TW201040274A - Rice transgenic event 17053 and methods of use thereof - Google Patents

Rice transgenic event 17053 and methods of use thereof Download PDF

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TW201040274A
TW201040274A TW099109684A TW99109684A TW201040274A TW 201040274 A TW201040274 A TW 201040274A TW 099109684 A TW099109684 A TW 099109684A TW 99109684 A TW99109684 A TW 99109684A TW 201040274 A TW201040274 A TW 201040274A
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TWI527902B (en
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Sophia Yun-Chia Chen
Can Duong
Sio-Wai Hoi
Christopher S Hubmeier
Youlin Qi
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Monsanto Technology Llc
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Abstract

The present invention provides a transgenic rice event 17053 and plants, plant cells, seeds, plant parts, and commodity products derived from event 17053. The present invention also provides polynucleotides specific for event 17053 and plants, plant cells, seeds, plant parts, and commodity products comprising polynucleotides specific for event 17053. The invention also provides methods related to event 17053.

Description

201040274 六、發明說明: 【發明所屬之技術領域】 本發明係關於基因轉殖米品系Π053。包含該品系之植 物顯示出對草甘膦(glyph〇sate)除草劑之耐受性。本發明亦 係關於與品系Π053有關之核酸分子、植物、植物部分、 植物種子、植物細胞、農產品及方法。本發明提供該品系 獨有且結合將基因轉殖DNA插入至稻米植物基因體中而形 成之核苷酸分子。 本申請案主張2009年3月30曰申請之美國臨時申請案第 61/164,899號之權益,該申請案全文以引用的方式併入本 文中。 隨同申請之序列表係以引入的方式併入本文中。 【先前技術】201040274 VI. Description of the Invention: [Technical Field to Which the Invention Is Ascribed] The present invention relates to a genetically modified rice line Π053. Plants containing this line showed tolerance to glyphosate herbicides. The invention also relates to nucleic acid molecules, plants, plant parts, plant seeds, plant cells, agricultural products and methods related to line Π053. The present invention provides nucleotide molecules which are unique to this strain and which are combined with the insertion of gene-transformed DNA into the rice plant genome. This application claims the benefit of U.S. Provisional Application Serial No. 61/164,899, filed on March 30, 2009, which is hereby incorporated by reference. The sequence listings accompanying the application are incorporated herein by reference. [Prior Art]

米為世界上許多地區的重要作物。已對米應用生物技術 方法β求產生具有改良特性之米。該等改良特性中之一者 為除草劑耐受性。除草劑耐受性轉殖基因在植物中之表現 適用於產生具有所需除草劑耐受性特徵之植物的目的。轉 殖基因在植物中之表現可能由於染色質結構(例如異染色 質轉錄調控元件(例如強化子)接近於整合部位之接近度 :文轉造基因染色體位置的影響。為此,冑常必需筛選大 量單株植物轉化品系來識別具有轉殖基因最佳表現且因此 具有特定所需特徵之品系。例如,已在植物中觀測到品系 ^中轉殖基因表現量可存在廣泛變化。在表現之空間或時 間模式中亦可存在差異’例如各種植物組織中相對轉殖基 147377.doc 201040274 因表現量之罢显,甘_ΓΛμ /、其可旎不符合存在於所引入基因構筚# 令之轉錄調控元件所期望之禮十.^ 稱4體 望之极式。為此,可威需要產生數 百至數千個不同基因轉殖品系且在該等品系中筛選呈有所 2轉殖基因表現量及模式之品系用於商業目的。該具有所 *轉殖基因表現量或模式之品系可隨後藉由使用植物育種 方法進行有性雜交而用於將轉殖基因渗入至其他遺傳背景 中。該等雜交子代將具有原始轉化株之轉殖基因表現^ 徵:此舉可用於確保在針對特定地區生長條件而適當調整 之許多不同品種中的穩固基因表現。 【發明内容】 本發明提供包含品系i7053的基因轉殖稻米植物,其顯 不出商業上可接受的對草甘膦除草劑之施用的耐受性,代 表性種子以登記號PTA_9843存放於美國菌種保存中心 (ATCC)。本發明亦提供包含品系17〇53之米的種子、子 代、植物部分、細胞及商品。本發明亦提供與包含品系 17053之米的基因體有關之新穎DNA分子及該等分子之使 用方法。本發明亦提供基因轉殖米品系1 7053之使用方法 及包含該品系之植物及產生耐受草甘膦之米的方法。Rice is an important crop in many parts of the world. The biotechnology method has been applied to rice to produce rice with improved properties. One of these improved properties is herbicide tolerance. The herbicide-tolerant transgenic gene is expressed in plants for the purpose of producing plants having the desired herbicide tolerance characteristics. The expression of the transgenic gene in plants may be due to the close proximity of the chromatin structure (eg, heterochromatin transcriptional regulatory elements (eg, enhancers) close to the integration site: the effect of the chromosomal location of the gene. A large number of individual plant transformation lines are selected to identify lines that have the best performance of the transgenic genes and therefore have the specific desired characteristics. For example, the number of transgenic genes that have been observed in plants can vary widely. There may also be differences in spatial or temporal patterns 'eg relative transgenic groups in various plant tissues 147377.doc 201040274 due to the amount of performance, ΓΛ ΓΛ μ / / 旎 旎 、 、 、 、 、 、 、 、 、 、 、 、 、 、 、 、 The transcriptional regulatory element is expected to be the first tenth of the body. For this reason, Kewei needs to produce hundreds to thousands of different gene-transferred lines and screened for 2 copies in these lines. Lines of gene expression and pattern are used for commercial purposes. The line with the amount or pattern of gene transfer can then be used for sexual hybridization using plant breeding methods. Transgenic genes infiltrate into other genetic backgrounds. These hybrid progeny will have the transcriptional gene expression of the original transformant: this can be used to ensure a robust gene in many different varieties that are appropriately adjusted for growth conditions in a particular region. SUMMARY OF THE INVENTION The present invention provides a genetically-transferred rice plant comprising line i7053 which exhibits a commercially acceptable tolerance to the application of a glyphosate herbicide, the representative seed being deposited under accession number PTA_9843 American Species Preservation Center (ATCC). The present invention also provides seeds, progeny, plant parts, cells, and commercial products comprising lines 17 to 53 meters. The present invention also provides novel DNA related to the genome containing the line 17053. Molecules and methods of using the same. The invention also provides methods of using the genetically modified rice line 1 7053, and plants comprising the lines and methods of producing glyphosate-tolerant rice.

本發明提供與米品系17053有關之DNA分子。該等DNA 分子可包含表示以下或來源於以下之核苷酸序列:米品系 1 7053之轉殖基因插入序列與側接基因體dna之間的接合 序列’及/或側接於所插入之DNA的基因體DNA區域,及/ 或側接於插入位點的經整合之基因轉殖DNA區域,及/或 經整合之基因轉殖表現卡匣區域,及/或該等區域中任一 147377.doc 201040274 者之鄰接序列。本發明亦提供用作鑑定米品系i7053之引 子及探針的DNA分子。亦揭示包含該等分子之稻米植物、 植物細胞、植物部分、商品、子代及種子。 本發明提供用於偵測來源於米品系17053之DNA之存在 的方法、組合物及套組。本發明提供一種偵測品系1 7〇53 之方法’其係藉由使包含DNA之樣本接觸引子組,該引子 組當與米品系17053之基因體DNA用於核酸擴增反應時, 0 產生鑑定米品系17053之擴增DNA;進行核酸擴增反應由 此產生擴增DNA ;且偵測擴增DNA來實現。本發明亦提供 一種偵測品系17053之方法,其係藉由使包含DNA之樣本 接觸探針,該探針當與米品系17〇53之基因體DNa用於雜 父反應日ττ ’與米品系17053之特有DNA分子雜交;進行雜 ^ 交反應;且偵測探針與DNA分子之雜交來實現。亦提供用 於j貞測來源於米品系17 〇 5 3之DN A之存在的包含本發明方 法及組合物之套組。 〇 本發明提供包含品系17053之稻米植物、種子、植物細 胞、子代植物、植物部分或來源於該植物、植物細胞或種 子之商品。本發明亦提供包含具有選自由SEq ID no: i_6 組成之群之核苷酸序列以及其互補序列及片段的Dna分 子,或與SEQ ID NO: ό有至少90%之序列一致性的DNA分 子之稻米植物、種子、植物細胞、子代植物、植物部分或 商品。本發明亦提供包含品系17〇53且包含例如以DNA擴 增方法產生包含SEQ ID NO: 1及/或SEQ ID NO: 2之擴增 DNA分子的DNA分子之稻米植物、種子、植物細胞、子代 147377.doc 201040274 植物、植物部分或來源於該植物或種子的商品。 八本^提供—種控制田間雜草之方法,其係藉由種植包 3品系17053之稻米且隨後施用能夠控制雜草但不傷害包 含品系17053之植物的有效劑量之草甘鱗除草劑來實現°。匕 本發明提供產生耐受草甘膦除草劑之施用之稻米植物 及/或種子时法,其係藉由使包含品約7053或包含_ ID恥·· WSEQ ID N〇: 2之稻米植物與第二稻米植物有性 雜交’由此產生種子,栽種種子產生子代植物,以草甘膦 處理子代植物且選擇耐受草甘膦之子代植物來實現。窄等 方法亦可包括使所選子代植物自交產生複數個子二代植物 且自該等子二代植物令選擇耐受草甘膦之植物。該等方法 亦可包括使所選子代植物與另一種稻米植物有性雜交產生 種子,栽種種子產生子二代植物,以草甘膦處理子二代植 物且選擇耐受草甘膦之子二代植物。本發明提供產生财受 草甘膦除草劑之施用之稻米植物及/或種子的方法,其係 藉由使包含品系17053且包含SEQ ID N〇: 14seq ι〇 n〇: 2之草甘膦耐受植物自交’由此產生種子,栽種種子產生 子代植物,以草甘膦處理子代植物且選擇耐受草甘膦之子 代植物來實現。 本發明之上述及其他態樣將在以下實施方式中變得愈加 清楚。 “ 序列簡單說明 SEQ ID NO: 1--表示米基因體DNA與經整合之表現卡匠 之間之5’接合序列的二十個核苷酸的序列。該核苷酸序列 147377.doc 201040274 對應於SEQ ID NO: 3([C],參見圖1)之位置565至584且對 應於SEQ ID NO: 6之位置565至584。 SEQ ID NO: 2--表示經整合之表現卡匣與米基因體DNA 之間之3'接合序列的二十個核苷酸的序列。該核苷酸序列 對應於SEQ ID NO: 4([D],參見圖1)之位置626至645,且 SEQ ID NO: 2之反向互補序列對應於SEQ ID NO: 6之位置 3707至3726 。 SEQ ID NO: 3 —側接於品系17053之所插入DNA直至X包 括基因轉殖DNA區域之5'序列。SEQ ID NO: 3之核苷酸位 置5 65至584對應於SEQ ID NO: 1之核苷酸位置1至20且SEQ ID NO: 3之核苷酸位置575至584對應於SEQ ID NO: 5之核 苷酸位置1至10。 SEQ ID NO: 4--側接於品系17053之所插入DNA直至且包 括轉殖基因DNA插入區域之3'序列。SEQ ID NO: 4之核苷 酸位置626至645對應於SEQ ID NO: 2之核苷酸位置1至 20,且SEQ ID NO: 4之核苷酸位置636至645之反向互補鏈 對應於SEQ ID NO: 5之核苷酸位置3 133至3142。 SEQ ID NO: 5--賦予草甘膦除草劑耐受性之經整合之表 現卡匣的序列。SEQ ID NO: 5對應於SEQ ID NO: 6之核苷 酸位置575至3716。 SEQ ID NO: 6--表示側接於品系17053之所插入DNA的5' 序列(SEQ ID NO·· 3)、經整合之表現卡匣之序列(SEQ ID NO: 5)及側接於品系17053之所插入DNA的3'序列(SEQ ID NO: 4之反向互補序列)之片段重疊群(contig)的核苷酸序 147377.doc 201040274 列。 SEQ ID NO: 7--用以識別品系17053之引子SQ4194。引 子SQ4194互補於側接於所插入之表現卡匠5’區域、靠近轉 殖基因DNA插入右邊緣的基因體區域。使用引子SQ4194 及SQ4191(SEQ ID NO: 8)之祖合產生的擴增子表明品系 17053之存在。 SEQ ID NO: 8--用以識別品系17053之引子SQ4191。引 子SQ4191互補於靠近轉殖基因插入邊緣的所插入之 表現卡匣5'區域。使用引子SQ4194(SEQ ID NO: 7)及 SQ4191之組合產生的擴增子表明品系17053之存在。 SEQ ID NO: 9--用以識別品系I7053之探針PB1494,其 互補於5,接合序列之片段。探針可與可债測之標記(諸如 6FAMTM)連接。在 TAQMAN®(PE Applied Biosystems, Foster City, CA)檢定中使用諸如SQ4194及SQ4191之引子 與諸如標記6FAMTM之探針PB1494組合的螢光信號的釋 放,鑑定品系17053之存在。 SEQ ID NO: 10--用以識別品系17053之引子SQ1 875 °引 子SQ 1 875互補於靠近轉殖基因DNA插入邊緣的所插入之 表現卡匣3,區域。使用引子SQ1875及SQ3623(SEQ ID NO: 11)之組合產生的擴增子表明品系17〇53之存在。 SEQ ID NO: 11-用以識別品系17〇53之引子即623。引 子SQ3623互補於側接於所插入之表現卡匣3'末端、罪近轉 殖基因DNA插入邊緣的基因體區域。使用引子SQ1875 (SEQ ID NO: 1〇)及SQ3623之組合產生的擴增子表明品系 147377.doc 201040274 17053之存在。 SEQ ID NO: 12--用以識別品系17053之側接基因體DNA 的引子SQ1871。引子SQ1871互補於靠近轉殖基因DNA插 入邊緣的所插入之表現卡匣5'區域。 SEQ ID NO: 13--用以識別品系17053之側接基因體DNA 的引子SQ1869。引子SQ1869互補於靠近轉殖基因DNA插 入邊緣的所插入之表現卡匣5·區域。The present invention provides DNA molecules associated with rice line 17053. The DNA molecules may comprise a nucleotide sequence representing or derived from: a junction sequence between a transgenic insertion sequence of rice line 1 7053 and a flanking gene dna and/or flanked by the inserted DNA The genomic DNA region, and/or the integrated gene-transforming DNA region flanked by the insertion site, and/or the integrated gene-transforming region of the cassette, and/or any of the regions 147377. Doc 201040274 The contiguous sequence of people. The present invention also provides a DNA molecule for use as a primer and probe for identifying rice line i7053. Rice plants, plant cells, plant parts, commodities, progeny and seeds comprising such molecules are also disclosed. The present invention provides methods, compositions and kits for detecting the presence of DNA derived from rice line 17053. The present invention provides a method for detecting a strain of 1 〇53, which is obtained by contacting a sample containing DNA with a primer set which is used for nucleic acid amplification reaction with the gene DNA of rice line 17053. Amplification of DNA of rice line 17053; performing nucleic acid amplification reaction to thereby generate amplified DNA; and detecting amplified DNA to achieve. The present invention also provides a method for detecting a line 17053 by contacting a sample containing DNA with a probe of the gene DNa of the rice line 17〇53 for the heterogeneous reaction day ττ′ and the rice line. 17053 is characterized by hybridization of DNA molecules; performing heterozygous reactions; and detecting hybridization of probes with DNA molecules. Kits comprising the methods and compositions of the present invention for use in detecting the presence of DN A from rice lines 17 〇 5 3 are also provided. 〇 The present invention provides a rice plant, seed, plant cell, progeny plant, plant part, or product derived from the plant, plant cell or seed, comprising line 17053. The present invention also provides a DNA molecule comprising a DNA sequence having a nucleotide sequence selected from the group consisting of SEq ID no: i_6 and complementary sequences and fragments thereof, or a DNA molecule having at least 90% sequence identity to SEQ ID NO: Rice plants, seeds, plant cells, progeny plants, plant parts or commodities. The invention also provides a rice plant, seed, plant cell, subunit comprising a line 17〇53 and comprising, for example, a DNA molecule comprising a DNA molecule comprising the amplified DNA molecule of SEQ ID NO: 1 and/or SEQ ID NO: 2, by DNA amplification. 147377.doc 201040274 A plant, plant part or commodity derived from the plant or seed.八本^ provides a method of controlling weeds in the field by planting the rice of the line 3, line 17053 and subsequently applying a herbicide scale herbicide capable of controlling the weeds without harming the plants containing the line 17053. °. The present invention provides a method for producing a rice plant and/or seed which is resistant to the application of a glyphosate-tolerant herbicide by using a plant containing about 7053 or containing _ID shame WSEQ ID N〇: 2 The second rice plant has sexual crosses' thereby producing seeds, planting the seeds to produce progeny plants, treating the progeny plants with glyphosate and selecting progeny plants resistant to glyphosate. Narrow methods can also include selfing the selected progeny plants to produce a plurality of sub-secondary plants and selecting glyphosate-tolerant plants from the second generation plants. The methods may also include sexually crossing the selected progeny plant with another rice plant to produce seeds, planting the seed to produce the second generation plant, treating the second generation plant with glyphosate and selecting the second generation tolerant to glyphosate. plant. The present invention provides a method of producing a rice plant and/or seed for application of a glyphosate-containing herbicide by glyphosate-resistant strain comprising the strain 17053 and comprising SEQ ID N: 14seq ι〇n〇: Self-crossing by plants 'There are seeds produced, seeded to produce progeny plants, progeny plants treated with glyphosate and progeny plants resistant to glyphosate are selected. The above and other aspects of the invention will become more apparent from the following embodiments. "Sequence of sequence SEQ ID NO: 1-- indicates the sequence of twenty nucleotides of the 5' junction sequence between the rice gene DNA and the integrated expression card maker. The nucleotide sequence 147377.doc 201040274 corresponds At positions 565 to 584 of SEQ ID NO: 3 ([C], see Figure 1) and corresponding to positions 565 to 584 of SEQ ID NO: 6. SEQ ID NO: 2-- indicates integrated performance cassettes and rice a sequence of twenty nucleotides of the 3' junction sequence between the genomic DNA. The nucleotide sequence corresponds to positions 626 to 645 of SEQ ID NO: 4 ([D], see Figure 1), and SEQ ID The reverse complement of NO: 2 corresponds to position 3707 to 3726 of SEQ ID NO: 6. SEQ ID NO: 3 - the inserted DNA flanked by line 17053 until X comprises the 5' sequence of the gene transfer DNA region. ID NO: 3 nucleotide positions 5 65 to 584 correspond to nucleotide positions 1 to 20 of SEQ ID NO: 1 and nucleotide positions 575 to 584 of SEQ ID NO: 3 correspond to SEQ ID NO: 5 Nucleotide position 1 to 10. SEQ ID NO: 4-- The inserted DNA flanking the line 17053 up to and including the 3' sequence of the transgene DNA insertion region. SEQ ID NO: 4 nucleotide position 626 to 645 corresponding At nucleotide positions 1 to 20 of SEQ ID NO: 2, and the reverse complementary strand of nucleotide positions 636 to 645 of SEQ ID NO: 4 corresponds to nucleotide positions 3 133 to 3142 of SEQ ID NO: SEQ ID NO: 5-- The sequence of the integrated expression cassette that confers tolerance to glyphosate herbicide. SEQ ID NO: 5 corresponds to nucleotide positions 575 to 3716 of SEQ ID NO: 6. SEQ ID NO: 6-- indicates the 5' sequence (SEQ ID NO. 3) of the inserted DNA flanked by line 17053, the sequence of the integrated expression cassette (SEQ ID NO: 5), and is flanked by line 17053. The nucleotide sequence of the contig of the 3' sequence of the inserted DNA (reverse complement of SEQ ID NO: 4) is 147377.doc 201040274. SEQ ID NO: 7 - used to identify line 17053 Primer SQ4194. The primer SQ4194 is complementary to the region of the gene region flanked by the inserted 5' region of the display cardiner, near the right edge of the insertion of the transgenic DNA. Using the ancestors of the primers SQ4194 and SQ4191 (SEQ ID NO: 8) The amplicon indicates the presence of line 17053. SEQ ID NO: 8-- is used to identify primer SQ4191 of line 17053. The primer SQ4191 is complementary to the inserted 5' region of the expression cassette near the insertion edge of the transgene. The amplicon generated using the combination of primer SQ4194 (SEQ ID NO: 7) and SQ4191 indicates the presence of line 17053. SEQ ID NO: 9 - probe PB1494 to identify line I7053, which is complementary to 5, a fragment of the ligating sequence. The probe can be connected to a decodable marker such as 6FAMTM. The release of a fluorescent signal in combination with a primer such as SQ4194 and SQ4191 and a probe PB1494 such as the labeled 6FAMTM was used in the TAQMAN® (PE Applied Biosystems, Foster City, CA) assay to identify the presence of line 17053. SEQ ID NO: 10--Indicator SQ1 875 ° used to identify line 17053 The primer SQ 1 875 is complementary to the inserted expression cassette 3, region near the insertion edge of the transgenic DNA. Amplicon generated using a combination of primers SQ1875 and SQ3623 (SEQ ID NO: 11) indicates the presence of line 17〇53. SEQ ID NO: 11 - 623 for identifying the line 17〇53. The primer SQ3623 is complementary to the region of the gene region flanked by the inserted 3' end of the expression cassette, and the insertion of the DNA near the transgenic gene. The amplicon generated using the combination of primer SQ1875 (SEQ ID NO: 1〇) and SQ3623 indicates the presence of line 147377.doc 201040274 17053. SEQ ID NO: 12 - primer SQ1871 used to identify flanking genomic DNA of line 17053. The primer SQ1871 is complementary to the inserted 5' region of the inserted cassette near the insertion edge of the transgenic gene DNA. SEQ ID NO: 13 - primer SQ1869 used to identify flanking genomic DNA of line 17053. The primer SQ1869 is complementary to the inserted expression cassette 5· region near the insertion edge of the transgenic gene DNA.

