TWI327596B - - Google Patents
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- TWI327596B TWI327596B TW094143462A TW94143462A TWI327596B TW I327596 B TWI327596 B TW I327596B TW 094143462 A TW094143462 A TW 094143462A TW 94143462 A TW94143462 A TW 94143462A TW I327596 B TWI327596 B TW I327596B
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Description
1327596 (1) 九、發明說明 【發明所屬之技術領域】 本發明係關於以腈水解酶基因轉形的紅球菌( Rhodococcus)屬之微生物,並係關於使用上述微生物所 具有的腈水解酶之酵素觸媒作用,而由腈化合物製造醯胺 化合物之方法。1327596 (1) EMBODIMENT OF THE INVENTION [Technical Field] The present invention relates to a microorganism belonging to the genus Rhodococcus transformed with a nitrilase gene, and to an enzyme using a nitrilase possessed by the above microorganism A method of producing a guanamine compound from a nitrile compound by a catalytic action.
【先前技術】 將腈化合物的腈基水合並使其轉變成醯胺基所對應的 醯胺化合物之製造技術中,傳統的銅觸媒之化學方法已被 使用微生物的酵素作爲觸媒之方法所取代且成爲主流。此 種酵素一般稱爲腈水解酶,惟由出初次的報告以來,許多 酵素在各種微生物中被發現。例如有關節桿菌屬( Arthrobacter)屬(Agricultural and Biological Chemistry Vol.44 p. 2 2 5 1 - 2 2 5 2,1 9 8 0 )、農桿菌(Agrobacterium )屬 (特開平 05- 10368 1 )、擬似菌(Acinetobacter )屬(特 開昭61-282089 ) '氣單胞菌(Aeromonas)屬(特開平 05-030983 )、腸內桿菌(Enterobacter)屬(特開平 OS-236975) 、 伊文 氏桿菌 (Erwinia) 屬 ( 特開平 05-161496 )'Xanthobacter屬(特開平05-161495)、克列伯氏桿 菌(Klebsiela )屬(特開平 05-030982 )、棒狀桿菌( Corynebacterium)屬(特開昭54-129190,後來判定爲紅 球菌屬)、綠膿菌(Pseudomonas)屬(特開昭 58-86093 )、檸檬酸桿菌(Citrobacter)屬(特開平05-030984 ) (2) 1327596[Prior Art] In the manufacturing technique of combining a nitrile-based water of a nitrile compound to convert it into a guanamine compound corresponding to a guanamine group, a conventional copper catalyst chemical method has been used as a catalyst method using a microorganism enzyme. Replace and become the mainstream. This enzyme is commonly referred to as a nitrilase, but many enzymes have been found in various microorganisms since the initial report. For example, there are Arthrobacter genus (Agricultural and Biological Chemistry Vol. 44 p. 2 2 5 1 - 2 2 5 2, 1 890), Agrobacterium genus (Japanese Patent Laid-Open No. 05- 10368 1 ), Acinetobacter genus (JP-61-282089) 'Aeromonas genus (Special Kaiping 05-030983), Enterobacter genus (Special Kaiping OS-236975), Escherichia ( Erwinia) Genus (Special Kaiping 05-161496) 'Xanthobacter genus (Special Kaiping 05-161495), Klebsiela genus (Special Kaiping 05-030982), Corynebacterium genus (Special opening 54) -129190, later determined to be Rhodococcus), Pseudomonas (Specially Opened: Sin 58-86093), Citrobacter (Special Edition) (2) 1327596
、放射線菌(Streptomyces)屬(特開平05-236976 )、桿 菌(Bacillus)屬(特開昭 5 1 -86 1 86、及特開平 7-255494 ) '鐮胞菌屬(特開平 01-086889)、紅球菌( Rhodococcus)屬(特開昭 63-137688、特開平 02-227069 、特開 2002-369697、及特開平 2-470 )、根瘤菌( Rhizobium )屬(特開平 05-23 6977 )、假諾卡氏菌( Pseudonocardia)屬(特開平8-56684 )等。這些酵素基於 其胺基酸序列的多樣性使得其理化性質上亦發生多樣化, 從而曾進行過各種目的上之硏究。而在其理化學性質中, 有關對於熱或醯胺化合物及腈化合物等之安定性方面,其 硏究例子,如有關Rhodococcus rhodochrous J1菌株之文 獻(European Journal of Biochemistry Vο 1. 196 p.581-589, 19 9 1. Applied and Microbiology Biotechnology V o 1.4 0 p.1 89- 1 95, 1 993、特開 2004-2 155 1 3 ' 及特開 2004-222538 )、有關嗜熱假諾卡氏菌(Pseudonocardia thermophila) JCM3095 株之文獻(特開平 8- 1 87092、及 Journal of Fermentation and Bioengineering Vo 1. 83 p.474-477,19 9 7 )、有關桿菌(Bacillus )屬 BR449株之文獻(WO 99/55719、及 Applied Biochemistry and Biotechnology Vol.77-79 p.67 1 -679, 1999 )、有關桿菌(BaciUus)屬 RAPc8 株之文獻(Enzyme and Microbial Technology Vol.26 p.368-373,2000 ' 及 Extremophiles V o 1.2 p . 3 4 7 -357,1998 ) '有關 Bacillus palidus Dac521 株之文獻(, genus Streptomyces (Special Kaiping 05-236976), genus Bacillus (Specially Opened 51-186 1 86, and JP-A-7-255494) 'Sputum genus (Special Kaiping 01-086889) Rhodococcus genus (JP-A-63-137688, JP-A 02-227069, JP-A-2002-369697, and JP-A-2-470), Rhizobium genus (Special Kaiping 05-23 6977), Pseudonocardia (Special Kaiping 8-56684) and the like. These enzymes have been diversified in physicochemical properties based on the diversity of their amino acid sequences, and have been studied for various purposes. Among its physicochemical properties, examples of the stability of heat or guanamine compounds and nitrile compounds, such as the literature on Rhodococcus rhodochrous J1 strain (European Journal of Biochemistry Vο 1. 196 p.581- 589, 19 9 1. Applied and Microbiology Biotechnology V o 1.4 0 p.1 89- 1 95, 1 993, special open 2004-2 155 1 3 ' and special open 2004-222538 ), related to Nocardia thermophila (Pseudonocardia thermophila) JCM3095 strain (JP-A-8-87092, and Journal of Fermentation and Bioengineering Vo 1. 83 p. 474-477, 19 9 7 ), literature on Bacillus genus BR449 (WO 99) /55719, and Applied Biochemistry and Biotechnology Vol.77-79 p.67 1 -679, 1999 ), the literature on the RAPc8 strain of the genus BaciUus (Enzyme and Microbial Technology Vol.26 p.368-373, 2000 ' and Extremophiles V o 1.2 p . 3 4 7 -357,1998 ) 'Documents on Bacillus palidus Dac521 strain (
Biochimica et Biophysica Acta Vol.1431 p.249-260, 1999 (3) 1327596 )、有關 SC-J05-1 株之文獻(Journal of IndustrialBiochimica et Biophysica Acta Vol. 1431 p.249-260, 1999 (3) 1327596 ), related to SC-J05-1 strain (Journal of Industrial
Microbiology and Biotechnology vol_20 220-226,1 998 )、 有關 Comamonastestosteroni5-MGAM-4D 株之文獻( W02004/101768 )、有關紅球菌(Rhodococcus pyridinovorans ) MW3 株之文獻(Biotechnology Letters 26: 1379-13 84, 2004 )等 〇Microbiology and Biotechnology vol_20 220-226,1 998 ), literature on Comamonastestosteroni 5-MGAM-4D strain ( W02004/101768 ), literature on Rhodococcus pyridinovorans MW3 strain (Biotechnology Letters 26: 1379-13 84, 2004 ) Wait
另一方面,這些特定的腈水解酶其酵素本身雖然十分 地理想,但在工業製造上,也有很多生產酵素之微生物有 其缺陷,而必須以遺傳工程之方法改變其宿主。其第一階 段,係大量嘗試而進行基因選殖之檢討。例如綠膿菌屬( 特開平3-25 1 1 84 )、紅球菌屬(特開平2- 1 19778、特開平 4-2 1 1 379、特開平 09-00973 ' 特開平 07-099980、及特開 200 1 -069978 )、根瘤菌屬(特開平6-25296)、克氏桿菌 屬(特開平6-30397 1 )、無色桿菌屬(特開平08-266277 )、假諾卡氏菌屬(特開平9-275978)、及桿菌屬(特開 平09-248 188 )等。而在第二步驟,必須在最適合工業上 生產之宿主上使該基因表現,惟許多嘗試皆係於基因操作 系業已確立之大腸菌等上的表現,此時,在培養微生物後 ,就必須進行從菌體內純化酵素及固定化等多餘之步驟。 而如紅球菌屬及棒狀桿菌屬,其細胞壁很堅硬,係即使在 高濃度之醯胺化合物及腈化合物中,亦可維持細胞內酵素 活性的微生物而加以表現,其雖可解決此一問題,但在個 別<的微丰物中,就會伴隨著基因操作系之開發上的困難。 (4) 1327596 【發明內容】 發明所欲解決之課題 在酵素的物理化學性質上,係以具有熱安定性及在基 質的腈化合物或生成物之醯胺化合物爲高濃度下亦保持高 度活性之腈水解酶爲理想,雖已有基於該目的的報告,但 因使用於反應的酵素之實施型態'腈化合物的種類之不同 使得這些絕對値有所變動,而無法發現兼備所有性質之酵On the other hand, although these specific nitrilases are very ideal in their own enzymes, in industrial manufacturing, many microorganisms that produce enzymes have defects, and their hosts must be genetically engineered. In the first stage, a large number of attempts were made to conduct a review of genetic selection. For example, Pseudomonas (Special Kaiping 3-25 1 1 84), Rhodococcus (Special Kaiping 2- 1 19778, Special Kaiping 4-2 1 1 379, Special Kaiping 09-00973 'Special Kaiping 07-099980, and special Open 200 1 -069978 ), Rhizobium (Special Kaiping 6-25296), Klebsiella (Special Kaiping 6-30397 1 ), Achromobacter (Special Kaiping 08-266277), Pseudonocardia (Special Kaiping 9-275978), and Bacillus (Special Kaiping 09-248 188) and the like. In the second step, the gene must be expressed on a host that is most suitable for industrial production, but many attempts are made on the established coliforms of the genetic manipulation system. At this time, it is necessary to carry out the cultivation of the microorganisms. Excessive steps such as purification of enzymes from the bacteria and immobilization. In the case of Rhodococcus and Corynebacterium, the cell wall is very hard, and even in high concentrations of indoleamine compounds and nitrile compounds, microorganisms that maintain intracellular enzyme activity can be expressed, which can solve this problem. However, in the individual <RTI ID=0.0>> (4) 1327596 SUMMARY OF THE INVENTION The problem to be solved by the invention is that the physicochemical properties of the enzyme are also highly active at a high concentration with thermal stability and a high concentration of a nitrile compound or a product of the matrix. The nitrilase is ideal. Although there has been a report based on this purpose, the absolute type of nitrile compound has changed due to the type of the enzyme used in the reaction, and it is impossible to find a yeast with all properties.
素。 再者,工業上以腈化合物製造醯胺化合物時,醯胺化· 合物之製造費用中所佔之該酵素的製造費用係極重要之問 題點,此技藝者皆期望能以更便宜之價格、更簡單之培養 基的培養方法所確立之微生物來進行生產,亦期望能以這 些微生物作爲宿主並製作基因轉形之菌體。 在該酵素之製造費用的課題上,其.不僅必須要能容易 培養’更必須能開發出一種菌體上之該酵素表現量很高的 φ 基因操作系。 進而,在寧主微生物內部所存在之腈水解酶酵素,如 " 在高濃度之醯胺化合物及腈化合物中亦能安定地存在時, 該微生物即可視爲係可將該酵素保持於內部之固定化擔體 。此時,其可在高濃度之基質(腈化合物)中發生反應, 而最終之醯胺化合物的累積濃度亦會升高。甚至,其可省 略取出酵素以及結合於固定化擔體之步驟,並將微生物本 身作爲反應觸媒而使用。 亦即’本發明之目的係由自然界中分離一種對於熱及 -8 - (5) 1327596 高濃度化合物具有高安定性的腈水解酶:提供該酵素之:胺 基酸序列及基'因序列;以及使用含有該基因之重組質體, 而提供一種轉形體,其即使在生產成本上極理想之宿主上 ,亦能使種類稀少之酵素達到其表現量。進一步,本發明 之另一目的,係提供一種將上述轉形體培養•增殖後而使 用該轉形體的該酵素之產生方法,以及提供一種由使用該 轉形體之腈化合物所對應的醯胺化合物之便宜製造方法。Prime. Further, when industrially producing a guanamine compound from a nitrile compound, the production cost of the enzyme in the production cost of the amide group is extremely important, and the skilled person expects to be able to obtain a cheaper price. The microorganisms established by the culture method of the simpler culture medium are produced, and it is also desired to use these microorganisms as a host to produce a gene-transformed microbial cell. In addition to the problem of the cost of manufacturing the enzyme, it is not only necessary to be able to be easily cultivated, but it is also necessary to develop a φ gene operating system having a high expression amount of the enzyme on the cell. Further, when the nitrilase enzyme present in the microorganism of the genus Ning, such as " can be stably present in a high concentration of the guanamine compound and the nitrile compound, the microorganism can be regarded as being capable of maintaining the enzyme inside. Immobilized carrier. At this time, it can react in a high concentration matrix (nitrile compound), and the cumulative concentration of the final guanamine compound also increases. In addition, it is possible to omit the steps of taking out the enzyme and binding it to the immobilized support, and using the microorganism itself as a reaction catalyst. That is, the object of the present invention is to isolate a nitrilase having high stability to heat and a high concentration of -8 - (5) 1327596 compound in nature: to provide the amino acid sequence and the base sequence of the enzyme; And by using a recombinant plastid containing the gene, a transformant is provided which enables a rare species of enzyme to reach its performance even in a host which is highly desirable in production cost. Further, another object of the present invention is to provide a method for producing the enzyme using the transformant after culturing and proliferating the above-mentioned transforming body, and to provide a guanamine compound corresponding to the nitrile compound using the transforming body. Cheap manufacturing method.
解決課題之方法 本發明者們爲解決上述課題,進行詳細硏究之結果, 由埼玉縣之溫泉旁的土壤分離出具有腈水解酶活性之微生 物,Geobacillus thermoglucosidasius。並且,至今未知 Geobacillus屬微生物具有腈水解酶,而顯示其腈水解酶活MEANS FOR SOLVING THE PROBLEMS As a result of the detailed study of the above-mentioned problems, the present inventors have isolated the microorganisms having nitrilase activity, Geobacillus thermoglucosidasius, from the soil next to the hot springs in Saitama Prefecture. Moreover, it has not been known until now that the microorganism of the genus Geobacillus has a nitrilase and shows its nitrilase activity.
性。再者,本微生物的培養一般係使用6 5 °C之溫度,此溫 度係超過傳統上具有腈水解酶之好熱性菌的一般培養溫度 (45°C〜60°C ),且酵素同時具有對於醯胺化合物及腈化 合物之安定性。 此外,又由該微生物純化之腈水解酶酵素,其腈水解 酶活性顯示對於熱及高濃度之腈化合物、及醯胺化合物同 時兼具高安定性。再者,以純化酵素之各亞單位的N末端 胺基酸序列爲準,由該微生物的染色體DNA分離出腈水 解酶基因,並初次解明該胺基酸序列及基因序列之結果, 發現與既有的腈水解酶之相同性非常的低。再者,在推定 出存在於該基因下游的活化蛋白質之基因序列的同時,並 -9 - (6) 1327596Sex. Furthermore, the culture of the microorganism is generally carried out at a temperature of 65 ° C, which is higher than the general culture temperature (45 ° C to 60 ° C) of a thermophilic bacteria having a traditional nitrilase, and the enzyme has The stability of the guanamine compound and the nitrile compound. Further, the nitrilase enzyme purified by the microorganism has a high stability of heat and a high concentration of the nitrile compound and the guanamine compound. Furthermore, based on the N-terminal amino acid sequence of each subunit of the purified enzyme, the nitrilase gene is isolated from the chromosomal DNA of the microorganism, and the results of the amino acid sequence and the gene sequence are first solved, and both are found. Some nitrilases have very low identity. Furthermore, while estimating the gene sequence of the activated protein present downstream of the gene, and -9 - (6) 1327596
藉由其基因之表現,成功地製作出能大量表現該酵素之基 因重組菌株,而完成本發明。再者,爲進一步使本發明之 完.成度更加提高’致力於具有堅硬細胞壁,且可’將微生物 本身作成如酵素之固定化擔體使用的紅球菌屬之微生物; 再進一步,將可在便宜的培養機上培養,並適於工業生產 之微生物的玫瑰色紅球菌Rhodococcus rhodochrous M33 菌株(VKM AC-15 15D )作爲宿主,而成功地製作能將^詨^ 酵素不尋常地大量表現之-基因轉形菌株。另一方面,基於 此一結果,證明了玫瑰色紅球菌Rhodococcus rhodochrous M33菌株係具有可作爲將異種生物之腈水解酶表現之宿主 的普遍價値。 亦即,本發明係提供以下(1 ) ~ ( 9 )之發明者。 (1)—種紅球菌(Rhodococcus)屬之微生物,其特 徵爲以下述(A)或(B)的任一DNA所轉形者, (A)該DNA係含有編碼對應於腈水解酶α亞單位之 序列表的序列號碼1所記載之胺基酸序列,或編碼序列表 的序列號碼1所記載之胺基酸序列中,具有一個或數個胺 基酸發生取代、缺失或加成之胺基酸序列的鹼基序列;以 及含有編碼對應於腈水解酶;8亞單位之序列表的序列號碼 2所記載之胺基酸序列,或編碼序列表的序列號碼2所記 載之胺基酸序列中,具有一個或數個胺基酸發生取代、缺 失或加成之胺基酸序列的鹼基序列;同時’該DNA並係 編碼具有腈水解酶活性之蛋白質者; (Β )該DNA係含有編碼腈水解酶亞單位之鹼基序 -10- (9) 1327596 (6)—種如(1)至(5)中任一者所記載微生物之 製造方法,其特徵包含以下述(A)或(B)的任一 DN A 將紅球菌(Rhodococcus)屬之微生物加以轉形者, (A )該DNA係含有編碼對應於腈水解酶α亞單位之 序列表的序列號碼1所記載之胺基酸序列,或編碼序列表 的序列號碼1所記載之胺基酸序列中,具有一個或數個胺 基酸發生取代、缺失或加成之胺基酸序列的鹼基序列;以 及含有編碼對應於腈水解酶/3亞單位之序列表的序列號碼 2所記載之胺基酸序列,或編碼序列表的序列號碼2所記 載之胺基酸序列中,具有一個或數個胺基酸發生取代、缺 失或加成之胺基酸序列的鹼基序列;同時,該DNA並係 編碼具有腈水解酶活性之蛋白質者;The present invention has been accomplished by successfully producing a genetic recombinant strain capable of expressing the enzyme in a large amount by the expression of its gene. Furthermore, in order to further improve the degree of completion of the present invention, it is directed to a microorganism of the genus Rhodococcus which has a hard cell wall and can be used as an immobilized carrier such as an enzyme. Further, Rhodococcus rhodochrous M33 strain (VKM AC-15 15D), which is cultivated on a cheap culture machine and suitable for industrial production of microorganisms, is successfully used as a host, and it can be produced in an unusually large amount. Gene-transformed strain. On the other hand, based on this result, it was confirmed that the Rhodococcus rhodochrous M33 strain has a general price as a host for expressing a nitrilase of a xenobiotic. That is, the present invention provides the inventors of the following (1) to (9). (1) A microorganism of the genus Rhodococcus characterized by being transformed with any of the following DNAs (A) or (B), (A) the DNA system containing a code corresponding to a nitrilase α The amino acid sequence described in SEQ ID NO: 1 in the sequence listing of the unit, or the amino acid sequence described in SEQ ID NO: 1 in the Sequence Listing, having one or more amines substituted, deleted or added to the amine a base sequence of a base acid sequence; and an amino acid sequence described in SEQ ID NO: 2 encoding a sequence listing corresponding to a nitrilase; 8 subunits, or an amino acid sequence described in SEQ ID NO: 2 of the Sequence Listing a base sequence having an amino acid sequence in which one or several amino acids are substituted, deleted or added; and the DNA encodes a protein having nitrilase activity; (Β) the DNA system contains The method for producing a microorganism according to any one of (1) to (5), which is characterized by the following (A) or Any DN A of (B) is transformed into a microorganism of the genus Rhodococcus (A) the DNA contains an amino acid sequence described in SEQ ID NO: 1 in the sequence listing corresponding to the cytidine hydrolase α subunit, or an amino acid sequence described in SEQ ID NO: 1 in the coding sequence table. a base sequence of an amino acid sequence in which one or several amino acids are substituted, deleted or added; and an amino acid sequence as described in SEQ ID NO: 2 encoding a sequence listing corresponding to a nitrilase/3 subunit Or the nucleotide sequence of the amino acid sequence having one or several amino acid substitutions, deletions or additions in the amino acid sequence described in SEQ ID NO: 2 of the Sequence Listing; at the same time, the DNA coding a protein having nitrilase activity;
