGTGACCAGATAAACATAACTCAGCACACCAGAGCATA TATATTGGTGGCTCAAATCATAGAAACTTACAGTGAAGACACAGAAAGCCGTAAGAAGAGGCAAGAGTATGAAACCTTACCTCATCAT TTCCATGAGGTTGCTTCTGATCCCGCGGGATATCACCACTTTGTACAAGAAAGCTGGGTCGAATTCGCCCTTGCATTGGGAATCGAG TTTTGAGAATTTCCTGAGCATCATCAACGGGGGCTTGAAGCAACTGCTTGAGGTTACTATACTCTGGTCTATTTTGATAATCCATTGCT CTCCATTGAGCAATAGTCTCTCCATGGAATATCAAAATATGGAAAAATGTGTCCATCAATAATATTTTATCAGGTTGAATACTACTGGTA TCCAAAAGTACAGGTTCTGGCCTACCATTAAAACTATAGCTATACAGAATTGGCTGTATCATGATTAAACTTTGGGTAACATCTTCACG CATCAACATGTGCCTATAATATGATGTTTTCATCAGGACTATTATTAAAAACTTGTAGAAATTGAGACCTTCTTAAATGATACATGAACTG TGGATATAAACTGAAGTTTTCTGGCAATCGGAAACTATTTGGATCATCTTTTTGATAATCACCAAATTTTTGACACAAGCGTATAAGCGT ACGATCAGCCCAACGCATCACATCTGGACTATCCTCAGTTTTCAGCACGGTTCACTACCATACGAGCCATTAAAACGGCAGATGCTTCT TGATCAAATGCAGCACTAACATGCATCATATTCTGAACAGGGTCTG MP016 SEQ ID NO: 1069 GTTTTCAATGGCAGTGGAAAGCCGATAGATAAAGGACCTCCTATTTTGGCTGAAGATTATTTGGATATTGAAGGCCAACCTATTAATCC ATACTCCAGAACATATCCTCAAGAAATGATTCAAACTGGTATTTCAGCTATTGATATCATGAACTCTATTGCTCGTGGACAAAAAATTCC AATATTTTCAGCTGCAGGTTTACCACATAATGAGATTGCTGCTCAAATTTGTAGACAAGCTGGTCTCGTTAAAAAACCTGGTAAATCAG TTCTTGACGATCATGAAGACAATTTTGCTATAGTATTTGCTGCTATGGGTGTTAATATGGAAACAGCCAGATTCTTTAAACAAGATTTTG AGGAAAATGGTTCAATGGAGAATGTTTGTTTGTTCTTGAATTTAGCTAATGATCCTACTATTGAGCGTATCATTACACCACGAAGGGCG AATTCGACCCAGCTTTCTTGTACAAAGTGGTGATATCACTAGTGCGGCCGCCTGCAGGTCGACCATATGGTCGACCTGCAGGCGGCC GCACTAGTGATGCTGTTATGTTCAGTGTCAAGCTGACCTGCAAACACGTTAAATGCTAAGAAGTTAGAATATATGAGACACGTTAACT GGTATATGAATAAGCTGTAAATAACCGAGTATAAACTCATTAACTAATATCACCTCTAGAGTATAATATAATCAAATTCGACAATTTGAC TTTCAAGAGTAGGCTAATGTAAAATCTTTATATATTTCTACAATGTTCAAAGAAACAGTTGCATCTAAACCCCTATGGCCATCAAATTCA ATGAACGCTAAGCTGATCCGGCGAGATTTTCAGGAGCTAAGGAAGCTAAAATGGAGAAAAAAATCACTGGATATACCACCGTTGATAT ATCCCAATGGCATCGTAAAGAACATTTTGAGGCATTTCAGTCAGTTGCTCAATGTACCTATAACCAGACCGTTCAGCTGGATATTTACG GCCTTTTTAAAGACCGTAAAGAAAAATAAGCACAAGTTTTATCCGGCCTTTATTTCACATTCTTGCCCGCCTGATGAATGCTCATCCGGA ATTCCGTATGGCAATGAAAGACGGTGAGCTGGTGATATGGGATAGTGTTCACCCTTGTTACACCGTTTTCCATGAGCAAACTGAAACG TTTTCATCGCTCTGGAGTGAATACCACGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGATGTGGCGTGTTACGGTGAAAACC TGGCCTATTTCCCTAAAGGGTTTATTGAGAATATGTTTTTCGTCTCAGCCAATCCCTGGGTGAGTTTCACCAGTTTTGATTTAAACGTG GCCAATATGGACAACTTCTTCGCCCCCGTTTTCACCATGGGCAAATATTATACGCAAGGCGACAAGGTGCTGATGCCGCTGGCGATT CAGGTTCATCATGCCGTCTGTGATGGCTTCCATGTCGGCAGAATGCTTAATGAATTACAACAGTACTGCGATGAGTGGCAGGGCGGG GCGTAAACGCGTGGATCAGCTTAATATGACTCTCAATAAAGTCTCATACCAACAAGTGCCACCTTATTCAACCATCAAGAAAAAAGCC AAAATTTATGCTACTCTAAGGAAAACTTCACTAAAGAAGACGATTTAGAGTGTTTTACCAAGAATTTCTGTCATCTTACTAAACAACTAA AGATCGGTGTGATACAAAACCTAATCTCATTAAAGTTTATGCTAAAATAAGCATAATTTTACCCACTAAGCGTGACCAGATAAACATAAC TCAGCACACCAGAGCATATATATTGGTGGCTCAAATCATAGAAACTTACAGTGAAGACACAGAAAGCCGTAAGAAGAGGCAAGAGTAT GAAACCTTACCTCATCATTTCCATGAGGTTGCTTCTGATCCCGCGGGATATCACCACTTTGTACAAGAAAGCTGGGTCGAATTCGCCC TTCGTGGTGTAATGATACGCTCAATAGTAGGATCATTAGCTAAATTCAAGAACAAACAAACATTCTCCATTGAACCATTTTCCTCAAAAT CTTGTTTAAAGAATCTGGCTGTTTCCATATTAACACCCATAGCAGCAAATACTATAGCAAAATTGTCTTCATGATCGTCAAGAACTGATT TACCAGGTTTTTTAACGAGACCAGCTTGTCTACAAATTTGAGCAGCAATCTCATTATGTGGTAAACCTGCAGCTGAAAATATTGGAATT TTTTGTCCACGAGCAATAGAGTTCATGATATCAATAGCTGAAATACCAGTTTGAATCATTTCTTGAGGATATGTTCTGGAGTATGGATT AATAGGTTGGCCTTCAATATCCAAATAATCTTCAGCCAAAATAGGAGGTCCTTTATCTATCGGCTTTTCCACTGCCATTGAAAAC MP027 SEQ ID NO: 1070 CCAAAAATACCATCTGCTCCACCTTCTGGTTTAAAAGACTTTTTTTCTTTAAAATTTTTAAAAACTTTGATTGTAGAAGAATTTTCTCTAA