0 SEQ ID NO: 14—用以識別品系17053之側接基因體DNA 的引子SQ1880。引子SQ1880互補於靠近轉殖基因DNA插 入邊緣的所插入之表現卡匣3,區域。 SEQ ID NO: 1 5--用以識別品系17053之側接基因體DNA 的引子SQ3626。引子SQ3626互補於側接於所插入之表現 k 卡E5'末端、靠近轉殖基因DNA插入邊緣的基因體區域。 【實施方式】 提供以下定義及方法以便更好地定義本發明且在本發明 〇 之實踐中指導一般熟習此項技術者。除非另有說明,否則 術S吾係由彼等一般熟習相關技術者根據習知用法來理解。 如本文中所使用之術語「包含」意謂「包括但不限 於」。 本發明提供顯示出商業上可接受的對草甘膦除草劑之施 用的耐受性的品系1 7053及包含品系17053之基因轉殖稻米 植物。該品系包含基因轉殖DNA於米種質之染色體/基因 體中的單—插入。包含品系之植物可由以下步驟產生:(i) 使用包括所關注之轉殖基因的核酸構築體轉化植物細胞, 147377.doc 201040274 (Π)使由將轉殖基因插入至植物基因體中所產生之植物群 體再生,及(iii)選擇藉由將轉殖基因插入至植物基因體特 定位置特徵化之特定植物。術語「品系」係指所關注之基 因於基因體特定位置中的特定基因轉殖插入。包含品系之 植物可指包括轉殖基因經插入至植物基因體特定位置中之 原始轉化株。包含品系之植物亦可指包括轉殖基因經插入 至植物基因體特定位置中之轉化株的子代。該子代可藉由 轉化株或其子代與另一植物之間的有性異交(outcross)來產 生。該另一植物可為包含相同或不同轉殖基因之基因轉殖 植物及/或諸如來自不同品種者之非基因轉殖植物。甚至 在與輪迴親本(recurrent parent)的重複回交(back_cr〇ssing) 之後,所插入之DNA及經轉化之親本的側接DNA依然存在 於雜交子代的相同基因體位置。 士本文中所使用之術§吾r米」意謂稻(仏少% 且包 括可用米育種之所有植物品種,其包括野生型米種以及容 許種間育種之屬於稻屬之彼等植物。 術語「品系」亦指來自原始轉化株的包含所插入2Dna 及直接相鄰於所插入之DNA任一側之側接米基因體dna之 DNA分子。該DNA分子係藉由插入基因轉殖dna至稻米植 物基因體中之行為,亦即藉由轉化行為來形成。該DNA分 子因此包含該品系所特有且已插入有基因轉殖DNA之稻米 植物基因體所獨有之核苷酸序列,其中該核苷酸序列含有 求基因體DNA特定區域之序列及所插入之基因轉殖dNA之 序列。米品系17053中所插入之DNA相對於周圍米植物基 147377.doc •10- 201040274 因體dna之排列因此為米品系m53所特有且獨有的。該 DNA分子亦為包含品系i m3之植物之米染色體的組成部 分’因而在該植物t為靜態(statie)且可傳遞至植 . 代。 卞 .品系1 7 0 5 3賦予對施用於稻米植物之草甘膦除草劍的耐 受性。「草甘膦」係指N-膦醯基甲基-甘胺酸及其鹽。…膦 醯基甲基-甘胺酸為一種對廣泛範圍的植物種類具有活性 0 t除草劑。當施用於植物表面時,草甘膦藉由内吸作用在 植物内移動。草甘膦由於抑制莽草酸途徑而具有植物毒 性,遠莽草酸途徑提供芳族胺基酸合成前驅物。 士本文中所使用之術語「重組」係指通常未見於自然界 • 中且因而藉由人類干預所形成之DNA及/或蛋白質及/或有 ' 機體形式。該人類干預可產生重組DNA分子及/或重組植 物。如本文中所使用之「重組DNA分子」為一種包含並非 天然一起存在、而為人類干預之結果的dna分子組合之 Q DNA分子’例如包含至少兩種彼此異源之DNA分子之組合 的DNA分子;及/或人工合成的且包含與通常存在於自然 界中之聚核芽酸序列不同之聚核苷酸序列的dna分子; 及/或包含人工併入宿主細胞基因體DNA中之轉殖基因及 宿主細胞基因體之相關側接DNA之DNA分子。重組DNA分 子之實例為本文中所描述的由轉殖基因插入至米基因體中 所產生之DNA分子,其可最終致使重組rnA及/或蛋白質 分子表現於彼有機體中。如本文中所使用之「重組植物」 為一種通常不存在於自然界中之植物,其為人類干預之結 147377.doc -11- 201040274 果且含有併入其基因體中之轉殖基因及/或異源DNA分 子。由於該基因體改變’重組植物顯然不同於相關野生型 植物。重組植物之實例為本文中所描述包含品系n〇53之 稻米植物。 如本文中所使用之術語「轉殖基因」係指人工併入宿主 細胞基因體中之聚核苷酸分子。該轉殖基因可為相對於宿 主細胞之異源基因。術語「基因轉殖植物」係指包含該轉 殖基因之植物。 如本文中所使用之術語「異源」係指自然界中通常未見 第一分子與第二分子組合。例如,分子可來源於第一物種 且插入第二物種之基因體中。該分子因此相對於宿主為異 源的且經人工併入宿主細胞基因體中。 如本文中所使用之術語「喪合」係指藉由使第一DNA分 子與第二DNA分子融合所產生之單個dna分子其中第一 或第二DNA分子皆通常不會發現呈彼構型(亦即與另一者 融合)。後合DNA分子闵,士盔α 于因此為通常不見於自然界中之新 DN Α分子。 桊發明提供DNA分子 ,μ % q q «又σ +又甲 使用之術語「DNA」、「八工 「首 NA刀子」、「聚核苷酸分子」係 來源於基因體或合成之雙鐘λ八. 又鏈DNA分子,亦即去氧核糖核 酸鹼基之聚合物或聚核苷酸分 田上游)末端至3,(- 游)末端讀取。如本文中所傕用 丁尸/Γ便用之術語「DNA序列 苷酸序列」或「聚核苷酸序列在4t 夂序幻」係指DNA分子之核苷酸/ 列。本文中所用之專門術語為 六1^聯邦法規標題3 7中| 147377.doc -12- 201040274 1.822節所要求且陳列於WIPO標準ST.25(1998),附錄2, 表1及3之表格中。參考存在於基因轉殖品系17053之基因 體中所插入基因轉殖DNA的位置處之兩條核苷酸序列鏈中 之僅一條鏈,尤其參考SEQ ID NO: 1-6來揭示本發明。因 此,藉由暗示及推導,互補序列(在此項技術中亦稱作完 整互補序列或反向互補序列)屬於本發明之範疇内且因而 亦意欲屬於所主張標的物之範疇内。 對應於所插入之基因轉殖DNA的完整核苷酸序列及側接 於所插入之基因轉殖DNA任一端之米基因體DNA的實質性 區段之核苷酸序列在本文中以SEQ ID NO: 6提供。以SEQ ID NO: 5提供的經插入之基因轉殖DNA為此中的分段。藉 由磷酸二酯鍵實體連接於且因此側接於所插入之基因轉殖 DNA(SEQ ID NO: 5)5'末端之米基因體DNA的核苷酸序列 係如SEQ ID NO: 3中所示。藉由磷酸二酯鍵實體連接於且 因此側接於所插入之基因轉殖DNA(SEQ ID NO: 5)3'末端 之米基因體DNA的核苷酸序列係如SEQ ID NO: 4中所示。 品系1 7053另外包含兩個聚核苷酸序列,一個覆蓋5'位 置且一個覆蓋31位置,其中基因轉殖DNA插入基因體DNA 中,其在本文中稱作接合序列。「接合序列」或「接合區 域」係指覆蓋所插入之基因轉殖DNA及相鄰的側接基因體 DNA之DNA序列及/或對應DNA分子。接合序列係由兩個 各有20個核苷酸之序列任意表示且以SEQ ID NO: 1及SEQ ID NO: 2提供,其各自表示直接相鄰的側接基因體DNA之 1 0個核苷酸連接至所插入之DNA之1 0個核苷酸。該等核苷 147377.doc -13- 201040274 酸藉由磷酸二酯鍵相連。在米中,SEQ ID N〇: 1&SEQ ID NO: 2並非天然存在於基因體中且為基因轉殖品系17〇53所 特有且獨有,且在來源於稻米植物之任何核苷酸序列中對 忒等序列或該等序列之每一者至少約〗丨個、至少約丨3個或 至少約1 5個鄰接核苷酸的識別,為DNA獲自米品系17〇53 的確鑿證據,且鑑定樣本中來自米品系i 7〇53之DNA的存 在。SEQ ID NO: 1為覆蓋米基因體DNA與所插入DNA之5, 末》而之間接合處之20個核苦酸的序列。seq id NO: 2為覆 蓋米基因體DNA與所插入DNA之3'末端之間接合處之2〇個 核苷酸的序列。本發明因此提供至少含有SEq ID NO: 1 及/或SEQ ID NO: 2所陳列之核苷酸序列的DNA分子。足 以包括SEQ ID NO: 1至少約11個、至少約丨3個或至少約j 5 個鄰接核苷酸之來源於基因轉殖米品系i 7 〇 5 3之D N A的任 何區段皆屬於本發明之範疇。足以包括SEQ ID N〇: 2至少 約11個、至少約13個或至少約15個鄰接核苷酸之來源於基 因轉殖米品系17053之DNA的任何區段皆屬於本發明之範 疇。此外,包含該段落中所描述之任何序列之互補序列的 任何聚核苷酸皆屬於本發明之範疇。圖i說明SEQ ID n〇, 1-5相對於SEQ ID NO: 6由5,至3,排列的實體排列。本發明 亦提供包含至少 80%、85°/。、90%、95%、97%、98% 或 99% SEQ ID NO: 6之核酸分子。 本發明提供可用作引子或探針以鑑定樣本中來源於品系 17053之DNA之存在的例示性DNA分子。該等引子或探針 特異性針對目標核酸序列且因而適用於藉由本文中所描述 147377.doc 14- 201040274 之本發明方法識別米品系17053。 「引子j通常為高度純化的、分離之聚核苷酸,經設計 用於涉及熱擴增之特異性黏接或雜交方法。在熱擴增(諸 如聚合酶鏈反應(PCR))中可使用模板DNA(諸如米基因體 DNA之樣本)及一對引子來產生擴增子,其中產自該反應 之擴增子將具有對應於模板DNA的位於引子雜交至模板的 兩位點之間之序列的DNA序列。如本文中所使用之「擴增 q 子」為已使用擴增技術合成之一片或一段DNA。在本發明 之一實施例中,鑑定品系17053之擴增子包含非天然見於 米基因體中之序列。本發明之擴增子包含Seq id NO: 1、 SEQ ID NO: 2及/或其互補序列之至少約丨丨個鄰接核苷酸、 至少約13個鄰接核苷酸,或至少約丨〗個、至少約丨3個或至 - 少約15個鄰接核苷酸。引子通常經設計成與互補目標1)1^八 鏈雜交形成引子與目標之間之雜交體,且存在之引 子為聚合酶使用目標DNA鏈作為模板開始引子的延伸(亦 〇 即將其他核苷酸聚合至延長之聚核苷酸分子中)之識別位 點。當引子對用於本發明時意指通常在熱擴增反應或其他 習知核酸擴增方法中,使用結合雙鏈核苷酸區段之相反鏈 的兩種引子來實現線性擴增該引子對的個別元件所結合的 目軚位置之間之聚核苷酸區段之目的。提供SEQ ID 7-8及10-11作為適用作引子之例示性分子。提供如 SEQ ID NO: 7及SEQ ID NO: 8所提供之引子對作為第一 DNA分子及不同於第一 DNA分子之第二DNA分子,且兩種 分子各具有 SEQ ID NO: 3、SEQ ID NO: 5或 SEQ ID NO: 6 147377.doc -15- 201040274 之足夠長度的鄰接核:g:酸或其互補序列,以充當dna引 + ’ f 與來㈣米品系17G53之模板麵的熱 擴增反應時’產生包含SEQ ID N0:丨之至少約⑽鄰接核 苦酸、至少約!3個鄰接核苦酸,或至少約⑴固、至少㈣ 個或至少約15個鄰接㈣酸之擴增子。提供例示性DNA分 子對’亦即SEQIDN0: 1〇及SEQidn〇: u,作為第一 DNA分子及不同於第一 DNA分子之第二謝分子,且兩種 分子各具有 SEQ m NO: 4、SEQ ID Ν0· 5 或 SEQ ID N〇 6 之足夠長度的鄰接核苦酸或其互補序列,以充當DNA引 子田其一起用於與來源於米品系17053之模板DNA的埶 擴增反應時’產生包含SEQ m耻2之至少約㈣鄰接核 苦酸、至少約13個鄰接核苦酸,或至少約⑴固、至少㈣ 個或至少約15個鄰接核苷酸之擴增子。 仏針」為互補於目標核酸之—條鏈的分離核酸。本發 明之探針不僅包括特異性結合目標舰序列之去氧核糖核 酸或核糖核酸,而且亦包括特異性結合目標dna序列之, 醯胺及其他探針材料,且對該結合之㈣可用於鐘定、辨 別、確定或相特定樣本中該目標DNA序列之存在。探針 可與可镇測的習知標記或報導分子(例如放射性同位素、 配位體、化學發光劑或酶)連接。在本發明之一實施例 中’鐘定品系17G53之探針包含非天然見於米基因體中之 序列。提供SEQ ID NO: 9作為適用作探針之例示性dna分 子。 本發明之探針及引子可具有與目標序列之完全序列—致 147377.doc 201040274 挫,儘官可藉由習知方法設計出不同於目標序列而保留與 目b序列優先雜交之能力的引子及探針。為了使核酸分子 充當引子或探針,其僅需要在序列上足夠互補從而能夠在 . 所用特定溶劑及鹽濃度下形成穩定雙鏈結構。可使用任何 - 習知核酸雜交或擴增方法識別樣本中米品系17053之基因 轉殖DNA的存在。探針及引子通常長為至少约II個核苷 酸、至少約1 8個核苷酸、至少約24個核苷酸或至少約3〇個 0 核苷馱或更多。該等探針及引子在嚴格雜交條件下與目標 DNA序列特異性雜交。習知嚴格條件由Sambr〇〇k等人, I彻反 Hay赌等人福述於 Nuchic HybHdizati〇n,口 /VacOca/ 柄洲此办,iRL Press,Washingt〇n,(⑽5)。如 . 本文所用,若兩種核酸分子能夠形成反向平行的(anti_ - paraUel)雙鏈核酸結構,則稱這兩種分子能夠彼此特異性 雜交。若其顯示出完全互補性,則將一種核酸分子稱為另 一種核酸分子之「互補序列」。如本文所用,當一種分子 〇 之每個核苷酸互補於另一者之核苷酸時,則稱兩分子顯示 出70全互補性」。若其可以足夠穩定性彼此雜交,使其 在至少習知「低嚴格度」條件下保持彼此黏接,則稱兩分 子「最低程度地互補」。類似地,若其可以足夠穩定性彼 此雜交,使其在習知「高嚴格度」條件下保持彼此黏接, 則稱兩分子「互補」。因此可允許偏離完全互補性,只要 該等偏離並不完全阻礙分子形成雙鏈結構的能力。 如本文中所使用之術語「經分離」係指使一種分子與其 在原來或天然狀態中通常締合之其他分子至少部分分開。 147377.doc -17· 201040274 在一實施例中,術語「經分離」係指DNA分子與在其原來 或天然狀態中通常側接於該DNA分子之核酸至少部分分 開因此例如由於重組技術而使DN A分子融合至通常未 與其締合之調控或編碼序列在本文中視為經分離。即使該 等分子經整合至宿主細胞染色體中或存在於含有其他dna 分子的核酸溶液中,亦視為經分離。 热習此項技術者所熟知之許多方法可用於分離及操作本 發明中所揭不的DNA分子或其片段。例如,PCR(聚合酶鍵 反應)技術可用於擴增特定的起始DNA分子及/或產生原始 分子之變異體。DNA分子或其片段亦可藉由其他技術獲 得,諸如藉由化學方法直接合成片段,其通常藉由使用自 動寡核苷酸合成儀來實施。 本文中所提供之DNA分子及對應核苷酸序列因此尤其適 用於識別米品系17053、挑選包含米品系17〇53之植物品種 或雜交種、偵測樣本中來源於米品系17〇532DNA的存在 及針對米品系17053或包含米品系17053之植物及植物部分 之存在及/或不存在來監測樣本。 本發明提供稻米植物、子代、種子、植物細胞、植物部 刀(諸如t私、胚珠、炎、花、根或莖組織、纖維及葉)及 商品。該等植物、子代、種子、植物細胞、植物部分及商 έ有可偵測之量的本發明聚核苷酸,亦即諸如具有至少 -種如SEQ ID NO: 1及SEQ ID Ν0: 2所提供之序列的聚核 苷酉文。本發明之植物、子代、種子、植物細胞及植物部分 亦可含有一或多個其他轉殖基因。該轉殖基因可為編碼賦 147377.doc -18- 201040274 予所需特性之蛋白質或RNA分子的任何核苷酸序列,該所 需特性包括(但不限於)增強之昆蟲抗性、增加之用水效 率、增加之產量表現、增強之乾旱抗性、增強之種子品 質、改良之營養品質及/或增強之除草劑耐受性,其中所 需知·性係相對於缺乏該其他轉殖基因之稻米植物測量。 本發明提供包含品系17053之稻米植物、子代、種子、 植物細胞、及植物部分(諸如來源於基因轉殖稻米植物之 ◎ 化粉、胚珠、莢、花、根或莖組織及葉)。已根據布達佩 斯條約(Budapest Treaty)寄存包含品系17〇53之代表性種子 樣本以供運作本發明。所選用於接收寄存之貯藏所為美國 菌種保存中心(AT C C ),其地址為美國維吉尼亞州馬納沙斯 市大车大道 10801 號(10801 University Boulevard,Manassas, • Vlrgmia USA),郵遞區號20U0。ATCC貯藏所已指定品系 17053種子之登記號為PTA-9843。 本發明提供一種微生物,其包含具有SEQ ID N〇: 〇 SEQ ID NO: 2之DNA分子存在於其基因體中。該微生物之 實例為基因轉殖植物細胞。微生物(諸如本發明之植物細 胞)適用於許多工業應用中,其包括(但不限於):⑴用作科 學探究或工業研究之研究工具;(ii)用於培養而產生内源 性或重組碳水化合物、脂質、核酸或蛋白質產物或小分 子,隨後可用於科學研究或用作工業產品;及(丨⑴以現代 植物組織培養技術用以產生基因轉殖植物或植物組織培養 物,Ik後可用於農業研究或生產。微生物(諸如基因轉殖 植物細胞)之製備及使用採用現代微生物學技術及人類干 147377.doc -19- 201040274 預產生獨特之人造微生物。在該過程中,將重組DNA插入 植物細胞基因體中形成與天然存在之植物細胞分開且獨特 的基因轉殖植物細胞。該基因轉殖植物細胞可隨後如同細 菌及酵母細胞般使用現代微生物學技術培養且可以未分 化、單細胞狀態存在。新植物細胞之基因組成及表型為將 異源DNA整合至細胞基因體中所形成之技術效果。本發明 之另一態樣為本發明微生物之使用方法。本發明微生物 (諸如基因轉殖植物細胞)之使用方法包括⑴藉由將重組 DNA整合至細胞基因體中且隨後使用該細胞獲得具有相同 異源DNA之其他細胞來產生基因轉殖細胞的方法;(η)使 用現代微生物學技術培養含有重組DNA之細胞的方法; (iii)自所培養的細胞產生及純化内源性或重組石炭水化合 物、脂質、核酸或蛋白質產物之方法;及(iv)使用現代植 物組織培養技術以基因轉殖植物細胞產生基因轉殖植物或 基因轉瘦植物組織培養物之方法。 本發明之植物可將品系DNA(包括轉殖基因)傳遞至子 代。如本文中所使用之「子代」包括任何包含來源於祖先 植物之品系DNA及/或包含具有至少一種如SEQ ID NO: 1 及SEQ ID NO: 2所提供之序列的聚核苷酸之植物、種子、 植物細胞及/或再生植物部分。植物、子代及種子可為轉 殖基因之同型接合或異型接合。子代可由包含品系17〇53 之稻米植物所產生之種子長成及/或由以包含品系17〇5 3之 稻米植物的花粉受精(fertilized)之植物所產生之種子長 成。 147377.doc -20- 201040274 子代植物可自花授粉(self_p〇llinated,亦稱為「自交 (selfmg)」)產生純育系之植物(亦即為轉殖基因之同型接 合之植物)。適當子代之自交可產生為兩種外加外源基因 之同型接合之植物。 或者,子代植物可異交,例如與另一不相關之植物育 種產生變種或雜父種子或植物。另一不相關之植物可為 基因轉殖植物或非基因轉殖植物。因此,本發明之變種或 〇 雜交種子或植物可由缺乏米品系17〇53之特有且獨有dna 的第一親本與包含米品系17〇53之第二親本雜交衍生,產 生包含米品系17053之特有且獨有DNA的雜交種。各親本 可為雜交種或自交種(inbred)/變種,只要該雜交或育種產 生本發明之植物或種子,亦即種子具有至少一個等位基因 . 含有米品系17053所特有且獨有之DNA,包含SEQ ID NO: 1及SEQ ID NO: 2。因此,可使兩種不同基因轉殖植物交 配,產生含有兩種獨立隔離之外加外源基因的雜交後代。 ◎ 例如,包含品系1 7053之耐受草甘膦之米可與其他基因轉 殖稻米植物雜交,產生具有兩種基因轉殖親本特徵的植 物。其中之一實例為包含品系i 7〇53之耐受草甘膦之米與 具有一或多個其他特性之稻米植物雜交產生耐受草甘膦且 八有或多個其他特性之子代植物或種子。例如,顯示草 胺脚(phosphinothricin)或草錄膦(giuf〇_sinate)除草劑耐受 性之稻米植物可與包含品系17〇53之稻米植物雜交,產生 耐受草甘膦以及草胺膦或草銨膦除草劑之子代植物或種 子因此,用於本文所揭示之方法的植物及種子亦可含有 147377.doc 201040274 -或多個其他轉殖基因。該轉殖基因可 需特性之蛋白皙赤ρ ‘、可、·扁碼賦予所 貝或RNA分子的核苷酸序列, 括(但不限於)捭 虫 μ所呙特性包 β強之比触抗性、增加之用水效率 產量表現、i«強夕私3 1 双早、增加之 θ強之乾旱抗性、增強之種子品質、 養品質、&良之-力耐受性及/或增強之除草:2營 其中所需料係相料缺乏料他轉殖 =生’ 量。 土 M <掐未植物踯 基因轉殖植物已證明具有針對其之耐受性且本發 法可施用之除草劑包括(但不限於):草甘麟、草錢鱗、續 m m (sulfonylurea) ^ (imidazolinone) . ^ ^ (—ynu)、茅草枯(delapon)、環己二酮、料琳= 化酶(pr〇toporphyri〇n〇gen 〇xidase)抑制劑及異噁唑草酮 (isoxasflutole)除草劑。編碼與除草劑耐受性有關之蛋白質 的聚核苷酸分子為此項技術中已知的且包括(但不限於)編 碼以下之聚核苷酸分子:草甘膦耐受型5_烯醇丙酮醯莽草 酸-3-磷酸合成酶(EPSPS)(參見例如美國專利第'a? 〇6ι 號、第 5,633,435 號、第 6,040,497 號、第 5,〇94,945 號、第 5,804,425號、第6,248,876號、第7,183,110號、第虹39,247 號);草甘膦氧化還原酶(G0X)(參見例如美國專利第 5,776,760號)·’草甘膦-η-乙醯轉移酶(gAT);除草劑耐受 型乙醯乳酸合成酶(ALS,亦稱為乙醯羥基酸合成酶 (AHAS)) ’用以而才受石黃醯脲、咪0坐'#酮、三坐幷》密咬、氧 基苯甲酸嘧啶酯、磺醯胺基羰基三唑啉酮及/或雜芳基 醚;除草劑耐受型乙醯輔酶A羧化酶(ACCase)或R-2,4-二 147377.doc -22- 201040274 氯苯氧基丙酸二加氧酶(rdpA),用以耐受芳氧苯氧丙酸酯 (AOPP)(諸如合氯氟(haloxyfop)、快伏草(quizalofop)、二 氯氟(dichlorofop)及禾草靈(diclofop));諸如 2,4-D 二加氧 酶(tfdA)、R-2,4-二氯苯氧基丙酸二加氧酶(rdpA)、芳氧基 烷酸酯二加氧酶(AAD)及/或S-2,4-二氯丙酸二加氧酶 (sdpA)之去毒蛋白質,用以耐受合成生長素(synthetic auxin)除草劑;溴苯腈腈水解酶(Bxn),用以耐受溴苯腈 (參見例如美國專利第4,810,648號);八氫番茄紅素脫飽 和酶(phytoene desaturase,crtl),用以耐受氣草敏 (norflurazon);畢拉草抗性基因(bialaphos resistance,bar) 或草胺膦乙醯轉移酶(PAT)蛋白質(參見例如美國專利第 5,646,〇24號及第5,276,268號),用以耐受草銨膦及畢拉 草;及用以而ί受三酮類(曱基石黃草酮(mezotrione)、特布隆 (tembotrione)、托普美松(topromezone)、異°惡。坐)除草劑之 蛋白質,諸如耐受型4-羥基苯丙酮酸二加氧酶(HPPD)、去 毒細胞色素P450、或HPPD路徑旁支,諸如球形節桿菌 g7o0zybrwb)HPP氧化酶(HPPO)及食酸假單胞 嵐[Pseudomonas acidovorans)A-}l'?A 1-經化酶(HPAH)及 NADH氧化還原酶(HPAC)。 編碼適用於基因轉殖植物之其他蛋白質的聚核苷酸分子 為此項技術中已知的且包括(但不限於)編碼以下之聚核苷 酸分子:大腸桿菌(£. cW)cspA(PCT公開案第WO 2005/0333 18號);枯草芽胞桿菌(反wZ^/WcspBCPCT公開 案第WO 2005/0333 18號);玉米(Zm 轉運體(美國 147377.doc -23- 201040274 公開案第20040034888號、第20070011783號、第 20070294782 號);玉米 nfb2(a.k_a hap3)(美國公開案第 20050022266 號及第 20080104730 號、PCT 公開案第 WO 2008/002480號);棉花類csp(csp-like)(美國申請案第 1 1/980,758號、美國公開案第20050097640號、PCT公開案 第WO 2005/0333 18號);小麥類csp(美國專利第7,214,786 號、美國公開案第20050097640號);G1988(美國申請案第 〇9/474,435號、?。丁公開案第彻 04/031349號);。1073(美 國專利第6,717,034號及美國公開案第20050097631號); G 1274(美國公開案第20090265 813號)及CGPG 2117(美國公 開案第20080090998號)。編碼適用於基因轉殖植物之蛋白 質的其他聚核苷酸分子為此項技術中已知的且包括適用於 害蟲防治(諸如殺線蟲劑、殺真菌劑及殺昆蟲劑)之彼等 者。殺昆蟲劑劑包括(但不限於)Bt毒素及/或致病桿菌屬 、光合桿菌屬(P/zoior/mfei/M·?)、芽孢桿菌屬 (諸如側孢芽孢桿菌(万/aierosporow·?))、沙雷氏菌屬 (iSerraiia)、克雷伯氏菌屬(Ar/ehz’W/fl)、歐文氏菌屬 及其類似菌屬之毒素。Bt毒素包括(但不限 於)VIP毒素、Cryl毒素、Cry2毒素、Cry3毒素、Cry4毒 素、Cry5毒素、Cry7毒素、Cry8毒素、Cry9毒素及二元殺 昆蟲毒素(諸如來源於Bt之彼等者)及其類似毒素。 如同營養繁殖(vegetative propagation),亦涵蓋與親本 植物之回交及與非基因轉殖植物之異交。常用於不@ & 及作物之其他育種方法的描述可見於若干參考文獻中 147377.doc -24· 201040274 者,例如 Fehr 在 Breeding Methods f〇r Cultivar Development,Wilcox J.編,American s〇ciety 〇fAgr〇n〇my, Madison WI (1987)中。 本發明提供來源於包含品系17053之稻米植物的植物部 分。如本文中所使用之「植物部分」係指植物之任何部 分,其係由來源於包含品系17〇53之稻米植物之材料構 成。植物部分包括(但不限於)花粉、胚珠、莢、花、根或 〇 莖組織、纖維及葉。植物部分可為能成活的、不能成活 的、可再生的及/或不可再生的。 本發明提供來源於包含品系17〇53之稻米植物之商品。 如本文中所使用之「商品」係指由來源於包含品系1 . <稻米植物、種子、植物細胞或植物部分之材料構成的任 • ㈣成物或產物。商品可售予消費者且可為能成活的或不 月b成活的。不旎成活之商品包括(但不限於)不能成活之種 子及权物,加工之種子、種子部分及植物部分;脫水植物 €)、组織、冷隸物組織及加工之植物組織;加工為陸生及/ 或水生動物飼用之動物飼料、〉,由、粗粉(meai)、細粉 (flour)、碎片、糠、纖維、乳、乳酪、紙、乳膏、酒及任 何其他人類食用之食品的種子及植物部分,·及生物質及燃 料產印。能成活之商品包括(但不限於)種子及植物細胞。 包3 °°系17053之米因此可用以製造任何通常由求獲取之 商°°。任何來源於包含品系17053之植物的此種商品可含 有至ν可偵測之量的對應於米品系〗7〇53的特有且獨 繼’且具體而言可含有可侦測之量的含有SEQIDN0:丨 I47377.doc -25- 201040274 或SEQ ID NO: 2之至少15個鄰接核苷酸之聚核苷酸。可使 用聚核苷酸分子之任何標準偵測方法,包括本文中所揭示 之偵測方法。若商品中存在任何可偵測之量的SEQ⑴N〇: 1或SEQIDNO: 2 ’則該商品屬於本發明之範疇。 本發明之植物、子代、種子、植物細胞、植物部分(諸 如化粉、胚珠、莢、花、根或莖組織及葉)及商品因此尤 其適用於栽種植物以便產生包含品系17〇53之種子及/或植 物部分用於農業目的、產生包含品系i7〇53之子代用於植 物月種及研究目的、使用微生物學技術進行工業及研究應 用’及售予消費者。 本發明提供使用草甘膦除草劑及包含品系17〇53之植物 控制雜草之方法及產生植物之方法。提供一種控制田間雜 草之方法,該方法包括在田間種植包含品系17〇53之變種 或雜交植物且肖田間⑯用除草有纟劑量之草㈣以便㈣ 田間雜草但不傷害包含品系17G53之植物。該草甘鱗除草 劑之施用可在出苗前(亦即在包含品系m53之種子種植後 而在包含品系17053之植物出苗前的任何時候),或出苗後 (亦即在包含品系17053之植物出苗後的任何時候)進行。亦 ,供另-種控制田間雜草之方法,該方法包括施用有效劑 2二草甘膦除草劑來控制田間之雜草且隨後在田間種植包 系1 7053之稻米。該草甘膦除草劑之施用應在種植前 «士即在包含品系m53之種子種植之前)且可在種植前之任 何才候進仃,包括(但不限於)種植前約14天至種植前約j 天用於田間之除草有效劑量之草甘膦在生長季中將由範 I47377.doc -26- 201040274 圍介於约〇_5磅/英畝之草甘膦至約4 5磅/英畝之草甘膦組 成。可在生長季中多次施用草甘麟,例如兩次施用(諸如 種植前施用及出苗後施用或出苗前施用及出苗後施用)或 . 三次施用(諸如種植前施用、出苗前施用及出苗後施用)。 • 提供產生包含本發明之基因轉殖品系17053所特有且獨 有之DNA序列、耐受除草劑之稻米植物的方法。用於該等 方法之基因轉殖植物可為轉殖基因之同型接合或異型接 0 纟。藉由該等方法產生之子代植物可為變種或雜交植物; 可由包含品系17053之植物所產生的種子長成及/或由以包 含品系17053之稻米植物之花粉受精的植物所產生的包含 米品系17053之種子長成;且可為轉殖基因之同型接合或 . $型接合。子代植物隨後可自花授粉產生純育系之植物 .(亦即為轉殖基因之同型接合之植物),或可異交,例如與 另一不相W之植物f種,產生變種或雜交種子或植物。 可藉由使包含品系17053且包含含有SEQ m N〇:丄及 〇 EQ ID NO. 2之序列的聚核苷酸分子之植物與另一稻米植 物有性雜交並由此產生種子,其隨後長成子代植物,來產 生财受草甘膦除草劑之施用之稻米植物。該等子代植物可 隨後以草甘膦除草劑處理以選擇耐受草甘麟除草劑之子代 植物。或者’該等子代植物可使用鑑定方法加以分析以選 擇含有品系17053 DNA之子代植物。該另一用於雜交之植 物可能耐受或可能不耐受草甘膦除草劑且可能為基因轉殖 植物或可能並非基因轉殖植物。所產生之子代植物及/或 種子可為變種或雜交種子。 147377.doc -27- 201040274 戔方法時,一種植物與另一植物有性雜交(亦即異 花授粉)之步驟可藉由人類干預實現或促成,例如:藉由 人手收集-種植物之花粉且使該花粉接觸第二植物之花柱 或才頭藉由人手及/或行為移除、毁壞或掩蓋植物之雄 蕊或花藥(例如藉由去雄花穗或藉由施用化學殺配子劑)以 使传天然、自花授粉受阻且必須進行異花授粉來實現受精; 藉由在「直接授粉」之位置人工置放授粉見蟲⑼如藉由 在果園或田間置放蜂巢或藉由以授粉昆蟲困住植物);曰藉 由人工打開或移除花之部分以使外來花粉置放或接觸於花 柱或柱頭(例如,米天然具有防礙或阻止異花授粉之花, 使其在沒有人類干預的情況下天然行使自花授粉);藉由 選擇性置放植物(例如有意在授粉附近種植植物);及/或藉 由施用化學試劑提早開花或促進接受性(柱頭對於花粉^ 接受性)。 可藉由使包含品系17053且包含含有SEq ID N〇: i及 SEQ ID N〇: 2之序列的聚核㈣分子之植物自交並由此產 生種子,其隨後長成子代植物,來產生耐受草甘膦除草劑 之施用之稻米植物。該等子代植物可隨後以草甘膦除草劑 處理以選擇耐受草甘膦除草劑之子代植物。或者,該等子 代植物可使用鑑定方法加以分析以選擇含有品系 DNA之子代植物。實踐該方法時,一種植物與其自身之有 性雜交(亦即自花授粉或自交)之步驟可藉由人類干預實現 或促成,例如:藉由人手收集植物之花粉且使該花粉接觸 147377.doc -28- 201040274 同一植物之花柱或柱頭且隨後視情況防止該植物再受 精’·藉由人手及/或行為移除、毀壞或掩蓋其他附近植物 之雄蕊或花藥(例如藉由去雄花稳或藉由施用化學殺配子 • 齊!)