(Β)該DNA係含有編碼腈水解酶α亞單位之鹼基序 列所對應序列表的序列號碼3之第695 ~第1312個的鹼基 序列,或在嚴謹條件下對於該鹼基序列進行雜交的鹼基序 列;以及含有編碼腈水解酶Θ亞單位之鹼基序列所對應序 列表的序列號碼3之第1~第681個的鹼基序列,或在嚴謹 條件下對於該鹼基序列進行雜交的鹼基序列;同時,該 DNA並係編碼具有腈水解酶活性之蛋白質者。 (7) —種腈水解酶或含有該腈水解酶的菌體處理物 之製造方法,其特徵爲包含將如(1)至(5)中任一者之 微生物於培養基中加以培養者。 (8) —種腈水解酶或含有該腈水解酶的菌體處理物 ,其係以(7 )之製造方法加以製造。 •13- (10) 1327596 (9) 一種醯胺化合物之製造方法,其特徵爲包含使 (8)之腈水解酶或含有該腈水解酶的菌體處理物作用於 ^ 腈化合物上,並由該腈化合物合成醯胺化合物者。 藉由使用本發明之微生物,可製造出對於熱及高濃度 的腈化合物、醯胺化合物具有高度安定性之腈水解酶,並 藉由利用該腈水解酶,就可以優良效率及便宜價格將腈化 ' 合物變換成相對應之醯胺化合物。 實施發明之最佳型態 以下,茲詳細地說明本發明之實施型態。 首先,說明本發明中使之表現的腈水解酶。本發明中 所謂具有腈水解酶活性,係如乙腈爲乙醯胺、正丙腈爲正 丙醯胺、丙烯腈爲丙烯醯胺,腈化合物加上水分子,而使 其轉變成醯胺化合物之活性者。再者,所生成的化合物以 液相層析法分離後,使用氣相層析法/質譜法(GC/MS )、 φ 紅外線吸收光譜(IR)及核磁共振光譜(NMR )等進行定 性。 • 本發明中測定腈水解酶活性時,例如可於1 ml的〇. 1 重量%的腈化合物溶液(0.05M-磷酸緩衝液,PH7.7)中 ,加入10μ1的腈水解酶溶液,反應溫度由27°C至60°C , 保溫10至60分鐘後,加入0.1ml的IN HC1使反應停止 ,一部份的反應液以液相層析法進行分析,檢定是否存在 醯胺化合物。 本發明中作爲基質的腈化合物,例如有乙腈、正丙腈 -14- (11) 1327596 、正丁腈、異丁腈、正戊腈、正己腈等脂肪酸腈化合物、 2-氯丙腈等含鹵素原子之腈化合物、丙烯腈、巴豆腈、甲 . 基巴豆腈等含不飽和鍵的脂肪族腈化合物、乳腈、苯乙醇 腈等羥基腈化合物、2-苯基甘胺腈等胺基腈化合物、苯甲 . 腈、氰吡啶等芳香族腈化合物、丙二腈、丁二腈、己二腈 等二腈化合物等及三腈化合物。 ' 本發明之腈水解酶,其基質專一性可藉由在上述測定 φ 條件下,測定基質經各種變化後各該基質是否具有腈水解 酶活性而加以判斷。基質專一性若能擴充,可製造的對應 醯胺化合物之種類亦可增加,較理想者爲即使使用少量的 本酵素依舊可以丙烯腈、己二腈、乙腈、異丁腈' 正戊腈 、正丁腈、苯甲腈、己腈爲基質者。 本發明的腈水解酶,其更理想者例如有序列表之序列 號碼1所示的205個胺基酸序列所示的α亞單位,以及序 列表之序列號碼2所示的226個胺基酸序列所示的;8亞單 φ 位所構成者。在該2個亞單位之外亦可含有金屬或其他胜 肽等。而該金屬,則特別以含鐵及鈷爲多。並且,亦可爲 ' 含有該亞單位的任一者之蛋白質。再者,作爲各亞單位的 胺基酸序列,只要能與其他亞單位形成複合體且具有腈水 " 解酶活性即可,上述的序列表之序列號碼1或2所記載的 胺基酸序列中,亦可發生一個或多個胺基酸之取代、缺失 、或插入,並可預知根據宿主之種類而在轉譯後進行修飾 。其中,特別在腈水解酶的α亞單位中,半胱胺酸殘基經 轉譯後,多數被修飾成半胱胺酸亞磺酸或半胱胺酸次磺酸 -15- (13) 1327596 物會阻礙反應,而成爲得到高濃度反應產物時的嚴重問題 ,但該腈水解酶,其即使加入35重量%的丙烯醯胺於活 性測定溶液中,基質的丙烯腈濃度亦有顯著的減少,表示 活性依舊保持者。 具有如上述物理化學性質的腈水解酶,例如可由培養 Geobacillus屬之微生物而取得。而Geobacillus屬微生物 方面,例如有 Geobacillus caldoxylsilyticus、Geobacillus(Β) the DNA contains a base sequence of 695th to 13thth of SEQ ID NO: 3 in the sequence of the sequence corresponding to the base sequence of the nitrilase α subunit, or hybridizes the base sequence under stringent conditions. a base sequence; and a base sequence comprising the first to the 681th nucleotide sequence number 3 of the sequence listing corresponding to the nucleotide sequence encoding the nitrilase Θ subunit, or hybridizing the base sequence under stringent conditions The base sequence; at the same time, the DNA is a protein encoding a nitrilase activity. (7) A method for producing a nitrilase or a bacterium for treating a bacterium comprising the nitrilase, which comprises culturing a microorganism according to any one of (1) to (5) in a culture medium. (8) A nitril hydrolase or a bacterial cell treated product containing the nitrilase, which is produced by the production method of (7). • 13- (10) 1327596 (9) A method for producing a guanamine compound, which comprises subjecting a nitrilase of (8) or a bacterial body treatment containing the nitrilase to a nitrile compound, and The nitrile compound is synthesized by a guanamine compound. By using the microorganism of the present invention, a nitrilase having high stability to heat and a high concentration of a nitrile compound or a guanamine compound can be produced, and by using the nitrilase, the nitrile can be efficiently and inexpensively obtained. The compound is converted into a corresponding guanamine compound. BEST MODE FOR CARRYING OUT THE INVENTION Hereinafter, embodiments of the present invention will be described in detail. First, the nitrilase which is expressed in the present invention will be described. The present invention has a nitrilase activity such as acetonitrile as acetamamine, n-propanenitrile as n-propionamine, acrylonitrile as acrylamide, and a nitrile compound plus water molecules to convert it into a guanamine compound. Active. Further, the resulting compound is separated by liquid chromatography, and then characterized by gas chromatography/mass spectrometry (GC/MS), φ infrared absorption spectroscopy (IR), and nuclear magnetic resonance spectroscopy (NMR). • When measuring the nitrilase activity in the present invention, for example, 1 μl of a nitrile compound solution (0.05 M-phosphate buffer, pH 7.7) may be added to a 10 μl nitrilase solution at a reaction temperature. After incubation at 27 ° C to 60 ° C for 10 to 60 minutes, 0.1 ml of IN HC1 was added to stop the reaction, and a portion of the reaction solution was analyzed by liquid chromatography to determine the presence of a guanamine compound. The nitrile compound as a matrix in the present invention includes, for example, a fatty acid nitrile compound such as acetonitrile, n-propionitrile-14-(11) 1327596, n-butyronitrile, isobutyronitrile, n-valeronitrile or n-hexane, and 2-chloropropionitrile. An aliphatic nitrile compound containing an unsaturated bond such as a nitrile compound of a halogen atom, acrylonitrile, crotononitrile, or crotononitrile, a hydroxynitrile compound such as a lactonitrile or a phenylglycolonitrile, or an aminonitrile such as a 2-phenylglycine nitrile An aromatic nitrile compound such as a compound, benzonitrile, nitrile or cyanopyridine, a dinitrile compound such as malononitrile, succinonitrile or adiponitrile, or a trinitrile compound. The nitrilase of the present invention, whose matrix specificity can be judged by measuring whether the substrate has nitrilase activity after various changes in the substrate under the above-described measurement of φ. If the matrix specificity can be expanded, the type of corresponding guanamine compound can be increased. It is desirable to use acrylonitrile, adiponitrile, acetonitrile, isobutyronitrile, n-valeronitrile, or even a small amount of the enzyme. Nitrile, benzonitrile, hexane nitrile as matrix. The nitrilase of the present invention is more preferably, for example, an α subunit represented by 205 amino acid sequences represented by SEQ ID NO: 1 in the Sequence Listing, and 226 amino acids represented by SEQ ID NO: 2 in the Sequence Listing. As shown in the sequence; 8 sub- φ bits constitute the one. Metal or other peptides may be contained in addition to the two subunits. The metal is particularly rich in iron and cobalt. Also, it may be a protein containing any of the subunits. Further, the amino acid sequence as each subunit may be a complex of other subunits and has a nitrile water "enzymatic activity, and the amino acid described in the above Sequence Listing No. 1 or 2; In the sequence, substitutions, deletions, or insertions of one or more amino acids may also occur, and it is foreseen that modifications are made after translation depending on the type of host. Among them, especially in the α subunit of nitrilase, after translation, most of the cysteine residues are modified into cysteine sulfinic acid or cysteine sulfenic acid-15-(13) 1327596 It will hinder the reaction and become a serious problem when a high concentration of the reaction product is obtained. However, the nitrilase has a significant decrease in the acrylonitrile concentration of the matrix even when 35% by weight of acrylamide is added to the activity measurement solution. The activity remains the same. A nitrilase having a physicochemical property as described above can be obtained, for example, by culturing a microorganism of the genus Geobacillus. And Geobacillus is a microbial aspect, such as Geobacillus caldoxylsilyticus, Geobacillus
kaustophilus 、 Geobacillus lituanicus ' Geobacillus stearothermophilus、Geobacillus subterr aneu s、Kaustophilus , Geobacillus lituanicus ' Geobacillus stearothermophilus, Geobacillus subterr aneu s,
Geobacillus thermocatenulatus、Geobacillus thermodenitrificans、Geobacillus thermoglucosidasius、 Geobacillus thermoleovorans ' Geobacillus toebii ' 及Geobacillus thermocatenulatus, Geobacillus thermodenitrificans, Geobacillus thermoglucosidasius, Geobacillus thermoleovorans ' Geobacillus toebii ' and
Geobacillus uzenensis。此外,本發明並無特別限定須來 自 Geobacillus屬的微生物,亦可含有來自其他微生物之 腈水解酶基因。此種微生物例如有農桿菌(Agrobacterium )屬 '無色桿菌屬(Achromobacter)屬、擬似菌( Acinetobacter )屬、氣單胞菌(Aeromonas )屬、腸內桿 菌(Enterobacter )屬、伊文氏桿菌(Erwinia )屬、 Xanthobacter屬、克列伯氏桿菌(Klebsiela )屬、棒狀桿 菌(Corynebacterium)屬、中國根瘤菌屬(sinorhizobium ) '綠膿菌(Pseudomonas)屬、放射線菌(Streptomyces )屬、Norcardia 屬、桿菌(Bacillus)屬 '球菌( Micrococcus)屬' 紅球菌(Rhodococcus)屬、紅假單細 胞屬(Rhodopseudomonas)屬、根瘤菌(Rhizobium )屬 -17- (14) (14)1327596 、假諾卡氏菌(Pseudonocardia)屬等。具體而言,本發 明可由下述方法進行篩選。首先,將在各種場所所採集的 少量土壤,放入裝有水或生理食鹽水的試管內,經2天至 14天,65 °C的震動培養器中進行震動培養。取出一部份的 培養液,放入含有一般使用於微生物的培養基之主要成分 ,例如甘油、聚腺、酵母菌萃取物等之液體培養基中,於 6 5 °C的培養溫度下,經1天至7天左右的培養。由此所得 之一部份培養液,塗抹於含前述微生物生長用培養基成分 之洋菜平面培養基進行65 °C的再培養後形成菌落,進而分 離出微生物。如此所得之微生物,使用裝有於前述培養基 成分中再加入正戊腈等腈化合物或甲基丙烯醯胺等醯胺化 合物之液體培養基之試管、或錐形瓶Φ,於適當時間、例 如約12小時至7天左右於65 °C培養溫度下進行震動培養 而增殖,依據上述的腈水解酶活性測定方法,選擇出目的 微生物。此種微生物的代表性菌株之定義由16SrRN A及 下述生化學性質得知爲 Geobacillus thermoglucosidasius, 命名爲 Geobacillus thermoglucosidasius Q-6,以寄存號碼 爲FERM P-19351 (寄存日期爲平成15年5月16日)寄 存於獨立行政法人產業技術綜合硏究所,並以FERM BP-08658 依據布達佩斯條約 而移管 (寄存日期 爲平成 16 年 3 月 1 1 日)。Geobacillus thermoglucosidasius Q-6 並以 BCRC 9 10263寄存於台灣之寄存機構。雖對於各種專利、 文獻進行調查,但有關 Geobacillus thermoglucosidasius 的微生物之記載內容中,並未記載其具有腈水解酶活性之 -18- (15) 1327596 事項。由此,可確認Geobacillus thermoglucosidasius Q-6 株爲新穎之微生物。冋時’ Geobacillus thermoglucosidasius Q-6 株的性質係如下所不 (a )型態性質Geobacillus uzenensis. Further, the present invention is not particularly limited to microorganisms belonging to the genus Geobacillus, and may also contain a nitrilase gene derived from other microorganisms. Such microorganisms include, for example, Agrobacterium, Achromobacter, Acinetobacter, Aeromonas, Enterobacter, Erwinia. Genus, Xanthobacter, Klebsiela, Corynebacterium, Sinorhizobium, Pseudomonas, Streptomyces, Norcardia, Bacillus (Bacillus) is a genus of 'Micrococcus' Rhodococcus, Rhodopseudomonas, Rhizobium -17- (14) (14) 1327596, Pseudonocardia (Pseudonocardia) belongs to the genus. Specifically, the present invention can be screened by the following method. First, a small amount of soil collected in various places was placed in a test tube containing water or physiological saline, and shake culture was carried out in a vibrating incubator at 65 °C for 2 to 14 days. Take out a part of the culture solution and put it into a liquid medium containing a main component of a medium generally used for microorganisms, such as glycerin, polyglycan, yeast extract, etc., at a culture temperature of 65 ° C for 1 day. Up to 7 days of culture. One of the thus obtained culture liquids was applied to a canola flat medium containing the medium for the growth of the microorganisms, and then recultured at 65 °C to form colonies, thereby separating the microorganisms. The microorganism thus obtained is a test tube or a conical flask Φ containing a liquid medium containing a nitrile compound such as n-valeronitrile or a guanamine compound such as methacrylamide, or the like, at a suitable time, for example, about 12 The cells were cultured by shaking culture at a culture temperature of 65 ° C for about 7 days, and the target microorganism was selected according to the above-described method for measuring nitrilase activity. The representative strain of this microorganism is defined by 16SrRN A and the following biochemical properties as Geobacillus thermoglucosidasius, named Geobacillus thermoglucosidasius Q-6, with the registration number of FERM P-19351 (the date of registration is May 15, 2005). It is deposited in the Industrial and Technological Research Institute of the Independent Administrative Corporation and is transferred under the jurisdiction of the Budapest Treaty by FERM BP-08658 (the date of registration is March 11th, 2006). Geobacillus thermoglucosidasius Q-6 is deposited with the registry of Taiwan at BCRC 9 10263. Although investigations have been made on various patents and literatures, the contents of the microorganisms of Geobacillus thermoglucosidasius are not described as having nitrilase activity -18-(15) 1327596. Thus, it was confirmed that the Geobacillus thermoglucosidasius Q-6 strain is a novel microorganism. The nature of the Geobacillus thermoglucosidasius Q-6 strain is as follows: (a) the nature of the form
培養條件:營養瓊脂膠(〇\〇1(1;1^13 11(1,1]1〇培養基60°〇 1·細胞形狀及尺寸 形狀:桿菌 尺寸·· 0·8χ2.0 〜3.0;zm 2 ·細胞多形性:一 3. 運動性:+ 鞭毛的著毛狀態:周毛 4. 胞子:— 胞子的部位:端部 (b )培養性質 培養條件:營養瓊脂膠(〇x〇id England UK)培養基6〇。〇 1 ·顏色:奶油色 2.光澤:+ 3 .色素生產:~ 培養條件:營養液體⑴“^^”^以…“培養基⑽艺 1 _表面生長:~ 2·培養基的混濁:+ 培養條件:明膠穿刺培養6 〇 ^ 成長狀態:+ -19- (16) (16)1327596 明膠液化:+Culture conditions: nutrient agar gel (〇\〇1 (1; 1^13 11 (1,1) 1 〇 medium 60 ° 〇 1 · cell shape and size and shape: bacilli size · · · · · · χ 2.0 ~ 3.0; zm 2 · Cell pleomorphism: a 3. Exercise: + Flagellar hairy state: Peripheral hair 4. Cyt:: Cell site: End (b) Culture properties Culture conditions: Nutrition agar gel (〇x〇id England UK) Medium 6〇.〇1 ·Color: Cream 2. Gloss: + 3. Pigment production: ~ Culture conditions: nutrient liquid (1) "^^"^ to..." medium (10) art 1 _ surface growth: ~ 2 · medium Turbidity: + Culture conditions: Gelatin puncture culture 6 〇 ^ Growth state: + -19- (16) (16) 1327596 Gelatin liquefaction: +
培養條件:石蕊牛奶培養基 6(TC 1. 凝固:一 2. 液化:一 (c)生理學性質 1. 革氏染色:不定 2. 硝酸鹽的還原:一 3. 脫氮反應:一 4. MR測試:一 5 . V P測試:一 6 .吲哚的生成:一 7 .硫化氫的生成:一 8. 澱粉的加水分解:- 9. 檸檬酸的利用 Ko s er :—Culture conditions: litmus milk medium 6 (TC 1. solidification: one 2. liquefaction: one (c) physiological properties 1. Gram stain: indefinite 2. nitrate reduction: a 3. denitrification reaction: a 4. MR test: a 5. VP test: a 6. 吲哚 generation: a 7. hydrogen sulfide production: a 8. starch hydrolysis: - 9. citric acid utilization Ko s er: -
Christensen :— 9. 無機氮源的利用 硝酸鹽:一 銨鹽:+ 10. 色素的生成:一 11. 脲酶活性:一 1 2.氧化酶:+ 1 3 .過氧化氫:+ 14.生長的範圍 -20 - (17)1327596Christensen :- 9. Utilization of Inorganic Nitrogen Sources Nitrate: Monoammonium Salt: + 10. Pigment Formation: 11. 11. Urease Activity: -1 2. Oxidase: + 1 3. Hydrogen Peroxide: + 14. Growth Range -20 - (17) 1327596
pH : 5.5 〜8.0pH : 5.5 ~ 8.0
溫度:45°C〜72°C 15.對於氧之反應:兼性厭氣性 1 6 · Ο - F 測試:—/ — (d) 由醣類產生酸:產生氣體 1. L -阿拉伯糖 —/ — 2. D-木糖 + / — 3. D-葡萄糖 + / — 4. D -甘露糖 +/ — 5. D-果糖 + / — 6. D-半乳糖 -/- 7. 麥芽糖 + /_ 8. 薦糖 + / — 9. 乳糖 _ / 一 10. 海藻糖 + / — 11. D-山梨糖醇 -/ — 12. D-麥芽糖醇 + /-1 3 .肌醇 一/ — 14.甘油 —/ - (e) 其他性質 1. /3-半乳糖苷酶活性:一 2. 精胺酸二水解酶活性:一 3. 賴胺酸脫羧基酶活性:- 4. 色胺酸脫胺酶活性:_ -21 - (19) (19)1327596 。本案說明書中,若無特別記載,可採用該領域下習知的 基因重組技術、重組蛋白質之生產技術、及分析法。 編碼本發明的腈水解酶之DN A,可依據本案說明書所 揭不的驗基序列、或胺基酸序列、或視情形由前述純化酵 素所決定之胺基酸序列等序列資訊,由含有本發明腈水解 酶之微生物,例如由 Geobacillus thermoglucosidasius 株取得。依據胺基酸序列所合成之寡核苷酸作爲探針使用 ’以限制酶分解含有腈水解酶之微生物的染色體DNA,將 該DN A片段導入噬菌體或質體中,再由將宿主轉形所得 之資料庫,依據斑點雜交或菌落雜交等,亦可得到編碼本 發明腈水解酶之DN A。再者,不以寡核苷酸作爲探針,而 依據前述純化酵素所決定之兩亞單位的N末端胺基酸序列 資訊等製造出引子,一部份腈水解酶基因依據PCR反應增 幅者作爲探針,亦可進行同樣之過程。所得到之DNA可 插入於例如Puc 118等質體載體而進行選殖,並以二脫氧 終結法(Proceedings of the National Academy of Sciences. USA, 74: 5463-5467, 1977 )等習知方法進行鹼 基序列定義。如此所製作的基因,可藉由使用該基因進行 轉形之大腸桿菌宿主中的表現產物經前述記載的一般活性 測定方法,而確認出係編碼腈水解酶之DNA。 使用編碼具有此種性質的腈水解酶之DNA,將適於工 業生產之微生物進行轉形。較適於生產之工業微生物係以 紅球菌(Rhodococcus)屬之微生物爲理想。在轉形上則 使用以有連接上述DN A之載體者爲特徵之重組載體。 -23- (20) 1327596 本發明的重組載體,係在適合宿主微生物的啓動子區 域之下游上,在適於發揮其功能之情形下與如上述方法所 . 得之DNA的5’末端連結,若有必要可在該下游插入轉錄 終止序列,與適當的表現用載體重組而調製得到。 . 在適當的表現載體方面,只要可於宿主微生物內複製 • 增殖者即可,並無特別限定。載體可使用例如含有pK4系 ' 、PRF30系、PBS305系、pRE-7等,一般在紅球菌所使周 φ 的載體中加以選擇。在表現載體所使用之啓動子,係以可 期待腈酶基因、腈水解酶基因等高表現量之啓動子爲理想 ’惟並不限於此範圍。再者,該宿主只要係基因可插入於 染色體中者即可,並無須在該宿主中具有自律的可複製之 區域。此外,α亞單位基因及yS亞單位基因可由各啓動子 作爲獨立作用子而表現,亦可由共通之啓動子作爲聚作用 子而表現。並且,獨立的作用子,其個別的亞單位基因亦 可在其他載體上。此時,係使用包含α亞單位基因之第一 φ 表現載體及包含/3亞單位基因之第二表現載體的兩種表現 載體,來進行宿主之轉形。進而,在上述重組載體上,如 ' 有必要亦可使腈水解酶活性化所必要之胺基酸序列(特許 , · 第 3408737 號,及 J〇urnal 〇f Bi〇chemtry 1 25:696-704 ( * 1999))的表現DNA共存。具體而言,係使用包含與上 述同樣表現所必要之啓動子與轉錄終結因子等的質體載體 ,可使腈水解酶活性化所相關之蛋白質編碼基因、腈水解 酶之α亞單位基因及/5亞單位基因各自作爲作用子而表現 ,亦可由共通之控制區域作爲作用子而表現。同樣地,個 -24- (22) 1327596 pH即可並無特別限定,一般爲PH3〜9 '較理想爲pH5〜8 、更理想爲pH6〜7下進行。 本發明中,宿主微生物只要係使用紅球菌( Rhodococcus )屬之微生物種類即可,並無特別限制。舉 例而言,有 Rhodococcus rhodochrous ' Rhodococcus ruber 、Rhodococcus erythropolis、Rhodococcus rubropertinctus 等。Temperature: 45 ° C ~ 72 ° C 15. Reaction to oxygen: facultative anaerobic 1 6 · Ο - F Test: - / - (d) Acid production from sugar: gas generation 1. L - arabinose - / — 2. D-Xylose + / — 3. D-Glucose + / — 4. D - Mannose + / — 5. D-Fructose + / — 6. D-galactose-/- 7. Maltose + / _ 8. Recommended sugar + / - 9. Lactose _ / a 10. Trehalose + / - 11. D-sorbitol - / - 12. D-maltitol + /-1 3. Inositol one / - 14. Glycerol - / - (e) Other properties 1. /3-galactosidase activity: a 2. Arginine dihydrolase activity: a 3. Lysine decarboxylase activity: - 4. Tryptophan deamination Enzyme activity: _ -21 - (19) (19) 1327596. In the present specification, unless otherwise specified, genetic recombination techniques, recombinant protein production techniques, and analytical methods well known in the art can be employed. The DN A encoding the nitrilase of the present invention may be based on sequence information such as the nucleotide sequence or the amino acid sequence disclosed in the specification of the present invention or an amino acid sequence determined by the above-mentioned purified enzyme as the case may be. A microorganism in which a nitrilase is invented, for example, is obtained from a strain of Geobacillus thermoglucosidasius. According to the oligonucleotide synthesized by the amino acid sequence as a probe, the chromosomal DNA of the microorganism containing the nitrilase is decomposed by a restriction enzyme, and the DN A fragment is introduced into the phage or plastid, and then the host is transformed. The DN A encoding the nitrilase of the present invention can also be obtained from a database according to dot hybridization or colony hybridization. Furthermore, the oligonucleotide is used as a probe, and the primer is produced based on the N-terminal amino acid sequence information of the two subunits determined by the purified enzyme, and a part of the nitrilase gene is used as an amplification factor of the PCR reaction. The probe can also perform the same process. The resulting DNA can be inserted into a plasmid vector such as Puc 118 for colonization, and the base is subjected to a conventional method such as the deoxygenation method (Proceedings of the National Academy of Sciences. USA, 74: 5463-5467, 1977). Base sequence definition. The gene thus produced can be identified as a DNA encoding a nitrilase by the general activity measurement method described above by performing the expression product in the transformed Escherichia coli host using the gene. Microorganisms suitable for industrial production are transformed using DNA encoding a nitrilase having such properties. Industrial microorganisms more suitable for production are ideal for microorganisms of the genus Rhodococcus. In the case of transformation, a recombinant vector characterized by a vector having the above DN A is used. -23- (20) 1327596 The recombinant vector of the present invention is linked to the 5' end of the DNA obtained by the above method, in the case of being suitable for exerting its function, downstream of a promoter region suitable for the host microorganism. If necessary, a transcription termination sequence can be inserted downstream of this, and can be prepared by recombination with an appropriate expression vector. In terms of an appropriate expression vector, it is not particularly limited as long as it can be replicated in the host microorganism. As the vector, for example, a pK4 system, a PRF30 system, a PBS305 system, a pRE-7 or the like can be used, and it is generally selected from a carrier of the circumference φ of Rhodococcus. The promoter used for the expression vector is preferably a promoter which can expect a high expression amount such as a nitrile gene or a nitrilase gene, but is not limited thereto. Furthermore, the host may be inserted into the chromosome as long as it is a gene, and there is no need to have a self-regulating reproducible region in the host. Further, the α-subunit gene and the yS subunit gene can be expressed by each promoter as an independent effector, or can be expressed by a common promoter as a polymerization. Moreover, independent sub-agents, individual subunit genes can also be used on other vectors. In this case, the host transformation was carried out using two expression vectors comprising the first φ expression vector of the α subunit gene and the second expression vector comprising the /3 subunit gene. Further, on the above recombinant vector, an amino acid sequence necessary for activating the nitrilase can also be used (license, No. 3408737, and J〇urnal 〇f Bi〇chemtry 1 25: 696-704). (*1999)) The performance of DNA coexists. Specifically, a plastid vector containing a promoter and a transcription terminator necessary for the same expression as described above, a protein-coding gene involved in the activation of a nitrilase, an α-subunit gene of a nitrilase, and/or Each of the five subunit genes is expressed as an action, and can also be expressed by a common control region as an action. Similarly, the pH of -24-(22) 1327596 is not particularly limited, but is usually pH 3 to 9 ', preferably pH 5 to 8, more preferably pH 6 to 7. In the present invention, the host microorganism is not particularly limited as long as it is a microorganism species of the genus Rhodococcus. For example, there are Rhodococcus rhodochrous 'Rhodococcus ruber, Rhodococcus erythropolis, Rhodococcus rubropertinctus and the like.
