US20050071087A1 - Systems and methods for detecting biological features - Google Patents

Systems and methods for detecting biological features Download PDF

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Publication number
US20050071087A1
US20050071087A1 US10/954,443 US95444304A US2005071087A1 US 20050071087 A1 US20050071087 A1 US 20050071087A1 US 95444304 A US95444304 A US 95444304A US 2005071087 A1 US2005071087 A1 US 2005071087A1
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model
test
organism
computer
cellular
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Abandoned
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Glenda Anderson
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Vyant Bio Inc
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Priority claimed from US10/861,177 external-priority patent/US8321137B2/en
Priority claimed from US10/861,216 external-priority patent/US20050069863A1/en
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Priority to US10/954,443 priority Critical patent/US20050071087A1/en
Assigned to PATHWORK INFORMATICS, INC. reassignment PATHWORK INFORMATICS, INC. ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: ANDERSON, GLENDA G.
Publication of US20050071087A1 publication Critical patent/US20050071087A1/en
Assigned to PATHWORK DIAGNOSTICS, INC. reassignment PATHWORK DIAGNOSTICS, INC. CERTIFICATE OF OWNERSHIP AND MERGER AND CERTIFICATE OF AMENDMENT OF PREDICANT BIOSCIENCES INC. Assignors: PATHWORK INFORMATICS, INC.
Priority to US13/418,991 priority patent/US8977506B2/en
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Assigned to RESPONSE GENETICS, INC. reassignment RESPONSE GENETICS, INC. ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: PATHWORK DIAGNOSTICS, INC.
Assigned to SWK FUNDING LLC, AS AGENT reassignment SWK FUNDING LLC, AS AGENT SECURITY INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: RESPONSE GENETICS, INC.
Priority to US14/624,453 priority patent/US20150161327A1/en
Assigned to CANCER GENETICS, INC. reassignment CANCER GENETICS, INC. ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: RESPONSE GENETICS, INC.
Assigned to SILICON VALLEY BANK reassignment SILICON VALLEY BANK FIRST AMENDMENT TO INTELLECTUAL PROPERTY SECURITY AGREEMENT Assignors: CANCER GENETICS, INC.
Assigned to CANCER GENETICS, INC. reassignment CANCER GENETICS, INC. ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: RESPONSE GENETICS, INC.
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    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N7/00—Computing arrangements based on specific mathematical models
    • G06N7/01—Probabilistic graphical models, e.g. probabilistic networks
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/10—Gene or protein expression profiling; Expression-ratio estimation or normalisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/30—Microarray design
US10/954,443 2003-09-29 2004-09-29 Systems and methods for detecting biological features Abandoned US20050071087A1 (en)

Priority Applications (3)

Application Number Priority Date Filing Date Title
US10/954,443 US20050071087A1 (en) 2003-09-29 2004-09-29 Systems and methods for detecting biological features
US13/418,991 US8977506B2 (en) 2003-09-29 2012-03-13 Systems and methods for detecting biological features
US14/624,453 US20150161327A1 (en) 2003-09-29 2015-02-17 Systems and methods for detecting biological features

Applications Claiming Priority (6)

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US50738103P 2003-09-29 2003-09-29
US50744503P 2003-09-29 2003-09-29
US10/861,177 US8321137B2 (en) 2003-09-29 2004-06-04 Knowledge-based storage of diagnostic models
US10/861,216 US20050069863A1 (en) 2003-09-29 2004-06-04 Systems and methods for analyzing gene expression data for clinical diagnostics
US57741604P 2004-06-05 2004-06-05
US10/954,443 US20050071087A1 (en) 2003-09-29 2004-09-29 Systems and methods for detecting biological features

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US10/861,216 Continuation-In-Part US20050069863A1 (en) 2003-09-29 2004-06-04 Systems and methods for analyzing gene expression data for clinical diagnostics
US10/861,177 Continuation-In-Part US8321137B2 (en) 2003-09-29 2004-06-04 Knowledge-based storage of diagnostic models

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US13/418,991 Continuation US8977506B2 (en) 2003-09-29 2012-03-13 Systems and methods for detecting biological features

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US20050071087A1 true US20050071087A1 (en) 2005-03-31

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US10/954,443 Abandoned US20050071087A1 (en) 2003-09-29 2004-09-29 Systems and methods for detecting biological features
US13/418,991 Expired - Fee Related US8977506B2 (en) 2003-09-29 2012-03-13 Systems and methods for detecting biological features
US14/624,453 Abandoned US20150161327A1 (en) 2003-09-29 2015-02-17 Systems and methods for detecting biological features

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US14/624,453 Abandoned US20150161327A1 (en) 2003-09-29 2015-02-17 Systems and methods for detecting biological features

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US (3) US20050071087A1 (ja)
EP (2) EP1671121A4 (ja)
JP (2) JP2007507770A (ja)
KR (1) KR20060120063A (ja)
AU (1) AU2004285103A1 (ja)
CA (1) CA2540167A1 (ja)
IL (1) IL174599A0 (ja)
WO (1) WO2005042760A2 (ja)