以使得天然異花授粉受阻且必須進行自花授粉來實現 • 《精;藉由在「直接授粉」之位置人工置放授粉昆蟲(例 如藉由以授粉昆蟲僅困住一種植物);藉由人工操縱花或 其部分以進行自花授粉;藉由選擇性置放植物(例如有意 Ο 在授粉附近以外種植植物);及/或藉由施用化學試劑提早 開花或促進接受性(柱頭對於花粉之接受性)。 該等方法所涵蓋且藉由使用該等方法所產生之子代稻米 ㈣及種子將不同於其他稻米植物,例如由於該等子代稻 米植物及種子:為重組的且因而藉由人類干預形成;耐受 草甘膊除草劑;含有至少一個由本發明之轉殖基因DNA組 成之等位基因;及/或含有可偵測之量的選自由seq⑴ NO. 1及SEQ ID NO: 2組成之群之聚核:g:酸序列。種子可 ❹選自個別子代植物’且只要種子包含seq id N〇: ^及SEQ ID NO: 2,則其應屬於本發明之範疇。 只踐本發明蚪,兩種不同之基因轉殖植物可雜交產生含 有兩種獨立隔離之異源基因的雜交後代。適當子代之自交 可產生為兩種基因之同型接合之植物。如同營養繁殖,亦 涵蓋與親本植物之回交及與非基因轉殖植物之異交。常用 於不同特性及作物之其他方法的描述可見於若干參考文獻 中之者’例如 Fehr 在 Breeding Methods for Cultivar0 SEQ ID NO: 14 - primer SQ1880 used to identify flanking genomic DNA of line 17053. The primer SQ1880 is complementary to the inserted expression cassette 3 region near the insertion edge of the transgenic gene DNA. SEQ ID NO: 1 5--Introduction SQ3626 for identifying flanking genomic DNA of line 17053. The primer SQ3626 is complementary to the region of the gene region flanked by the inserted E5' end of the k-card, near the insertion edge of the transgenic DNA. [Embodiment] The following definitions and methods are provided to better define the present invention and to guide those skilled in the art in the practice of the present invention. Unless otherwise stated, they are understood by those of ordinary skill in the art in light of the The term "comprising" as used herein means "including but not limited to". The present invention provides a line 1 7053 which exhibits a commercially acceptable tolerance to the application of a glyphosate herbicide and a genetically modified rice plant comprising line 17053. This line contains a single-insertion of the gene-transferred DNA into the chromosome/gene of the rice germplasm. Plants comprising lines can be produced by the following steps: (i) transformation of plant cells with a nucleic acid construct comprising a gene of interest, 147377.doc 201040274 (Π) resulting from insertion of a transgenic gene into a plant genome Plant population regeneration, and (iii) selection of specific plants characterized by insertion of the transgenic gene into a specific location of the plant genome. The term "line" refers to a gene-specific insertion that is of interest in a particular location in a genome. A plant comprising a line may be an original transformant comprising a transgenic gene inserted into a specific location of a plant genome. A plant comprising a line may also be a progeny of a transformant comprising a transgenic gene inserted into a specific location of a plant genome. The progeny can be produced by sexual outcrossing between the transformant or its progeny and another plant. The other plant may be a genetically transgenic plant comprising the same or different transgenic genes and/or a non-genetically transgenic plant such as from a different species. Even after repeated backcrossing (back_cr〇ssing) with the recurrent parent, the inserted DNA and the flanking DNA of the transformed parent are still present in the same genetic locus of the progeny. The term "us" in the context of this article means rice (all less and includes all plant species available for rice breeding, including wild-type rice varieties and plants belonging to the rice genus that allow inter-species breeding. "Line" also refers to a DNA molecule from the original transformant comprising the inserted 2Dna and the flanking rice gene dna directly adjacent to either side of the inserted DNA. The DNA molecule is transferred to the rice by inserting the gene into the DNA. The behavior in a plant genome, that is, by a transformation behavior. The DNA molecule thus comprises a nucleotide sequence unique to the rice plant genome in which the gene is inserted and into which the gene has been inserted, wherein the core The nucleotide sequence contains the sequence of the specific region of the genomic DNA and the sequence of the inserted gene-transferred dNA. The DNA inserted in the rice line 17053 is aligned with the surrounding rice plant base 147377.doc •10-201040274 due to the arrangement of the body DNA It is unique and unique to the rice line m53. The DNA molecule is also a component of the rice chromosome of the plant containing the line i m3 'and thus is statie in the plant t and can be passed to the plant. 卞. Line 1 7 0 5 3 confers tolerance to glyphosate weeding swords applied to rice plants. "Glyphosate" means N-phosphinylmethyl-glycine and its salts. Glycosylglycine is a herbicide that is active against a wide range of plant species. When applied to the surface of plants, glyphosate moves within plants by systemic action. Glyphosate has a pathway to inhibit the shikimate pathway. Phytotoxicity, the oxalic acid pathway provides a precursor for the synthesis of aromatic amino acids. The term "recombinant" as used herein refers to DNA and/or protein that is not normally found in nature and thus is formed by human intervention. / or have a 'body form. This human intervention can produce recombinant DNA molecules and / or recombinant plants. As used herein, "recombinant DNA molecule" is a combination of DNA molecules that contain results that are not naturally present but are human intervention. a Q DNA molecule 'eg, a DNA molecule comprising a combination of at least two DNA molecules that are heterologous to each other; and/or synthetically and comprising a polynucleotide sequence that differs from the polynucleotide sequence normally found in nature. a dna molecule; and/or a DNA molecule comprising a transgenic gene artificially incorporated into the genomic DNA of the host cell and a DNA flanked by the host cell genome. Examples of the recombinant DNA molecule are the insertion of the transgenic gene as described herein. a DNA molecule produced in the rice genome, which may ultimately cause the recombinant rnA and/or protein molecule to be expressed in the organism. As used herein, "recombinant plant" is a plant that is not normally found in nature. For human intervention, 147377.doc -11- 201040274 contains and contains a transgenic gene and/or a heterologous DNA molecule incorporated into its genome. Because of this genomic alteration, 'recombinant plants are clearly different from related wild-type plants. An example of a recombinant plant is a rice plant comprising the line n〇53 as described herein. The term "transgenic gene" as used herein refers to a polynucleotide molecule that is artificially incorporated into the genome of a host cell. The transgene can be a heterologous gene relative to a host cell. The term "genetically transferred plant" refers to a plant comprising the transgenic gene. The term "heterologous" as used herein means that a combination of a first molecule and a second molecule is not normally found in nature. For example, a molecule can be derived from a first species and inserted into a genome of a second species. The molecule is therefore heterologous to the host and is artificially incorporated into the host cell genome. The term "dissociation" as used herein refers to a single dna molecule produced by fusing a first DNA molecule with a second DNA molecule, wherein the first or second DNA molecule is generally not found to be in a conformational form ( That is, it is integrated with the other). After the DNA molecule, the Helmet A is a new DN Α molecule that is usually not found in nature.桊Invention provides DNA molecules, μ % qq «also uses sigma + and the terms "DNA", "eighth" first NA knife, "polynucleotide molecule" derived from the genome or synthesis of the double clock λ8 The chain DNA molecule, which is the polymer of the deoxyribonucleic acid base or the upstream of the polynucleotide, is read to the end of the 3, (-) end. As used herein, the term "DNA sequence sequence" or "polynucleotide sequence at 4t" refers to the nucleotide/column of a DNA molecule. The terminology used in this article is stipulated in Title 3 of the Federal Regulations. 147377.doc -12- 201040274 Section 1.822 is required and displayed in the tables of WIPO Standard ST.25 (1998), Appendix 2, Tables 1 and 3. . The present invention is disclosed with reference to SEQ ID NOS: 1-6 with reference to SEQ ID NO: 1-6, with reference to only one of the two nucleotide sequence strands present at the position of the gene-transferred DNA inserted in the gene of the gene-transgenic line 17053. Thus, by implication and derivation, a complementary sequence (also referred to in the art as a complete complementary sequence or a reverse complementary sequence) is within the scope of the invention and is therefore intended to fall within the scope of the claimed subject matter. The nucleotide sequence corresponding to the entire nucleotide sequence of the inserted gene-transferred DNA and the substantial segment of the rice genomic DNA flanked at either end of the inserted gene-transforming DNA is herein SEQ ID NO : 6 available. The inserted gene-transferred DNA provided in SEQ ID NO: 5 is a segment in this. The nucleotide sequence of the genomic DNA which is ligated to the 5' end of the inserted gene transfer DNA (SEQ ID NO: 5) by a phosphodiester bond is SEQ ID NO: 3 Show. The nucleotide sequence of the genomic DNA which is ligated to the 3' end of the inserted gene transfer DNA (SEQ ID NO: 5) by a phosphodiester bond is SEQ ID NO: 4 Show. Line 1 7053 additionally comprises two polynucleotide sequences, one covering the 5' position and one covering the 31 position, wherein the gene-transforming DNA is inserted into the somatic DNA, which is referred to herein as the junction sequence. The "splicing sequence" or "joining region" refers to a DNA sequence and/or a corresponding DNA molecule covering the inserted gene-transferred DNA and the adjacent flanking DNA. The ligated sequence is arbitrarily represented by two sequences of 20 nucleotides each and is provided as SEQ ID NO: 1 and SEQ ID NO: 2, each of which represents 10 nucleosides of directly adjacent flanking DNA. The acid is attached to 10 nucleotides of the inserted DNA. The nucleosides 147377.doc -13- 201040274 acid are linked by a phosphodiester bond. In rice, SEQ ID N〇: 1& SEQ ID NO: 2 is not naturally occurring in the genome and is unique and unique to the gene transfer line 17〇53, and is derived from any nucleotide sequence derived from a rice plant. Recognition of at least about 、, at least about 丨3, or at least about 15 contiguous nucleotides for each of the sequences, or the like, is conclusive evidence that the DNA is obtained from the rice line 17〇53, And the presence of DNA from the rice line i 7〇53 in the sample was identified. SEQ ID NO: 1 is the sequence of 20 nucleotides covering the junction between the rice gene DNA and the inserted DNA. Seq id NO: 2 is a sequence of 2 nucleotides covering the junction between the rice gene DNA and the 3' end of the inserted DNA. The invention thus provides a DNA molecule comprising at least the nucleotide sequence set forth in SEq ID NO: 1 and/or SEQ ID NO: 2. Any segment derived from the DNA of the genetically modified rice line i 7 〇5 3 comprising at least about 11, at least about 3 or at least about 5 contiguous nucleotides of SEQ ID NO: 1 is within the scope of the invention The scope. Any segment of DNA derived from the gene-transgenic rice line 17053 that is sufficient to include at least about 11, at least about 13, or at least about 15 contiguous nucleotides of SEQ ID N: 2 is within the scope of the invention. Furthermore, any polynucleotide comprising a complementary sequence to any of the sequences described in this paragraph is within the scope of the invention. Figure i illustrates the physical arrangement of SEQ ID n 〇, 1-5 relative to SEQ ID NO: 6 from 5, to 3, arranged. The invention also provides at least 80%, 85°/. , 90%, 95%, 97%, 98% or 99% of the nucleic acid molecule of SEQ ID NO: 6. The invention provides exemplary DNA molecules that can be used as primers or probes to identify the presence of DNA derived from line 17053 in a sample. Such primers or probes are specific for the target nucleic acid sequence and are thus suitable for use in the method of the invention described herein by 147377.doc 14-201040274 to identify rice line 17053. "Introduction j is typically a highly purified, isolated polynucleotide designed for specific adhesion or hybridization methods involving thermal amplification. It can be used in thermal amplification (such as polymerase chain reaction (PCR)). Template DNA (such as a sample of rice genomic DNA) and a pair of primers to generate an amplicon, wherein the amplicon from the reaction will have a sequence corresponding to the template DNA that is hybridized between the primers to the two points of the template. DNA sequence. As used herein, "amplifying q" is a piece of DNA or a piece of DNA that has been synthesized using amplification techniques. In one embodiment of the invention, the amplicon of line 17053 is identified to comprise a sequence that is not found in the rice genome. The amplicon of the present invention comprises at least about contiguous nucleotides of Seq id NO: 1, SEQ ID NO: 2 and/or its complement, at least about 13 contiguous nucleotides, or at least about 丨At least about 3 or to - about 15 contiguous nucleotides. The primer is usually designed to hybridize with the complementary target 1)1^8-strand to form a hybrid between the primer and the target, and the primer is used for the polymerase to use the target DNA strand as a template to start the extension of the primer (also to other nucleotides) A recognition site that is polymerized into an extended polynucleotide molecule). When a primer pair is used in the present invention, it is meant that in a thermal amplification reaction or other conventional nucleic acid amplification method, two primers that bind to opposite strands of a double-stranded nucleotide segment are used to achieve linear amplification of the primer pair. The purpose of the polynucleotide segment between the target positions of the individual elements is combined. SEQ IDs 7-8 and 10-11 are provided as exemplary molecules suitable for use as primers. A primer pair as provided in SEQ ID NO: 7 and SEQ ID NO: 8 is provided as a first DNA molecule and a second DNA molecule different from the first DNA molecule, and each of the two molecules has SEQ ID NO: 3, SEQ ID NO: 5 or SEQ ID NO: 6 147377.doc -15- 201040274 A sufficient length of contiguous nuclei: g: acid or its complementary sequence to serve as a thermal expansion of the dna lead + 'f and the (4) rice line 17G53 template face Increasing the reaction to generate at least about (10) contiguous nucleotides comprising SEQ ID NO: 丨, at least about! 