特別理想者,係使用玫瑰色紅球菌 Rhodococcus rhodochrous M33 菌株(VKM Ac-1515D 或 VKPM S-1268 )。該以玫瑰色紅球菌Rhodococcus rhodochrous M33菌 株(VKM AC-1515D或VKPM S-1268 )作爲宿主微生物之 特別理想的理由,係有報告(美國專利第5,827,699號) 指出紅球菌屬一般的特徵係細胞壁較厚,在上述之醯胺化 合物的製造中,可藉由將培養所得之菌體直接與腈化合物 反應,而以該菌所具有之腈水解酶的作用而累積46% (重 量/液量)的丙烯醯胺。進而,相對於諸如玫瑰色紅球菌 Rhodococcus rhodochrous J1菌株等之一般微生物爲充分 生長所需要的含有酵母萃取物、肉萃取物、維他命等高價 營養素之培養基,玫瑰色紅球菌Rhodococcus rhodochrous M33菌株則具有以簡單便宜之合成培養基即可培養的極大 優點。再者,爲求方便,本發明在寄存於Institute ofParticularly desirable is the Rhodococcus rhodochrous M33 strain (VKM Ac-1515D or VKPM S-1268). The particularly desirable reason for using Rhodococcus rhodochrous M33 strain (VKM AC-1515D or VKPM S-1268) as a host microorganism is reported (U.S. Patent No. 5,827,699), indicating that the characteristic characteristics of Rhodococcus are cell wall. In the production of the above-described guanamine compound, the cells obtained by the culture can be directly reacted with the nitrile compound to accumulate 46% (weight/liquid amount) by the action of the nitrilase possessed by the bacterium. Acrylamide. Further, Rhodococcus rhodochrous M33 strain has Rhodococcus rhodochrous M33 strain, which is a medium containing a high-priced nutrient such as yeast extract, meat extract, or vitamin, which is required for sufficient growth, such as Rhodococcus rhodochrous J1 strain. The advantages of simple and cheap synthetic media can be cultivated. Furthermore, for convenience, the present invention is deposited in the Institute of
Biochemistry and Physiology of Microorganisms of The Russian Academy of Science ( IBFM )時(1 993 年 12 月 6 日),係以玫瑰色紅球菌 Rhodococcus rhodochrous M33 -26- (24) (24)1327596 。使用微生物或轉形體等時,可利用菌體本身,作爲菌體 可使用活菌體'或以丙酮或甲苯等施予溶劑處理或冷凍乾 燥等處理’增加其化合物透過性之菌體。依據其情況,亦 可成爲菌體破碎物或菌體萃取物等之酵素含有物。含有該 酵素的菌體處理物之作成方法,例如將首先分離培養物的 固體及液體’所得之濕菌體因應需要可懸浮於磷酸緩衝液 或三鹽酸緩衝液等緩衝液中,其次使用超音波處理、高壓 破碎處理或使用玻璃珠子的粉碎處理,或適當組合溶菌酶 或蛋白酶等細胞壁溶解酵素進行處理等菌體破碎處理,及 菌體內萃取出該酵素,而得到粗製的含腈水解酶之液體。 將該粗製的酵素含有液,因應必要,藉由習知的蛋白質' 酵素等分離、純化方法,可再進一步地純化。例如,於粗 製的酵素含有液中,加入丙酮、乙醇等有機溶劑使其分離 沈澱、或加入硫胺使其進行鹽析,再由水溶液中沈澱分離 出含有腈水解酶之部分的回收方法。再者,可使用陰離子 交換、陽離子交換、膠體過濾、抗體或螯合劑之親和層析 法等適當組合下進行純化。當然酵素或菌體、含有酵素的 菌體處理物等,可由習知方法塡充於管柱中或固體於載體 上,特別在菌體之情形下,可包埋於聚丙烯醯胺膠體等高 分子中β將菌體或菌體處理物懸浮於水或磷酸緩衝液等之 緩衝液等水性水溶液中,於此加入腈化合物而進行反應。 所使用的菌體或菌體處理物之濃度爲0.01重量%〜20重 量%,較理想爲〇·1重量%〜10重量%。反應溫度的上限 較理想爲90°C,更理想爲85°C,最理想爲70°C,反應溫 -28- (25) (25)1327596 度的下限例如爲1。(:,較理想爲4 °C,更理想爲10 °C,反 應pH例如爲5〜〗〇,較理想爲6〜8,反應時間例如有1 分鐘〜72小時。然後,藉由腈化合物的徐徐滴入,可將醯 胺化合物生成累積至高濃度。由反應液回收醯胺化合物的 方法,例如有過濾或離心分離菌體或菌體處理物等後取出 ’再以晶析等方法回收》Biochemistry and Physiology of Microorganisms of The Russian Academy of Science (IBFM) (December 6, 1993), Rhodococcus rhodochrous M33 -26- (24) (24) 1327596. When a microorganism or a transformant or the like is used, the cells themselves can be used, and the cells can be treated with a living cell body or a solvent such as acetone or toluene, or freeze-dried to increase the permeability of the compound. Depending on the situation, it can also be an enzyme-containing substance such as a bacterial cell or a bacterial extract. The method for producing a bacterial cell-containing material containing the enzyme, for example, the solid and liquid obtained by first separating the culture, the obtained wet cells can be suspended in a buffer solution such as a phosphate buffer or a trihydrochloric acid buffer, and then ultrasonic waves are used. Treatment, high-pressure crushing treatment or pulverization treatment using glass beads, or appropriate combination of cell wall lysozyme such as lysozyme or protease for cell disruption treatment, and extraction of the enzyme from the bacteria to obtain a crude liquid containing nitrilase . The crude enzyme-containing solution can be further purified by a separation or purification method of a conventional protein 'enzyme, if necessary. For example, in a crude enzyme-containing solution, an organic solvent such as acetone or ethanol is added to separate and precipitate, or thiamine is added thereto for salting out, and a portion containing a nitrilase is separated by precipitation in an aqueous solution. Further, purification can be carried out by an appropriate combination of anion exchange, cation exchange, colloidal filtration, affinity chromatography using an antibody or a chelating agent, or the like. Of course, the enzyme or the bacteria, the bacterial body treatment containing the enzyme, etc., can be filled in the column or solid on the carrier by a conventional method, especially in the case of the bacteria, can be embedded in the colloidal phase of the polypropylene guanamine. In the molecule, β is suspended in an aqueous solution such as a buffer solution such as water or a phosphate buffer solution, and a nitrile compound is added thereto to carry out a reaction. The concentration of the bacterial or bacterial cell treated material used is 0.01% by weight to 20% by weight, preferably 1:1% by weight to 10% by weight. The upper limit of the reaction temperature is preferably 90 ° C, more preferably 85 ° C, most preferably 70 ° C, and the lower limit of the reaction temperature -28 - (25) (25) 1327596 degrees is, for example, 1. (:, preferably 4 ° C, more desirably 10 ° C, the reaction pH is, for example, 5 to 〇, preferably 6 to 8, and the reaction time is, for example, 1 minute to 72 hours. Then, by a nitrile compound The guanamine compound can be accumulated to a high concentration by dripping in. The method for recovering the guanamine compound from the reaction solution, for example, after filtration or centrifugation of the bacterial cell or the bacterial cell treatment, is taken out and then recovered by crystallization or the like.
實施例 以下舉出實施例對本發明作更詳細的說明,但這些實 施例並未能限定本發明的範圍。 實施例1 :菌體分離 於埼玉縣溫泉旁所採樣的少量土壤(約lg),放入裝 有5 ml生理食鹽水之試管內,經3天,65 °c的震盪培養機 內震盪培養。取出一部份的該培養液(〇.5ml),加入1.0 重量%的葡萄糖、0.5重量%的聚蛋白腺、0.3重量%的酵 母菌萃取物所成之培養基(pH7.0)中,經2天65t的重 複震盪培養。由此所得之一部份培養基(0.1 mL)塗抹於 含前述培養基成分的洋菜平板培養基上,於65 °C下再培養 2天後形成菌落,分離出微生物。將所分離出的微生物接 種於與上述相同組成培養基中添加0.1重量%正戊腈之液 體培養基後,於65t下培養24小時後得到具有高腈基分 解力的微生物之培養液。將該1ml的培養液中加入9ml的 -29- (26) 1327596 1.1重量%的丙烯腈溶液(0.05M-磷酸緩衝液,ρΗ7·7 ) ’ 於反應溫度爲27。(:下進行反應。1〇分鐘後’加入lml的 IN HC1後反應停止。一部份的反應液以HPLC進行分析, 藉由檢定丙烯醯胺的有無,篩選出具有腈水解酶活性之微 生物。而製得具有能如此將腈化合物轉變成醯胺化合物的 水和活性之微生物得到 Geobacillus thermoglucosidasius Q-6 株。EXAMPLES The present invention is illustrated in more detail by the following examples, but these examples do not limit the scope of the invention. Example 1: Bacterial isolation A small amount of soil (about lg) sampled by a hot spring in Saitama Prefecture was placed in a test tube containing 5 ml of physiological saline, and cultured in a shock culture machine at 65 °C for 3 days. A part of the culture solution (〇. 5 ml) was taken out, and 1.0% by weight of glucose, 0.5% by weight of polyprotein gland, and 0.3% by weight of yeast extract were added to the medium (pH 7.0). Repeated shock culture for 65t. A part of the medium (0.1 mL) thus obtained was applied to a plate medium containing the aforementioned medium components, and cultured at 65 ° C for another 2 days to form colonies, and the microorganisms were isolated. The isolated microorganism was seeded in a liquid medium supplemented with 0.1% by weight of n-valeronitrile in the same composition medium as above, and cultured at 65 t for 24 hours to obtain a culture solution of a microorganism having a high nitrile group decomposing power. To 1 ml of the culture solution, 9 ml of a -29-(26) 1327596 1.1 wt% acrylonitrile solution (0.05 M-phosphate buffer, ρΗ7·7 ) was added at a reaction temperature of 27. The reaction was carried out. After 1 minute, the reaction was stopped after adding 1 ml of IN HC1. A part of the reaction solution was analyzed by HPLC, and the microorganism having nitrilase activity was selected by assaying the presence or absence of acrylamide. A microorganism having water and activity capable of converting a nitrile compound into a guanamine compound in this manner was obtained as a strain of Geobacillus thermoglucosidasius Q-6.
(液體層析法分析條件) 本體:HITACHI D-7000 (日立公司製作) 管柱;Inertsil ODS-3 ( GL 科學公司製作) 長度;200mm(Liquid chromatography analysis conditions) Main body: HITACHI D-7000 (manufactured by Hitachi, Ltd.) Pipe column; Inertsil ODS-3 (manufactured by GL Scientific Co., Ltd.) Length; 200 mm
柱溫度;3 5 °C 流量;1 ml/mi η 樣品注入量;1 0 μ 1Column temperature; 3 5 °C flow rate; 1 ml/mi η sample injection amount; 1 0 μ 1
溶液;O.lwt%磷酸水溶液 實施例 2: Geobacillus thermoglucosidasius Q-6 株菌 體中的腈水解酶活性之測定及其溫度依賴性 將裝有l〇〇ml的含有0.2重量%的甘油、〇 2重量% 的檸檬酸三鈉二水合物、0.1重量%的磷酸二氫鉀、〇1重 量%的磷酸氫二鉀' 0.1重量%的聚蛋白腺、〇1重量%的 酵母菌萃取物、0.1重量%的氯化鈉、〇1重量%的正戊腈 、0.02重量%的硫酸鎂七水合物' 〇 〇〇3重量%的硫酸鐵 -30- (27) 1327596Solution; O.lwt% phosphoric acid aqueous solution Example 2: Geobacillus thermoglucosidasius Q-6 strain Determination of nitrilase activity and its temperature dependence will contain 1% by weight of 0.2% by weight of glycerol, 〇2 % by weight of trisodium citrate dihydrate, 0.1% by weight of potassium dihydrogen phosphate, 1% by weight of dipotassium hydrogen phosphate '0.1% by weight of polyprotein gland, 1% by weight of yeast extract, 0.1% by weight % sodium chloride, 1% by weight of n-valeronitrile, 0.02% by weight of magnesium sulfate heptahydrate '〇〇〇3 wt% of ferric sulfate-30- (27) 1327596
(Π)七水合物、0.0002%的氯化鈷六水合物之經殺菌培 養基(ρΗ7.0)之500ml的三角錐形瓶中,接種另外以相 同培養基培養的 Geobacillus thermoglucosidasius Q-6 株 之培養液 1ml。將此於 65 °C下培養一天,於 200str〇ke/min下轉動震盪培養,得到菌體培養液。將 300ml 的該 Geobacillus thermoglucosidasius Q-6 株菌體培 養液藉由離心分離(l〇〇〇〇xg,15分鐘)收集菌體,以 0.05M磷酸緩衝液(pH7.5 )洗淨後,懸浮於50ml的相同 緩衝液中。對於如此調製出的菌體懸浮液,以表1所揭示 之反應溫度,測定出腈化合物轉變成醢胺化合物之水合活 性。酵素活性的單位(unit )定義爲,1分鐘內將ίμιηοΐ 之丙烯腈基轉換成丙烯醯胺之活性作爲1單位(以下稱爲 U),於27°C中每單位濕菌體的腈水解酶活性(U/mg )爲 9.37U/mg。且於10°C下調製出5U/ml之含0.5重量%的丙 烯腈之菌體懸浮液,使用該菌體懸浮液,於30°C ' 40°C、 50°C、60°C、70°C的條件下求得相同的腈水解酶活性,如 表1所示。其結果,使用菌體反應時的最適溫度爲6(TC左 右,顯示高溫區域下之特高活性。 -31 - (28)1327596 表1 反應溫度(°c ) 腈水解酶活性(U/ml) 10 5.0 30 19.2 40 39.4 50 49.2 60 50.6 70 42.4(Π) a 500 ml triangular conical flask of a bactericidal medium (ρΗ7.0) of heptahydrate and 0.0002% cobalt chloride hexahydrate, inoculated with a culture solution of Geobacillus thermoglucosidasius Q-6 strain cultured in the same medium. 1ml. The cells were cultured at 65 ° C for one day, and shake-cultured at 200 str 〇 ke / min to obtain a bacterial culture solution. 300 ml of the culture solution of the Geobacillus thermoglucosidasius Q-6 strain was collected by centrifugation (10 μg, 15 minutes), and the cells were washed with 0.05 M phosphate buffer (pH 7.5) and suspended. 50 ml of the same buffer. With respect to the thus prepared bacterial cell suspension, the hydration activity of the nitrile compound into a guanamine compound was measured at the reaction temperature disclosed in Table 1. The unit of enzyme activity is defined as the activity of converting the acrylonitrile group of ίμιηοΐ into acrylamide in 1 minute as 1 unit (hereinafter referred to as U), and the nitrilase per unit wet cell at 27 ° C The activity (U/mg) was 9.37 U/mg. And 5 U/ml of a bacterial suspension containing 0.5% by weight of acrylonitrile was prepared at 10 ° C, and the bacterial suspension was used at 30 ° C '40 ° C, 50 ° C, 60 ° C, 70 The same nitrilase activity was determined under the conditions of °C, as shown in Table 1. As a result, the optimum temperature at the time of using the cell reaction was 6 (TC or so, and showed an extremely high activity in a high temperature region. -31 - (28) 1327596 Table 1 Reaction temperature (°c) Nitrilase activity (U/ml) 10 5.0 30 19.2 40 39.4 50 49.2 60 50.6 70 42.4
實施例 3 : Geobacillus thermoglucosidasius Q-6 株的 菌體中腈水解酶之熱安定性 對於 Geobacillus thermoglucosidasius Q-6 株的菌體 中腈水解酶活性之熱安定性進行調查,將實施例2的培養 法所得之菌體懸浮於蒸餾水終至l〇U/ml,進行30分鐘的 所定溫度保溫處理,測定其殘存活性。於〇.5ml的1重量 %丙烯腈溶液(0.05M磷酸鉀緩衝液,pH7.5 )中加入 0.5ml的經保溫處理後之菌體液,於27°C攪拌下開始反應 。經5分鐘後,加入100 μί的1當量鹽酸使反應停止。算 出相對於保存處理前的活性之保存處理後的活性,以保存 處理前的活性做爲基準(1〇〇)所得之換算値如表2所示 。由此結果得知,Geobacillus thermoglucosidasius Q-6 株 的菌體中之腈水解酶活性於高溫下亦可保持安定,且於70 t的高溫下亦可保持80%以上的活性,於80°C的高溫下 還可保持30%以上的活性》 -32- (29)1327596 表2 處理溫度(t) 活性(U/ml ) 殘存活性(%) 30 5 100 40 4.8 96 50 4.5 90 60 4.4 88 70 4.2 84 80 1.6 32Example 3: Thermal stability of nitrilase in cells of Geobacillus thermoglucosidasius Q-6 strain The thermal stability of nitrilase activity in the cells of Geobacillus thermoglucosidasius Q-6 strain was investigated, and the culture method of Example 2 was examined. The obtained cells were suspended in distilled water to a temperature of 1 〇U/ml, and subjected to a predetermined temperature incubation for 30 minutes to measure the residual viability. Into 5 ml of a 1 wt% acrylonitrile solution (0.05 M potassium phosphate buffer, pH 7.5), 0.5 ml of the sterilized bacterial body solution was added, and the reaction was started at 27 ° C with stirring. After 5 minutes, 100 μL of 1N hydrochloric acid was added to stop the reaction. The activity after the preservation treatment with respect to the activity before the preservation treatment was calculated, and the conversion obtained based on the activity before storage treatment (1〇〇) was as shown in Table 2. From this result, it was found that the nitrilase activity in the cells of the Geobacillus thermoglucosidasius Q-6 strain can be maintained at a high temperature, and can maintain an activity of 80% or more at a high temperature of 70 t at 80 ° C. It can maintain more than 30% activity at high temperature. -32- (29)1327596 Table 2 Treatment temperature (t) Activity (U/ml) Residual activity (%) 30 5 100 40 4.8 96 50 4.5 90 60 4.4 88 70 4.2 84 80 1.6 32