TGGCATACTCAGAATCAGAAGACCATACAAAATCCTGAGCGGAGCCAAATGCTTTATTACGCAAAGCCATTGATGTATATATAATATAC TCTCCATCACCACATACTACTAAAAATCTACCATTCGGATTATGAGATATTGACTGTGGATAAATTTCACAGCTACCCATGTCTTTAACT TGTATTGGTAAACGTTCACCATCTTTGATTTCGGCTCCTTCTGCTTGAAGCATCGCTTTAAGGTTAGCTTGTTGAATTTCACTATGACG TGCCCAAACAATTTTACCCCCATGAACATCCATTGACATTGCTGGCTCTTCACGACCAACTTTAACCATTATACTTCCTTCATCATAACC TAGAGCTACATTATTAGATCCCCGTAAGCAACAGATTGTCCATACACGTTCTAACCCATAGTTTAATGATGATTCTAATCGATAAGTAC CAGAATGCCAAATTCTGACGGTACCATCTTCTGAGCCAGTTAACACGATGGGAAGTTCTGGATGGAAACAAACGAGCAAGGGCGAAT TCGACCCAGCTTTCTTGTACAAAGTGGTGATATCACTAGTGCGGCCGCCTGCAGGTCGACCATATGGTCGACCTGCAGGCGGCCGC ACTAGTGATGCTGTTATGTTCAGTGTCAAGCTGACCTGCAAACACGTTAAATGCTAAGAAGTTAGAATATATGAGACACGTTAACTGGT ATATGAATAAGCTGTAATAACCGAGTATAAACTCATTAACTAATATCACCTCTAGAGTATAATATAATCAAATTCGACAATTTGACTTTC AAGAGTAGGCTAATGTAAAATCTTTATATATTTCTACAATGTTCAAAGAAACAGTTGCATCTAAACCCCTATGGCCATCAAATTCAATGA ACGCTAAGCTGATCCGGCGAGATTTTCAGGAGCTAAGGAAGCTAAAATGGAGAAAAAAATCACTGGATATACCACCGTTGATATATCC CAATGGCATCGTAAAGAACATTTTGAGGCATTTCAGTCAGTTGCTCAATGTACCTATAACCAGACCGTTCAGCTGGATATTACGGCCT TTTTAAAGACCGTAAAGAAAAATAAGCACAAGTTTTATCCGGCCTTTATTCACATTCTTGCCCGCCTGATGAATGCTCATCCGGAATTC CGTATGGCAATGAAAGACGGTGAGCTGGTGATATGGGATAGTGTTCACCCTTGTTACACCGTTTTCCATGAGCAAACTGAAACGTTTT CATCGCTCTGGAGTGAATACCACGACGATTTCCGGCAGTTTCTACACATATATTCGCAAGATGTGGCGTGTTACGGTGAAAACCTGG CCTATTTCCCTAAAGGGTTTATTGAGAATATGTTTTTCGTCTCAGCCAATCCCTGGGTGAGTTTTCACCAGTTTTGATTTAAACGTGGCC AATATGGACAACTTCTTCGCCCCCGTTTTCACCATGGGCAAATATTATACGCAAGGCGACAAGGTGCTGATGCCGCTGGCGATTCAG GTTCATCATGCCGTCTGTGATGGCTTCCATGTCGGCAGAATGCTTAATGAATTACAACAGTACTGCGATGAGTGGCAGGGCGGGGCG TAAACGCGTGGATCAGCTTAATATGACTCTCAATAAAGTCTCATACCAACAAGTGCCACCTTTATTCAACCATCAAGAAAAAAGCCAAAA TTTATGCTACTCTAAGGAAAACTTCACTAAAGAAGACGATTTAGAGTGTTTTACCAAGAATTTCTGTCATCTTACTAAACAACTAAGAT CGGTGTGATACAAAACCTAATCTCATTAAAGTTTATGCTAAAATAAGCATAATTTTACCCACTAAGCGTGACCAGATAAACATAACTCA GCACACCAGAGCATATATATTGGTGGCTCAAATCATAGAAACTTACAGTGAAGACACAGAAAGCCGTAAGAAGAGGCAAGAGTATGA AACCTTACCTCATCATTTCCATGAGGTTGCTTCTGATCCCGCGGGATATCACCACTTTGTACAAGAAAGCTGGGTCGAATTCGCCCTT GCTCGTTTGTTTCCATCCAGAACTTCCCATCGTGTTAACTGGCTCAGAAGATGGTACCGTCAGAATTTGGCATTCTGGTACTTATCGAT TAGAATCATCATTAAACTATGGGTTAGAACGTGTATGGACAATCTGTTGCTTACGGGGATCTAATAATGTAGCTCTAGGTTATGATGAA GGAAGTATAATGGTTAAAGTTGGTCGTGAAGAGCCAGCAATGTCAATGGATGTTCATGGGGGTAAAATTGTTTGGGCACGTCATAGT GAAATTCAACAAGCTAACCTTAAAGCGATGCTTCAAGCAGAAGGAGCCGAAATCAAAGATGGTGAACGTTTACCAATACAAGTTAAAG ACATGGGTAGCTGTGAAATTTATCCACAGTCAATATCTCATAATCCGAATGGTAGATTTTTAGTAGTATGTGGTGATGGAGAGTATATT ATATATACATCAATGGCTTTGCGTAATAAAGCATTTGGCTCCGCTCAGGATTTTGTATGGTCTTCTGATTCTGAGTATGCCATTAGAGA AAATTCTTCTACAATCAAAGTTTTTAAAAATTTTAAAGAAAAAAAGTCTTTTAAACCAGAAGGTGGAGCAGATGGTATTTTTGG -
TABLES 10-NL (a) Mean % survival (days post start) Survival RNAi 0 1 2 3 4 5 6 7 8 analysis1 gfp 100 98 90 82 68 60 44 32 20 − diet only 100 98 96 86 74 68 58 54 38 − NL002 100 98 90 76 68 34 6 0 0 + NL003 100 98 74 48 36 22 12 2 0 + NL005 100 100 74 56 40 20 16 6 4 + NL010 100 96 74 56 48 30 18 12 8 + Chi squared P value Sig. Dif.2 diet versus: NL002 29.06 <0.0001 Yes NL003 39.59 <0.0001 Yes NL005 29.55 <0.0001 Yes NL010 21.04 <0.0001 Yes gfp dsRNA versus: NL002 15.09 0.0001 Yes NL003 22.87 <0.0001 Yes NL005 15.12 <0.0001 Yes NL010 8.838 0.0029 Yes diet versus gfp dsRNA 4.030 0.0447 (~0.05) No 1= Data were analysed using Kaplan-Meier survival curve analysis 2alpha <0.05 -