3 contiguous nucleotides, or at least about (1) solid, at least (four) or at least about 15 contiguous (tetra) acids. child. An exemplary DNA molecule pair is provided, ie, SEQ ID NO: 1 〇 and SEQ ID 〇: u, as a first DNA molecule and a second molecule different from the first DNA molecule, and each of the two molecules has SEQ m NO: 4, SEQ A sufficient length of contiguous nucleotide acid of ID Ν0·5 or SEQ ID N〇6 or a complementary sequence thereof to serve as a DNA primer for use together with a ruthenium amplification reaction derived from a template DNA derived from rice line 17053 At least about four (4) contiguous nucleotides, at least about 13 contiguous nucleotides, or at least about (1) solid, at least (four) or at least about 15 contiguous nucleotides of SEQ m. A sputum needle is an isolated nucleic acid that is complementary to a strand of a target nucleic acid. The probe of the present invention not only includes deoxyribonucleic acid or ribonucleic acid which specifically binds to a target ship sequence, but also includes a specific binding target dna sequence, guanamine and other probe materials, and the combination (4) can be used for the clock Determining, identifying, determining, or determining the presence of the target DNA sequence in a particular sample. The probe can be linked to a well-testable conventional label or reporter molecule (e.g., a radioisotope, a ligand, a chemiluminescent agent, or an enzyme). In one embodiment of the invention, the probe of the 'Qingding Line 17G53 comprises a sequence that is not naturally found in the rice genome. SEQ ID NO: 9 is provided as an exemplary dna molecule suitable for use as a probe. The probes and primers of the present invention may have a complete sequence with the target sequence - 147377.doc 201040274, and it is possible to design a primer which is different from the target sequence and retains the ability to preferentially hybridize with the target b sequence by a conventional method. Probe. In order for a nucleic acid molecule to act as a primer or probe, it only needs to be sufficiently complementary in sequence to be able to form a stable double-stranded structure at the particular solvent and salt concentration employed. Any of the known nucleic acid hybridization or amplification methods can be used to identify the presence of the transgenic DNA of the rice line 17053 in the sample. Probes and primers are typically at least about II nucleotides, at least about 18 nucleotides, at least about 24 nucleotides, or at least about 3 nucleosides or more. The probes and primers specifically hybridize to the target DNA sequence under stringent hybridization conditions. The strict conditions are known by Sambr〇〇k et al., I., and the gambling of others, in Nuchic HybHdizati〇n, mouth/VacOca/ 洲洲, iRL Press, Washingt〇n, ((10)5). As used herein, two nucleic acid molecules are said to be capable of specifically hybridizing to each other if they are capable of forming an anti-para-ar double-stranded nucleic acid structure. If it exhibits complete complementarity, one nucleic acid molecule is referred to as the "complementary sequence" of the other nucleic acid molecule. As used herein, when each nucleotide of one molecule is complementary to the nucleotide of the other, the two molecules are said to exhibit 70 full complementarity. The two molecules are said to be "minimally complementary" if they are sufficiently stable to hybridize to each other to adhere to each other under at least the "low stringency" conditions. Similarly, two molecules are said to be "complementary" if they are sufficiently stable to hybridize to each other under known "high stringency" conditions. Thus deviations from complete complementarity may be allowed as long as such deviation does not completely impede the ability of the molecule to form a double-stranded structure. The term "isolated" as used herein refers to at least partially separating a molecule from other molecules that it normally associates with in its original or natural state. 147377.doc -17· 201040274 In one embodiment, the term "isolated" refers to a DNA molecule that is at least partially separated from a nucleic acid that is normally flanked by the DNA molecule in its original or native state, such that, for example, due to recombinant techniques, DN A molecule is fused to a regulatory or coding sequence that is not normally associated therewith and is considered isolated herein. Even if the molecules are integrated into the host cell chromosome or are present in a nucleic acid solution containing other DNA molecules, they are considered to be isolated. Many methods well known to those skilled in the art can be used to isolate and manipulate DNA molecules or fragments thereof that are not disclosed in the present invention. For example, PCR (polymerase bond reaction) techniques can be used to amplify specific starting DNA molecules and/or to generate variants of the original molecule. DNA molecules or fragments thereof can also be obtained by other techniques, such as direct synthesis of fragments by chemical methods, which are typically carried out by using an automated oligonucleotide synthesizer. The DNA molecules and corresponding nucleotide sequences provided herein are therefore particularly suitable for identifying rice lines 17053, selecting plant varieties or hybrids comprising rice lines 17〇53, detecting the presence of the rice line 17〇532 DNA from the sample and Samples were monitored for the presence and/or absence of rice line 17053 or plants and plant parts containing rice line 17053. The present invention provides rice plants, progeny, seeds, plant cells, plant knives (such as t private, ovule, inflammation, flower, root or stem tissue, fibers and leaves) and commodities. Such plants, progeny, seeds, plant cells, plant parts and lysates have detectable amounts of the polynucleotide of the invention, ie such as having at least one such as SEQ ID NO: 1 and SEQ ID Ν 0: 2 The sequence of the provided polynucleosides. The plants, progeny, seeds, plant cells and plant parts of the invention may also contain one or more other transgenic genes. The transgene may be any nucleotide sequence encoding a protein or RNA molecule that confers the desired properties to 147377.doc -18-201040274, including but not limited to enhanced insect resistance, increased water use Efficiency, increased yield performance, enhanced drought resistance, enhanced seed quality, improved nutritional quality, and/or enhanced herbicide tolerance, where the desired knowledge is relative to rice lacking the other transgenic genes Plant measurement. The present invention provides rice plants, progeny, seeds, plant cells, and plant parts comprising lines 17053 (such as powders, ovules, pods, flowers, roots or stem tissues and leaves derived from genetically modified rice plants). Representative seed samples containing lines 17〇53 have been deposited under the Budapest Treaty for the operation of the present invention. The storage facility selected for receiving storage is the American Type Culture Collection (AT CC) at 10801 University Boulevard, Manassas, Vlrgmia USA, USA. Area code 20U0. The ATCC storage designated line 17053 seed registration number is PTA-9843. The present invention provides a microorganism comprising a DNA molecule having SEQ ID N: SEQ ID NO: 2 present in its genome. An example of such a microorganism is a gene transfer plant cell. Microorganisms, such as plant cells of the invention, are suitable for use in a variety of industrial applications including, but not limited to: (1) as a research tool for scientific inquiry or industrial research; (ii) for culture to produce endogenous or recombinant carbon water Compounds, lipids, nucleic acids or protein products or small molecules, which can then be used for scientific research or as industrial products; and (丨(1) can be used in modern plant tissue culture techniques to produce genetically transgenic plants or plant tissue cultures, which can be used after Ik Agricultural research or production. Preparation and use of microorganisms (such as gene transfer plant cells) using modern microbiology techniques and human stem 147377.doc -19- 201040274 pre-production of unique artificial microorganisms. In this process, recombinant DNA is inserted into plants. A gene transfer plant cell that is separate and unique from the naturally occurring plant cell is formed in the cell genome. The gene transfer plant cell can then be cultured using modern microbiological techniques like bacteria and yeast cells and can exist in an undifferentiated, single-cell state. The genetic composition and phenotype of new plant cells is to integrate heterologous DNA into fine Technical effects formed in the genome. Another aspect of the invention is the method of using the microorganism of the invention. The method of using the microorganism of the invention (such as a gene transfer plant cell) comprises (1) by integrating the recombinant DNA into the cell genome And subsequent use of the cells to obtain other cells having the same heterologous DNA to produce gene-transgenic cells; (n) methods for culturing cells containing recombinant DNA using modern microbiological techniques; (iii) production from cultured cells And methods for purifying endogenous or recombinant charcoal water compounds, lipids, nucleic acids or protein products; and (iv) using genetic engineering tissue culture techniques to genetically transfer plant cells to produce gene transfer plants or gene to lean plant tissue cultures The plant of the present invention can deliver strain DNA (including a transgene) to a progeny. As used herein, "progeny" includes any strain comprising DNA derived from an ancestral plant and/or comprising at least one such as SEQ. Plant NO, Plant, Seed, Plant Cell and/or Reproductive Plant Department of ID NO: 1 and SEQ ID NO: 2 Plants, progeny and seeds may be homozygous or heterozygous for the transgenic genes. Progeny may be grown from seeds produced by rice plants containing lines 17〇53 and/or from rice plants containing lines 17〇5 3 Seeds produced by fertilized fertilized plants. 147377.doc -20- 201040274 Progeny plants can be self-pollinated (self_p〇llinated, also known as "selfmg") to produce pure breeding lines. A plant (that is, a homozygous plant of a transgenic gene). Selfing of appropriate progeny can result in a homozygous plant of two exogenous genes. Alternatively, the progeny plant can be outcrossed, for example, with another Related plant breeding produces variants or parental seeds or plants. Another unrelated plant can be a gene transfer plant or a non-gene transfer plant. Thus, a variant or a hybrid seed or plant of the invention may be derived from a first parent lacking the unique line of the rice line 17〇53 and having a distinct dna, and a second parent comprising the rice line 17〇53, resulting in a rice line containing 17053 A unique and unique hybrid of DNA. Each parent may be a hybrid or an inbred/variant, as long as the hybrid or breeding produces the plant or seed of the invention, ie the seed has at least one allele. Contains the unique and unique rice line 17053 DNA comprising SEQ ID NO: 1 and SEQ ID NO: 2. Thus, two different gene transfer plants can be mated to produce hybrid progeny containing two independent isolates plus a foreign gene. ◎ For example, a glyphosate-tolerant rice comprising line 1 7053 can be crossed with other genetically transgenic rice plants to produce plants having the characteristics of two gene-transforming parents. An example of this is that a glyphosate-tolerant rice comprising line i 7〇53 is crossed with a rice plant having one or more other characteristics to produce a progeny plant or seed that is tolerant to glyphosate and has eight or more other characteristics. . For example, a rice plant showing phosphinothricin or giuf〇_sinate herbicide tolerance can be crossed with a rice plant comprising line 17〇53 to produce glyphosate-tolerant and glufosinate-resistant or Progeny plants or seeds of glufosinate herbicides Thus, plants and seeds for use in the methods disclosed herein may also contain 147377.doc 201040274 - or a plurality of other transgenic genes. The transgenic gene may have a property of a protein 皙 red ρ, a, a flat code to confer a nucleotide sequence to the shell or RNA molecule, including but not limited to aphid μ Sexuality, increased water efficiency, yield performance, i« strong eve private 3 1 double early, increased θ strong drought resistance, enhanced seed quality, quality, & good-force tolerance and / or enhanced weeding : 2 battalions of the required materials are lacking in material and he is transferred to the raw quantity. Soil M <Non-plant 踯 gene transfer plants have been shown to have tolerance to them and herbicides which can be applied by the present method include (but are not limited to): licorice, turf scale, continuum mm (sulfonylurea) ^ ( Imidazolinone) . ^ ^ (-ynu), thatch (delapon), cyclohexanedione, lin = enzyme (pr〇toporphyri〇n〇gen 〇xidase) inhibitor and isoxasflutole herbicide . Polynucleotide molecules encoding proteins associated with herbicide tolerance are known in the art and include, but are not limited to, polynucleotide molecules encoding the following: glyphosate-tolerant 5-enol Acetone oxalic acid-3-phosphate synthase (EPSPS) (see, for example, U.S. Patent Nos. 