實施例4:對於各種腈化合物之反應 對於下述表3所記載的各種腈化合物轉變爲所對應的 醯胺化合物之腈水解酶活性作調查。在9ml的1.1%腈溶 液(0.05M磷酸鉀緩衝液,ρΗ7·5)中加入1ml的具體懸 浮液,於反應溫度30 °C下開始反應。10分鐘後,加入 lml的IN HC1使反應停止。其結果顯示所有皆具有腈水 解酶活性。 表3 提供測試的腈化合物 己二腈 正丁腈 乙腈 己腈 異丙腈 苯甲腈 正戊腈 -33- (30) 1327596 實施例5以下所記載的來自Geobacillus thermoglucosidasius Q-6 株之腈水解酶 α 亞單位(ORF2) 、冷亞單位(0RF1)及腈水解酶活化因子(ORF3)之胺 _ 基酸序列及鹼基序列,其在本發明的解明流程槪要係如下 所記載。 培養 Geobacillus thermoglucosidasius Q-6 株所得之 φ 菌體經絞碎後,以硫酸銨進行沈澱,再以陰離子交換柱層 析法、DEAE柱、羥基磷灰石柱,進行膠體過濾層析法之 透析,而純化腈水解酶。 定義經純化的腈水解酶之α亞單位及yS亞單位之N末 端約3 0殘基之胺基酸序列,考慮到使用基於該菌屬的胺 基酸密碼子,而製造出基因增幅用寡核苷酸退化引子,由 該菌體所萃取的染色體DNA作爲鑄型進行退化PCR,取 得增幅DNA片段。被增幅的DNA片段經選殖後,定義該 % 插入片段之鹼基序列。藉由該鹼基序列所推測的胺基酸序 * 列、與 Geobacillus thermoglucosidasius Q-6 株所純化出 * 的腈水解酶α亞單位及亞單位之N末端胺基酸序列作比 « 較,確認經選殖的序列爲編碼腈水解酶者。 其結果,確認在 Geobacillus thermoglucosidasius Q-6 株中,由5’末端側上游之腈水解酶基因以;9亞單位、α亞 單位的順序鄰接。 由習知的各種腈水解酶α亞單位之下游基因的相同性 較高序列,製造出基因增幅用寡核苷酸退化引子,由該菌 -34- (31) (31)1327596 體所萃取的染色體DNA作爲鑄型進行PCR退化,而取得 增幅DNA片段。所得之該菌體的α亞單位部分之增幅 DNA片段經選殖而定義其鹼基序列。 以上取得的 Geobacillus thermoglucosidasius Q-6 株 之腈水解酶α亞單位及々亞單位導入適當的表現載體中。 使用構築之表現質體,使適當的宿主菌株進行轉形》作爲 宿主的例子例如有紅球菌(Rhodococcus )屬、棒狀桿菌 (Corynebacterium)屬、大腸桿菌等。其中並以不具有醯 胺酶的宿主爲理想。且由培養所得轉形體所得之菌體與丙 烯腈於水性媒體中藉由接觸而生成丙烯醯胺,比較其生成 效率及腈水解酶活性。 其次+,如上述所得之DNA片段作爲探針,進行菌落 雜交,選殖含有 Geobacillus thermoglucosidasius Q-6 株 的腈水解酶α亞單位及亞單位之下游基因的周邊基因。 使下游基因與腈水解酶α亞單位及沒亞單位同時表現 ,與腈水解酶活性作比較。其結果,發現下游基因係與使 腈水解酶活性顯著提高之相關基因。 實施例5:純化酵素之物理化學性質 [步驟1]腈水解酶酵素之純化 培養 Geobacillus thermoglucosidasius Q-6 株,提供 於各種管柱上而純化腈水解酶活性部分。 層析法中腈水解酶活性部分之測定方法如下進行。以 HEPES緩衝液(100mM,pH7.2 )稀釋的各部分之溶離液 -35- (32) 1327596 中添加1重量%的丙烯腈,於27 °C下反應1分鐘。添加 IN HC1於1〇液量%反應液中使反應停止,所生成的丙烯 醯胺濃度藉由上述之HPLC分析法進行測定。Example 4: Reaction to various nitrile compounds The nitrilase activities of the respective guanamine compounds converted to the respective nitrile compounds described in Table 3 below were investigated. 1 ml of a specific suspension was added to 9 ml of a 1.1% nitrile solution (0.05 M potassium phosphate buffer, ρΗ7·5), and the reaction was started at a reaction temperature of 30 °C. After 10 minutes, 1 ml of IN HC1 was added to stop the reaction. The results showed that all had nitrile hydrolase activity. Table 3 provides the tested nitrile compound adiponitrile n-butyronitrile acetonitrile acetonitrile isopropyl nitrile benzonitrile n-valeronitrile-33- (30) 1327596 Example 5 The nitrilase from Geobacillus thermoglucosidasius Q-6 strain described below The amine-based acid sequence and the base sequence of the α subunit (ORF2), the cold subunit (ORF1), and the nitrilase activating factor (ORF3) are described below in the flow of the present invention. The φ cells obtained from the cultivation of Geobacillus thermoglucosidasius Q-6 strain were pulverized, precipitated with ammonium sulfate, and subjected to anion exchange column chromatography, DEAE column, hydroxyapatite column for dialysis by colloidal filtration chromatography. The nitrilase is purified. Defining an amino acid sequence of the α subunit of the purified nitrilase and about 30 residues at the N-terminus of the yS subunit, and using the amino acid codon based on the genus of the genus to produce a gene amplification oligo The nucleotide degrading primer is subjected to degenerate PCR using the chromosomal DNA extracted from the cell as a mold to obtain an amplified DNA fragment. After the amplified DNA fragment is selected, the base sequence of the % insert is defined. The amino acid sequence* predicted by the base sequence is compared with the N-terminal amino acid sequence of the nitrilase α subunit and the subunit purified by the Geobacillus thermoglucosidasius Q-6 strain. The sequence that was selected was the one encoding the nitrilase. As a result, it was confirmed that in the Geobacillus thermoglucosidasius Q-6 strain, the nitrilase gene upstream of the 5'-end side was adjacent to each other in the order of 9 subunits and α subunits. An oligonucleotide-degrading primer for gene amplification is produced by a well-identified sequence of a downstream gene of various nitrilase α subunits, which is extracted by the strain -34-(31) (31)1327596 The chromosomal DNA is subjected to PCR degradation as a mold to obtain an amplified DNA fragment. The resulting increase in the alpha subunit portion of the cell is determined by colonization to define its base sequence. The nitrilase α subunit and the quinone subunit of the Geobacillus thermoglucosidasius Q-6 strain obtained above were introduced into an appropriate expression vector. Examples of the use of the constructed plastids to transform the appropriate host strain into a host include, for example, the genus Rhodococcus, the genus Corynebacterium, and Escherichia coli. Among them, a host having no guanaminease is preferred. Further, the cells obtained by culturing the obtained transformant were contacted with acrylonitrile in an aqueous medium to form acrylamide, and the production efficiency and nitrilase activity were compared. Next, +, as the probe, the DNA fragment obtained as described above was subjected to colony hybridization to select a peripheral gene containing the nitrilase α subunit of Geobacillus thermoglucosidasius Q-6 strain and the downstream gene of the subunit. The downstream gene was expressed simultaneously with the nitrilase α subunit and the subunit, and compared with the nitrilase activity. As a result, a downstream gene line and a gene related to a significant increase in nitrilase activity were found. Example 5: Physical and chemical properties of purified enzyme [Step 1] Purification of nitrilase enzyme The Geobacillus thermoglucosidasius Q-6 strain was cultured and supplied to various columns to purify the nitrilase active fraction. The method for measuring the active portion of the nitrilase in the chromatography is carried out as follows. 1 part by weight of acrylonitrile was added to each fraction of the solution-35-(32) 1327596 diluted with HEPES buffer (100 mM, pH 7.2), and reacted at 27 ° C for 1 minute. The reaction was stopped by adding IN HC1 to a 1% liquid amount % reaction solution, and the resulting acrylamide concentration was measured by the above HPLC analysis method.
爲純化來自 Geobacillus thermoglucosidasius Q - 6 株 的腈水解酶酵素,首先於含有0.1重量%的正戊腈之V/F 培養基(0.2重量%之甘油、0.2重量%的檸檬酸三鈉二水 合物、0.1重量%的磷酸二氫鉀、0.1重量%的磷酸氫二鉀 、0.1重量%的聚蛋白腺、0.1重量%的酵母菌萃取物、 0.1重量%的氯化鈉、0.1重量%的正戊腈、0.02重量%的 硫酸鎂七水合物、0.003重量%的硫酸鐵(II)七水合物 、0.0002重量%的氯化鈷六水合物)植菌 Geobacillus thermoglucosidasius Q-6 株,經 65°C 下培養 24 小時。培 養係使用96孔2ml的深底培養皿(COSTAR公司)。培 養終了後,經8000g,10分鐘之離心分離收集菌體,將3g 的所得之濕菌體再懸浮於20ml之HEPES緩衝液(100mM ’ pH7.2)中。冷卻菌體後使用超音波破碎機進行破碎後 ,菌體破碎液中加入硫酸銨(30%飽和濃度)於4°C下緩 和攪拌30分鐘,進行20000g,10分鐘的離心分離,得到 澄清液。離心澄清液中加入硫酸銨(70%飽和濃度)於4 °C下緩和攪拌30分鐘後,進行2000〇g,10分鐘的離心分 離後得到之沈澱物於 9ml的 HEPES緩衝液(100mM, ρΗ7·2)進行再溶解,對於1L的同液於4°C下進行24小 時的透析,提供於陰離子交換層析法(Amersham生化科 學公司;HiTrap DEAE FF (管柱體積 5mLx5根))。延 -36- (33) 1327596 展液使用HEPES緩衝液(100mM,pH7.2),將氯化鉀濃 度由0.0M至0.5M成直線增加而溶離,得到含腈水解酶之 部分。將該部分提供於磷灰石柱層析法(BIO-RAD公司製 ;CHT2-I (柱體積爲2mL ) ) 。〇.〇1Μ磷酸鉀水溶液(To purify the nitrilase enzyme from Geobacillus thermoglucosidasius Q-6 strain, first in V/F medium containing 0.1% by weight of n-valeronitrile (0.2% by weight of glycerol, 0.2% by weight of trisodium citrate dihydrate, 0.1) % by weight of potassium dihydrogen phosphate, 0.1% by weight of dipotassium hydrogen phosphate, 0.1% by weight of polyprotein gland, 0.1% by weight of yeast extract, 0.1% by weight of sodium chloride, 0.1% by weight of n-valeronitrile, 0.02% by weight of magnesium sulfate heptahydrate, 0.003% by weight of iron (II) sulfate heptahydrate, 0.0002% by weight of cobalt chloride hexahydrate, and Geobacillus thermoglucosidasius Q-6 strain, cultured at 65 ° C 24 hour. The culture system used a 96-well 2 ml deep-bottomed Petri dish (COSTAR). After the completion of the culture, the cells were collected by centrifugation at 8000 g for 10 minutes, and 3 g of the obtained wet cells were resuspended in 20 ml of HEPES buffer (100 mM 'pH 7.2). After the cells were cooled and crushed using an ultrasonic breaker, ammonium sulfate (30% saturated concentration) was added to the cell disrupted solution, and the mixture was gently stirred at 4 ° C for 30 minutes, and centrifuged at 20,000 g for 10 minutes to obtain a clear liquid. Add the ammonium sulfate (70% saturated concentration) to the centrifugation solution and gently stir at 4 ° C for 30 minutes, then carry out 2000 〇g, and centrifuge for 10 minutes to obtain a precipitate in 9 ml of HEPES buffer (100 mM, ρΗ7· 2) Re-dissolution was carried out, and 1 L of the same solution was subjected to dialysis at 4 ° C for 24 hours, and provided by anion exchange chromatography (Amersham Biochemical Science Co.; HiTrap DEAE FF (column volume 5 mL x 5 roots)). Extension -36- (33) 1327596 The developing solution was flooded with HEPES buffer (100 mM, pH 7.2) and the concentration of potassium chloride was linearly increased from 0.0 M to 0.5 M to obtain a nitrilase-containing portion. This fraction was supplied to an apatite column chromatography (manufactured by BIO-RAD Co., Ltd.; CHT2-I (column volume: 2 mL)). 〇.〇1Μ potassium phosphate aqueous solution (
pH7.2)作爲延展液,將磷酸鉀濃度由0.01M至0.3M成直 線增加而溶離,得到含腈水解酶之部分。該部分以含有 0.15M NaCl的0.05M磷酸鈉水溶液(pH7_2)作爲延展液 提供於膠體過濾層析法(Amersham生化科學公司; Superdex 200 HR 10/30),取得腈水解酶活性部分。使用 如此所得之膠體過濾層析法的腈水解酶活性部分進行以下 的實施例。 [步驟2]純化之腈水解酶的反應溫度依賴性 對於來自 Geobacillus thermoglucosidasius Q-6 株的 腈水解酶活性部分溶液(3.2mg/mL,0.05M磷酸緩衝液( ρΗ7·5)),於如表4所示的反應溫度下測定將腈化合物 轉變成醯胺化合物之腈水解酶活性。在lml的0.5重量% 丙烯腈溶液(0.05M磷酸鉀緩衝液,PH7.5 )中加入腈水 解酶活性部分溶液,於各溫度中攪拌下開始反應。2分鐘 後’加入ΙΟΟμί的1N鹽酸後使反應停止。酵素活性單位 (unit)爲,1分鐘內將Ιμπιοί之丙烯腈轉換成丙烯醯胺 之活性定爲1單位(以下記爲U),每酵素重量單位之水 合活性(U/mg )如表4所示。由該結果得知,由 Geobacillus thermoglucosidasius Q-6 株純化的腈水解酶活 -37- (34) 1327596 性部分中,其腈水解酶的活性在60度之高溫前,隨著反 應溫度的上昇而上昇。最適溫度係與使用菌體反應時相同 之60 °C附近,且於7〇度的高溫下亦可顯示相當高的腈水 解酶活性。 表4 反應溫度(°c ) 活性(U / m g ) 20 2 10.4 27 550.7 40 1135.3 50 2228.8 60 2823.3 70 278 1.1pH 7.2) As an extension liquid, the potassium phosphate concentration was linearly increased from 0.01 M to 0.3 M to be dissolved, and a fraction containing a nitril hydrolase was obtained. This fraction was supplied to a colloidal filtration chromatography (Amersham Biochemical Science Co.; Superdex 200 HR 10/30) using a 0.05 M aqueous sodium phosphate solution (pH 7_2) containing 0.15 M NaCl as an extension liquid to obtain a nitrilase active fraction. The following examples were carried out using the nitrilase active portion of the thus obtained colloidal filtration chromatography. [Step 2] Reaction temperature dependence of purified nitrilase for nitrilase active partial solution (3.2 mg/mL, 0.05 M phosphate buffer (ρΗ7·5)) from Geobacillus thermoglucosidasius Q-6 strain, as shown in the table The nitrilase activity of converting the nitrile compound into a guanamine compound was measured at the reaction temperature shown in 4. A solution of the nitrile hydrolase active portion was added to 1 ml of a 0.5 wt% acrylonitrile solution (0.05 M potassium phosphate buffer, pH 7.5), and the reaction was started with stirring at each temperature. After 2 minutes, the reaction was stopped after the addition of ΙΟΟμί of 1N hydrochloric acid. The activity unit of the enzyme is defined as 1 unit (hereinafter referred to as U) for converting acrylonitrile to acrylamide in 1 minute, and the hydration activity (U/mg) per unit weight of the enzyme is as shown in Table 4. Show. From the results, it was found that the activity of the nitrilase in the nitrilase-37-(34) 1327596 fraction purified by Geobacillus thermoglucosidasius Q-6 strain before the high temperature of 60 degrees, as the reaction temperature increased rise. The optimum temperature is about 60 °C in the same manner as when the cells are reacted, and a relatively high nitrile hydrolase activity can be exhibited at a high temperature of 7 degrees. Table 4 Reaction temperature (°c) Activity (U / m g ) 20 2 10.4 27 550.7 40 1135.3 50 2228.8 60 2823.3 70 278 1.1
[步驟3]純化的腈水解酶之熱安定性 對由 Geobacillus thermoglucosidasius Q-6 株純化之 腈水解酶之熱安定性進行調査時,將腈水解酶活性部分溶 液(3_2mg/ml,0.05M 磷酸緩衝液(ρΗ7·5))進行 30°C 下所定溫度之保溫處理並測定其殘存活性。ImL的0.5重 量%丙烯腈溶液(〇.〇5M磷酸鉀緩衝液* pH7.5)中加入 5μ1的保溫處理後的腈水解酶溶液,於27 °C下邊攪拌邊開 始反應。2分鐘後,加入ι〇〇μΐ的IN HC1使其反應停止。 算出相對於保存處理前的活性之保存後的活性(殘存活性 ),保存處理前的活性做爲基準(100)其換算値如表5 -38- (35) 1327596 所示。由其結果得知,由 G e o b a c i 11 u s t h e r m o g 1 u c o s i d a s i u s Q-6株純化的腈水解酶活性部分之水溶液中,其腈水解酶 活性於高溫下亦可保持安定,且於6(TC的高溫下亦可保持 60%以上的活性,而70°C的高溫下亦可保持35%以上的 活性。 表5 處理溫度(°c ) 殘存活性(% ) 20 89.2 27 85.6 40 82.3 50 78.9 60 66.9 70 38.8[Step 3] Thermal stability of purified nitrilase When the thermal stability of the nitrilase purified by Geobacillus thermoglucosidasius Q-6 strain was investigated, the nitrilase active partial solution (3_2 mg/ml, 0.05 M phosphate buffer) was used. The liquid (ρΗ7·5)) was subjected to heat treatment at a temperature of 30 ° C and its residual activity was measured. To the 0.5% by weight acrylonitrile solution (〇.〇5M potassium phosphate buffer * pH 7.5) of ImL, 5 μl of the heat-treated nitrilase solution was added, and the reaction was started while stirring at 27 °C. After 2 minutes, the reaction was stopped by the addition of IN HC1 of ι〇〇μΐ. The activity (residuality) after storage for the activity before the storage treatment was calculated, and the activity before the storage treatment was used as a reference (100), and the conversion was as shown in Table 5-38-(35) 1327596. From the results, it was found that the nitrilase activity of the active portion of the nitrilase active fraction purified by G eobaci 11 usthermog 1 ucosidasius Q-6 strain can be maintained at a high temperature, and is also at a high temperature of 6 (TC). It can maintain more than 60% activity, and can maintain more than 35% activity at 70 ° C. Table 5 Treatment temperature (°c) Residual activity (%) 20 89.2 27 85.6 40 82.3 50 78.9 60 66.9 70 38.8
[步驟4]純化之腈水解酶的丙烯腈濃度依賴性及濃度 耐性 欲對於有關由 Geobacillus thermoglucosidasius Q-6 株純化的腈水解酶,進行對基質的丙烯腈濃度之依賴性與 耐性作調查,將4μ1的腈水解酶活性部分溶液(3.2mg/ml ,0.05M磷酸緩衝液(pH7.5))加入各種重量%的5ml 丙烯腈溶液(0.05M磷酸鉀緩衝液,ρΗ7·5 ),於27°C下 攪拌開始反應。於5分鐘、10分鐘、20分鐘、40分鐘後 分別取出lml,加入ΙΟΟμΙ的IN HC1使其反應停止,所生 -39- (36) 1327596 成的丙烯醯胺濃度以HPLC定量,如表6所示。由該結果 得知,Geobacillus thermoglucosidasius Q-6 株所純化的膳 水解酶活性部分之水溶液中,其腈水解酶酵素活性於高丙 烯腈濃度下亦可保持安定。其於6%的高濃度丙烯腈溶液 中即使反應40分鐘,與較低丙烯腈濃度下比較並無觀察 到活性降低,相反地隨著基質濃度的提高性亦上昇。 表6 反應開始時的丙 烯腈濃度 (重量%) 5分鐘過後的丙 烯醯胺濃度 (重量%) 10分鐘過後的 丙烯醯胺濃度 ί雷量%) 20分鐘過後的 丙烯醯胺濃度 f雷量%) 40分鐘過後的 丙烯醯胺濃度 (重量%) 0.5% 0.018 0.032 0.052 0.087 2.0% 0.023 0.042 0.070 0.107 4.0% 0.026 0.046 0.077 0.137 6.0% 0.030 0.051 0.082 0.169[Step 4] Acrylonitrile concentration dependence and concentration tolerance of purified nitrilase For investigation of dependence on acrylonitrile concentration and tolerance of nitrilase purified by Geobacillus thermoglucosidasius Q-6 strain, 4μ1 nitrilase active partial solution (3.2mg/ml, 0.05M phosphate buffer (pH7.5)) was added to various weight% 5ml acrylonitrile solution (0.05M potassium phosphate buffer, ρΗ7·5 ) at 27° The reaction was started by stirring at C. After 5 minutes, 10 minutes, 20 minutes, and 40 minutes, 1 ml was taken out, and the reaction was stopped by adding HCμΙ of IN HC1. The concentration of acrylamide was -33- (36) 1327596, which was quantified by HPLC, as shown in Table 6. Show. From the results, it was found that the nitrilase activity of the aqueous solution of the active hydrolyzase of the purified protein of Geobacillus thermoglucosidasius Q-6 was stable at a high acrylonitrile concentration. Even in the 6% high concentration acrylonitrile solution, even if it was reacted for 40 minutes, no decrease in activity was observed as compared with the lower acrylonitrile concentration, and conversely, as the matrix concentration was increased. Table 6 Acrylonitrile concentration at the start of the reaction (% by weight) The concentration of acrylamide after 5 minutes (% by weight) The concentration of acrylamide after 10 minutes ί 量 %) The concentration of acrylamide after 20 minutes f ) Acrylamide concentration after 40 minutes (% by weight) 0.5% 0.018 0.032 0.052 0.087 2.0% 0.023 0.042 0.070 0.107 4.0% 0.026 0.046 0.077 0.137 6.0% 0.030 0.051 0.082 0.169
[步驟 5]由 Geobacillus thermoglucosidasius Q-6 株 純化之腈水解酶的丙烯醯胺濃度耐性 欲對於有關由 Geobacillus thermoglucosidasius Q-6 株純化的腈水解酶,進行對生成物之丙烯醯胺所產生的阻 礙作調查,將1〇μ1的腈水解酶活性部分溶液(3.2mg/ml ,0.05 Μ磷酸緩衝液(PH7.5))加入lml含有0.5重量% 的丙烯腈與35重量%的丙烯醯胺溶液(0.05M磷酸鉀緩 衝液,ρΗ7·5),於27°C下攪拌反應10分鐘,反應後的液 體中的丙烯醯胺濃度以HPLC定量時,所有的丙烯腈皆轉 -40- (37) 1327596 換成丙烯醯胺。由該結果得知’ Geobacillus thermoglucosidasius Q-6株所純化的腈水解酶活性部分中 ,其水溶液中的腈水解酶酵素活性於35%高濃度的丙烯醯 胺濃度下亦可保持活性。 實施例 6 -來自 Geobacillus thermoglucosidasius Q-6 株的腈水解酶冷亞單位、α亞單位及ORF3部分之基因選[Step 5] The concentration of acrylamide concentration of the nitrilase purified by Geobacillus thermoglucosidasius Q-6 strain is resistant to the production of acrylamide by the nitrilase purified by Geobacillus thermoglucosidasius Q-6 strain. For investigation, a 1 μl nitrilase active partial solution (3.2 mg/ml, 0.05 guanidine phosphate buffer (pH 7.5)) was added to 1 ml of a solution containing 0.5% by weight of acrylonitrile and 35% by weight of acrylamide ( 0.05M potassium phosphate buffer, ρΗ7·5), stirred at 27 ° C for 10 minutes, the concentration of acrylamide in the liquid after the reaction was quantified by HPLC, all acrylonitrile was turned -40- (37) 1327596 Change to acrylamide. From the results, it was found that the nitrilase activity in the aqueous solution purified by the Geobacillus thermoglucosidasius Q-6 strain remained active at a concentration of 35% of a high concentration of acrylamide. Example 6 - Gene selection of nitrilase cold subunit, alpha subunit and ORF3 portion from Geobacillus thermoglucosidasius Q-6 strain