Cited By (25)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20050069863A1 (en) * 2003-09-29 2005-03-31 Jorge Moraleda Systems and methods for analyzing gene expression data for clinical diagnostics
US20050071143A1 (en) * 2003-09-29 2005-03-31 Quang Tran Knowledge-based storage of diagnostic models
US20050256745A1 (en) * 2004-05-14 2005-11-17 Dalton William S Computer systems and methods for providing health care
US20060252082A1 (en) * 2005-05-04 2006-11-09 University Of South Florida Predicting treatment response in cancer subjects
CN101329348A (zh) * 2007-06-18 2008-12-24 许洋 检测胃癌特征蛋白的优化质谱模型及其制备方法和应用
US20090017012A1 (en) * 2007-06-15 2009-01-15 University Of South Florida Methods of diagnosing and treating cancer
WO2009035946A1 (en) * 2007-09-13 2009-03-19 Chemimage Corporation Distinguishing between invasive ductal carcinoma and invasive lobular carcinoma using raman molecular imaging
WO2009035942A1 (en) * 2007-09-13 2009-03-19 Chemimage Corporation Distinguishing between renal oncocytoma and chromophobe renal cell carcinoma using raman molecular imaging
US20110004412A1 (en) * 2007-11-29 2011-01-06 Elminda Ltd. Clinical applications of neuropsychological pattern analysis and modeling
US20110022548A1 (en) * 2007-02-05 2011-01-27 Goded Shahaf System and method for neural modeling of neurophysiological data
GB2479058A (en) * 2010-03-24 2011-09-28 Nodality Inc Modeling biological events
US20120109678A1 (en) * 2009-05-11 2012-05-03 Koninklijke Philips Electronics N.V. Device and method for comparing molecular signatures
US20130337444A1 (en) * 2012-05-22 2013-12-19 Nanostring Technologies, Inc. NANO46 Genes and Methods to Predict Breast Cancer Outcome
US20150221105A1 (en) * 2012-08-30 2015-08-06 Truevision Systems, Inc. Imaging system and methods displaying a fused multidimensional reconstructed image
US9135221B2 (en) 2006-05-25 2015-09-15 Elminda Ltd. Neuropsychological spatiotemporal pattern recognition
US9285577B2 (en) 2010-09-30 2016-03-15 Olympus Corporation Microscope system and data distribution system
US10117721B2 (en) 2008-10-10 2018-11-06 Truevision Systems, Inc. Real-time surgical reference guides and methods for surgical applications
US10299880B2 (en) 2017-04-24 2019-05-28 Truevision Systems, Inc. Stereoscopic visualization camera and platform
US10398598B2 (en) 2008-04-04 2019-09-03 Truevision Systems, Inc. Apparatus and methods for performing enhanced visually directed procedures under low ambient light conditions
US10917543B2 (en) 2017-04-24 2021-02-09 Alcon Inc. Stereoscopic visualization camera and integrated robotics platform
US11039901B2 (en) 2009-02-20 2021-06-22 Alcon, Inc. Real-time surgical reference indicium apparatus and methods for intraocular lens implantation
US11051884B2 (en) 2008-10-10 2021-07-06 Alcon, Inc. Real-time surgical reference indicium apparatus and methods for surgical applications
US11083537B2 (en) 2017-04-24 2021-08-10 Alcon Inc. Stereoscopic camera with fluorescence visualization
US11527323B2 (en) 2019-05-14 2022-12-13 Tempus Labs, Inc. Systems and methods for multi-label cancer classification
US11735302B2 (en) 2021-06-10 2023-08-22 Alife Health Inc. Machine learning for optimizing ovarian stimulation

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WO2005042760A2 (en) 2003-09-29 2005-05-12 Pathwork Informatics, Inc. Systems and methods for detecting biological features
US8784443B2 (en) 2009-10-20 2014-07-22 Truevision Systems, Inc. Real-time surgical reference indicium apparatus and methods for astigmatism correction
JP6164135B2 (ja) * 2014-03-27 2017-07-19 株式会社豊田自動織機 圧縮機
FR3024546B1 (fr) * 2014-07-29 2018-08-24 Universite De Reims Champagne-Ardenne Procede de detection et de quantification de la fibrose
CN111639203B (zh) * 2020-05-28 2023-07-07 神华包神铁路集团有限责任公司 隧道病害定位方法、装置、计算机设备和存储介质

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Cited By (43)