'a? 〇6, 5, 633, 435, 6, 040, 497, 5, 〇 94, 945, 5, 804, 425, 6, 248, 876, 7,183,110, No. 39,247); glyphosate oxidoreductase (G0X) (see, e.g., U.S. Patent No. 5,776,760) · glyphosate-η-acetyltransferase (gAT); herbicide resistant The type of acetaminophen lactate synthase (ALS, also known as acetamidine hydroxyacid synthase (AHAS)) is used by the scutellaria sulphate, the sulphate, the ketone, the ketone Pyrimidine ester, sulfonamide carbonyl triazolinone and/or heteroaryl ether; herbicide tolerant acetamyl coenzyme A carboxylase (ACCase) or R-2,4-II 147377.doc -22- 201040274 Chlorophenoxypropionic acid dioxygenase (rdpA) to withstand aryloxyphenoxypropionate (AOPP) (such as haloxyfop, quizalofop) , dichlorofop and diclofop); such as 2,4-D dioxygenase (tfdA), R-2,4-dichlorophenoxypropionic acid dioxygenase (rdpA) , a deoxygenated protein of aryloxyalkanoate dioxygenase (AAD) and/or S-2,4-dichloropropionic acid dioxygenase (sdpA), used to tolerate synthetic auxin Herbicide; bromoxynil nitrilase (Bxn) to tolerate bromoxynil (see, e.g., U.S. Patent No. 4,810,648); phytoene desaturase (crtl) to withstand gas Norflurazon; bialaphos resistance (bar) or glufosinate acetyltransferase (PAT) protein (see, for example, U.S. Patent Nos. 5,646, 〇24 and 5,276,268) for resistance Containing glufosinate and biloba; and using it for triketones (mezotrione, tembotrione, topromezone, iso-evil. sitting) weeding Protein, such as tolerant 4-hydroxyphenylpyruvate dioxygenase (HPPD), detoxified cytochrome P450, or HPPD pathway accessory, such as G. globulin g7o0zy Brwb) HPP oxidase (HPPO) and Pseudomonas acidovorans A-}l'?A 1-Chemase (HPAH) and NADH oxidoreductase (HPAC). Polynucleotide molecules encoding other proteins suitable for use in gene transfer plants are known in the art and include, but are not limited to, polynucleotide molecules encoding the following: E. coli (£. cW) cspA (PCT) Publication No. WO 2005/0333 No. 18); Bacillus subtilis (anti-wZ^/WcspBCPCT Publication No. WO 2005/0333 18); corn (Zm transporter (US 147377.doc -23-201040274 Publication No. 20040434888) , No. 20070011783, No. 20070294782); corn nfb2 (a.k_a hap3) (US Publication No. 20050022266 and No. 20080104730, PCT Publication No. WO 2008/002480); cotton csp (csp-like) ( US Application No. 1 1/980,758, U.S. Publication No. 20050097640, PCT Publication No. WO 2005/0333 18); Wheat Csp (US Patent No. 7,214,786, U.S. Publication No. 20050097640); G1988 (USA) Application No. 9/474, 435, pp. No. 04/031, 349, filed on Jun. No. No. No. No. No. No. No. No. No. No. No. No. No. No. No. No. No. No. No. No. No. No. And CGPG 2117 (United States Publication No. 20080090998. Other polynucleotide molecules encoding proteins suitable for gene transfer plants are known in the art and include pest control (such as nematicides, fungicides, and insecticides). The insecticides include, but are not limited to, Bt toxins and/or pathogenic genus, photosynthetic genus (P/zoior/mfei/M·?), Bacillus (such as Bacillus licheniformis) (10,000/aierosporow·?)), iSerraiia, Klebsiella (Ar/ehz'W/fl), Erwinia and similar genus toxins. Bt toxins include ( But not limited to) VIP toxin, Cryl toxin, Cry2 toxin, Cry3 toxin, Cry4 toxin, Cry5 toxin, Cry7 toxin, Cry8 toxin, Cry9 toxin and binary insecticidal toxin (such as those derived from Bt) and similar toxins Like vegetative propagation, it also covers backcrossing with parent plants and outcrossing with non-genetically transformed plants. Descriptions of other breeding methods commonly used for @& and crops can be found in several references 147377 .doc -24· 201040274, Fehr as in Breeding Methods f〇r Cultivar Development, Wilcox J. ed, American s〇ciety 〇fAgr〇n〇my, Madison WI (1987) in. The present invention provides a plant part derived from a rice plant comprising line 17053. As used herein, "plant part" means any part of a plant which is composed of a material derived from a rice plant comprising line 17〇53. Plant parts include, but are not limited to, pollen, ovules, pods, flowers, roots or stem tissue, fibers and leaves. The plant parts can be viable, non-viable, regenerable and/or non-renewable. The present invention provides a product derived from a rice plant comprising the line 17〇53. As used herein, "commodity" means derived from a contained line 1 . <(4) a product or product of a material of a rice plant, seed, plant cell or plant part. Goods can be sold to consumers and can survive or survive. Commodity that does not survive includes (but is not limited to) seeds and weights that cannot survive, seeds, seed parts and plant parts that are processed; dehydrated plants €), tissues, cold tissue and processed plant tissues; And/or animal feed for aquatic animals, 〉, 、,meai, flour, shards, sorghum, fiber, milk, cheese, paper, cream, wine and any other human food Seeds and plant parts, and biomass and fuel production. Commodities that can survive include, but are not limited to, seeds and plant cells. The package 3 ° ° 17053 meters can therefore be used to make any quotient that is usually obtained by seeking. Any such product derived from a plant comprising line 17053 can contain a unique and unique amount corresponding to the ν detectable amount of 米7〇53 and specifically contain detectable amounts of SEQ IDN0 : 丨I47377.doc -25- 201040274 or a polynucleotide of at least 15 contiguous nucleotides of SEQ ID NO: 2. Any standard detection method using a polynucleotide molecule can be used, including the detection methods disclosed herein. If any detectable amount of SEQ(1)N〇: 1 or SEQ ID NO: 2 ' is present in the commodity, the article falls within the scope of the invention. Plants, progeny, seeds, plant cells, plant parts (such as powders, ovules, pods, flowers, roots or stem tissues and leaves) and commodities of the invention are therefore particularly suitable for planting plants to produce seeds comprising lines 17〇53 And/or plant parts are used for agricultural purposes, producing progeny containing line i7〇53 for plant species and research purposes, using microbiological techniques for industrial and research applications' and selling to consumers. The present invention provides methods of using glyphosate herbicides and plants comprising lines 17〇53 to control weeds and methods of producing plants. Providing a method of controlling weeds in a field comprising planting a variety or hybrid plant comprising lines 17〇53 in the field and using a weeding dose of grass (4) in Xiaotian 16 for (iv) field weeds but not plants containing line 17G53 . The application of the herbicide herbicide can be carried out before emergence (i.e., at any time after planting the seed containing the line m53 and before emergence of the plant containing the line 17053), or after emergence (i.e., emergence of the plant containing the line 17053) After any time). Also, for another method of controlling field weeds, the method comprises applying an effective agent 2 diglyphosate herbicide to control weeds in the field and then planting rice of 170353 in the field. The application of the glyphosate herbicide should be carried out before planting, ie before seeding of the line containing m53, and can be carried out before any planting, including (but not limited to) about 14 days before planting until before planting. The herbicidal effective dose of glyphosate used in the field for about 7 days will be between about 〇5 lbs/acre of glyphosate to about 45 lbs/acre in the growing season by Fan I47377.doc -26- 201040274. Glyphosate composition. The grass can be applied multiple times during the growing season, for example, two applications (such as pre-plant application and post-emergence application or pre-emergence application and post-emergence application) or three applications (such as pre-plant application, pre-emergence application and post-emergence application). Application). • A method of producing a rice plant comprising a DNA sequence unique to the gene-transgenic line of the present invention and having a unique DNA sequence and tolerance to a herbicide. The genetically transgenic plants used in these methods may be homozygous or heterozygous for the transgenic gene. The progeny plants produced by such methods may be varieties or hybrid plants; the rice-containing lines produced by the seeds produced by the plants comprising line 17053 and/or by the plants fertilized with the pollen of the rice plants containing line 17053 The seed of 17053 grows; and it can be a homozygous junction of the transgenic gene or a . The progeny plants can then be self-pollinated to produce plants of the pure breeding line (ie, plants that are homozygous for the transgenic genes), or can be cross-extracted, for example, with another species of plant, which produces variants or hybrids. Seed or plant. Plants comprising a strain of a molecule comprising a sequence of SEQ m N〇:丄 and 〇EQ ID NO. 2 can be sexually crossed with another rice plant and thereby produce a seed, which is subsequently grown A progeny plant is produced to produce a rice plant that is applied by a glyphosate herbicide. The progeny plants can then be treated with a glyphosate herbicide to select progeny plants that are tolerant to the herbicide herbicide. Alternatively, the progeny plants can be analyzed using an identification method to select progeny plants containing line 17053 DNA. The other plant for hybridization may or may not tolerate the glyphosate herbicide and may be a genetically transgenic plant or may not be a genetically transformed plant. The progeny plants and/or seeds produced may be varieties or hybrid seeds. 147377.doc -27- 201040274 In the case of sputum, the step of sexually crossing a plant with another plant (ie, cross-pollination) can be achieved or facilitated by human intervention, for example by collecting the pollen of the plant by hand. Exposing the pollen to the style of the second plant or removing or destroying or stabbing the stamens or anthers of the plant by hand and/or behavior (for example, by emasculation or by applying a chemical gametocide) Self-pollination is obstructed and cross-pollination must be carried out to achieve fertilization; artificial pollination is carried out by placing seeds at the "direct pollination" position (9) by placing beehives in orchards or in the fields or by trapping plants with pollinating insects ) by manually opening or removing parts of the flower to place or contact the external pollen on the style or stigma (for example, rice naturally prevents or prevents cross-pollination of flowers without human intervention) Naturally self-pollination; by selective placement of plants (eg, intentionally planting plants near pollination); and/or by early application of chemical agents to promote flowering or to promote receptivity (column for ^ Powder acceptance). Plants can be produced by self-crossing a plant comprising line 17053 and comprising a polynuclear (tetra) molecule comprising the sequence of SEq ID N〇: i and SEQ ID N〇: 2 and thereby producing a seed, which subsequently grows into a progeny plant Rice plants applied by glyphosate herbicides. The progeny plants can then be treated with a glyphosate herbicide to select progeny plants that are tolerant to glyphosate herbicides. Alternatively, the progeny plants can be analyzed using an identification method to select progeny plants containing the line DNA. In practicing this method, the step of sexual hybridization (ie, self-pollination or self-crossing) of a plant with itself can be achieved or facilitated by human intervention, for example, by collecting the pollen of the plant by hand and bringing the pollen into contact with 147377. Doc -28- 201040274 The style or stigma of the same plant and subsequent prevention of re-fertilization of the plant as appropriate. · Removal, destruction or obscuration of stamens or anthers of other nearby plants by hand and/or behavior (eg by emasculation or By applying chemical gametes • Qi!) to prevent natural cross-pollination from being polluted and self-pollination must be achieved • Fine; artificially placed pollinators at the location of “direct pollination” (eg by pollinating insects) Trapping only one plant); self-pollination by artificial manipulation of flowers or parts thereof; by selective placement of plants (eg, intentionally planting plants outside the pollination); and/or early flowering by application of chemical agents Or promote acceptance (the stigma is acceptable for pollen). The progeny rice (4) and seeds covered by the methods and produced by using the methods will be different from other rice plants, for example due to the progeny rice plants and seeds: reconstituted and thus formed by human intervention; a herbicide herbicide; comprising at least one allele consisting of the DNA of the gene of the present invention; and/or comprising a detectable amount of a group selected from the group consisting of seq(1) NO. 1 and SEQ ID NO: Core: g: acid sequence. The seed may be selected from the individual progeny plants' and as long as the seed comprises seq id N〇: ^ and SEQ ID NO: 2, it is within the scope of the invention. In the practice of the present invention, two different genetically transgenic plants can be crossed to produce hybrid progeny containing two independently isolated heterologous genes. Selfing of appropriate progeny can result in plants that are homozygous for both genes. Like vegetative reproduction, it also covers backcrossing with parent plants and outcrossing with non-genetically transformed plants. Descriptions of other methods commonly used for different characteristics and crops can be found in several references, such as Fehr in Breeding Methods for Cultivar