殖 [步驟 1]來自 Geobacillus thermoglucosidasius Q-6 株的腈水解酶之確認及N末端胺基酸序列定義 實施例5所得之膠體過濾層析法之腈水解酶活性部分 溶離液於還原條件下,供給於還原型SDS-聚丙烯醯胺電 泳中《電泳後進行 Coomassie brilliant blue (CBB)的蛋 白質染色,脫色後確認出其爲具有約25K達爾頓及約28K 達爾頓之分子量的2條主要片段。將該2條主要純化蛋白 質,使用點墨(Blotting )裝置(BIO-RAD公司)進行 PVDF膜(MILLIPORE公司)的轉印,經CBB染色後, 將吸附目的之2條片段的部分由PVDF膜切出。其次使用 全自動蛋白質一次構造分析裝置PPSQ-23A (島津製作所 )解讀2種類的蛋白質N末端胺基酸序列。其結果,分子 量25K達爾頓之蛋白質的N末端胺基酸序列爲序列表的 序列號碼23所記載的序列,分子量28K達爾頓之蛋白質 的N末端胺基酸序列則爲序列表的序列號碼24所記載的 序歹!J。 -41 - (38) 1327596 與已知的腈水解酶之胺基酸序列比較結果,25K達爾 頓之聚胜肽鏈爲腈水解酶α亞單位,28K達爾頓之聚胜肽 鏈爲腈水解酶/3亞單位,雖然低但依舊顯示相同性,且爲 編碼該蛋白質者。 [步驟2]對應於Ν末端胺基酸序列之寡核苷酸引子 的合成Colonization [Step 1] Confirmation of nitrilase from Geobacillus thermoglucosidasius Q-6 strain and N-terminal amino acid sequence definition The nitrilase active partial solution of colloidal filtration chromatography obtained in Example 5 was supplied under reducing conditions. The protein staining of Coomassie brilliant blue (CBB) was carried out after electrophoresis in reduced SDS-polyacrylamide electrophoresis, and it was confirmed to be two main fragments having a molecular weight of about 25 K Dalton and about 28 K Dalton after decolorization. The two main purified proteins were transferred to a PVDF membrane (MILLIPORE) using a Blotting apparatus (BIO-RAD), and after CBB staining, the two fragments of the adsorption target were cut by a PVDF membrane. Out. Next, two types of protein N-terminal amino acid sequences were interpreted using the fully automated protein primary structure analyzer PPSQ-23A (Shimadzu Corporation). As a result, the N-terminal amino acid sequence of the protein having a molecular weight of 25 K Dalton is the sequence described in SEQ ID NO: 23 of the Sequence Listing, and the N-terminal amino acid sequence of the protein having a molecular weight of 28 K Darton is the sequence number 24 of the Sequence Listing. The preface of the record! J. -41 - (38) 1327596 Compared with the amino acid sequence of the known nitrilase, the 25K Dalton polypeptide chain is the nitrilase α subunit, and the 28K Dalton polypeptide chain is the nitrilase. The /3 subunit, although low, still shows identity and is the one that encodes the protein. [Step 2] Synthesis of an oligonucleotide primer corresponding to the amino terminal amino acid sequence
由上述所解讀的2種類蛋白質之Ν末端胺基酸序列, 使用該菌屬的密碼子合成以下12種類的退化PCR用寡核 苷酸引子。序列表的序列號碼5所記載的引子l(aFl) '序列表的序列號碼6所記載的引子2 ( a F 2 )、序列表 的序列號碼7所記載的引子3 ( a F 3 ) '序列表的序列號 碼8所記載的引子4 ( a R1 )、序列表的序列號碼9所記 載的引子5 ( a R2 )、序列表的序列號碼1〇所記載的引 子6 ( α R3 )、序列表的序列號碼1 1所記載的引子7 (冷 F 1 )、序列表的序列號碼1 2所記載的引子8 ( /3 F 2 )、 序列表的序列號碼1 3所記載的引子9 ( y? F3 )、序列表 的序列號碼1 4所記載的引子1 〇 ( yg R 1 )、序列表的序列 號碼1 5所記載的引子1 1 ( Θ R 2 )'序列表的序列號碼1 6 所S己載的引子12(泠R3)。且y表示c或t,r表示a或g ’ m表不a或c,k表不g或t,s表示c或g,w表示a或 t,d表示a、g或t,n表示a、c、g或t。同時,考慮到 編碼〇:亞單位及A亞單位之基因於染色體位置而製作出引 子0 -42· (39) (39)The following 12 types of degenerate PCR oligonucleotide primers were synthesized using the codons of the genus of the genus of the two types of proteins as described above. The primer 1 (aF1) described in the sequence number 5 of the sequence table, the primer 2 ( a F 2 ) described in the sequence number 6 of the sequence table, and the primer 3 ( a F 3 ) ' sequence described in the sequence number 7 of the sequence table. The primer 4 ( a R1 ) described in the sequence number 8 of the list, the primer 5 ( a R2 ) described in the sequence number 9 of the sequence table, and the primer 6 ( α R3 ) described in the sequence number 1 of the sequence table, the sequence table The primer 7 (cold F 1 ) described in the sequence number 1 1 , the primer 8 ( /3 F 2 ) described in the sequence number 1 2 of the sequence table, and the primer 9 (y?) described in the sequence number 13 of the sequence listing. F3), the primer number 1 〇 ( yg R 1 ) described in the sequence number of the sequence table, and the sequence number of the sequence list of the primer 1 1 ( Θ R 2 )' listed in the sequence number of the sequence table 1 6 The introduced primer 12 (泠R3). And y represents c or t, r represents a or g 'm represents a or c, k represents g or t, s represents c or g, w represents a or t, d represents a, g or t, and n represents a , c, g or t. At the same time, taking into account the coding 〇: subunit and A subunit genes at the chromosomal location to make a primer 0 - 42 · (39) (39)
13275961327596
[步驟 3 ]由 Geobacillus thermoglucosidasius Q 之染色體DNA萃取及退化PCR 將 Geobacillus thermoglucosidasius Q-6 株以與 例2相同之方法進行培養、回收’使用QIAGEN公 Genomic-tip System ( 500/G)套組由菌體中萃取出染 DNA。以O.lpg的溶解於TE溶液的Geobacillus thermoglucosidasius Q-6株染色體DNA作爲禱型進行 PCR。退化PCR爲,組合序列表的序列號碼5至10 載的引子1至6 '與序列表的序列號碼1 1至16所記 引子7至12之36種而進行。lOOpmol的2種類引子 用各含有5U的Takara公司之Ex Taq DNA聚合酶及 液之全量1〇〇μ1的反應液,進行退化PCR反應嘗試 片段的增幅。反應條件如下所示。96 °C,3分鐘的熱 ,9 6 °C,3 0秒的熱變性後,進行4 2 °C,3 0秒的煅燒 於72°C下進行1分鐘30秒的伸長反應,重複進行35 後,於72°C下進行5分鐘的伸長反應,再保冷於4°C 各PCR產物提供於1重量%的5貪脂糖(agrose)電泳 確認DNA增幅時,僅於組合序列表的序列號碼9所 的引子5 ( a R2 )與序列表的序列號碼1 1所記載的弓 (F 1 )、及組合序列表的序列號碼9所記載的引子 a R2 )與序列表的序列號碼12所記載的引子8 (冷 下進行PCR反應時,確認有約700bp的DNA片段之 6株 實施 司的 色體 退化 所記 載的 ,使 緩衝 DNA 變性 ,再 循環 下。 中, 記載 子7 5 ( F2 ) 增幅 -43- (40) 1327596 [步驟4]退化PCR產物的選殖及增幅DNA片段的鹼 基序列解讀[Step 3] Chromosome DNA extraction and degradation PCR of Geobacillus thermoglucosidasius Q The Geobacillus thermoglucosidasius Q-6 strain was cultured and recovered in the same manner as in Example 2 using the QIAGEN Gong Genomic-tip System (500/G) kit. The DNA is extracted from the body. PCR was carried out using O. lpg genomic DNA of Geobacillus thermoglucosidasius Q-6 strain dissolved in TE solution as a prayer type. The degenerate PCR was carried out by combining primers 1 to 6' of sequence numbers 5 to 10 of the sequence listing table and 36 types of primers 7 to 12 of sequence numbers 1 1 to 16 of the sequence listing. Two kinds of primers of lOOpmol The growth of the degraded PCR reaction fragment was carried out by using 5 U of Takara DNA polymerase of Takara Co., Ltd. and a total amount of 1 〇〇μ1 of the reaction solution. The reaction conditions are as follows. 96 ° C, 3 minutes of heat, 9 6 ° C, 30 seconds of thermal denaturation, 4 2 ° C, 30 seconds of calcination at 72 ° C for 1 minute and 30 seconds of elongation reaction, repeated 35 After that, the elongation reaction was carried out at 72 ° C for 5 minutes, and then kept cold at 4 ° C. Each PCR product was provided by 1% by weight of 5 agarose electrophoresis to confirm the DNA amplification, only the serial number of the combined sequence table. The primer 5 ( a R2 ) of 9 and the arch (F 1 ) described in the sequence number 1 1 of the sequence listing, and the primer a R2 described in the sequence number 9 of the combination sequence table are listed in the sequence number 12 of the sequence listing. Primer 8 (When the PCR reaction was carried out under cold, it was confirmed that the color spectrum of 6 strains of the DNA fragment of about 700 bp was degraded, and the buffer DNA was denatured and recycled. In the case, the increase of the reporter 7 5 ( F2 ) -43- (40) 1327596 [Step 4] Decoding of Degenerate PCR Products and Interpretation of Base Sequences of Amplified DNA Fragments
將增幅DNA片段由膠體中切出,使用QIAquick Gel . Extraction Kit ( QIAGEN 公司)進行萃取,PGEM-TThe amplified DNA fragment was excised from the colloid and extracted using QIAquick Gel . Extraction Kit (QIAGEN), PGEM-T
Vector(proniega 公司)使用 T4 DNA 連接酶(Takara 公 _ 司)進行連接。藉由Ex Taq所得之PCR反應結果爲,3, φ 末端上A爲利用附加1鹼基之性質。連接反應後,轉形大 腸桿菌JM109株,於LB洋菜培養基(50pg/ml安匹西林 ’ 〇·5重量%Bato-酵母菌萃取物、1重量%的Bacto-胰化 蛋白’ 0.5重量%的 NaCl,2.0重量%的 Bacto Agar( ρΗ7·5 ))中 37°C下培養一晚,以安西匹林選擇出轉形體 。於含有安西匹林的LB培養基進行培養之轉形體中依據 常法萃取出質體DNA,將約700bp的插入序列,以載體上 的SP6及T7啓動子之序列作爲引子使用而解讀鹼基序列 其結果,確認出增幅DNA片段內具有681bp的開放 ' 讀架(以下稱爲ORF1 ) 。ORF1的轉譯停止密碼子與以下 的開放讀架(以下稱爲ORF2 )之轉譯開始密碼子ATG之 間爲13bp。由ORF1鹸基序列所推定出的N末端側25個 胺基酸序列,與上述純化的28 K達爾頓之聚胜肽鏈N末 端側的25個胺基酸序列完全相同,相當於序列表的序列 號碼2所記載之胺基酸序列的第1號至第25號之序列。 0RF1的胺基酸序列與已知的腈水解酶之沒亞單位的胺基 -44- (41) 1327596 酸序列雖顯示低相同性,但依舊具有相同性,且表示編碼 該蛋白質。Vector (proniega) uses T4 DNA ligase (Takara) to connect. The result of the PCR reaction obtained by Ex Taq was 3, and the A at the φ end was a property of using 1 base. After the ligation reaction, the Escherichia coli JM109 strain was transformed into LB agar medium (50 pg/ml ampicillin '〇·5 wt% Bato-yeast extract, 1 wt% Bacto-trypsin' 0.5% by weight NaCl, 2.0% by weight of Bacto Agar (ρΗ7·5 )) was cultured overnight at 37 ° C, and the transformant was selected with ansicillin. The plastid DNA was extracted from the transformant cultured in LB medium containing ancillin according to the usual method, and the insert sequence of about 700 bp was used as a primer to interpret the base sequence using the sequence of the SP6 and T7 promoters on the vector. As a result, it was confirmed that the amplified DNA fragment had an open reading frame of 681 bp (hereinafter referred to as ORF1). The translation stop codon of ORF1 is 13 bp between the translation start codon ATG of the following open reading frame (hereinafter referred to as ORF2). The N-terminal 25 amino acid sequence deduced from the ORF1 thiol sequence is identical to the 25 amino acid sequence on the N-terminal side of the purified 28 K Dalton poly-peptide chain, corresponding to the sequence listing. Sequence No. 1 to No. 25 of the amino acid sequence described in SEQ ID NO: 2. The amino acid sequence of 0RF1 and the amino-44-(41) 1327596 acid sequence of the subunit of the known nitrilase show low identity but still have the same identity and indicate that the protein is encoded.
Geobacillus thermoglucosidasius Q-6 株的膳水解酶冷Geobacillus thermoglucosidasius Q-6 strain of hydrolytic enzyme cold
亞單位爲編碼226胺基酸,與既存的數據中具有高相同性 蛋白質的胺基酸序列者,其相同度順序爲’與克列伯氏桿 菌(Klebsiela)屬MC12609株的腈水解酶/5亞單位爲43 %.相同度,農桿菌(Agrobacterium)屬的腈水解酶点亞單 位爲 42%相同度,紅假單細胞屬(Rhodopseudomonas ) 屬CGA3095株的腈水解酶沒亞單位爲40%之非常低的相 同度。再者,與來自與Geobacillus屬近緣的桿菌屬蛋白 質之胺基酸的相同度爲,與嗜熱菌Bacillus BR449株的腈 水解酶;3亞單位爲 35.0%,嗜熱菌Bacillus smithii SC-】05-1株的腈水解酶/3亞單位爲34.5%皆極低。另一方面 ,嗜熱菌Bacillus BR449株的腈水解酶yS亞單位,與嗜熱 菌Bacillu smithii SC-J05-1株的腈水解酶召亞單位爲85.6 %之高相同度。 [步驟 5] Geobacillus thermoglucosidasius Q-6 株腈水 解酶α亞單位部分的基因之選殖 爲選殖上述所得之 Geobacillus thermoglucosidasius Q-6株腈水解酶亞單位部分之基因的周邊基因、及α亞 單位部分的基因,進行退化PCR。參考位於已知腈水解酶 α亞單位的下游之基因,作成以下2種類的退化PCR寡核 苷酸引子。序列表的序列號碼1 7係記載引子1 3 ( pR 1 ) -45- (42) 1327596 、序列表的序列號碼1 8係記載引子1 4 ( PR2 )。 再者,事先在解讀鹼基序列的Geobacillus thermoglucosidasius Q-6株之腈水解酶召亞單位內,作成 以下2種類的PCR增幅用寡核苷酸引子。序列表的序列號 碼19係記載引子15 ( Q6AposF)、序列表之序列號碼20 係記載引子16 ( Q6abFl )。以0. lpg的The subunit is an amino acid sequence encoding a 226 amino acid and having a homologous protein in the existing data, and the order of identity is 'the nitrilase/5 of the Klebsiela genus MC12609 strain. The subunit is 43%. The degree of similarity, the nitrilase point subunit of the genus Agrobacterium is 42% identical, and the nitrilase of the Rhodopseudomonas genus CGA3095 has no subunit of 40%. Very low degree of identity. Further, the degree of identity with the amino acid from the Bacillus protein belonging to the genus Geobacillus is nitrilase with the thermophilic strain Bacillus BR449; 3 subunits are 35.0%, and the thermophilic bacteria Bacillus smithii SC-] The nitrilase/3 subunit of the 05-1 strain was extremely low at 34.5%. On the other hand, the nitrilase yS subunit of the thermophilic Bacillus BR449 strain was as high as 85.6 % identical to the nitrilase subunit of the thermophilic Bacillu smithii SC-J05-1 strain. [Step 5] The gene of Geobacillus thermoglucosidasius Q-6 strain nitrilase α subunit is selected as the peripheral gene and α subunit of the gene of the cytohydrolase subunit of Geobacillus thermoglucosidasius Q-6 strain obtained above. Part of the gene is subjected to degenerate PCR. The following two types of degenerate PCR oligonucleotide primers were made with reference to a gene located downstream of the known nitrilase α subunit. The sequence number of the sequence listing is 1 7 and the primer 1 3 ( pR 1 ) -45- (42) 1327596 and the sequence number of the sequence listing 1 8 are described as the primer 1 4 (PR2). Further, in the nitrilase subunit of the Geobacillus thermoglucosidasius Q-6 strain which interprets the base sequence, the following two types of oligonucleotide primers for PCR amplification are prepared. The sequence number of the sequence table is 19, and the primer 16 (Q6abF1) is described in the primer number 15 (Q6AposF) and the sequence number 20 of the sequence table. 0. lpg
thermoglucosidasius Q-6株的染色體DNA作爲鑄型進行退 化PCR。退化PCR反應係於煅燒溫度5(TC下,組合序列 表中序列號碼17' 18所記載的引子13、14,與序列表中 序列號碼18' 19所記載的引子15' 16等4種而進行。其 結果,組合序列表的序列號碼1 7所記載的引子1 3 ( pR 1 )與序列表的序列號碼18所記載的引子15 ( Q6AposF) 進行PCR反應時,確認存在約0.8 kb之增幅DNA產物。 並且,組合序列表的序列號碼1 6所記載的引子1 3 ( pR 1 )與序列表的序列號碼19所記載的引子16 ( Q6abFl )進 行PCR反應時,確認存在約i.5k增幅DNA產物。此外, 其他組合進行PCR反應時,則無法確認增幅DNA產物的 存在。 將組合序列表的序列號碼1 6所記載的引子1 3 ( pR 1 )與序列表的序列號碼19所記載的引子15 ( Q6AposF) 進行退化PCR反應所增幅的〇.8kbDNA片段由瓊脂糖膠切 出,依據常法萃取出DNA,插入pGEM-TVector(The chromosomal DNA of the thermoglucosidasius Q-6 strain was subjected to denaturing PCR as a mold. The degenerate PCR reaction is carried out at a calcination temperature of 5 (TC, in the combination of the primers 13 and 14 described in SEQ ID NO: 17' 18 in the sequence listing table, and four types of primers 15' 16 described in SEQ ID NO: 18' 19 in the Sequence Listing. As a result, when the primer 13 (pR 1 ) described in the SEQ ID NO: 17 of the sequence listing table and the primer 15 (Q6AposF) described in SEQ ID NO: 18 of the Sequence Listing were subjected to a PCR reaction, it was confirmed that an amplified DNA of about 0.8 kb was present. Further, when the primer 13 (pR 1 ) described in the SEQ ID NO: 16 of the sequence listing is subjected to a PCR reaction with the primer 16 (Q6abF1) described in SEQ ID NO: 19 of the Sequence Listing, it is confirmed that there is about i.5k of amplified DNA. In addition, when the PCR reaction is carried out in other combinations, the presence of the amplified DNA product cannot be confirmed. The primer 1 3 ( pR 1 ) described in SEQ ID NO: 16 of the sequence listing and the primer shown in SEQ ID NO: 19 of the Sequence Listing are included. 15 (Q6AposF) The 〇.8kb DNA fragment amplified by the degenerate PCR reaction was excised from agarose gel, and the DNA was extracted according to the usual method and inserted into pGEM-TVector (
Promega公司),使大腸桿菌 JM109株轉形,藉由 50pg/ml的安西匹林選擇出重組體。在含安西匹林的LB -46- (43) 1327596Promega, Inc., transformed E. coli JM109 strain, and selected recombinants by 50 pg/ml of ancillin. In LB-46- (43) 1327596 containing ancillin
培養基中培養轉形體,依據常法萃取出質體DNA,解讀約 0.8kb的插入部分之鹼基序列。其結果,確認出618bp的 開放讀架(以下稱爲 ORF2)。由 ORF2的鹼基序列所推 定出的N末端側29個胺基酸序列,與上述純化的25 K達 爾頓之聚胜肽鏈之N末端側之29個胺基酸序列完全一致 ,相當於序列表的序列號碼1所記載的胺基酸序列的第1 號至第29號之序列。ORF2的胺基酸序列與已知的腈水解 酶α亞單位之胺基酸序列,雖然低但依舊顯示相同性,係 爲編碼該蛋白質者。The transformant was cultured in the medium, and the plastid DNA was extracted according to the usual method, and the base sequence of the insert portion of about 0.8 kb was read. As a result, an open reading frame of 618 bp (hereinafter referred to as ORF2) was confirmed. The N-terminal side 29 amino acid sequence deduced from the base sequence of ORF2 is identical to the 29 amino acid sequence on the N-terminal side of the purified 25 K Dalton poly-peptide chain, equivalent to the sequence. The sequence of No. 1 to No. 29 of the amino acid sequence described in SEQ ID NO: 1 in the list. The amino acid sequence of ORF2 and the amino acid sequence of the known nitrile hydrolase alpha subunit, although low, still exhibit identity, are those encoding the protein.