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US20050069863A1 (en) * 2003-09-29 2005-03-31 Jorge Moraleda Systems and methods for analyzing gene expression data for clinical diagnostics
US20050071143A1 (en) * 2003-09-29 2005-03-31 Quang Tran Knowledge-based storage of diagnostic models
US8321137B2 (en) 2003-09-29 2012-11-27 Pathwork Diagnostics, Inc. Knowledge-based storage of diagnostic models
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US8219417B2 (en) * 2004-05-14 2012-07-10 H. Lee Moffitt Cancer Center And Research Institute, Inc. Front end
US8135595B2 (en) * 2004-05-14 2012-03-13 H. Lee Moffitt Cancer Center And Research Institute, Inc. Computer systems and methods for providing health care
US8131567B2 (en) * 2004-05-14 2012-03-06 H. Lee Moffitt Cancer Center And Research Institute, Inc. Value network
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US20130164747A1 (en) * 2005-05-04 2013-06-27 University Of South Florida Predicting Treatment Response in Cancer Subjects
US20060252082A1 (en) * 2005-05-04 2006-11-09 University Of South Florida Predicting treatment response in cancer subjects
US9135221B2 (en) 2006-05-25 2015-09-15 Elminda Ltd. Neuropsychological spatiotemporal pattern recognition
US9730642B2 (en) 2006-05-25 2017-08-15 Elmina Ltd. Neuropsychological spatiotemporal pattern recognition
US20140214730A9 (en) * 2007-02-05 2014-07-31 Goded Shahaf System and method for neural modeling of neurophysiological data
US20110022548A1 (en) * 2007-02-05 2011-01-27 Goded Shahaf System and method for neural modeling of neurophysiological data
US20090017012A1 (en) * 2007-06-15 2009-01-15 University Of South Florida Methods of diagnosing and treating cancer
CN101329348A (zh) * 2007-06-18 2008-12-24 许洋 检测胃癌特征蛋白的优化质谱模型及其制备方法和应用
WO2009035946A1 (en) * 2007-09-13 2009-03-19 Chemimage Corporation Distinguishing between invasive ductal carcinoma and invasive lobular carcinoma using raman molecular imaging
WO2009035942A1 (en) * 2007-09-13 2009-03-19 Chemimage Corporation Distinguishing between renal oncocytoma and chromophobe renal cell carcinoma using raman molecular imaging
US20110004412A1 (en) * 2007-11-29 2011-01-06 Elminda Ltd. Clinical applications of neuropsychological pattern analysis and modeling
US10398598B2 (en) 2008-04-04 2019-09-03 Truevision Systems, Inc. Apparatus and methods for performing enhanced visually directed procedures under low ambient light conditions
US11051884B2 (en) 2008-10-10 2021-07-06 Alcon, Inc. Real-time surgical reference indicium apparatus and methods for surgical applications
US10117721B2 (en) 2008-10-10 2018-11-06 Truevision Systems, Inc. Real-time surgical reference guides and methods for surgical applications
US11039901B2 (en) 2009-02-20 2021-06-22 Alcon, Inc. Real-time surgical reference indicium apparatus and methods for intraocular lens implantation
US20120109678A1 (en) * 2009-05-11 2012-05-03 Koninklijke Philips Electronics N.V. Device and method for comparing molecular signatures
US8924232B2 (en) * 2009-05-11 2014-12-30 Koninklijke Philips N.V. Device and method for comparing molecular signatures
GB2479058A (en) * 2010-03-24 2011-09-28 Nodality Inc Modeling biological events
US9285577B2 (en) 2010-09-30 2016-03-15 Olympus Corporation Microscope system and data distribution system
US20130337444A1 (en) * 2012-05-22 2013-12-19 Nanostring Technologies, Inc. NANO46 Genes and Methods to Predict Breast Cancer Outcome
US11386992B2 (en) * 2012-08-30 2022-07-12 Alcon Inc. Imaging system and methods displaying a fused multidimensional reconstructed image
US20220301693A1 (en) * 2012-08-30 2022-09-22 Alcon Inc. Imaging system and methods displaying a fused multidimensional reconstructed image
US9552660B2 (en) * 2012-08-30 2017-01-24 Truevision Systems, Inc. Imaging system and methods displaying a fused multidimensional reconstructed image
US10740933B2 (en) * 2012-08-30 2020-08-11 Alcon Inc. Imaging system and methods displaying a fused multidimensional reconstructed image
US11682483B2 (en) * 2012-08-30 2023-06-20 Alcon Inc. Imaging system and methods displaying a fused multidimensional reconstructed image
US20180322666A1 (en) * 2012-08-30 2018-11-08 Truevision Systems, Inc. Imaging system and methods displaying a fused multidimensional reconstructed image
US10019819B2 (en) 2012-08-30 2018-07-10 Truevision Systems, Inc. Imaging system and methods displaying a fused multidimensional reconstructed image
US20150221105A1 (en) * 2012-08-30 2015-08-06 Truevision Systems, Inc. Imaging system and methods displaying a fused multidimensional reconstructed image
US11058513B2 (en) 2017-04-24 2021-07-13 Alcon, Inc. Stereoscopic visualization camera and platform
US10299880B2 (en) 2017-04-24 2019-05-28 Truevision Systems, Inc. Stereoscopic visualization camera and platform
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US8977506B2 (en) 2015-03-10
JP2012065674A (ja) 2012-04-05
EP2469439A2 (en) 2012-06-27
WO2005042760A2 (en) 2005-05-12
EP1671121A4 (en) 2007-12-19
CA2540167A1 (en) 2005-05-12
JP2007507770A (ja) 2007-03-29
AU2004285103A1 (en) 2005-05-12
WO2005042760A3 (en) 2005-09-09
IL174599A0 (en) 2006-08-20
US20150161327A1 (en) 2015-06-11

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