TABLES 10-NL (b) Mean % survival (days post start) Survival RNAi 0 1 2 3 4 5 6 7 8 analysis1 gfp 100 96 84 82 76 70 54 50 44 − diet only 100 96 88 82 76 70 54 50 44 − NL009 100 94 75 63 42 30 24 22 14 + NL016 100 94 84 78 54 44 36 18 14 + Chi squared P value Sig. Dif.2 diet versus: NL009 11.98 0.0005 Yes NL016 8.98 0.0027 Yes gfp dsRNA versus: NL009 13.69 0.0002 Yes NL016 11.37 0.0007 Yes diet versus gfp dsRNA 0.03317 0.8555 No 1= Data were analysed using Kaplan-Meier survival curve analysis 2alpha <0.05 -
TABLES 10-NL (c) Mean % survival (days post start) Survival RNAi 0 1 2 3 4 5 6 7 8 analysis1 gfp 100 92 84 78 72 62 58 56 48 − diet only 100 84 72 68 64 58 52 42 42 − NL014 100 86 68 60 46 32 24 18 14 + NL018 100 82 70 54 40 30 18 14 12 + Chi squared P value Sig. Dif.2 diet versus: NL014 8.088 0.0045 Yes NL018 10.47 0.0012 Yes gfp dsRNA versus: NL014 14.55 0.0001 Yes NL018 17.64 <0.0001 Yes diet versus gfp dsRNA 0.6548 0.4184 No 1= Data were analysed using Kaplan-Meier survival curve analysis 2alpha <0.05 -
TABLES 10-NL (d) Mean % survival (days post start) Survival RNAi 0 1 2 3 4 5 6 7 8 9 analysis1 gfp 100 96 84 84 72 68 68 66 66 62 − diet only 100 96 86 82 74 72 70 70 66 58 − NL013 100 94 82 68 50 40 30 28 20 20 + NL015 100 100 72 30 18 12 8 6 6 6 + NL021 100 100 84 58 50 44 40 34 34 22 + Chi squared P value Sig. Dif.2 diet versus: NL013 15.73 <0.0001 Yes NL015 39.44 <0.0001 Yes NL021 12.75 0.0004 Yes gfp dsRNA versus: NL013 16.42 <0.0001 Yes NL015 39.15 <0.0001 Yes NL021 14.1 0.0002 Yes diet versus gfp dsRNA 0.1031 0.7481 No 1= Data were analysed using Kaplan-Meier survival curve analysis 2alpha <0.05 -
TABLE 11-NL Mean % survival (days post start) Survival NL002 RNAi 0 1 2 3 4 5 6 7 analysis1 diet only 100 100 96 90 86 78 78 78 − 1 μg/ μl 100 84 80 44 26 8 6 6 + 0.2 μg/ μl 100 84 60 12 8 4 2 2 + 0.08 μg/ μl 100 84 62 18 14 6 6 6 + 0.04 μg/ μl 100 84 48 24 22 22 22 22 + Chi squared P value Sig. Dif.2 diet versus: NL002 1 μg/μl 57.53 <0.0001 Yes NL002 0.2 μg/μl 74.54 <0.0001 Yes NL002 0.08 μg/μl 64 <0.0001 Yes NL002 0.04 μg/μl 39.49 <0.0001 Yes 1= Data were analysed using Kaplan-Meier survival curve analysis 2alpha <0.05
Claims (49)
1. An isolated nucleotide sequence comprising a nucleic acid sequence selected from the group comprising:
(i) sequences represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1066 to 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476, 2481 or 2486, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1066 to 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476, 2481 or 2486, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591, 596, 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783, 788, 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878, 883, 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, 1066 to 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672, 1677, 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090, 2095, 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354, 2359, 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476, 2481 or 2486, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 49 to 158, 275 to 472, 533 to 575, 621 to 767, 813 to 862, 908 to 1040, 1161 to 1571, 1730 to 2039, 2120 to 2338, 2384 to 2460, or a complement thereof.