Geobacillus thermoglucosidasius Q-6 株的腈水解酶 α 亞單位爲編碼205胺基酸,與既存的數據中具有高相同性 蛋白質的胺基酸序列,其相同度高低依序爲,與嗜熱菌The nitrilase α subunit of Geobacillus thermoglucosidasius Q-6 strain is an amino acid sequence encoding 205 amino acid, which has high homology with the existing data, and the degree of homology is the same as that of thermophilic bacteria.
Bacillus BR4 49株的腈水解酶/3亞單位爲較低之66.3%, 與嗜熱菌Bacillus smithii SC-J05-1株的腈水解酶/5亞單 位爲較低之63.9%。另一方面,嗜熱菌Bacillus BR449株 的腈水解酶/3亞單位與嗜熱菌 Bacillus smithii SC-J05-1 株的腈水解酶/3亞單位,則具有8 8.8 %之高相同性。 根據上述,確認 Geobacillus thermoglucosidasius Q-6 株中,由5’末端側上流起,係以編碼28K達爾頓之腈水 解酶yS亞單位之基因、編碼25K達爾頓之腈水解酶α亞單 位之基因的順序,鄰接地而存在。 [步驟 6] Geobacillus thermoglucosidasius Q-6 株的腈 水解酶α亞單位及泠亞單位部分之PET28a ( + )載體的 -47- (44) 1327596 插入 以上述經解讀的鹼基序列爲準,作成以下2種腈水解 酶α亞單位及yS亞單位部分以PCR增幅時的寡核苷酸引子 。序列表的序列號碼21所記載的引子17(Q6ab-FbT)、 序列表的序列號碼 22所記載的引子18 ( Q6ABall-Rl-BglII-Τ)。序列表的序列號碼21所記載的引子17爲設 計成限制酶部位N d e I中,G e 〇 b a c i 11 u sThe nitrilase/3 subunit of Bacillus BR4 49 strain was 66.3% lower, and the nitrilase/5 subunit of the thermophilic Bacillus smithii SC-J05-1 strain was 63.9% lower. On the other hand, the nitrilase/3 subunit of the thermophilic Bacillus BR449 strain and the nitrilase/3 subunit of the thermophilic Bacillus smithii SC-J05-1 strain have a high homology of 88.88%. According to the above, it was confirmed that the Geobacillus thermoglucosidasius Q-6 strain was flown from the 5' end side, and the gene encoding the 28K Dalton nitrilase yS subunit and the gene encoding the 25K Dalton nitrilase α subunit were used. The order exists adjacently. [Step 6] The nitrilase α subunit of the Geobacillus thermoglucosidasius Q-6 strain and the -48-(44) 1327596 of the PET28a (+) vector of the 泠 subunit portion are inserted in the above-described interpreted base sequence, and the following The oligonucleotides of the two nitrilase α subunits and the yS subunit fraction were amplified by PCR. The primer 18 (Q6ab-FbT) described in SEQ ID NO: 21 of the Sequence Listing and the primer 18 (Q6ABall-Rl-BglII-Τ) described in SEQ ID NO: 22 of the Sequence Listing. The primer 17 described in SEQ ID NO: 21 of the Sequence Listing is designed to be a restriction enzyme site N d e I, G e 〇 b a c i 11 u s
thermoglucosidasius Q-6株的腈水解酶/3亞單位的轉譯開 始密碼子。序列表的序列號碼2 2所記載的引子1 8中, GeobaciUus thermoglucosidasius Q-6 株的腈水解酶 α 亞單 位之轉譯終止密碼子的下面直接導入限制酶Bg III site。 以 Geobacillus thermoglucosidasius Q-6 株的染色體 DNA 作爲鑄型,使用各100pmol的序列表的序列號碼21、22 所記載的引子17、18進行PCR反應。使用Ex Taq DNA 聚合酶,以全量爲ΙΟΟμΙ下進行96°C,3分鐘的熱變性後 ,再以96°C 30秒熱變性,60°C 30秒的煅燒,72°C 1分鐘 30秒的伸長反應之條件下進行30次循環之PCR後,進行 7 2°C下5分鐘的伸長反應,再於下冷卻。PCR反應後 的溶液提供於1.5重量%的瓊脂糖膠電泳時,取認出約 1.3kb的DNA片段增幅。該增幅DNA產物由瓊脂糖膠以 常法萃取,連接於Promega公司的pGEM-Teasy Vector上 ,以轉形大腸桿菌 JM109株。再由轉形體萃取出質體 DNA,解讀插入部分的鹼基序列,確認以PCR增幅並無產 生錯誤。 -48- (45) (45)1327596 其次,該質體以Ndel、EcoRl限制酶消化後,提供於 1.5重量%瓊脂糖膠電泳中,約i.3Kb的插入DNA由瓊脂 糖膠中切出,依據常法萃取。表現載體使用Novagene公 司之 pET-28a ( + ) Vector。該 DNA 以 Ndel、EcoRl 限 制酶消化後’提供於1重量%瓊脂糖膠電泳中,約5.3 Kb 的DNA片段依據常法萃取。這些插入片段與載體依據常 法進行連接反應,轉形大腸桿菌109株,以卡那黴素耐 性選擇出的轉形體萃取出質體DN A,選出導入插入片段之 質體。由上所述,取得以 Geobacillus thermoglucosidasius Q-6株之腈水解酶^亞單位及亞單位部分作爲插入片段 而導入之表現質體。該完成的質體則稱爲pET-28a ( + )-β a 。 [步驟7]藉由菌落雜交取得來自Geobacillus thermoglucosidasius Q-6株之腈水解酶周邊基因。 (1 )螢光標識DIG探針的製作 使用序列表的序列號碼25所記載的Geobacillus thermoglucosidasius Q-6株之腈水解酶〇:亞單位部分之 DNA作爲鑄型,由羅氏公司製作的DIG-DNA標識套組作 成螢光標識探針。製造方法爲依據羅氏公司的DIG手冊。 (2)染色體南方雜交法 將於實施例6之步驟3所調製的Geobacillus thermoglucosidasius Q-6株的染色體DNA使用各種限制酶 進行消化,提供於1重量%瓊脂糖膠電泳中。將瓊脂糖膠 -49- (46) 1327596The translational start codon of the nitrilase/3 subunit of the thermoglucosidasius Q-6 strain. In the primer 18 described in SEQ ID NO: 2 2 of the Sequence Listing, the translational stop codon of the nitrilase α subunit of the GeobaciUus thermoglucosidasius Q-6 strain is directly introduced into the restriction enzyme Bg III site. The chromosomal DNA of the Geobacillus thermoglucosidasius Q-6 strain was used as a mold, and the PCR reaction was carried out using the primers 17 and 18 described in the sequence numbers 21 and 22 of each sequence of 100 pmol. Using Ex Taq DNA polymerase, the whole amount was ΙΟΟμΙ at 96 ° C, heat denaturation for 3 minutes, then heat denaturation at 96 ° C for 30 seconds, calcination at 60 ° C for 30 seconds, 72 ° C for 1 minute and 30 seconds. After 30 cycles of PCR under the conditions of the elongation reaction, an elongation reaction at 72 ° C for 5 minutes was carried out, followed by cooling. The solution after the PCR reaction was subjected to 1.5% by weight of agarose gel electrophoresis, and an increase of about 1.3 kb DNA fragment was recognized. The amplified DNA product was extracted by agarose gel and ligated to Promega's pGEM-Teasy Vector to transform Escherichia coli JM109 strain. The plastid DNA was extracted from the transformant, and the base sequence of the inserted portion was read, and it was confirmed that no increase was caused by the PCR amplification. -48- (45) (45) 1327596 Next, the plastid was digested with Ndel and EcoRl restriction enzymes and provided in 1.5% by weight agarose gel electrophoresis. The inserted DNA of about i.3Kb was excised from the agarose gel. Extracted according to the usual method. The performance vector uses Novagene's pET-28a ( + ) Vector. The DNA was digested with Ndel and EcoRl, and was supplied in 1% by weight agarose gel electrophoresis. A DNA fragment of about 5.3 Kb was extracted according to the usual method. These inserts were ligated with the vector according to the usual method, and 109 strains of Escherichia coli were transformed, and the plastid DN A was extracted with a transformant selected from kanamycin resistance, and the plastid into which the insert was introduced was selected. From the above, the expression plastid introduced by using the nitrilase subunit and the subunit portion of the Geobacillus thermoglucosidasius Q-6 strain as an insert was obtained. The completed plastid is called pET-28a ( + )-β a . [Step 7] A nitrilase peripheral gene derived from Geobacillus thermoglucosidasius Q-6 strain was obtained by colony hybridization. (1) Preparation of the fluorescent marker DIG probe The nitrilase G of the Geobacillus thermoglucosidasius Q-6 strain described in SEQ ID NO: 25 of the Sequence Listing: the DNA of the subunit portion was used as a mold, DIG-DNA produced by Roche The identification kit is made into a fluorescent marker probe. The manufacturing method is based on Roche's DIG manual. (2) Chromosome Southern Hybridization The chromosomal DNA of the Geobacillus thermoglucosidasius Q-6 strain prepared in the third step of Example 6 was digested with various restriction enzymes and provided in 1% by weight agarose gel electrophoresis. Will agarose gel -49- (46) 1327596
內的DNA轉錄於尼龍膜Hybond-N+(AMERSHAM公司) 後,使用先前調製的螢光標識DIG探針,進行染色體南方 雜交法。將每片經DN A轉錄 '固定之薄膜浸漬於1 〇ml的 雜交緩衝液(含有1重量%脫脂奶粉、0.1重量%的N-月 桂醯基肌胺酸、0.02重量%的SDS、50重量%的甲醯胺 之5xSSC),於42°C下進行2小時的預先雜交。將與上述 相同所做成的螢光標識探針100ng,於95 °C下進行1〇分 鐘的煮沸及急冷處理而使其進行熱變性,再添加於預先雜 交緩衝液中,於42 °C進行一晚之雜交。雜交後的膜以 150ml的含有0.1重量%SDS之2xSSC於室溫下洗淨2次 。其次於65°C下加熱,再以 150ml的含有0.1重量%的 SDS之lxSSC於室溫下洗淨5分鐘進行2次。繼續以 100ml的馬來酸緩衝液(0.1M馬來酸,0.15M NaCl,使用 NaOH調製PH7.5 )洗淨5分鐘後,於50ml的封鎖溶液( blocking solution,含有 0.3 重量 % 的 Tween20、0.15M NaCl及1重量%的脫脂奶粉之0.1M馬來酸緩衝液; ρΗ7·5 )中,室溫下進行30分鐘的封鎖處理。以20ml的 封鎖溶液稀釋至抗羥基洋地黃毒配質-AP爲75mU/ml,室 溫下進行30分鐘的抗體反應後,於100ml的洗淨緩衝液 (含有 0.3 重量 % Tween20、0· 15M NaCl 之 0.1M 的馬來 酸緩衝液;pH7.5)中將膜洗淨5次,將未結合的抗體洗 掉。於 20ml 的檢測緩衝液(0.1M Tris-HCl,0.1M NaCl, PH9.5)中進行5分鐘的平衡化處理後,10ml的檢測緩衝 液中將34μ1的100mg/ml之NBT (亞硝基藍雙偶氮氯化物 -50- (47) 1327596 )溶液,作成以35μ1的50mg/ml的BCIP ( 5-溴-4-氯-3-吲哚基磷酸鹽)溶液稀釋之發色基質溶液NBT/BCIP,將 膜完全浸漬於其中,避光下恆溫培養約1分鐘至16小時 。恆溫培養中,不可移動或搖晃桌子下而確認其發色。其 結果,得知藉由限制酶Hind III分解的約2.3kb基因片段 中,含有腈水解酶α亞單位部分的下游基因。After the inside DNA was transcribed into the nylon membrane Hybond-N+ (AMERSHAM), the chromosome Southern hybridization method was carried out using the previously prepared fluorescent marker DIG probe. Each piece of DN A-transcribed 'fixed film was immersed in 1 〇ml of hybridization buffer (containing 1% by weight of skim milk powder, 0.1% by weight of N-lauroyl sarcosine, 0.02% by weight of SDS, 50% by weight 5xSSC of methotrexate was pre-hybridized at 42 °C for 2 hours. 100 ng of the fluorescent labeling probe prepared in the same manner as described above was subjected to boiling and quenching treatment at 95 ° C for 1 minute, and then thermally denatured, and then added to the pre-hybridization buffer at 42 ° C. One night of hybridization. The hybridized membrane was washed twice with 150 ml of 2xSSC containing 0.1% by weight of SDS at room temperature. This was followed by heating at 65 ° C and washing twice with 150 ml of lxSSC containing 0.1% by weight of SDS at room temperature for 5 minutes. Continue to wash with 100 ml of maleic acid buffer (0.1 M maleic acid, 0.15 M NaCl, NaOH adjusted pH 7.5) for 5 minutes, then in a 50 ml blocking solution (locking solution containing 0.3% by weight of Tween20, 0.15) M NaCl and 1% by weight of skim milk powder in 0.1 M maleic acid buffer; ρΗ7·5) were blocked at room temperature for 30 minutes. Dilute with 20ml of blocking solution to hydroxydigoxigenin-AP at 75mU/ml, and perform antibody reaction at room temperature for 30 minutes, then in 100ml of washing buffer (containing 0.3% by weight of Tween20, 0·15M NaCl) The membrane was washed 5 times in 0.1 M maleic acid buffer; pH 7.5), and the unbound antibody was washed away. After 5 minutes of equilibration in 20 ml of assay buffer (0.1 M Tris-HCl, 0.1 M NaCl, pH 9.5), 34 μl of 100 mg/ml of NBT (nitroso blue) in 10 ml of assay buffer Bisazo-5-(47) 1327596) solution, prepared as a chromogenic substrate solution NBT/ diluted with 35 μl of 50 mg/ml BCIP (5-bromo-4-chloro-3-indolyl phosphate) solution BCIP, the membrane is completely immersed therein, and cultured at a constant temperature in the dark for about 1 minute to 16 hours. In constant temperature culture, do not move or shake the table to confirm its color. As a result, it was found that a downstream gene containing a nitrilase α subunit portion was found in a gene fragment of about 2.3 kb which was decomposed by the restriction enzyme Hind III.
(3)藉由菌落雜交得到目的選殖 (i)使用於菌落雜交的質體基因庫之製作 其次,使用相同螢光標識DIG探針進行菌落雜交。 將 1 0// g 的 Geobacillus t h e r m o g 1 u c o s i d a s i u s Q - 6 株的染 色體DNA提供於1重量%的瓊脂糖膠電泳上,由該瓊脂 糖膠上切出含有約2.0kb至2.6kb的DNA片段,以前述相 同方法萃取及純化DNA片段。所得之DNA片段使用DNA 連接套組(寶酒造公司製)導入pUC 118質體載體(寶酒 造公司製)之多選殖位置(multicloning site)內之 Hind III限制酶部位。連接所使用的pUCl 18質體載體DNA爲 ,經限制酶Hind III消化後以酚/氯仿處理及乙醇沈澱進 行純化,繼續使用鹼性磷酸酶(寶酒造公司製)進行5’末 端之脫磷酸化處理後,再次進行酚/氯仿處理及乙醇沈澱 ,提供於瓊脂糖膠電泳上,再藉由瓊脂糖膠萃取及再純化 者。 使用可將約2.Okb至2.6kb之片段化Geobacillus thermoglucosidasius Q-6 株的染色體 DNA 與 pUC118 質體 載體於Hind III限制酶部位進行連接之溶液,進行大腸桿 -51 - (48) 1327596 菌JM109株的轉形,植菌於含有5〇pg/ml的安西匹林、 1111]^的1?丁0及2重量%乂-〇&1(5-溴-4-氯-3-吲哚基-/5-D-半乳糖吡喃苷)之LB洋菜培養基(0.5重量%Bacto-酵 母菌萃取物、1重量%的Bacto-胰化蛋白、0.5重量%的 NaCl、2.0 重量 %的 Agar; pH7.5),經 37。(:。(:下一晚培 養後。其結果’得到多數培養皿中,其出現每一培養皿有 50個至500個的白色菌落者。(3) Target selection by colony hybridization (i) Production of plastid gene pool for colony hybridization Next, colony hybridization was carried out using the same fluorescent marker DIG probe. The chromosomal DNA of 10 g/g g of Geobacillus thermog 1 ucosidasius Q-6 strain was subjected to 1% by weight agarose gel electrophoresis, and a DNA fragment containing about 2.0 kb to 2.6 kb was excised from the agarose gel. The DNA fragment was extracted and purified in the same manner as described above. The obtained DNA fragment was introduced into the Hind III restriction enzyme site in the multicloning site of the pUC 118 plastid vector (manufactured by Takara Shuzo Co., Ltd.) using a DNA ligation kit (manufactured by Takara Shuzo Co., Ltd.). The pUC1 18 plastid vector DNA used for the ligation was purified by restriction enzyme Hind III, purified by phenol/chloroform treatment and ethanol precipitation, and further subjected to dephosphorylation at the 5' end using alkaline phosphatase (manufactured by Takara Shuzo Co., Ltd.). Thereafter, the phenol/chloroform treatment and ethanol precipitation were carried out again, and the mixture was subjected to agarose gel electrophoresis, and then extracted and re-purified by agarose gel. A large intestine rod-51 - (48) 1327596 strain JM109 was used by using a solution in which the chromosomal DNA of the fragmented Geobacillus thermoglucosidasius Q-6 strain of about 2.Okb to 2.6 kb was ligated to the Hind III restriction enzyme site of the pUC118 plastid vector. The transformation of the strain was carried out in an ancifluorin containing 5 〇pg/ml, 1 butyl 0 and 2% by weight of 乂-〇 & 1 (5-bromo-4-chloro-3-indole) LB-Agar medium (0.5% by weight of Bacto-yeast extract, 1% by weight of Bacto-trypsin, 0.5% by weight of NaCl, 2.0% by weight of Agar) ; pH 7.5), via 37. (: (: after the next night of cultivation. The result) was obtained in most petri dishes, which showed 50 to 500 white colonies per dish.
對於這些染色體DNA之質體基因庫,使用先前調製 之螢光標識DIG探針,以進行菌落雜交,並選殖出含有目 的腈水解酶α亞單位的下游基因之克隆。 (ii)藉由菌落雜交取得目的克隆 首先,將出現白色菌落之約1000克隆,使用經殺菌 接種針,畫線培養於LB洋菜培養基上,此時爲使膜雜交 的LB洋菜培養基、與保存用LB洋菜培養基同樣進行畫 線培養,於30°C下培養一晚。For the plastid gene pool of these chromosomal DNAs, a previously modulated fluorescent marker DIG probe was used to perform colony hybridization, and a clone containing a downstream gene of the target nitrilase α subunit was selected. (ii) Obtaining the clone of interest by colony hybridization First, about 1000 clones of white colonies will appear, and the sterilized inoculation needles are used to draw the line on the LB agar medium, at this time, the LB agar medium which hybridizes the membrane, and The cells were cultured in the same manner as the LB vegetable medium, and cultured at 30 ° C overnight.