DeVel〇pment,WileGX L編,Αη^^η —My Ag而〇; 147377.doc -29· 201040274DeVel〇pment, edited by WileGX L, Αη^^η—My Ag and 〇; 147377.doc -29· 201040274

Madison WI (1987)中。 用於本文中所揭示之方法的植物及種子亦可含有一或多 個其他轉殖基因。該轉殖基因可為編碼賦予所需特性之蛋 白質或RNA分子的任何核普酸序列,該所需特性包括(但 不限於):¾強之昆蟲抗性、增加之用水效率、增加之產量 表現、增強之乾旱抗性、增強之種子品質、改良之營養品 質及/或增強之除草劑耐受性,#中所需特性係相對於= 乏該其他轉殖基因之稻米植物測量。 本發明之方法因此尤其適用於在栽種植物的同時控制田 間之雜草以便產生包含品系m53之種子及/或植物部分用 :農業或研究目的,選擇包含品系17〇53之子代用於植物 育種或研究㈣’及產生包含品系17G53之子代植物及種 〇 本發明之植物、子代、種早、μ & i & \徑于植物細胞、植物部分(諸 如化粉、胚珠、英、花、根或莖組織及葉)及商品可針對 DNA組成、基因表現及/或蛋白質表現加㈣估。該評估 可藉由使用諸如PCR、北方墨點法、南方分析、西方墨點 法、免疫沈澱及ELISA之標準方法或藉由使用本文中所提 供之偵測方法及/或偵測套組來進行。 、提供谓測樣本中米〇口口系m 5 3所特有之材料之存在的方 法。-種方法包括偵測包含品系17053之米細胞、組織或 植物所特有並來源於其之DNA的存在。該方法提供模板 DNA樣本以接觸引子對,該引子對能夠在適合於熱擴增之 條件下產生品系17G53臟之擴增子,尤其含有_⑴ 147377.doc -30- 201040274 NO. 1或SEQ ID NO: 2之至少1 5個鄰接核普酸或其互補序 列之擴增子。該擴增子係由來源於米品系17053之模板 DNA分子產生’只要模板DNA分子中併入有如SEQIDNO· 1及SEQ ID NO: 2所陳列之特有且獨有之核苷酸序列。根 據所選用於產生擴增子之聚合酶’擴增子可為單鏈或雙鏈 Ο Ο D N A或R N A。該方法可用於偵測產生於任何該熱擴增反應 之擴增子分子,及確認擴增子序列内對應於SEQ ID N〇:】 或SEQ ID NO: 2之核苷酸或其互補序列之存在。對擴增子 中對應於SEQ ID NO: 1或SEQ ID NO·· 2之核苷酸或其互補 序列的偵測,可確定及/或鑑定樣本中品系17〇53特有之 DNA之存在及因此包含品系17〇53之生物材料之存在。 提供另一種方法用於偵測由來源於稻米植物或稻米植物 組織之材料組成的樣本中對應於SEQ ID n〇: 3及π。 NO. 4,之DNA分子的存在。該方法係由以下步驟組成:⑴ 由稻米植物或一組不同的稻米植物提取DNA樣本,(ii)使 DNA樣本接觸顯示出如SEQ ID NO: 1或SEq ID N〇: 2所陳 列之至少15個鄰接核㈣之眶探針分子,㈣使探針及 腦樣本在嚴格雜交條件下雜交,及隨後(iv)彳貞測探針與 目標DNA樣本之間的雜交品系。視具體情況而定,在匪 樣本中’對雜交組合物之偵測鑑定SEQ⑴n〇: 3或卿ι〇 NO. 2之存在。或者,不存在雜交鑑定樣本中不存在基因 轉殖°°系或者’測得特定稻米植物含有對應於SEQ ID NO: 1或SEQ ID Ν〇: 2之序列之任—者或兩者或其互補序 列’ W定該稻米植物含有至少一個對應於品系17053之 147377.doc -31 · 201040274 等位基因。 因此可藉由任何熟知之核酸偵測方法(諸如聚合酶鏈反 應(PCR)或使用核酸探針之DNA雜交)來偵測本發明核酸分 子之存在。例如由 Taverniers 等人(J. Agric. Food Chem·, 53: 3041-3052,2005)論述了品系特異性PCR檢,定,其中演 示了用於基因轉殖玉米系Btll、Btl76及GA21且用於芥花 品系RT73之品系特異性追蹤系統。在此項研究中,基於各 品系之基因體/轉殖基因接合處之序列來設計品系特異性 引子及探針。基因轉殖植物品系特異性DNA偵測方法亦已 描述於美國專利第6,893,826號、第6,825,400號、第 6,740,488號、第 6,733,974號、第 6,689,880號、第 6,900,014號 及第 6,818,807號。 提供DNA偵測套組。一種類型之套組含有至少一種具有 類似或互補於 SEQ ID NO: 3、SEQ ID NO: 5 或 SEQ ID NO·· 6之足夠長度鄰接核苷酸之DNA分子,充當特異性偵測樣 本中來源於基因轉殖米品系17053之DNA之存在的DNA引 子或探針。以該套組偵測之DNA分子含有如SEQ ID NO: 1 所陳列之至少15個鄰接核苷酸或其互補序列。或者,套組 可含有至少一種具有類似或互補於SEQ ID NO: 4、SEQ ID NO: 5或SEQ ID NO: 6之足夠長度鄰接核苷酸之DNA分 子,充當特異性偵測生物樣本中來源於基因轉殖米品系 1 7053之DNA之存在的DNA引子或探針。以該套組偵測之 DNA分子含有如SEQ ID NO: 2所陳列之至少15個鄰接核苷 酸或其互補序列。 147377.doc -32- 201040274 一種替代套組係採用一種使目標DNA樣本接觸如上所述 之引子對,隨後進行足以產生包含SEQ ID NO: 2之至少15 個鄰接核苷酸或其互補序列之擴增子的核酸擴增反應之方 ‘法。對該擴增子之偵測及對該擴增子之序列RSEQ ID NO: 1或SEQ ID NO: 2之不少於15個鄰接核苷酸或其互補序列 之存在的測疋’可確定或(以另一方式表述)鑑定目標Dn a 樣本中品系17053特有之DNA之存在。 ^ 提供一種足以用作DNA探針之DNA分子,其適用於測 定 '偵測或鑑定樣本中品系17053 DNA所特有且獨有之 DNA之存在或甚至不存在。該DNA分子含有沾卩ID N〇工 之至少15個鄰接核苷酸或其互補序列,或SEq ID N〇: 2之 • 至少15個鄰接核苷酸或其互補序列。 . 核酸擴增可藉由任何此項技術中已知之各種核酸擴增方 法(包括熱擴增方法)實現。米品系17053(包含品系17053的 代表性種子樣本以ATCC ρτΑ·9843寄存)之異源dna插入 ◎ 序列接口序列或側接序列之序列可藉由使用來源於本文 中所提供之序列的引子擴增該品系之該等序列、繼之對擴 增子或純系DNA進行標準DNA定序來進行驗證(必要時校 正)。 藉由該等方法所產生之擴增子可藉由多種技術進行债 測。一種方法為遺傳位元分析(Genetic Bit Anaiysis) (orov^^ , Nucleic Acid Res. 22:4167-4175, 1994) « 其中設計—種DNA募核苦酸,其與相鄰的側接基因體DNA 】所插人之dna序列交疊。將寡核_酸固定於微孔平 147377.doc •33- 201040274 板之孔中。在所關注之區域的熱擴增(一種引子用於所插 入之序列中而一種引子用於相鄰的側接基因體序列中)之 後,單鏈擴增子(熱擴增產物)可與所固定之寡核苷酸雜交 且充當模板用於單鹼基延伸反應,該反應係使用DNA聚合 酶及經標記的、特異於所預期之下一個鹼基之ddNTP進 行。可基於螢光或ELISA讀出結果。對螢光或其他信號之 偵測指示歸因於成功擴增、雜交及單鹼基延伸之插入/側 接序列之存在。 另種方法為如 Winge(Innov. Pharma. Tech. 00:1 8-24, 2000)所描述之焦磷酸測序技術。在該方法中,設計一種 券核皆酸,其與相鄰的基因體DNa及所插入之DNA接合序 列重疊。使該寡核苷酸與所關注之區域(一種引子於所插 入之序列中及一種引子於側接基因體序列中)的單鏈熱擴 增產物(單鏈擴增子)雜交,且在DNA聚合酶、ATP、硫酸 化酶(sulfurylase)、螢光素酶、腺苷三填酸雙雄酸酶 (apyrase)、腺皆 5’石粦酸硫酸(adenosine 5’ phosphor-sulfate) 及螢光素存在下培育。個別添加ddNTPs,此併入造成測到 光信號。光信號指示轉殖基因插入/側接序列之存在歸因 於成功擴增、雜交及單或多鹼基延伸。Madison WI (1987). Plants and seeds for use in the methods disclosed herein may also contain one or more other transgenic genes. The transgenic gene can be any nucleotide sequence encoding a protein or RNA molecule that confers the desired properties, including but not limited to: 3⁄4 strong insect resistance, increased water efficiency, increased yield performance , enhanced drought resistance, enhanced seed quality, improved nutritional quality and/or enhanced herbicide tolerance, the desired characteristics in # are measured relative to rice plants lacking the other transgenic genes. The method according to the invention is therefore particularly suitable for controlling weeds in the field while planting plants in order to produce seeds and/or plant parts comprising line m53 for agricultural or research purposes, selecting progeny comprising lines 17〇53 for plant breeding or research. (d) 'and produce progeny plants and species containing the line 17G53. Plants, progeny, species early, μ & i & \path to plant cells, plant parts (such as powder, ovule, English, flower, root) Or stem tissue and leaf) and commodities may be evaluated for DNA composition, gene expression and/or protein performance. The assessment can be performed by using standard methods such as PCR, Northern blotting, Southern analysis, Western blotting, immunoprecipitation, and ELISA, or by using the detection methods and/or detection kits provided herein. . And provide a method for the presence of materials unique to the rice bran mouth m 5 3 in the test sample. A method comprising detecting the presence of DNA specific to and derived from a rice cell, tissue or plant comprising line 17053. The method provides a template DNA sample to contact a primer pair that is capable of producing an amplicon of strain 17G53 under conditions suitable for thermal amplification, particularly comprising _(1) 147377.doc -30- 201040274 NO. 1 or SEQ ID NO: An amplicon of at least 15 contiguous nucleotides of 2 or a complement thereof. The amplicon is produced from a template DNA molecule derived from rice line 17053 'as long as the template DNA molecule incorporates a unique and unique nucleotide sequence as set forth in SEQ ID NO: 1 and SEQ ID NO: 2. The polymerase' amplicon selected for generating an amplicon may be single-stranded or double-stranded Ο Ο D N A or R N A . The method can be used to detect an amplicon molecule produced in any of the thermal amplification reactions, and to confirm that the nucleotide corresponding to SEQ ID N:: or SEQ ID NO: 2 or its complementary sequence in the amplicon sequence presence. Detecting the nucleotide corresponding to SEQ ID NO: 1 or SEQ ID NO. 2 or its complement in the amplicon, and determining and/or identifying the presence of the DNA specific to the line 17〇53 in the sample and thus Contains the presence of a biological material of line 17〇53. Another method for detecting samples consisting of materials derived from rice plants or rice plant tissues corresponds to SEQ ID n: 3 and π. NO. 4, the presence of DNA molecules. The method consists of: (1) extracting a DNA sample from a rice plant or a group of different rice plants, and (ii) contacting the DNA sample to exhibit at least 15 as shown in SEQ ID NO: 1 or SEq ID N〇:眶 probe molecules adjacent to the nucleus (4), (4) hybridization of the probe and brain sample under stringent hybridization conditions, and subsequent (iv) mapping of the hybridization line between the probe and the target DNA sample. Depending on the case, the detection of the hybridization composition in the 匪 sample identifies the presence of SEQ(1)n〇: 3 or 卿ι〇 NO. Alternatively, there is no hybridization identification sample in the absence of a gene transfer system or 'measure that a particular rice plant contains any of the sequences corresponding to SEQ ID NO: 1 or SEQ ID Ν〇: 2, or both, or complement each other The sequence 'W' the rice plant contains at least one 147377.doc-31 · 201040274 allele corresponding to line 17053. Thus, the presence of the nucleic acid molecules of the present invention can be detected by any well-known nucleic acid detection method such as polymerase chain reaction (PCR) or DNA hybridization using a nucleic acid probe. A strain-specific PCR assay is described, for example, by Taverniners et al. (J. Agric. Food Chem., 53: 3041-3052, 2005), which demonstrates the use of the gene-transforming maize lines Btll, Btl76 and GA21 and for A strain-specific tracking system for the mustard line RT73. In this study, line-specific primers and probes were designed based on the sequence of the genomic/transgenic junctions of each line. Gene-transplanting plant line-specific DNA detection methods are also described in U.S. Patent Nos. 6,893,826, 6,825,400, 6,740,488, 6,733,974, 6,689,880, 6,900,014 and 6,818,807. Provide a DNA detection kit. A kit of the type comprising at least one DNA molecule having a sufficient length contiguous nucleotide similar or complementary to SEQ ID NO: 3, SEQ ID NO: 5 or SEQ ID NO. 6 to serve as a source for specific detection of the sample A DNA primer or probe that is present in the DNA of the gene-transgenic rice line 17053. The DNA molecule detected by the kit contains at least 15 contiguous nucleotides as shown in SEQ ID NO: 1 or a complement thereof. Alternatively, the kit may contain at least one DNA molecule having a sufficient length contiguous nucleotide similar or complementary to SEQ ID NO: 4, SEQ ID NO: 5 or SEQ ID NO: 6, serving as a source for specific detection of biological samples. A DNA primer or probe that is present in the DNA of the gene-transgenic rice line 1 7053. The DNA molecule detected by the kit contains at least 15 contiguous nucleotides as shown in SEQ ID NO: 2 or a complement thereof. 147377.doc -32- 201040274 An alternative kit employing a primer pair that contacts a target DNA sample as described above, followed by amplification sufficient to produce at least 15 contiguous nucleotides comprising SEQ ID NO: 2 or complementary sequences thereof The method of the nucleic acid amplification reaction of the enhancer. Detection of the amplicon and determination of the presence of not less than 15 contiguous nucleotides or their complements of the sequence RSEQ ID NO: 1 or SEQ ID NO: 2 of the amplicon can be determined or (Expressed in another way) to identify the presence of DNA specific to line 17053 in the target Dn a sample. ^ Provide a DNA molecule sufficient for use as a DNA probe that is suitable for the determination of 'detecting or identifying the presence or absence of DNA unique and unique to line 17053 DNA in a sample. The DNA molecule comprises at least 15 contiguous nucleotides of the ID N complex or a complement thereof, or SEq ID N〇: 2 of at least 15 contiguous nucleotides or a complement thereof. Nucleic acid amplification can be achieved by any of a variety of nucleic acid amplification methods known in the art, including thermal amplification methods. The heterologous DNA inserted into the rice line 17053 (including a representative seed sample of line 17053 registered with ATCC ρτΑ·9843) can be amplified by using primers derived from the sequences provided herein. The sequences of the line, followed by standard DNA sequencing of the amplicon or pure line DNA, are verified (corrected if necessary). The amplicons produced by these methods can be tested by a variety of techniques. One method is Genetic Bit Anaiysis (orov^^, Nucleic Acid Res. 22:4167-4175, 1994) « One of the designs - DNA nucleus, which is adjacent to the flanking genomic DNA 】 The inserted DNA sequence overlaps. The oligo-acid is immobilized in the wells of the microwell 147377.doc •33- 201040274 plate. After thermal amplification of the region of interest (a primer for the inserted sequence and an primer for the adjacent flanking sequence), the single-stranded amplicon (thermal amplification product) can The immobilized oligonucleotide hybridizes and serves as a template for a single base extension reaction using DNA polymerase and labeled ddNTPs specific for the next base expected. The results can be read based on fluorescence or ELISA. Detection of fluorescence or other signals is due to the presence of inserts/flanking sequences for successful amplification, hybridization, and single base extension. Another method is pyrosequencing technology as described by Winge (Innov. Pharma. Tech. 00: 1 8-24, 2000). In this method, a nucleus acid is designed which overlaps with the adjacent gene DNa and the inserted DNA joining sequence. Hybridizing the oligonucleotide to a single-stranded thermal amplification product (single-stranded amplicon) of the region of interest (a primer in the inserted sequence and a primer in the flanking sequence), and in the DNA Polymerase, ATP, sulfurylase, luciferase, apyrase, adenosine 5' phosphor-sulfate, and luciferin Cultivate in existence. Individual ddNTPs were added, which resulted in the detection of an optical signal. The light signal indicates the presence of the transgene insertion/flanking sequence due to successful amplification, hybridization, and single or multiple base extension.