2. A double stranded ribonucleotide sequence produced from the expression of a polynucleotide sequence of claim 1 , wherein ingestion of said double stranded ribonucleotide sequence by a plant insect pest inhibits the growth of said insect pest.
3. The double stranded ribonucleotide sequence of claim 2 , wherein ingestion of said sequence inhibits expression of a nucleotide sequence substantially complementary to said sequence.
4. A cell transformed with a polynucleotide comprising a nucleic acid sequence as defined in claim 1 , optionally operably linked to a regulatory sequence.
5. The cell of claim 4 , wherein said cell is a plant cell.
6. A plant transformed with a polynucleotide having a nucleic acid sequence as defined in claim 1 , said nucleic acid sequence optionally operably linked to a regulatory sequence.
7. The plant of claim 6 , wherein said sequence inhibits a pest biological activity.
8. The plant of claim 6 , wherein said sequence inhibits expression of a target sequence.
9. The plant of claim 8 wherein said target sequence is an insect, nematode or fungal sequence.
10. The plant of claim 6 , wherein said plant is cytoplasmic male sterile.
11. The plant of claim 6 , wherein said plant further comprises or expresses a pesticidal agent selected from the group consisting of a patatin, a Bacillus thuringiensis insecticidal protein, a Xenorhabdus insecticidal protein, a Photorhabdus insecticidal protein, a Bacillus laterosporous insecticidal protein, and a Bacillus sphearicus insecticidal protein.
12. The plant of claim 11 wherein said Bacillus thuringiensis insecticidal protein is selected from the group consisting of a Cry1, a Cry3, a TIC851, a CryET170, a Cry22, a binary insecticidal protein CryET33 and CryET34, a binary insecticidal protein CryET80 and CryET76, a binary insecticidal protein TIC100 and TIC101, and a binary insecticidal protein PS149B1.
13. The plant of claim 6 , wherein said plant is chosen from the group comprising alfalfa, apple, apricot, artichoke, asparagus, avocado, banana, barley, beans, beet, blackberry, blueberry, broccoli, brussel sprouts, cabbage, canola, carrot, cassaya, cauliflower, a cereal, celery, cherry, citrus, clemintine, coffee, corn, cotton, cucumber, eggplant, endive, eucalyptus, figes, grape, grapefruit, groundnuts, ground cherry, kiwifruit, lettuce, leek, lemon, lime, pine, maize, mango, melon, millet, mushroom, nut aot, okra, onion, orange, an ornamental plant or flower or tree, papaya, parsley, pea, peach, peanut, peat, pepper, persimmon, pineapple, plantain, plum, pomegranate, potato, pumpkin, radicchio, radish, rapeseed, raspberry, rice, rye, sorghum, soy, soybean, spinach, strawberry, sugarbeet, sugarcane, sunflower, sweet potato, tangerine, tea, tobacco, tomato, a vine, watermelon, wheat, yams and zucchini.