其次,在生成菌落的培養皿上靜置 AMERSHAM公司 製作的尼龍膜Hyb〇nd-N+,1分鐘後使用鑷子慢慢地取出 。將剝開的膜以菌體附著面朝上的情況下浸漬於變性溶液 (含有1.5M的NaCl之0.5MNaOH水溶液)7分鐘,浸漬 於中和溶液(含有1.5M的NaCl與ImM之EDTA· 2Na之 0.5M Tris-鹽酸水溶液;ρΗ7·2)中3分鐘,再浸漬於新中 和溶液中3分鐘。其次’再於2xSSC溶液(1L的lxSSC 中含有18.7 6g的NaCl、4.41g的檸檬酸鈉)進行1次洗淨 後,在乾燥的濾紙上將膜風乾。並且,以進行120mJ/Cm2 -52- (49) (49)1327596 的UV照射,來進行膜上的DNA固定。 (iii )藉由DIG抗體的檢測及目的克隆之分離 將經由上述處理後且DNA被固定的膜,浸漬於每片 爲10ml的雜交緩衝液(含有1重量%脫脂奶粉、〇.1重量 %的N-月桂醯基肌胺酸、0.02重量%的SDS、50重量% 的甲醯胺之5xSSC ),於42°C下進行2小時的預先雜交。 將與上述相同所做成的螢光標識探針100 ng於95 °C下進行 10分鐘的煮沸及急冷處理而使其進行熱變性,再添加於預 先雜交緩衝液中,進行42 °c —晚之雜交。雜交後的膜以 150ml的含有0.1重量%SDS之2xSSC於室溫下洗淨2次 。其次於65°C下加熱,再以150ml的含有0.1重量%的 SDS之lxSSC於室溫下洗淨5分鐘進行2次。繼續以 100ml的馬來酸緩衝液(0.1M馬來酸,0.15M NaCl,並使 用NaOH調製至ρΗ7·5 )洗淨5分鐘後,於50ml的封鎖溶 液(blocking solution,含有 0.3 重量 % 的 Tween20、 0.15M NaCl及1重量%的脫脂奶粉之0.1M馬來酸緩衝液 ;pH7.5 )中,室溫下進行30分鐘的封鎖處理。以20ml 的封鎖溶液稀釋至抗羥基洋地黃毒配質-AP爲75rnU/inl, 室溫下進行30分鐘的抗體反應後,於100ml的洗淨緩衝 液(含有 0.3 重量 % Tween20、0· 15M NaCl 之 0.1M 的馬 來酸緩衝液;PH7.5)中將膜洗淨5次,將未結合的抗體 洗掉。於20ml的檢測緩衝液(0· 1M Tris-HCl,0.1M NaCl ,PH9.5 )中進行5分鐘的平衡化處理後,於10ml的檢測 緩衝液中將34μ1的100mg/ml之NBT (亞硝基藍雙偶氮氯 -53- (50) 1327596 化物)溶液以35μ1的50mg/ml的BCIP溶液稀釋之發色基 質溶液NBT/BCIP,將膜完全浸漬於其中,避光下恆溫培 養約1分鐘至16小時。恆溫培養中,不可移動或搖晃桌 子下確認其發色。其結果,在該膜上的1000克隆中,發 現正信號的有4處,並將與該位置重複的正克隆由原先培 養皿作確定。 (4 )含有 Geobacillus thermoglucosidasius Q-6 株的Next, the nylon membrane Hyb〇nd-N+ manufactured by AMERSHAM was placed on a petri dish where colonies were formed, and was slowly taken out using tweezers after 1 minute. The peeled film was immersed in a denaturation solution (0.5 M NaOH aqueous solution containing 1.5 M NaCl) with the bacterial adhering side facing up for 7 minutes, and immersed in a neutralization solution (containing 1.5 M NaCl and 1 mM EDTA·2Na). 0.5 M Tris-hydrochloric acid solution; ρ Η 7 · 2) for 3 minutes, and then immersed in the new neutralization solution for 3 minutes. Next, the solution was again washed once in a 2xSSC solution (1.87 g of NaCl and 4.41 g of sodium citrate in 1 L of lxSSC), and then the film was air-dried on a dried filter paper. Further, DNA fixation on the membrane was carried out by UV irradiation of 120 mJ/cm 2 -52-(49) (49) 1327596. (iii) by the detection of the DIG antibody and the separation of the target clone, the membrane which was fixed after the above treatment and immobilized with DNA was immersed in 10 ml of the hybridization buffer per tablet (containing 1% by weight of skim milk powder, 〇.1% by weight) N-lauric acid creatinine, 0.02% by weight of SDS, 50% by weight of 5xSSC of formamide, was pre-hybridized at 42 ° C for 2 hours. 100 ng of the fluorescent marker probe prepared in the same manner as above was boiled and quenched at 95 ° C for 10 minutes to be thermally denatured, and then added to the pre-hybridization buffer to carry out 42 ° C - late Hybridization. The hybridized membrane was washed twice with 150 ml of 2xSSC containing 0.1% by weight of SDS at room temperature. Next, it was heated at 65 ° C, and washed twice with 150 ml of lxSSC containing 0.1% by weight of SDS at room temperature for 5 minutes. Continue to wash with 100 ml of maleic acid buffer (0.1 M maleic acid, 0.15 M NaCl, and NaOH to ρΗ7·5) for 5 minutes, then in a 50 ml blocking solution (containing 0.3% by weight of Tween20). 0.15 M NaCl and 1% by weight of skim milk powder in 0.1 M maleic acid buffer; pH 7.5), and blocked for 30 minutes at room temperature. Dilute with 20ml of blocking solution to hydroxydigoxigenin-AP at 75rnU/inl, perform antibody reaction at room temperature for 30 minutes, and then wash in 100ml of washing buffer (containing 0.3% by weight of Tween20, 0·15M NaCl). The membrane was washed 5 times in 0.1 M maleic acid buffer; pH 7.5), and the unbound antibody was washed away. After 5 minutes of equilibration in 20 ml of assay buffer (0.1 M Tris-HCl, 0.1 M NaCl, pH 9.5), 34 μl of 100 mg/ml of NBT (nitrogen) in 10 ml of assay buffer Base blue bisazo chloride-53-(50) 1327596 compound) The chromogenic substrate solution NBT/BCIP diluted with 35 μl of 50 mg/ml BCIP solution, the membrane was completely immersed therein, and cultured in the dark for about 1 minute. Up to 16 hours. In constant temperature culture, do not move or shake the table to confirm its color. As a result, in the 1000 clones on the membrane, four positive signals were found, and the positive clones overlapping with the position were determined from the original culture dish. (4) Containing Geobacillus thermoglucosidasius Q-6 strain
腈水解酶α亞單位部分的下游基因之正克隆解析 經確認的正克隆由培養皿接種至含有安西匹林的LB 液體培養基上,進行37°C,250rpm的一晚震盪培養。菌 體經離心後回收,依據常法萃取質體DNA»質體DNA以 限制酶Hind III消化後,提供於1.5重量%的瓊脂糖膠電 泳中,在確認所插入片段之尺寸時,發現得到約2.3kb之 大小。再者,藉由數種形式的PCR及限制酶的消化形式, 來確定插入片段係含有 Geobacillus thermoglucosidasius Q-6株的腈水解酶α亞單位部分。 將由上述取得之此質體命名爲pUC118-Q6Hin2.3,定 義插入片段之全鹼基序列。Geobacillus thermoglucosidasius Q-6株的腈水解酶及下游基因群的限 制酶地圖及基因構成係如圖1表示者。 其結果,確認出插入片段中3 3 9bp的鹼基序列至開放 讀架(以下稱爲0RF3 ),係與腈水解酶α亞單位(0RF2 )的5’末端側下游在同方向下存在。ORF2的轉譯終止密 碼子與0RF3的轉譯開始密碼子之間爲12bp,0RF3的轉 -54- (51) (51)1327596 譯終止密碼子與再下游位置的ORF之轉譯開始密碼子間 爲145 bp。0RF3爲編碼1 12胺基酸,其與既有資料庫中 的下述蛋白質有著極低之相同性。既有的資料庫中與相同 性高的序列上,其胺基酸爲一致的比率爲,與桿菌屬 BR449 株的 P12K 爲 31%,與 Rhodococcus rhodochrous J1 菌株的 NhhG 爲 31%,與 Rhodococcus rhodochrous J1 菌株的NhlE爲21%,與嗜熱假諾卡氏菌(Positive cloning analysis of the downstream gene of the nitrilase α subunit portion The positive clone was confirmed to be inoculated on a LB liquid medium containing ancillin by a culture dish, and subjected to shaking culture at 37 ° C for one night at 250 rpm. The cells were recovered by centrifugation, and the plastid DNA was extracted according to the usual method to restriction enzyme Hind III digestion, and then provided in 1.5% by weight of agarose gel electrophoresis. When the size of the inserted fragment was confirmed, it was found to be about The size of 2.3kb. Furthermore, the inserts were determined to contain the nitrilase alpha subunit portion of the Geobacillus thermoglucosidasius Q-6 strain by several forms of PCR and restriction enzyme digestion. The plasmid obtained from the above was named pUC118-Q6Hin2.3, and the entire base sequence of the insert was defined. The nitrilase of the Geobacillus thermoglucosidasius Q-6 strain and the restriction enzyme map and gene organization of the downstream gene group are shown in Fig. 1. As a result, the base sequence of 3 3 9 bp in the insert was confirmed to open reading frame (hereinafter referred to as 0RF3), and it was present in the same direction downstream of the 5' end side of the nitrilase α subunit (0RF2). The translation stop codon of ORF2 is 12 bp between the translation start codon of ORF3 and the translation start codon of ORF3 is -54-(51) (51)1327596. The translation start codon and the translation of the ORF at the downstream position are 145 bp between the start codons. . 0RF3 encodes a 1 12 amino acid which is extremely similar to the following proteins in the existing database. In the existing database, the ratio of the amino acid to the sequence with the same high identity was 31% for the P12K of the Bacillus strain BR449, and 31% for the Rhhococcus rhodochrous J1 strain with the Rhodococcus rhodochrous J1. The strain has a NhlE of 21% with Pseudomonas thermophilus (
Pseudonocardia thermophila ) JCM3095 株的 P16 爲 2 3.2% [步驟 8] Geobacillus thermoglucosidasius Q-6 株的腈 水解酶α亞單位及yS亞單位及下游基因ORF3的表現質體 上之再構築 將pET-28a ( + )—冷α質體以限制酶Hindlll分解 並進行脫磷氧化反應,藉由酚氯仿萃取,而進行脫磷酸化 處理。此消化產物提供於1重量%瓊脂糖膠電泳,依據常 法萃取約6.1kb的DNA片段。該DNA片段中,係含有 pET 載體及位於 Geobacillus thermoglucosidasius Q-6 株之 腈水解酶/3亞單位及亞單位的第60個胺基酸之Hindlll 限制酶部位爲止者。 其次,將pUC118-Q6Hin2.3質體以限制酶Hindlll分 解後提供於1重量瓊脂糖膠電泳,萃取出約2.3kb的插入 DNA。該插入片段先與萃取出的片段進行連接後,轉形大 腸桿菌JM109’以卡那黴素選擇出之轉形體選擇出含有插 -55 - (52) 1327596 入DNA的質體。插入方向以PCR確認,而取得在PET-28a ( + )載體上,含有 Geobacillus thermoglucosidasius Q-6株的腈水解酶α亞單位及冷亞單位及下游基因0RF3 與更下游區域之質體。以下,茲將如此完成的質體稱爲 pET-28a ( + ) — β a \ 2。 實施例7:使用腈水解酶基因啓動子的Q6菌株之腈Pseudonocardia thermophila) JCM3095 strain has a P16 of 23.2% [Step 8] Geobacillus thermoglucosidasius Q-6 strain nitrilase α subunit and yS subunit and downstream gene ORF3 expression plastid remodeling pET-28a (+ - The cold alpha plastid is decomposed by the restriction enzyme Hindlll and subjected to dephosphorization oxidation reaction, and dephosphorylated by extraction with phenol chloroform. This digested product was subjected to electrophoresis on a 1% by weight agarose gel, and a DNA fragment of about 6.1 kb was extracted according to a usual method. The DNA fragment contains the pET vector and the Hindlll restriction enzyme site of the 60th amino acid of the nitrilase/3 subunit and subunit of Geobacillus thermoglucosidasius Q-6 strain. Next, the pUC118-Q6Hin2.3 plastid was decomposed with the restriction enzyme Hindlll, and then subjected to electrophoresis on a 1 weight agarose gel to extract an insert DNA of about 2.3 kb. After the insert was first ligated to the extracted fragment, the E. coli JM109' was selected from the transformant selected by kanamycin to select a plastid containing the insert-55-(52) 1327596 into the DNA. The direction of insertion was confirmed by PCR, and the nitrilase α subunit and the cold subunit of the Geobacillus thermoglucosidasius Q-6 strain and the plastid of the downstream gene 0RF3 and the downstream region were obtained on the PET-28a (+) vector. Hereinafter, the plastid thus completed is referred to as pET-28a ( + ) — β a \ 2 . Example 7: Nitrile of Q6 strain using nitrilase gene promoter
水解酶基因在玫瑰色紅球菌Rhodococcus rhodochrous M33 菌株上之表現 [步驟1]M33菌株的腈水解酶基因區域之選殖 爲使Q6菌株之腈水解酶在M3 3菌株中表現起見,選 殖M3 3菌株之腈水解酶基因區域。The performance of the hydrolase gene on the rhodococcus rhodochrous M33 strain [Step 1] The nitrilase gene region of the M33 strain was selected to make the nitrilase of the Q6 strain appear in the M3 3 strain, and the M3 was selected. The nitrilase gene region of the 3 strain.
(1) 由M33菌株萃取染色體DNA 將玫瑰色紅球菌 Rhodococcus rhodochrous M33菌株 培養於YMPD培養基(葡萄糖1.0重量%、聚蛋白腺0.5 重量%、酵母菌萃取物0.3重量%、麥芽萃取物0.3重量% 、pH 7.2)中,由回收之菌體中,使用 QIAGEN公司之 Genomic-tip System ( 500/G)套組以萃取染色體 DNA。 (2) M33菌株之Lamda噬菌體資料庫 將玫瑰色紅球菌 Rhodococcus rhodochrous M33菌株 之染色體DNA以限制酵素Sau3 A 1部分分解之後,提供於 0.7重量%瓊脂糖凝膠電泳中,由瓊脂糖凝膠中切下含有 約20kb之DN A片斷的部份,進行萃取及純化。將該染色 體DNA使用DNA結合套組Ver.l(寶酒造公司製),與 -56 - (53) 1327596(1) Extraction of chromosomal DNA from M33 strain Rhodococcus rhodochrous M33 strain was cultured in YMPD medium (glucose 1.0% by weight, polyprotein gland 0.5% by weight, yeast extract 0.3% by weight, malt extract 0.3% by weight) In pH 7.2), QIAGEN's Genomic-tip System (500/G) kit was used to extract chromosomal DNA from the recovered cells. (2) Lamda phage database of M33 strain The chromosomal DNA of Rhodococcus rhodochrous M33 strain was decomposed with restriction enzyme Sau3 A 1 and then provided in 0.7% by weight agarose gel electrophoresis, from agarose gel. The fraction containing about 20 kb of the DN A fragment was excised and extracted and purified. The DNA of the chromosomal DNA was used in a DNA-binding kit Ver.l (manufactured by Takara Shuzo Co., Ltd.), and -56 - (53) 1327596
Lamda DASH II/BamHI Vector Kits ( S tratagene 公司製 )中之載體DN A結合,根據同套組之手冊,而製作黏接 質體資料庫。對於這些染色體DNA之Lamda噬菌體資料 庫’使用以下所調製之螢光標誌DIG探針,進行斑點雜交 (3 )螢光標誌DIG探針之作成The carrier DN A in Lamda DASH II/BamHI Vector Kits (manufactured by S. tratagene) was combined, and a plastid database was prepared according to the manual of the same set. The Lamda phage library for these chromosomal DNAs was subjected to dot blot hybridization using the following fluorescent marker DIG probe (3) fluorescent marker DIG probe preparation
使用序列表的序列號碼32所記載之引子NH5及序列 表的序列號碼33所記載之引子NH3,藉由玫瑰色紅球菌 Rhodococcus rhodochrous Μ 3 3 菌株的染色體 DNA,將腈 水解酶基因之約530bp的DNA以PCR反應增幅後,由羅 氏公司製作的DIG-DNA標識套組作成螢光標識探針。製 造方法爲依據羅氏公司的DIG手冊。 (4) 藉由斑點南方雜交取得目的克隆 其次,根據該DIG手冊,進行斑點雜交。首先,將出 現之約1000個斑點複印於膜濾網上,使用上述所調整之 螢光標誌DIG探針,取得3個顯示正訊號之噬菌體斑點。 (5) 含有腈水解酶基因上流之正型克隆之解析 將各個斑點分離、純化後,使用 Wizard Lamda Prep (Promeg a公司製)調整噬菌體DNA。所製得之3個噬菌 體DN A以各種限制酵素切斷後,選擇包含腈水解酶基因 之上流部份最長的λ 311。 [步驟2]腈水解酶表現載體之構築 (1) M33KpnISacI/pGEM3zf 之製作 -57- (54) 1327596Using the primer NH5 described in SEQ ID NO: 32 of the Sequence Listing and the primer NH3 described in SEQ ID NO: 33 of the Sequence Listing, the nitrilase gene is about 530 bp by the chromosomal DNA of the Rhodococcus rhodochrous Μ 3 3 strain of Rhodococcus rhodochrousus. After the DNA was amplified by the PCR reaction, a DIG-DNA marker set made by Roche was used to prepare a fluorescent labeling probe. The manufacturing method is based on Roche's DIG manual. (4) Target clones were obtained by spotted southern hybridization. Next, dot blot hybridization was performed according to the DIG manual. First, about 1000 spots appearing were copied onto the membrane screen, and three phage spots showing positive signals were obtained using the above-mentioned adjusted fluorescent marker DIG probe. (5) Analysis of positive clones containing up-stream of nitrilase gene After separating and purifying each spot, phage DNA was adjusted using Wizard Lamda Prep (Promeg a). After the three phage DN A produced were cleaved with various restriction enzymes, the longest λ 311 containing the upper part of the nitrilase gene was selected. [Step 2] Construction of nitrilase expression vector (1) Production of M33KpnISacI/pGEM3zf -57- (54) 1327596
爲將M3 3菌株之腈水解酶基因及其週邊區域再選殖至 質體載體上,藉由以ΚρηΙ及SacI將;I 3 1 1切斷,以瓊脂 糖電泳而回收約5.4Kbp片段,將pGEM3zf( + )( Promega公司製)以ΚρηΙ及S acl切斷後,二者進行混合 ’再以 T4 DNA接合酶連接。該質體被命名爲 M33KpnISacI/pGEM3zf,定義該插入片段之全鹼基序列, 其結果如序列表之序列號碼4所示。再者,其限制酵素地 圖及基因構成則如圖2所記載者。 (2) KSNH-pGEM3z 之製作 在M33KpnISacI/pGEM3zf上殘留M33菌株之腈水解 酶基因的啓動子及終結子,並依據下列順序製作KSNH-pGEM3z載體,以便在其載體間插入Ndel、Bglll ' Clal位 置而使表現基因得以插入。使用 M33KpnISacI/pGEM3zf 對IN V 1 0 1菌株進行轉形,得到未經dam甲基化之質體, 再以Clal切斷後另以PstI進行部分分解,扣除包含腈水 解酶構造基因之Pstl-Clal片段的6545bp片段,另以瓊脂 糖電泳後回收。另一方面,以 M33KpnISacI/pGEM3zf爲 鑄型,使用序列表之序列號碼26所記載的引子M33-F05 與序列號碼27所記載的引子M33-R18進行PCR增幅, 707bp之片段再以瓊脂糖電泳後回收。M33-R18在M33菌 株的腈水解酶A亞單位蛋白質之轉譯起始點上,係將限制 酵素Ndel、Bglll、Clal位置依序並排而設計者。將此 PCR產物以PstI及Clal切斷後,再次以瓊脂糖電泳後回 收400bp之片段,並將其與上述6545bp之片段混合,以 -58- (55) 1327596 T4 DNA接合酶連接而製得KSNH-pGEM3z。 (3) M33KSNH-pHSG298 之製作 爲由KSNH-pGEM3z將質體取代爲pHSG298 (寶酒造 公司製)起見,依據下述要領製作KSNH-pHSG298。將 KSNH-pGEM3z以ΚρηΙ及SacI切斷,3774bp之片段再以 瓊脂糖電泳後回收,另將PHSG298以ΚρηΙ及SacI切斷後 ,二者以T4 DNA接合酶連接而製得約6.44kb之質體In order to re-select the nitrilase gene of M3 3 strain and its peripheral region to the plastid vector, the 3-1Kbp fragment was recovered by agarose electrophoresis by cleavage of 3ρηΙ and SacI; I 3 1 1 , pGEM3zf (+) (manufactured by Promega) was cleaved with ΚρηΙ and Sacl, and then mixed, and then ligated with T4 DNA ligase. This plastid was named M33KpnISacI/pGEM3zf, and the entire base sequence of the insert was defined, and the result is shown in SEQ ID NO: 4 in the Sequence Listing. Further, the restriction enzyme map and the gene composition are as shown in Fig. 2 . (2) Preparation of KSNH-pGEM3z The promoter and terminator of the nitrilase gene of M33 strain remained on M33KpnISacI/pGEM3zf, and the KSNH-pGEM3z vector was prepared according to the following procedure to insert Ndel and Bglll 'Clal positions between the vectors. And the expression gene can be inserted. The IN V 1 0 1 strain was transformed with M33KpnISacI/pGEM3zf to obtain a plastid that was not methylated by dam, and then cleaved with Clal and then partially decomposed with PstI, and the Pstl-Clal fragment containing the nitrilase construct gene was subtracted. The 6545 bp fragment was recovered by electrophoresis on agarose. On the other hand, using M33KpnISacI/pGEM3zf as a mold, PCR amplification was carried out using the primer M33-F05 described in SEQ ID NO: 26 of the Sequence Listing and the primer M33-R18 described in SEQ ID NO: 27, and the fragment of 707 bp was subjected to agarose electrophoresis. Recycling. M33-R18 is designed to limit the positions of enzymes Ndel, Bglll and Clal in the order of translation of the nitrilase A subunit protein of M33 strain. The PCR product was cut with PstI and Clal, and then subjected to agarose electrophoresis to recover a 400 bp fragment, which was mixed with the above-mentioned 6545 bp fragment, and ligated with -58-(55) 1327596 T4 DNA ligase to prepare KSNH- pGEM3z. (3) Preparation of M33KSNH-pHSG298 KSNH-pHSG298 was prepared according to the following method in order to replace the plastid with pHS298 (manufactured by Takara Shuzo Co., Ltd.) by KSNH-pGEM3z. The KSNH-pGEM3z was cut with ΚρηΙ and SacI, and the 3774 bp fragment was recovered by agarose electrophoresis. After the PHSG298 was cleaved with ΚρηΙ and SacI, the two were ligated with T4 DNA ligase to prepare a plastid of about 6.44 kb.
M33KSNH-pHSG298。 (4) Geobacillus thermoglucosidasius Q-6 株的腈水 解酶/3 、α亞單位及下游基因 ORF3對於 M33KSNH_ PHSG298之導入 將序列表之序列號礁28所記載的alpha-maeFl及序 列表之序列號碼29所記載的orfl-atoRl作爲引子,以實 施例6所製作之pET-28a ( + ) -;Sal2作爲鑄型DNA, 增幅含有 Geobacillus thermoglucosidasius Q-6 株的睛水 解酶冷' α亞單位及其下游基因0RF3之約1.5kb片段。 確認無因增幅而發生之錯誤後,在yS亞單位的轉譯起始密 碼上所設計之Ndel限制酵素部位及ORF3基因之轉譯終 止密碼子的後方直接以限制酶Bg III分解,回收約1.5 kb 之DNA片段。另一方面,將約6.44kb之質體M33KSNH-PHSG298以限制酵素Ndel分解後再以Bglll分解,提供 於瓊脂糖電泳,並回收該DNA片段。將該約6.44kb之質 體M33KSNH-PHSG298的載體區域,以及約1.5kb之衍生 自Q-6株的腈水解酶;8、α亞單位及其下游基因〇rF3部 -59- (56) 1327596 分之插入區域進行連接,而製作約7.94kb之M33KSNH-pHSG298- Q6;S a orf3 質體。M33KSNH-pHSG298. (4) Introduction of the nitrilase/3, α subunit and downstream gene ORF3 of Geobacillus thermoglucosidasius Q-6 strain to M33KSNH_PHSG298 The alpha-maeF1 and sequence number 29 of the sequence listing are shown in the sequence number reef 28 of the sequence listing. The described orfl-atoRl was used as the primer, and pET-28a ( + ) -; Sal2 produced in Example 6 was used as the cast DNA, and the eyesight hydrolase cold 'α subunit and its downstream gene of Geobacillus thermoglucosidasius Q-6 strain were amplified. Approximately 1.5 kb fragment of 0RF3. After confirming that there is no error due to the increase, the Ndel restriction enzyme site designed on the translation start codon of the yS subunit and the translation stop codon of the ORF3 gene are directly decomposed by the restriction enzyme Bg III, and about 1.5 kb is recovered. DNA fragment. On the other hand, the plastid M33KSNH-PHSG298 of about 6.44 kb was decomposed by the restriction enzyme Ndel and then decomposed by Bglll to provide agarose electrophoresis, and the DNA fragment was recovered. The carrier region of the plastid M33KSNH-PHSG298 of about 6.44 kb, and the nitrilase derived from the Q-6 strain of about 1.5 kb; 8, the alpha subunit and its downstream gene 〇rF3 -59-(56) 1327596 The insertion region was connected to make a M7KSNH-pHSG298-Q6; Sa orf3 plastid of about 7.94 kb.