Chen 等人(Genome Res. 9:492-498,1999)所描述之榮光 偏振為一種可用於偵測擴增子之方法。使用該方法設計一 種募核苷酸,其與基因體側接DNA及所插入之DNA接合序 列重疊。使該募核苷酸與所關注之區域(一種引子於所插 入之DNA中及一種引子於側接基因體DNA序列中)的單鏈 147377.doc -34- 201040274 擴增產物雜交,且在DNA聚合酶及螢光標記之ddNTP存在 下培育。單鹼基延伸導致ddNTP之併入。該併入可使用螢 光計測量為偏振之變化。偏振之變化指示轉殖基因插入/ 側接序列之存在歸因於成功擴增、雜交及單鹼基延伸。 TAQMAN®(PE Applied Biosystems, Foster City, CA)亦 可使用製造商提供之說明書用以偵測及/或定量DNA序列 之存在。簡言之,設計一種FRET寡核苷酸探針,其與基 因體側接DNA及所插入之DNA接合序列重疊。在熱穩定聚 合酶及dNTP存在下,使FRET探針及擴增引子(一種引子於 所插入之DNA序列中及一種引子於側接基因體序列中)循 環。FRET探針之雜交導致FRET探針上螢光部分的裂解及 釋放而遠離淬滅部分。螢光信號指示歸因於成功擴增及雜 交之側接/轉殖基因插入序列之存在。 人們已描述用於序列偵測之分子信標,如Tyangi等人 (Nature Biotech. 14:303-308, 1996)中所述。簡言之,設計 一種FRET寡核苷酸探針,其與側接基因體DNA及所插入 之DNA接合序列交疊。FRET探針之獨特結構致使其含有 保持螢光部分與淬滅部分緊密接近之二級結構。在熱穩定 聚合酶及dNTP存在下,使FRET探針及擴增引子(一種引子 於所插入之DNA序列中而一種引子於側接基因體序列中) 循環。在成功擴增之後,FRET探針與目標序列之雜交導 致探針二級結構之移除及螢光部分與淬滅部分之空間分 離,致使產生螢光信號。螢光信號指示歸因於成功擴增及 雜交之側接/轉殖基因插入序列之存在。此項技術中已知 147377.doc -35- 201040274 之其他方法可用於實踐本發明之方法,諸如:微流體技術 (參見例如美國專利公開案2006068398及美國專利第 6,544,734號)’其提供分離及擴增DNA樣本之方法及裝 置;偵測及測量特異性DNA分子之光學染料(參見例如 WO/05017181);包含用以偵測DNA分子之電子感測器之 奈米管裝置(參見例如WO/06024023);及/或結合隨後可價 測之特異性DNA分子之奈米珠粒。 可使用本文中所揭示之組合物及此項技術中已知之Dna 偵測方法來開發DNA偵測套組。該等套組適用於識別樣本 中之品系1 7053且可應用於含有適當品系DNA之稻米植物 之育種方法。套組可含有類似或互補於SEQ ID N〇: “6之 DNA引子或探針或其片段。本發明之套組及偵測方法因此 尤其適用於識別米品系〗7053、挑選包含品系】7〇53之植物 變種或雜交種、偵測樣本中來源於米品系】7〇53之之 存在及針對米品系17053或包含米品系17〇53之植物、植物 4分或商品之存在及/或不存在來監測樣本。 包括以下實例來說明本發明某些較佳實施例之實例。熟 習此項技術者應瞭解以下實例中所揭示之技術代表本發明 之發明者已發現在本發明之實踐中表現良好之方法,且因 此可視為構成其實踐之較佳模式之實例。然而,熟習此項 技術者根據本發明之揭示應瞭解,可在所揭示之特定實施 例中進行許多改變而仍在不,_本發明之精神及範嘴的情 況下獲得相似或類似結果。 實例 147377.doc • 36 - 201040274 實例1 :米之轉化及品系選擇 本實例描述如何形成基因轉殖米品系及如何選擇品系 17053。基因轉殖耐受草甘膦之品系17053係藉由以圖1所 示之轉殖基因DNA片段(其序列陳列於SEQ ID NO: 5中)進 行粒子槍介導之米細胞轉化而產生。轉殖基因DNA片段包 含表現卡匣,該表現卡匣包含來源於包含雙強化子之花椰 菜花葉病毒(Cauliflower Mosaic Virus)之啟動子(P-CaMV.e35S)分子,可操作地連接至來源於米肌動蛋白1基 因之内含子分子(I-Os.Actl)、可操作地連接至編碼葉綠體 轉運肽(CTP2,擬南芬i/za/z_fl«a)EPSPS)之 DNA分子、可操作地連接至編碼草甘膦抗性EPSPS (AGRtu.EPSPS:CP4)之DNA分子、可操作地連接至來源於 農桿腫瘤菌(JgrokcieWwm 胭脂驗合成酶基因 之3'轉錄終止區DNA分子(T-AGRtu.nos)。 米變種M-202之外植體首先使用粒子槍法以四種表現卡 匣中之一者轉化。隨後在含有草甘膦之培養基上選擇經轉 化之細胞且使存活細胞再生成植物。轉化過程產生928株 R0植物,其中各R0植物為獨立、個別之品系。在R0期藉 由PCR及南方分析篩選該928個品系以排除多複本及/或分 子複雜之品系。在PCR分析中,終點TAQMAN®檢定最初 與所提取之DNA—起使用。基於PCR篩選,選擇565個R0 品系。該565個R0品系隨後藉由南方分析篩選。在南方分 析中,自米組織提取DNA,以Ncol及EcoRI或SspI消化, 且使用南方墨點雜交分析技術及互補於CaMV 35S啟動子 147377.doc -37- 201040274 及EPSPS編碼序列之放射性DNA探針雜交。該等資料用以 確定插入米基因體中之轉殖基因卡匣之複本數且選擇240 個具有單插入之R0品系。 該240個所選品系隨後晉升至生長箱進行表型及受精率 分析以便識別非正常型(off-type)植物。基於生長箱表型及 受精率篩選,選擇1 70個品系得到晉升。該1 70個R1品系隨 後在生長箱中針對草甘膦耐受性進行篩選。該等植物亦藉 由二次南方分析對完整轉殖基因插入進行分析。使用自該 等分析收集之資料,選擇1 9個品系得到晉升。隨後,將該 等品系中13個之R2植物晉升至田間試驗。收集植物關於多 個特徵的田間試驗資料,13個品系中每一者之植物收集一 個生長季,且其中5個品系收集兩個_生長季。在第一年田 間試驗中,在多次重複田間試驗設計中,以最少3個位置 測試13個品系的草甘膦耐受性及農藝等同性。結果呈現於 表1中。 表1 :第一季田間試驗計劃之田間試驗結果 參數 品系 A 17053 B C D E F G Η I J Κ L 功效 植物性耐受性 (Vegetative Tolerance) 是 是 是 是 是 是 是 是 是 是 是 是 是 產量 是 是 是 是 否 是 是 是 是 是 否 是 是 受精率、表 型、成熟度 否 是 是 是 是 是 否 是 是 是 是 是 是 農藝 產量 是 是 是 是 是 是 是 是 是 是 是 是 是 147377.doc -38- 201040274 受精率、表 型、成熟度 是 是 是 是 是 是 是 是 是 是 是 是 是 是否通過田間 試驗 否 是 是 是 否 是 否 是 是 是 否 是 是 隨後使用該等資料選擇五個領先品系晉升至第二年田間 試驗。在該等第二年田間試驗中,在6個位置的多次重複 田間試驗設計中,測試五個領先品系的草甘膦耐受性及農 藝等同性。結果呈現於表2中。 表2 :第二季田間試驗計劃之田間試驗結果 參數 品系 17053 B C E G 功效 植物性财受性 是 是 是 是 是 產量 是 是 是 是 是 受精率、表型、成熟度 是 是 是 是 是 農藝 產量 是 是 是 是 是 受精率、表型、成熟度 是 是 是 是 是 是否通過田間試驗 是 是 是 是 是 〇 在兩季的功效試驗中,在4-6片葉之生長期以3磅酸當量/ 英畝(lb ae/ac)之量的草甘膦(其為典型商業比率之兩倍)或 4.5 lb ae/ac之量的草甘膦(其為典型商業比率之三倍)處理 植物。草甘膦植物性耐受性係測量為植物性損傷 (vegetative injury)且草甘膦生殖性耐受性係測量為產量及 受精率(%)。使用來自該等試驗之資料選擇品系1 7053。品 系17053顯示在3 lb ae/ac或4.5 lb ae/ac下皆無植物性損傷 且在以草甘膦處理後,以噸/英畝(T/ac)之米粒測量,無產 量損失。 147377.doc -39- 201040274 實例2 :分離相鄰於所插入之DNA的米染色體序列 使用快速高pH/高鹽溶解方案分離用於所有PCR反應之 米基因體DNA。在該方案中,藉由渦旋使約0.1公克凍乾 粉狀葉組織與600 ul(微升)溶解緩衝液(100 mM Tris、1 Μ KC1、10 mM EDTA,pH 9.5)混合,隨後在 65°C下培育 45-60分鐘。接著,使管再次渦旋且添加200 ul沈澱缓衝液(5 Μ乙酸鉀,pH 7.0),再次渦旋且離心。將600 ul DNA溶液 之等分試樣轉移至乾淨試管且添加500 ul冰冷的異丙醇使 DNA沈澱。離心後,以70%乙醇洗滌DNA離心塊,風乾且 使DNA再懸浮於250 ul水中。 對1 7053品系使用基本上如Liu等人(Plant Journal 8: 457-463,1995)中所述之TAIL-PCR方案獲得相鄰於轉殖基因插 入點之米基因體DNA之延伸。為識別側接基因體DNA,在 側接接合點附近設計兩組各兩個的巢式基因體步移引子 (nested genome-walking primer)。一組、經設計成自經整合 之表現卡匣的5'末端步移而另一組經設計成自經整合之表 現卡匣的3’末端步移。5’ TAIL-PCR之引子在第1輪為引子 SQ1871(SEQ ID NO: 12)且在第 2 輪為引子 SQ1869(SEQ ID NO: 13)。3,TAIL-PCR之引子在第 1輪為引子SQ1 875(SEQ ID NO: 10)且在第 2輪為引子 SQ1880(SEQ ID NO: 14)。The luminescence polarization described by Chen et al. (Genome Res. 9: 492-498, 1999) is a method that can be used to detect amplicons. Using this method, a nucleotide is designed which overlaps with the flank of the genomic DNA and the inserted DNA ligating sequence. Hybridization of the raised nucleotide with the single-stranded 147377.doc-34-201040274 amplification product of the region of interest (a primer in the inserted DNA and a primer in the flanking DNA sequence), and in the DNA Incubation in the presence of polymerase and fluorescently labeled ddNTPs. Single base extension results in the incorporation of ddNTPs. This incorporation can be measured as a change in polarization using a fluorometer. A change in polarization indicates the presence of a transgene insertion/flank sequence due to successful amplification, hybridization, and single base extension. TAQMAN® (PE Applied Biosystems, Foster City, CA) may also use the instructions provided by the manufacturer to detect and/or quantify the presence of DNA sequences. Briefly, a FRET oligonucleotide probe was designed which overlaps with the flanked DNA of the gene and the inserted DNA junction sequence. The FRET probe and the amplification primer (a primer in the inserted DNA sequence and one primer in the flanking gene sequence) are circulated in the presence of a thermostable polymerase and dNTP. Hybridization of the FRET probe results in cleavage and release of the fluorescent moiety on the FRET probe away from the quenching moiety. Fluorescent signals indicate the presence of flanking/transgenic gene insertion sequences due to successful amplification and hybridization. Molecular beacons for sequence detection have been described as described in Tyangi et al. (Nature Biotech. 14: 303-308, 1996). Briefly, a FRET oligonucleotide probe was designed which overlaps with the flanking DNA and the inserted DNA junction sequence. The unique structure of the FRET probe results in a secondary structure that maintains the fluorescent moiety in close proximity to the quenching moiety. The FRET probe and the amplification primer (a primer in the inserted DNA sequence and one primer in the flanking gene sequence) are circulated in the presence of a thermostable polymerase and dNTP. Upon successful amplification, hybridization of the FRET probe to the target sequence results in removal of the probe secondary structure and spatial separation of the fluorescent portion from the quenching moiety, resulting in a fluorescent signal. The fluorescent signal indicates the presence of a flanking/transgenic gene insertion sequence due to successful amplification and hybridization. Other methods are known in the art to be used in the practice of the present invention, such as: microfluidic technology (see, for example, U.S. Patent Publication No. 2006068398 and U.S. Patent No. 6,544,734), which provides separation and expansion. Method and apparatus for increasing DNA samples; optical dyes for detecting and measuring specific DNA molecules (see, for example, WO/05017181); nanotube devices comprising electronic sensors for detecting DNA molecules (see, for example, WO/06024023) And/or a nanobead of a specific DNA molecule that is subsequently measurable. DNA detection kits can be developed using the compositions disclosed herein and the Dna detection methods known in the art. These kits are suitable for breeding methods for identifying lines 1 7053 in a sample and for applying to rice plants containing appropriate strains of DNA. The kit may contain a DNA primer or probe or a fragment thereof that is similar or complementary to SEQ ID N: "6. The kit and detection method of the present invention are therefore particularly suitable for identifying rice lines 7053, selecting inclusion lines] 7〇 Plant variety or hybrid of 53, detected in the sample from the presence of the rice line 7〇53 and the presence and/or absence of the plant line, plant 4, or commodity for the rice line 17053 or the rice line containing 17〇53 The following examples are included to illustrate examples of certain preferred embodiments of the invention. Those skilled in the art will appreciate that the technology disclosed in the examples below represents that the inventors of the present invention have found that they have performed well in the practice of the present invention. The method, and thus may be considered as an example of a preferred mode of practice. However, it will be apparent to those skilled in the <RTIgt; Similar or similar results were obtained in the context of the spirit and scope of the present invention. Example 147377.doc • 36 - 201040274 Example 1: Transformation of rice and selection of strains This example describes how to form a gene transfer The colony line and how to select the line 17053. The gene-tolerant glyphosate-tolerant line 17053 is subjected to particle gun by using the DNA fragment of the gene shown in Figure 1 (the sequence of which is shown in SEQ ID NO: 5). The rice gene of the transgenic gene contains a representational cassette containing a promoter derived from Cauliflower Mosaic Virus (P-CaMV.e35S) containing a double fortifier. , operably linked to an intron molecule derived from the rice actin 1 gene (I-Os. Actl), operably linked to a chloroplast transit peptide (CTP2, iguanafen i/za/z_fl«a) DNA molecule of EPSPS), operably linked to a DNA molecule encoding glyphosate-resistant EPSPS (AGRtu.EPSPS: CP4), operably linked to a tumor-derived Agrobacterium tumefaciens (3 of Jgrokcie Wwm 胭 验 合成 synthase gene) Transcription termination region DNA molecule (T-AGRtu.nos). The rice variety M-202 explants were first transformed by particle gun method in one of four performance cassettes. Subsequently, the transformation was selected on a medium containing glyphosate. The cells and regenerate the viable cells. The process yielded 928 R0 plants, each of which was an independent, individual line. The 928 lines were screened by PCR and Southern analysis in the R0 phase to exclude multiple copies and/or molecular complex lines. In PCR analysis, the endpoint The TAQMAN® assay was initially used with the extracted DNA. Based on PCR screening, 565 R0 lines were selected. The 565 R0 lines were subsequently screened by Southern analysis. In the Southern analysis, DNA was extracted from rice tissue to Ncol and EcoRI. Or SspI digestion, and hybridization using radioactive DNA probes complementary to the CaMV 35S promoter 147377.doc-37-201040274 and EPSPS coding sequences using Southern blot hybridization analysis techniques. The data were used to determine the number of copies of the transgenic gene cassette inserted into the rice genome and to select 240 R0 lines with single insertion. The 240 selected lines were then promoted to growth chambers for phenotypic and fertilization analysis to identify off-type plants. Based on the growth box phenotype and fertilization rate screening, 1 70 lines were selected for promotion. The 1 70 R1 lines were then screened for glyphosate tolerance in a growth chamber. These plants were also analyzed for complete transgenic gene insertion by secondary Southern analysis. Using the data collected from these analyses, 19 lines were selected for promotion. Subsequently, 13 of the R2 plants in these lines were promoted to field trials. Plant field data on multiple features were collected and plants from each of the 13 lines were collected for one growing season, and five of them collected two growing seasons. In the first year of the field trial, glyphosate tolerance and agronomic equivalence of 13 lines were tested in a minimum of 3 positions in multiple replicate field trial designs. The results are presented in Table 1. Table 1: Field test results of the first season field trial plan Parameter line A 17053 BCDEFG Η IJ Κ L Effect Vegetative Tolerance Is it yes or yes is it yes or is it yield is yes or no Is it whether it is fertilization rate, phenotype, maturity? Is it whether it is yes or not? Is it agronomic yield? Is it yes or yes Yes Yes Yes Yes Yes Yes 147377.doc -38- 201040274 Fertilization Whether the rate, phenotype, maturity is whether it is yes or no, whether it is through field trials, whether it is whether it is whether or not it is subsequently used to select five leading lines to promote to the second year of the field. test. In these second year field trials, glyphosate tolerance and agronomic equivalence of five leading lines were tested in multiple replicate field trial designs at six locations. The results are presented in Table 2. Table 2: Field test results of the second season field trial plan Parameter line 17053 BCEG Efficacy Plant plantability is whether the yield is yes or not, the phenotype, the maturity is the agronomic yield Yes, is the fertilization rate, phenotype, maturity, whether it is through the field test, whether it is in the two seasons of efficacy test, in the growth period of 4-6 leaves with 3 pounds of acid equivalent / Plants are treated with acre (lb ae/ac) of glyphosate (which is twice the typical commercial ratio) or 4.5 lb ae/ac of glyphosate, which is three times the typical commercial ratio. The glyphosate plant tolerance was measured as a vegetative injury and the glyphosate reproductive tolerance was measured as yield and fertilization rate (%). Lines 1 7053 were selected using data from these trials. Line 17053 showed no vegetative damage at 3 lb ae/ac or 4.5 lb ae/ac and was measured in ton per acre (T/ac) of rice after treatment with glyphosate with no yield loss. 147377.doc -39- 201040274 Example 2: Isolation of rice chromosomal sequences adjacent to inserted DNA The genomic DNA for all PCR reactions was isolated using a rapid high pH/high salt lysis protocol. In this protocol, about 0.1 gram of lyophilized powdered leaf tissue is mixed with 600 ul (microliter) of lysis buffer (100 mM Tris, 1 Μ KC1, 10 mM EDTA, pH 9.5) by vortexing, followed by 65 Incubate at °C for 45-60 minutes. Next, the tube was vortexed again and 200 ul of precipitation buffer (5 Μ potassium acetate, pH 7.0) was added, vortexed again and centrifuged. An aliquot of 600 ul of DNA solution was transferred to a clean tube and 500 ul of ice-cold isopropanol was added to precipitate the DNA. After centrifugation, the DNA pellet was washed with 70% ethanol, air dried and the DNA resuspended in 250 ul of water. The extension of the 1 7053 line was obtained using a TAIL-PCR protocol as described in Liu et al. (Plant Journal 8: 457-463, 1995) to obtain DNA of the genomic DNA adjacent to the insertion point of the transgene. To identify flanking genomic DNA, two sets of two nested genome-walking primers were designed in the vicinity of the flanking junction. One set is designed to move from the 5' end of the integrated performance cassette and the other set is designed to move from the 3' end of the integrated performance cassette. The primer for 5' TAIL-PCR is the primer SQ1871 (SEQ ID NO: 12) in the first round and the primer SQ1869 (SEQ ID NO: 13) in the second round. 3. The primer for TAIL-PCR is the primer SQ1 875 (SEQ ID NO: 10) in the first round and the primer SQ1880 (SEQ ID NO: 14) in the second round.