14. The plant of claim 6 , wherein said plant is resistant against infestation by an insect chosen from the group comprising Leptinotarsa spp. (e.g. L. decemlineata (Colorado potato beetle), L. juncta (false potato beetle), or L. texana (Texan false potato beetle)); Lema spp. (e.g. L. trilineata (three-lined potato beetle)); Epitrix spp. (e.g. E. cucumeris (potato flea beetle), E. hirtipennis (flea beetle), or E. tuberis (tuber flea beetle)); Epicauta spp. (e.g. E. vittata (striped blister beetle)); Epilachna spp. (e.g. E. varivetis (mexican bean beetle)); Phaedon spp. (e.g. P. cochleariae (mustard leaf beetle)); Nilaparvata spp. (e.g. N. lugens (brown planthopper)); Laodelphax spp. (e.g. L. striatellus (small brown planthopper)); Nephotettix spp. (e.g. N. virescens or N. cincticeps (green leafhopper), or N. nigropictus (rice leafhopper)); Sogatella spp. (e.g. S. furcifera (white-backed planthopper)); Acheta spp. (e.g. A. domesticus (house cricket)); Blissus spp. (e.g. B. leucopterus leucopterus (chinch bug)); Scotinophora spp. (e.g. S. vermidulate (rice blackbug)); Acrosternum spp. (e.g. A. hilare (green stink bug)); Parnara spp. (e.g. P. guttata (rice skipper)); Chilo spp. (e.g. C. suppressalis (rice striped stem borer), C. auricilius (gold-fringed stem borer), or C. polychrysus (dark-headed stem borer)); Chilotraea spp. (e.g. C. polychrysa (rice stalk borer)); Sesamia spp. (e.g. S. inferens (pink rice borer)); Tryporyza spp. (e.g. T. innotata (white rice borer), or T. incertulas (yellow rice borer)); Cnaphalocrocis spp. (e.g. C. medinalis (rice leafroller)); Agromyza spp. (e.g. A. oryzae (leafminer), or A. parvicornis (corn blot leafminer)); Diatraea spp. (e.g. D. saccharalis (sugarcane borer), or D. grandiosella (southwestern corn borer)); Narnaga spp. (e.g. N. aenescens (green rice caterpillar)); Xanthodes spp. (e.g. X. transversa (green caterpillar)); Spodoptera spp. (e.g. S. frugiperda (fall armyworm), S. exigua (beet armyworm), S. littoralis (climbing cutworm), or S. praefica (western yellowstriped armyworm)); Mythimna spp. (e.g. Mythmna (Pseudaletia) seperata (armyworm)); Helicoverpa spp. (e.g. H. zea (corn earworm)); Colaspis spp. (e.g. C. brunnea (grape colaspis)); Lissorhoptrus spp. (e.g. L. oryzophilus (rice water weevil)); Echinocnemus spp. (e.g. E. squamos (rice plant weevil)); Diclodispa spp. (e.g. D. armigera (rice hispa)); Oulema spp. (e.g. O. oryzae (leaf beetle); Sitophilus spp. (e.g. S. oryzae (rice weevil)); Pachydiplosis spp. (e.g. P. oryzae (rice gall midge)); Hydrellia spp. (e.g. H. griseola (small rice leafminer), or H. sasakii (rice stem maggot)); Chlorops spp. (e.g. C. oryzae (stem maggot)); Diabrotica spp. (e.g. D. virgifera virgifera (western corn rootworm), D. barberi (northern corn rootworm), D. undecimpunctata howardi (southern corn rootworm), D. virgifera zeae (Mexican corn rootworm); D. balteata (banded cucumber beetle)); Ostrinia spp. (e.g. O. nubilalis (European corn borer)); Agrotis spp. (e.g. A. ipsilon (black cutworm)); Elasmopalpus spp. (e.g. E. lignosellus (lesser cornstalk borer)); Melanotus spp. (wireworms); Cyclocephala spp. (e.g. C. borealis (northern masked chafer), or C. immaculata (southern masked chafer)); Popillia spp. (e.g. P. japonica (Japanese beetle)); Chaetocnema spp. (e.g. C. pulicaria (corn flea beetle)); Sphenophorus spp. (e.g. S. maidis (maize billbug)); Rhopalosiphum spp. (e.g. R. maidis (corn leaf aphid)); Anuraphis spp. (e.g. A. maidiradicis (corn root aphid)); Melanoplus spp. (e.g. M. femurrubrum (redlegged grasshopper) M. differentialis (differential grasshopper) or M. sanguinipes (migratory grasshopper)); Hylemya spp. (e.g. H. platura (seedcorn maggot)); Anaphothrips spp. (e.g. A. obscrurus (grass thrips)); Solenopsis spp. (e.g. S. milesta (thief ant)); or spp. (e.g. T. urticae (twospotted spider mite), T. cinnabarinus (carmine spider mite); Helicoverpa spp. (e.g. H. zea (cotton bollworm), or H. armigera (American bollworm)); Pectinophora spp. (e.g. P. gossypiella (pink bollworm)); Earias spp. (e.g. E. vittella (spotted bollworm)); Heliothis spp. (e.g. H. virescens (tobacco budworm)); Anthonomus spp. (e.g. A. grandis (boll weevil)); Pseudatomoscelis spp. (e.g. P. seriatus (cotton fleahopper)); Trialeurodes spp. (e.g. T. abutiloneus (banded-winged whitefly) T. vaporariorum (greenhouse whitefly)); Bemisia spp. (e.g. B. argentifolii (silverleaf whitefly)); Aphis spp. (e.g. A. gossypii (cotton aphid)); Lygus spp. (e.g. L. lineolaris (tarnished plant bug) or L. hesperus (western tarnished plant bug)); Euschistus spp. (e.g. E. conspersus (consperse stink bug)); Chlorochroa spp. (e.g. C. sayi (Say stinkbug)); Nezara spp. (e.g. N. viridula (southern green stinkbug)); Thrips spp. (e.g. T. tabaci (onion thrips)); Frankliniella spp. (e.g. F. fusca (tobacco thrips), or F. occidentalis (western flower thrips)); Empoasca spp. (e.g. E. fabae (potato leafhopper)); Myzus spp. (e.g. M. persicae (green peach aphid)); Paratrioza spp. (e.g. P. cockerelli (psyllid)); Conoderus spp. (e.g. C. falli (southern potato wireworm), or C. vespertinus (tobacco wireworm)); Phthorimaea spp. (e.g. P. operculella (potato tuberworm)); Macrosiphum spp. (e.g. M. euphorbiae (potato aphid)); Thyanta spp. (e.g. T. pallidovirens (redshouldered stinkbug)); Phthorimaea spp. (e.g. P. operculella (potato tuberworm)); Helicoverpa spp. (e.g. H. zea (tomato fruitworm); Keiferia spp. (e.g. K. lycopersicella (tomato pinworm)); Limonius spp. (wireworms); Manduca spp. (e.g. M. sexta (tobacco hornworm), or M. quinquemaculata (tomato hornworm)); Liriomyza spp. (e.g. L. sativae, L. trifolli or L. huidobrensis (leafminer)); Drosophilla spp. (e.g. D. melanogaster, D. yakuba, D. pseudoobscura or D. simulans); Carabus spp. (e.g. C. granulatus); Chironomus spp. (e.g. C. tentanus); Ctenocephalides spp. (e.g. C. felis (cat flea)); Diaprepes spp. (e.g. D. abbreviatus (root weevil)); Ips spp. (e.g. I. pini (pine engraver)); Tribolium spp. (e.g. T. castaneum (red floor beetle)); Glossina spp. (e.g. G. morsitans (tsetse fly)); Anopheles spp. (e.g. A. gambiae (malaria mosquito)); Helicoverpa spp. (e.g. H. armigera (African Bollworm)); Acyrthosiphon spp. (e.g. A. pisum (pea aphid)); Apis spp. (e.g. A. melifera (honey bee)); Homalodisca spp. (e.g. H. coagulate (glassy-winged sharpshooter)); Aedes spp. (e.g. Ae. aegypti (yellow fever mosquito)); Bombyx spp. (e.g. B. mori (silkworm)); Locusta spp. (e.g. L. migratoria (migratory locust)); Boophilus spp. (e.g. B. microplus (cattle tick)); Acanthoscurria spp. (e.g. A. gomesiana (red-haired chololate bird eater)); Diploptera spp. (e.g. D. punctata (pacific beetle cockroach)); Heliconius spp. (e.g. H. erato (red passion flower butterfly) or H. melpomene (postman butterfly)); Curculio spp. (e.g. C. glandium (acorn weevil)); Plutella spp. (e.g. P. xylostella (diamondback moth)); Amblyomma spp. (e.g. A. variegatum (cattle tick)); Anteraea spp. (e.g. A. yamamai (silkmoth)); and Armigeres spp. (e.g. A. subalbatus).
15. A seed or reproductive or propagation material for a plant of claim 6 , wherein said seed or reproductive or propagation material comprises said polynucleotide or wherein said seed comprises a double stranded ribonucleotide sequence produced from the expression of said polynucleotide.
16. A product produced from the plant of claim 6 , wherein said product comprises said polynucleotide or a double stranded ribonucleotide sequence produced from the expression of said polynucleotide.
17. The product of claim 16 , wherein said product is selected from the group consisting of food, feed, fiber, paper, meal, protein, starch, flour, silage, coffee, tea, and oil.
18. A pesticide comprising the product of claim 16 , said product expressing said nucleic acid sequence.
19. A method for controlling or preventing insect growth comprising providing an insect pest with the product of claim 16 , wherein said product comprises a polynucleotide sequence that inhibits an insect biological activity.
20. The method of claim 19 , wherein said polynucleotide comprises said nucleic acid sequence as defined in claim 1 .
21. A method for producing a plant resistant against a plant pathogenic organism comprising:
transforming a plant cell with a polynucleotide having a nucleic acid sequence as defined in claim 1 , said nucleic acid sequence optionally operably linked to a regulatory sequence,
regenerating a plant from the transformed plant cell; and
growing the transformed plant under conditions suitable for the expression of an RNA molecule from said polynucleotide, said grown transformed plant resistant to said plant pathogenic organism compared to an untransformed plant.
22. A method for improving yield, comprising:
transforming a plant cell with a polynucleotide having a nucleic acid sequence as defined in claim 1 , said nucleic acid sequence optionally operably linked to a regulatory sequence,
regenerating a plant from the transformed plant cell; and
growing the transformed plant under conditions suitable for the expression of an RNA molecule from said polynucleotide, said expression inhibiting feeding by a plant pathogenic organism and loss of yield due to pest infestation.
23. The method according to claim 50 , wherein polynucleotide expression produces an RNA molecule that suppresses a target gene in an insect pest that has ingested a portion of said crop plant, wherein said target gene performs at least one essential function selected from the group consisting of feeding by the pest, viability of the pest, pest cell apoptosis, differentiation and development of the pest or any pest cell, sexual reproduction by the pest, muscle formation, muscle twitching, muscle contraction, juvenile hormone formation and/or reduction, juvenile hormone regulation, ion regulation and transport, maintenance of cell membrane potential, amino acid biosynthesis, amino acid degradation, sperm formation, pheromone synthesis, pheromone sensing, antennae formation, wing formation, leg formation, egg formation, larval maturation, digestive enzyme formation, haemolymph synthesis, haemolymph maintenance, neurotransmission, larval stage transition, pupation, emergence from pupation, cell division, energy metabolism, respiration, cytoskeletal structure synthesis and maintenance, nucleotide metabolism, nitrogen metabolism, water use, water retention, and sensory perception.