該M33KSNH-pHSG298- Q6冷a orf3質體,係由載體 部分約2.64kb,插入部分中M33的腈水解酶啓動子區域 約3.8kb以及Q-6株的腈水解酶α、石亞單位及其下游基 因0RF3約1.5kb,共計約5.3kb所構成者。其結果,在 M33株的腈水解酶/3亞單位之轉譯起始密碼ATG部分, 取代成Q-6株的腈水解酶/3亞單位之轉譯起始位置,使用 M33株的腈水解酶啓動子構築成Q-6株的腈水解酶及下游 基因ORF3所表現之基因單位。 (5)大腸菌與紅球菌屬間之穿梭載體pRE_7上的腈 水解酶表現單位·之構築 將上述所構築之表現單位,根據下述要領導入具有卡 那黴素耐性之約5.9kb的大腸菌及紅球菌屬間用之穿梭載 體pRE-7上。 再者 ’ pRE-7 係以 Zheng 等之方法(Plasmid 38 180-187,1997 ),而製成 pBluescript(Stratagne 公司製)、 pACYC177 ( New England Biolabs 公司製)、及 p〇TS。 此係與 TAKAI 等人之文獻(Infection and Imunity, Dec. 2000,p6848-6847)所記載之pl03相同,且與同文獻中之 p33701幾乎完全相同,特別是用於pRE_7之製作上的部 分係兀全相问’而p33701可由紅球菌(Rhodococcus equi )ATCC33701株加以分離。 首先,將在序列表的序列號碼30上的Ad5F- -60- (57) 1327596The M33KSNH-pHSG298-Q6 cold a orf3 plastid is about 2.64 kb from the vector portion, and the nitrilase promoter region of M33 in the inserted portion is about 3.8 kb, and the nitrilase α and the stone subunit of the Q-6 strain and The downstream gene 0RF3 is about 1.5 kb, and is composed of a total of about 5.3 kb. As a result, the translation start code ATG portion of the nitrilase/3 subunit of the M33 strain was substituted with the translation start position of the nitrilase/3 subunit of the Q-6 strain, and the nitrilase of the M33 strain was used to initiate the translation. The subunit is constructed into a gene unit represented by the nitrilase of the Q-6 strain and the downstream gene ORF3. (5) The nitrilase expression unit on the shuttle vector pRE_7 between Escherichia coli and Rhodococcus is constructed. The above-mentioned performance unit is designed to lead to approximately 5.9 kb of coliform and red with kanamycin resistance. The shuttle vector pRE-7 is used between the genus Cocci. Further, 'pRE-7 was prepared by the method of Zheng et al. (Plasmid 38 180-187, 1997) to prepare pBluescript (manufactured by Stratagne Co., Ltd.), pACYC177 (manufactured by New England Biolabs Co., Ltd.), and p〇TS. This is the same as pl03 described in TAKAI et al. (Infection and Imunity, Dec. 2000, p6848-6847), and is almost identical to p33701 in the same literature, especially for the production of pRE_7. The whole phase is asked, and p33701 can be isolated from the Rhodococcus equi ATCC33701 strain. First, the Ad5F--60- (57) 1327596 will be on the serial number 30 of the sequence listing.
SacKpnNotl ( 5,-pCCGGTACCGC-3 ’)及在序列表的序列 號碼 31 上的 Ad5R-SacKpnNotI ( 5’-pGGCCGCGGTACCGGAGCT-3,) (p 表示 5’末端有磷酸化 者)之二種單股寡核苷酸加以煅燒,目的在將限制酵素部 位SacI改變成Notl部位而製作調整子Ad5-SacKpnNotI。SacKpnNotl (5,-pCCGGTACCGC-3 ') and Ad5R-SacKpnNotI (5'-pGGCCGCGGTACCGGAGCT-3,) on the sequence number 31 of the sequence listing (p indicates phosphorylation at the 5' end) The glycoside was calcined for the purpose of changing the restriction site SacI to the Notl site to prepare the adaptor Ad5-SacKpnNotI.
將上述所構築之約7.94kb之M33KSNH-PHSG2.98- Q6 召a orf3質體以SacI、ΚρηΙ分解,切下約5.3kb之插入部 分,萃取該DNA片段。將調整子Ad5-SacKpnNotI連接至 此SacI限制酵素部位上。利用穿梭載體pRE-7之多選殖 部位,以Kpnl、Notl分解,提供於瓊脂糖凝膠電泳中, 而取得約5.9kb之載體部分的DNA片段。以限制酵素部位 Notl、Kpnl將載體與插入部分連接,將大腸菌轉形,並在 加有卡納黴素之LB培養基中選擇轉形體。 其結果,取得在穿梭載體pRE-7 ( 5.9kb )中導入有 M33株之腈水解酶啓動子區域(3.8kb)及Q-6株的腈水 解酶/3 、α亞單位及其下游基因 orf3 ( 1.5kb )之約 11.2kb 的 pRE-7-M33pro- Q6 β a orf3 質體。 [步驟 3] 使用 gRE-7-M33pro- Q6冷a orf3質體之 M33株的轉形 / 在含有l〇〇ml之LB培養液(0.5重量% Bac to酵母萃 取物 ' 1 重量 %Bacto 胰腺、0.5 重量 %NaCl (pH 7.5 )) 的5 00ml容積三角錐瓶中,接種一白金耳之玫瑰色紅球菌 Rhodococcus rhodochrous M33 菌株,在 30°C 下培養 17 小 -61 - (58) 1327596 時後,4°C下以l〇,〇〇〇xg離心分離15分鐘後集菌。將該 菌體以冰冷之蒸餾水離心分離(4°c下以10,000xg離心分 離15分鐘)二次加以洗淨,使用經過濾器滅菌之10重量 %的甘油,調製成波長600 nm下濁度40之懸浮液。將該 甘油懸浮液50/M與懸浮於1//1水之2yg的pRE-7-M3 3pro- Q6卢a orf3加以混合,並迅速地倒入 1 mm寬之 細胞電擊用的電極管中,並在 1.5KV、25 μ F、800 Ω之條 件下,使用 ΒΤΧ公司製之ECM630將基因導入。其後’ 在冰浴中保持10分鐘,將全量加入1ml的LB培養液中再 於3 0°C下培養4小時,於含100 // g/ml的卡納黴素之LB 洋菜培養基上,畫線後以30°C培養3天至5天’選擇出現 有卡納黴素耐性出現之菌落,而得到玫瑰色紅球菌 Rhodococcus.rhodochrous M33 菌株。 [步驟4] M33菌株轉形體之培養The approximately 7.94 kb of M33KSNH-PHSG2.98-Q6 constructed as described above was decomposed into a orf3 plastids by SacI and ΚρηΙ, and an insert portion of about 5.3 kb was excised, and the DNA fragment was extracted. The adaptor Ad5-SacKpnNotI was ligated to this SacI restriction enzyme site. Using a multi-selection site of the shuttle vector pRE-7, it was decomposed with Kpnl and Notl and provided in agarose gel electrophoresis to obtain a DNA fragment of a vector portion of about 5.9 kb. The vector was ligated to the insert portion by restriction enzyme sites Notl, Kpnl, coliform was transformed, and the transformant was selected in LB medium supplemented with kanamycin. As a result, a nitrilase promoter region (3.8 kb) into which the M33 strain was introduced into the shuttle vector pRE-7 (5.9 kb) and a nitrilase/3, α subunit and its downstream gene orf3 of the Q-6 strain were obtained. (1.5 kb) of the 11.2 kb pRE-7-M33pro-Q6 β a orf3 plastid. [Step 3] Transformation of M33 strain using gRE-7-M33pro-Q6 cold a orf3 plastid / LB medium containing l〇〇ml (0.5% by weight Bac to yeast extract ' 1% by weight Bacto pancreas, 0.5% by weight of NaCl (pH 7.5)) in a 500 ml volumetric flask, inoculated with a Rhododendron Rhodocarpus Rhodochrous M33 strain, and cultured at 30 ° C for 17 small -61 - (58) 1327596, The cells were collected by centrifugation at 1 °C for 15 minutes at 4 °C. The cells were washed twice with ice-cold distilled water (centrifuged at 10,000 x g for 15 minutes at 4 ° C), and washed with 10% by weight of glycerol sterilized by a filter to prepare a turbidity of 40 at a wavelength of 600 nm. suspension. The glycerin suspension 50/M was mixed with 2 yg of pRE-7-M3 3pro-Q6 lux a orf3 suspended in 1//1 water, and rapidly poured into an electrode tube for a 1 mm wide cell shock. The gene was introduced using ECM630 manufactured by Azbil Corporation under the conditions of 1.5 KV, 25 μF, and 800 Ω. Thereafter, it was kept in an ice bath for 10 minutes, and the whole amount was added to 1 ml of LB medium and cultured at 30 ° C for 4 hours on LB acacia medium containing 100 // g/ml of kanamycin. After the line was drawn, the culture was carried out at 30 ° C for 3 days to 5 days. 'The colony with the presence of kanamycin resistance was selected to obtain the Rhodococcus rhodochrous M33 strain. [Step 4] Culture of M33 strain transform
在含有100ml之生產用培養基(KH2PO40.5g/L、 K2HPO4 0.4g/L、CoC126H20 0.02g/L、FES047H20 0·003Contains 100ml of production medium (KH2PO40.5g/L, K2HPO4 0.4g/L, CoC126H20 0.02g/L, FES047H20 0·003
g/L、EDTA-2Na 0.006g/L、NaCl 0 · 0 1 g/L、C aC 12 2 Η 2 O 0.01g/L、葡萄糖 20g/L、MgS047H20 1.2g/L、尿素 7.5g/L 、卡納黴素lOmg/L)的500ml容積三角錐瓶中,接種一 白金耳之玫塊色紅球菌Rhodococcus rhodochrous M33菌 株的轉形體,在30°C下培養2天。將由此所得到之培養液 90ml,移植於含有3l生產用培養基之5L容積的發酵槽中 ,以Ph 7.2、攪拌速度5 00rpm,在30°C下培養48小時。 -62- (59) (59)1327596 將培養液以25°C、l〇,〇〇〇xg 15分鐘,離心分離後集菌。 將同菌體以25ml水’ 25°C下離心分離10,000xg 15分鐘’ 並進行二次加以洗淨,而得到生產反應用之菌體。 [步驟5]使用M33菌株轉形體之丙烯醯胺生產反應 將含有上述步驟4培養所得到之玫瑰色紅球菌 Rhodococcus rhodochrous M33 菌株轉形體 0.9 克(菌體乾 燥重量之相當量)的蒸餾水800ml倒入1.5L反應器中, 在20 °C至25 °C下繼續調整容器內溫度並攪拌。然後,將 液體之丙烯腈滴入其中並且其濃度不超過2%,適當地取 出樣品,稀釋離心分離後之上清液,並以高速液體色層分 析法測定丙烯醯胺之濃度。其結果,具有Q-6株的腈水解 酶基因之玫瑰色紅球菌Rhodococcus rhodochrous M33菌 株轉形體,其累積了 52% (重量/溶液)之丙烯醯胺。 比較例1 比較例中’除不於培養基中添加卡納黴素外,使用與 上述之步驟4同樣的方法’培養母株之玫瑰色紅球菌 Rhodococcus rhodochrous M33菌株,使用獲自該培養液之 菌體,以與步驟5相同之方法進行丙烯醯胺生產反應時, 確認上述之M33轉形體中,藉由導入Q6菌株由來之腈水 解酶基因’丙烯醯胺累積量有明顯地累積。將該實施例與 比較例之比較結果,表示如圖3所示,且圖3之結果亦示 於表3中。 -63- (60) 1327596 (60)g/L, EDTA-2Na 0.006g/L, NaCl 0 · 0 1 g/L, C aC 12 2 Η 2 O 0.01g/L, glucose 20g/L, MgS047H20 1.2g/L, urea 7.5g/L, In a 500 ml volumetric flask of kanamycin lOmg/L), a transformant of Rhodococcus rhodochrous M33 strain of Rhododendron rhodochrous M33 was inoculated and cultured at 30 ° C for 2 days. 90 ml of the culture solution thus obtained was transplanted into a 5 L volume fermentation tank containing 3 l of a production medium, and cultured at 30 ° C for 48 hours at pH 7.2 and a stirring speed of 500 rpm. -62- (59) (59) 1327596 The culture solution was centrifuged at 25 ° C, 1 Torr, 〇〇〇 xg for 15 minutes, and collected. The same cells were centrifuged at 1,500 x g for 15 minutes in 25 ml of water at 25 ° C and washed twice to obtain a cell for production reaction. [Step 5] Using a propylene amide production reaction of the M33 strain transforming body, 800 ml of distilled water containing 0.9 g of the rhodococcus Rhodococcus rhodochrous M33 strain obtained by the above step 4 culture (the equivalent amount of the dry weight of the cells) is poured. In a 1.5 L reactor, continue to adjust the temperature inside the vessel at 20 ° C to 25 ° C and stir. Then, the liquid acrylonitrile was dropped thereinto and the concentration thereof was not more than 2%, the sample was appropriately taken out, the supernatant after centrifugation was diluted, and the concentration of acrylamide was measured by a high-speed liquid chromatography method. As a result, a Rhodococcus rhodochrous M33 strain having a nitrile hydrolase gene of the Q-6 strain accumulated 52% (weight/solution) of acrylamide. Comparative Example 1 In the comparative example, the parent strain Rhodococcus rhodochrous M33 was cultured in the same manner as in the above step 4 except that kanamycin was not added to the medium, and the strain obtained from the culture solution was used. When the acrylamide production reaction was carried out in the same manner as in the step 5, it was confirmed that the cumulative amount of the nitrilase gene 'acrylamide amide accumulated from the Q6 strain was significantly accumulated in the above M33 transformant. The results of comparison between this example and the comparative example are shown in Fig. 3, and the results of Fig. 3 are also shown in Table 3. -63- (60) 1327596 (60)
表7 反應時間 (Hrs) 玫瑰色紅球菌Rhodococcus rhodochrous M33 菌株 經轉型之 Rhodococcus rhodochrous M33菌株 0 0.0 0.0 1 14.2 19.4 2 25.8 32.6 3 34.0 39.2 4 38.5 43.0 5 40.8 45.7 6 41.9 47.8 7 42.9 49.6 8 43.2 50.6 9 43.2 51.3 10 43.2 51.8Table 7 Reaction time (Hrs) Rhodococcus rhodochrous M33 strain Rhodococcus rhodochrous M33 strain 0 0.0 0.0 1 14.2 19.4 2 25.8 32.6 3 34.0 39.2 4 38.5 43.0 5 40.8 45.7 6 41.9 47.8 7 42.9 49.6 8 43.2 50.6 9 43.2 51.3 10 43.2 51.8
比較例2:藉由負型•聚丙嫌醯胺凝膠電泳進行各菌 體內腈水解酶量之確認 將比較例1所得到之母株M3 3菌株培養液及上述步驟 4所得到之M3 3菌株的轉形體培養液,各自以8,000g、10 分鐘之離心分離進行集菌,所得到之濕菌體80mg於2ml 之5 OmM磷酸鈉緩衝液(pH 7)中再懸浮。在冷卻下使用 超音波破碎機使菌體破碎,於該菌體破碎液中添加甘油至 10% (重量/液量),將各樣品藉由使用10%凝膠之負型· -64- (61) 1327596 聚丙烯醯胺凝膠電泳進行解析。電泳後,使用考麻薩亮藍 7 (Coomassie Brilliant Blue 7)進行蛋白質染色,脫色後 之結果,在M33菌株之轉形體中,除在母株M33菌株之 _ 腈水解酶同位置上之色帶出現外,在更低電泳度位置上亦 * ' 有與Q6菌株之純化腈水解酶同位置之色帶存在,而確認 ,* 其係各可達成占有細胞內全蛋白質30 %以上之種類稀少且 ·* 高表現量者。與由轉形體之樣品所得到的Q6菌株之純化 腈水解酶相同位置的色帶,使用轉漬裝置(BIO-RAD公司 )轉印於PVDF膜(MILLIPORE公司製)上,進行CBB 染色,再將目的色帶所吸附之部分由PVDF膜上切下。其 次,使用全自動蛋白質—次構造分析裝置PPSQ-23A (島 津製作所),來解讀蛋白質之N末端胺基酸序列。其結果 ,檢測出序列表之序列號碼23所記載之酸序列與序列表 之序列號碼24所記載之序列爲混合者,而判斷該轉形體 係無疑地以明顯量生產來自 Q6菌株之腈水解酶。另一方 φ 面,在母株之M33菌株的樣品中,當然地,並無來自Q6 ' 菌株之腈水解酶相當位置上的色帶。 產業上可利用性 本發明的微生物係即使於高溫、及高腈化合物濃度或 高醯胺化合物濃度下反應時’亦可被利用在將腈化合物轉 變爲所對應的醯胺化合物之領域上。 【圖式簡單說明】 •65- (62) (62)1327596 圖 1 表示 Geobacillus thermoglucosidasius Q-6 株的 腈水解酶Θ亞單位、α亞單位及下游基因群之基因構成及 限制酵素圖。其中亦表示菌落雜交所取得之片段(Hin2.3 )及,以紅球菌屬細菌表現時所導入之片段(yS αΐ)的 位置。 圖2表示玫瑰色紅球菌Rhodococcus rhodochrous Μ33 菌株腈水解酶;S亞單位、α亞單位及下游基因群之基因構 成及其週邊區域之限制酵素圖。限制酵素地圖之兩末端係 相當於由以斑點雜交所得到之λ 3 1 1的DNΑ用於再選殖之 ΚρηΙ及SacI。粗線部分係使用 M33KSNH-pHSG298之部 分,粗線斷掉部分則表示係插入子所插入者。 圖3表不使用玫瑰色紅球菌Rhodococcus rhodochrous M3 3菌株及其轉形體進行丙烯醯胺生產反應之結果圖。 -66-Comparative Example 2: Confirmation of the amount of nitrilase in each of the bacteria by negative-type polyacrylamide gel electrophoresis. The culture solution of the parent strain M3 3 obtained in Comparative Example 1 and the M3 3 strain obtained in the above step 4 The transformant culture solution was collected by centrifugation at 8,000 g for 10 minutes, and 80 mg of the obtained wet cells were resuspended in 2 ml of 5 OmM sodium phosphate buffer (pH 7). The bacteria were disrupted by using an ultrasonic breaker under cooling, and glycerin was added to the bacterial cell disrupted solution to 10% (weight/liquid amount), and each sample was subjected to a negative type using a 10% gel. 61) 1327596 Polyacrylamide gel electrophoresis for resolution. After electrophoresis, protein staining was performed using Coomassie Brilliant Blue 7 as a result of decolorization, and in the transform of M33 strain, except for the ribbon at the same position as the nitril hydrolase of the parent strain M33. In addition, at the lower electrophoretic position, there is also a band of the same position as the purified nitrilase of the Q6 strain, and it is confirmed that * each of them can achieve a rare amount of more than 30% of the total protein in the cell. ·* High performance. The ribbon at the same position as the purified nitrilase of the Q6 strain obtained from the sample of the transforming body was transferred onto a PVDF membrane (manufactured by MILLIPORE Co., Ltd.) using a transfer device (BIO-RAD) to perform CBB staining, and then The portion of the target ribbon that is adsorbed is cut from the PVDF film. Next, the fully automated protein-substructure analysis device PPSQ-23A (Shimadzu Corporation) was used to interpret the N-terminal amino acid sequence of the protein. As a result, it was found that the acid sequence described in the sequence number 23 of the sequence listing and the sequence described in the sequence number 24 of the sequence listing were mixed, and it was judged that the transformation system undoubtedly produced the nitrilase from the Q6 strain in a significant amount. . On the other side of the φ plane, in the sample of the M33 strain of the parent strain, of course, there is no ribbon from the nitrilase equivalent position of the Q6 ' strain. Industrial Applicability The microorganism of the present invention can be utilized in the field of converting a nitrile compound into a corresponding guanamine compound even when it is reacted at a high temperature and a high nitrile compound concentration or a high guanamine compound concentration. [Simple description of the diagram] • 65- (62) (62) 1327596 Figure 1 shows the genetic makeup and restriction enzyme maps of the nitrilase Θ subunit, α subunit and downstream gene group of Geobacillus thermoglucosidasius Q-6 strain. It also indicates the fragment obtained by colony hybridization (Hin2.3) and the position of the fragment introduced by Rhodococcus bacteria (yS αΐ). Fig. 2 is a diagram showing the restriction enzymes of the gene formation of the S subunit, the α subunit and the downstream gene group and the surrounding region of the Rhodococcus rhodochrous Μ33 strain nitrilase; The two ends of the restriction enzyme map correspond to the DN of the λ 3 1 1 obtained by spot hybridization and used for re-cloning of ΚρηΙ and SacI. The thick line is part of M33KSNH-pHSG298, and the broken part of the thick line indicates the inserter inserted. Fig. 3 is a graph showing the results of a acrylamide production reaction using Rhodococcus rhodochrous M3 3 strain and its transformant. -66-
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