24. The method according to claim 50 wherein:
the nucleic acid sequence is chosen from the group comprising:
(i) sequences represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160 to 163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 246, or 2486, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160 to 163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 246, or 2486, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160 to 163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 246, or 2486, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 49 to 158, or the complement thereof, and
the insect is chosen from the group comprising Leptinotarsa spp. (e.g. L. decemlineata (Colorado potato beetle), L. juncta (false potato beetle), and L. texana (Texan false potato beetle)).
25. The method according to claim 50 wherein:
the nucleic acid sequence is chosen from the group comprising:
(i) sequences represented by any of SEQ ID NOs 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 512, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 512, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 512, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 275 to 472, or the complement thereof, and
the insect is chosen from the group comprising Phaedon spp. (e.g. P. cochleariae (mustard leaf beetle)).
26. The method according to claim 50 wherein:
the nucleic acid sequence is chosen from the group comprising:
(i) sequences represented by any of SEQ ID NOs 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591 or 596, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591 or 596, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591 or 596, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 533 to 575, or the complement thereof, and
the insect is chosen from the group comprising Epilachna spp. (e.g. E. varivetis (mexican bean beetle)).
27. The method according to claim 50 wherein:
the nucleic acid sequence is chosen from the group comprising:
(i) sequences represented by any of SEQ ID NOs 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783 or 788, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783 or 788, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783 or 788, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 621 to 767, or the complement thereof, and
the insect is chosen from the group comprising Anthonomus spp. (e.g. A. grandis (boll weevil)).
28. The method according to claim 50 wherein:
the nucleic acid sequence is chosen from the group comprising:
(i) sequences represented by any of SEQ ID NOs 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878 or 883, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878 or 883, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878 or 883, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 813 to 862, or the complement thereof, and
the insect is chosen from the group comprising Tribolium spp. (e.g. T. castaneum (red floor beetle)).
29. The method according to claim 50 wherein:
the nucleic acid sequence is chosen from the group comprising:
(i) sequences represented by any of SEQ ID NOs 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, or 1066 to 1070, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, or 1066 to 1070, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, or 1066 to 1070, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 908 to 1040, or the complement thereof, and
the insect is chosen from the group comprising Myzus spp. (e.g. M. persicae (green peach aphid)).
30. The method according to claim 50 wherein:
the nucleic acid sequence is chosen from the group comprising:
(i) sequences represented by any of SEQ ID NOs 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672 or 1677, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672 or 1677, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672 or 1677, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 1161 to 1571, or the complement thereof, and
the insect is chosen from the group comprising Nilaparvata spp. (e.g. N. lugens (brown planthopper)).
31. The method according to claim 50 wherein:
the nucleic acid sequence is chosen from the group comprising:
(i) sequences represented by any of SEQ ID NOs 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090 or 2095, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090 or 2095, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090 or 2095, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 1730 to 2039, or the complement thereof, and
the insect is chosen from the group comprising Chilo spp. (e.g. C. suppressalis (rice striped stem borer), C. auricilius (gold-fringed stem borer), or C. polychysus (dark-headed stem borer)).
32. The method according to claim 50 wherein:
the nucleic acid sequence is chosen from the group comprising:
(i) sequences represented by any of SEQ ID NOs 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354 or 2359, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354 or 2359, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354 or 2359, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 2120 to 2338, or the complement thereof, and
the insect is chosen from the group comprising Plutella spp. (e.g. P. xylostella (diamondback moth)).
33. The method according to claim 50 wherein:
the nucleic acid sequence is chosen from the group comprising:
(i) sequences represented by any of SEQ ID NOs 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 2384 to 2460, or the complement thereof, and
the insect is chosen from the group comprising Acheta spp. (e.g. A. domesticus (house cricket)).
34. A transgenic plant resistant to an insect pest comprising a polynucleotide comprising a nucleic acid sequence selected from the group comprising:
(i) sequences represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 246, or 2486, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 246, or 2486, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 49 to 158, 159, 160-163, 168, 173, 178, 183, 188, 193, 198, 203, 208, 215, 220, 225, 230, 240 to 246, or 2486, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 49 to 158, or the complement thereof.
35. A transgenic plant resistant to an insect pest comprising a polynucleotide comprising a nucleic acid sequence selected from the group comprising:
(i) sequences represented by any of SEQ ID NOs 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 512, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 512, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 247, 249, 251, 253, 255, 257, 259, 275 to 472, 473, 478, 483, 488, 493, 498, 503, 508 to 512, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 275 to 472, or the complement thereof.
36. A transgenic plant resistant to an insect pest comprising a polynucleotide comprising a nucleic acid sequence selected from the group comprising:
(i) sequences represented by any of SEQ ID NOs 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591 or 596, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591 or 596, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 513, 515, 517, 519, 521, 533 to 575, 576, 581, 586, 591 or 596, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 533 to 575, or the complement thereof.
37. A transgenic plant resistant to an insect pest comprising a polynucleotide comprising a nucleic acid sequence selected from the group comprising:
(i) sequences represented by any of SEQ ID NOs 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783 or 788, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783 or 788, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 601, 603, 605, 607, 609, 621 to 767, 768, 773, 778, 783 or 788, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 621 to 767, or the complement thereof.
38. A transgenic plant resistant to an insect pest comprising a polynucleotide comprising a nucleic acid sequence selected from the group comprising:
(i) sequences represented by any of SEQ ID NOs 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878 or 883, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878 or 883, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 793, 795, 797, 799, 801, 813 to 862, 863, 868, 873, 878 or 883, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 813 to 862, or the complement thereof.
39. A transgenic plant resistant to an insect pest comprising a polynucleotide comprising a nucleic acid sequence selected from the group comprising:
(i) sequences represented by any of SEQ ID NOs 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, or 1066 to 1071, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, or 1066 to 1071, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 888, 890, 892, 894, 896, 908 to 1040, 1041, 1046, 1051, 1056, 1061, or 1066 to 1071, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 908 to 1040, or the complement thereof.
40. A transgenic plant resistant to an insect pest comprising a polynucleotide comprising a nucleic acid sequence selected from the group comprising:
(i) sequences represented by any of SEQ ID NOs 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672 or 1677, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672 or 1677, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 1071, 1073, 1075, 1077, 1079, 1081, 1083, 1085, 1087, 1089, 1091, 1093, 1095, 1097, 1099, 1101, 1103, 1105, 1107, 1109, 1111, 1113, 1161 to 1571, 1572, 1577, 1582, 1587, 1592, 1597, 1602, 1607, 1612, 1617, 1622, 1627, 1632, 1637, 1642, 1647, 1652, 1657, 1662, 1667, 1672 or 1677, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 1161 to 1571, or the complement thereof.
41. A transgenic plant resistant to an insect pest comprising a polynucleotide comprising a nucleic acid sequence selected from the group comprising:
(i) sequences represented by any of SEQ ID NOs 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090 or 2095, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090 or 2095, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 1682, 1684, 1686, 1688, 1690, 1692, 1694, 1696, 1698, 1700, 1702, 1704, 1730 to 2039, 2040, 2045, 2050, 2055, 2060, 2065, 2070, 2075, 2080, 2085, 2090 or 2095, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 1730 to 2039, or the complement thereof.
42. A transgenic plant resistant to an insect pest comprising a polynucleotide comprising a nucleic acid sequence selected from the group comprising:
(i) sequences represented by any of SEQ ID NOs 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354 or 2359, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354 or 2359, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 2100, 2102, 2104, 2106, 2108, 2120 to 2338, 2339, 2344, 2349, 2354 or 2359, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 2120 to 2338, or the complement thereof.
43. A transgenic plant resistant to an insect pest comprising a polynucleotide comprising a nucleic acid sequence selected from the group comprising:
(i) sequences represented by any of SEQ ID NOs 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or the complement thereof,
(ii) sequences which are at least 70%, preferably at least 75%, 80%, 85%, 90%, more preferably at least 95%, 96%, 97%, 98% or 99% identical to a sequence represented by any of SEQ ID NOs 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or the complement thereof, and
(iii) sequences comprising at least 17 contiguous nucleotides of any of the sequences represented by SEQ ID NOs 2364, 2366, 2368, 2370, 2372, 2384 to 2460, 2461, 2466, 2471, 2476 or 2481, or the complement thereof,
or wherein said nucleic acid sequence is an orthologue of a gene comprising at least 17 contiguous nucleotides of any of SEQ ID NOs 2384 to 2460, or the complement thereof.
44. The transgenic plant according to claim 34 further comprising or expressing a pesticidal agent selected from the group consisting of a patatin, a Bacillus thuringiensis insecticidal protein, a Xenorhabdus insecticidal protein, a Photorhabdus insecticidal protein, a Bacillus laterosporous insecticidal protein, and a Bacillus sphearicus insecticidal protein.
45. The transgenic plant of claim 44 wherein said Bacillus thuringiensis insecticidal protein is selected from the group consisting of a Cry1, a Cry3, a TIC851, a CryET170, a Cry22, a binary insecticidal protein CryET33 and CryET34, a binary insecticidal protein CryET80 and CryET76, a binary insecticidal protein TIC100 and TIC101, and a binary insecticidal protein PS149B1.
46-48. (canceled)
49. A pesticide comprising a plant of claim 6 or reproductive or propagation material thereof, said plant or reproductive or propagation material thereof expressing said nucleic acid sequence.
50. A method for controlling or preventing insect growth comprising providing an insect pest with the plant of claim 6 or reproductive or propagation material thereof, wherein said plant reproductive or propagation material thereof comprises a sequence that inhibits an insect biological activity.
51. A method of claim 50 , wherein said polynucleotide comprises said nucleic acid.
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Also Published As
Publication number | Publication date |
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CA2633576A1 (en) | 2007-07-19 |
US9528123B2 (en) | 2016-12-27 |
EP2377939A2 (en) | 2011-10-19 |
WO2007080126A3 (en) | 2008-03-27 |
EP1971687A2 (en) | 2008-09-24 |
EP2348115A3 (en) | 2012-01-18 |
WO2007080126A2 (en) | 2007-07-19 |
JP5474355B2 (en) | 2014-04-16 |
US20140373197A1 (en) | 2014-12-18 |
BRPI0706227A2 (en) | 2009-02-25 |
EP2348115A2 (en) | 2011-07-27 |
BRPI0706227A8 (en) | 2019-01-02 |
EP2377939A3 (en) | 2012-01-18 |
WO2007080126A9 (en) | 2008-08-14 |
JP2009523017A (en) | 2009-06-18 |
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