在各側接區域之識別中,使兩個巢式引子與如Liu等人 (Plant Journal 8: 457-463,1995)中所述之較短隨機簡併 (AD)引子一起用於連續PCR反應。在5'及3’側接序列之第1 輪PCR中,如表3中所詳述來建立相應PCR反應。在MJ 147377.doc -40- 201040274In the identification of each flanking region, two nested primers were used in conjunction with a shorter random degenerate (AD) primer as described in Liu et al. (Plant Journal 8: 457-463, 1995) for continuous PCR reactions. . In the first round of PCR of the 5' and 3' flanking sequences, the corresponding PCR reactions were established as detailed in Table 3. At MJ 147377.doc -40- 201040274

Engine溫度循環儀中使用表4中陳列之循環參數以及預設 勻變速度設定來進行該等反應。 表3 :米品系17053之第1輪TAIL-PCR反應The engine temperature cycler uses the cycle parameters shown in Table 4 and the preset ramp rate settings to perform these reactions. Table 3: The first round of TAIL-PCR reaction of rice line 17053

步驟 試劑 量 備註 1 18兆歐水 添加至50 ul最 終體積 - 2 1〇χ反應緩衝液 (含 MgCl2) 5.0 ul lx緩衝液最終濃度,1.5 mM MgCl2最終濃度 3 10 mM dATP、dCTP、dGTP 及dTTP之溶液 1.0 ul 200 μΜ各dNTP最終濃度 4 引子SQ1871(5’側接)或引子 SQ1875(3’側接)(再懸浮於 1 χΤΕ緩衝液或18兆歐水中至 ΙΟμΜ之濃度) 1.0 ul 0.2 μΜ最終濃度 5 隨機簡併引子ADI、AD2或 AD3(再懸浮於1 χΤΕ緩衝液 或18兆歐水中至1〇〇 μΜ之濃 度) 1.5 ul 3.0 μΜ最終濃度 建議使用所有三種隨機簡併引子 以獲得最大成功率 6 REDTaqDNA聚合酶 (1單位/ul) 2·5 ul(建議在 下一步驟之前 轉換吸移管) 2.5單位/反應 7 所提取之DNA(模板): 目標DNA 陽性對照DNA 非基因轉殖DNA 50-200 ng基因 體DNA 1) ·建議使用高品質DNA作為模 板以增加成功率 2) .建議使用來自其侧接序列已使 用該方法成功分離的基因轉殖品 系之陽性對照DNA 147377.doc -41 - 201040274 表4:第1輪TAIL-PCR熱循環條件 循環編號 設置 1 94〇C 2分鐘 5 94〇C 30秒 62〇C 1分鐘 72〇C 2分30秒 1 94〇C 30秒 25〇C 3分鐘 經3分鐘勻變至72〇c(〇 2〇c/秒) 72°C 2 分 3〇ίΨ 15 94〇C 10秒 68〇C 1分鐘 72〇C 2分30秒 94〇C 10秒 68〇C 1分鐘 72〇C 2分30秒 94〇C 10秒 44〇C 1分鐘 72〇C 2分30秒 1 72〇C 5分鐘 將第1輪TAIL-PCR之等分試樣用於如表5中所詳述之第1 輪TAIL-PCR。在MJ Engine溫度循環儀中使用表6中陳列之 循環參數以及預設勻變速度設定來進行該等反應。 表5:第2輪TAIL-PCR反應 步驟 試劑 量 備註 1 18兆歐水 添加至50 ill 最終體積 - 2 l〇x反應緩衝液 (含 MgCl2) 5.0 ul 1χ緩衝液最終濃度,1.5 mMMgCl2最终濃度 3 10 mM dATP、dCTP、dGTP 及 dTTP之溶液 1.0 ul 200 μΜ之各dNTP最終濃度 147377.doc -42- 201040274 4 引子SQ18690側接)或引子 SQ1880(3'側接)(再懸浮於1 χΤΕ緩 衝液或18兆歐水中至10 μΜ之濃度) 1.0 ul 0.2 μΜ最終濃度 5 隨機簡併引子(再懸浮於1 xTE缓衝 液或18兆歐水中至100 μΜ之濃度) 1.0 ul 2.0 μΜ最終濃度 6 REDTaq DNA聚合酶 (1單位/ul) 2.5 ul 2.5單位/反應(建議在下一步 驟之前轉換吸移管) 7 1:100稀釋之第1輪TAIL-PCR反應 物 5.0 ul 表6:第2輪TAIL-PCR熱循環條件 循環編號 設置 1 94。。 2分鐘 12 94〇C 10秒 64〇C 1分鐘 72〇C 2分30秒 94〇C 10秒 64〇C 1分鐘 72〇C 2分30秒 94〇C 10秒 44〇C 1分鐘 72〇C 2分30秒 10 94〇C 15秒 44〇C 1分鐘 72°C 2分30秒 1 72〇C 5分鐘Step Reagent amount Remarks 1 18 MΩ water added to 50 ul final volume - 2 1〇χ Reaction buffer (containing MgCl2) 5.0 ul lx buffer final concentration, 1.5 mM MgCl2 final concentration 3 10 mM dATP, dCTP, dGTP and dTTP Solution 1.0 ul 200 μΜ each dNTP final concentration 4 primer SQ1871 (5' side) or primer SQ1875 (3' side) (resuspended in 1 χΤΕ buffer or 18 mega ohms to ΙΟμΜ) 1.0 ul 0.2 μΜ Final concentration 5 Random degenerate primers ADI, AD2 or AD3 (resuspended in 1 χΤΕ buffer or 18 mega ohms water to 1 〇〇μΜ concentration) 1.5 ul 3.0 μΜ final concentration It is recommended to use all three random degenerate primers for maximum Success rate 6 REDTaq DNA polymerase (1 unit / ul) 2 · 5 ul (recommended to convert the pipette before the next step) 2.5 units / reaction 7 extracted DNA (template): target DNA positive control DNA non-gene transgenic DNA 50 -200 ng of genomic DNA 1) · It is recommended to use high-quality DNA as a template to increase the success rate. 2) It is recommended to use the positive control DNA from the gene-transferred line whose flank sequence has been successfully isolated using this method. Doc -41 - 201040274 Table 4: 1st round of TAIL-PCR thermal cycling conditions Cycle number setting 1 94〇C 2 minutes 5 94〇C 30 seconds 62〇C 1 minute 72〇C 2 minutes 30 seconds 1 94〇C 30 seconds 25〇C 3 minutes, 3 minutes to 72〇c (〇2〇c/sec) 72°C 2 points 3〇ίΨ 15 94〇C 10 seconds 68〇C 1 minute 72〇C 2 minutes 30 seconds 94〇 C 10 seconds 68〇C 1 minute 72〇C 2 minutes 30 seconds 94〇C 10 seconds 44〇C 1 minute 72〇C 2 minutes 30 seconds 1 72〇C 5 minutes The first round of TAIL-PCR aliquot For the first round of TAIL-PCR as detailed in Table 5. These reactions were performed in the MJ Engine temperature cycler using the cycle parameters shown in Table 6 and the preset ramp rate settings. Table 5: Stage 2 TAIL-PCR reaction step Reagent amount Remarks 1 18 MΩ water added to 50 ill Final volume - 2 l〇x reaction buffer (containing MgCl2) 5.0 ul 1χ buffer final concentration, 1.5 mMMgCl2 final concentration 3 10 mM dATP, dCTP, dGTP and dTTP solutions 1.0 ul 200 μΜ each dNTP final concentration 147377.doc -42- 201040274 4 primer SQ18690 side) or primer SQ1880 (3' side) (resuspended in 1 χΤΕ buffer) Or a concentration of 18 megohms to 10 μΜ) 1.0 ul 0.2 μΜ final concentration 5 random degenerate primer (resuspended in 1 x TE buffer or 18 meg water to 100 μΜ) 1.0 ul 2.0 μΜ final concentration 6 REDTaq DNA Polymerase (1 unit / ul) 2.5 ul 2.5 units / reaction (recommended to switch the pipette before the next step) 7 1:100 dilution of the first round of TAIL-PCR reactant 5.0 ul Table 6: The second round of TAIL-PCR heat The cycle condition cycle number is set to 1 94. . 2 minutes 12 94〇C 10 seconds 64〇C 1 minute 72〇C 2 minutes 30 seconds 94〇C 10 seconds 64〇C 1 minute 72〇C 2 minutes 30 seconds 94〇C 10 seconds 44〇C 1 minute 72〇C 2 minutes 30 seconds 10 94 〇 C 15 seconds 44 〇 C 1 minute 72 ° C 2 minutes 30 seconds 1 72 〇 C 5 minutes

為觀測TAIL-PCR擴增子,使第2輪反應之等分試樣在 2.0%瓊脂糖凝膠上跑膠且以溴化乙錠染色。另外,將第2 輪TAIL-PCR之等分試樣送達Monsanto基因體定序中心定 序。使用Monsanto專屬之側接序列應用(Flanking Sequence Application)序列分析軟體進行序列分析。PCR引子經設計 以確認在第2輪TAIL-PCR反應之定序結果中所觀測到之基 147377.doc -43- 201040274 因體側接序列。對於品系17053之5'基因體側接序列係由使 用引子對 SQ3626(SEQ ID NO: 15)與 SQ1869(SEQ ID NO: 13)之PCR反應來確認。對於品系17053之3’基因體側接序 列係由使用引子對SQ3 623(SEQ ID NO: 11)與 SQ1875(SEQ ID NO: 10)之PCR反應來確認。 實例3 :品系特異性終點TAQMAN®檢定 本實例描述為識別樣本中之品系1 7 0 5 3所開發之〇〇糸特 異性終點TAQMAN®熱擴增法。適用於該方法之條件實例 描述於表7及表8中。適用於該方法之DNA分子為例如引子 SQ4194(SEQ ID NO: 7)與 SQ4191(SEQ ID NO: 8)以及 6FAMtm標記之寡核苷酸探針PB1494(SEQ ID NO: 9)。可 基於本文中所提供之轉殖基因插入序列及/或側接序列之 序列來設計其他探針及引子。SQ4194(SEQ ID NO: 7)及 SQ4191(SEQ ID NO: 8)當與 PB1494(SEQ ID NO: 9)—起用 於該等反應方法時產生鑑定品系17053 DNA之DNA擴增 子。該分析之對照物包括來自含有品系17053 DNA之米的 陽性對照、來自非基因轉殖米之陰性對照及不含有模板 DNA之陰性對照。 該等檢定經優化以供Applied Biosystems GeneAmp PCR System 9700或 Stratagene Robocycler、MJ Engine、Perkin-Elmer 9700或 Eppendorf Mastercycler Gradient溫度循環儀 使用。其他方法及設備為熟習此項技術者所已知將適用於 產生識別生物樣本中的品系17053 DNA之擴增子之彼等 者。分析樣本時,可使用表7及表8中陳列之循環參數。在 147377.doc -44- 201040274To observe the TAIL-PCR amplicon, an aliquot of the second round of reaction was run on a 2.0% agarose gel and stained with ethidium bromide. In addition, an aliquot of the second round of TAIL-PCR was sent to the Monsanto genomic sequencing centering sequence. Sequence analysis was performed using Monsanto's proprietary Flanking Sequence Application sequence analysis software. The PCR primers were designed to confirm the base observed in the sequencing results of the second round of the TAIL-PCR reaction. 147377.doc -43- 201040274 Factor-directed sequence. The 5' genomic flanking sequence for line 17053 was confirmed by PCR reaction using primer pair SQ3626 (SEQ ID NO: 15) and SQ1869 (SEQ ID NO: 13). The 3' genobody flanking sequence for line 17053 was confirmed by PCR reaction using primer pair SQ3 623 (SEQ ID NO: 11) and SQ1875 (SEQ ID NO: 10). Example 3: Line-specific endpoint TAQMAN® assay This example describes the TAQMAN® thermal amplification method for the identification of the specific end point of the strain developed in the sample 1 7 5 5 3 . Examples of conditions suitable for this method are described in Tables 7 and 8. Suitable DNA molecules for this method are, for example, the primers SQ4194 (SEQ ID NO: 7) and SQ4191 (SEQ ID NO: 8) and the 6FAMtm-labeled oligonucleotide probe PB1494 (SEQ ID NO: 9). Other probes and primers can be designed based on the sequences of the transgene insertion sequences and/or flanking sequences provided herein. SQ4194 (SEQ ID NO: 7) and SQ4191 (SEQ ID NO: 8), when used in conjunction with PB1494 (SEQ ID NO: 9) for such reaction methods, produce a DNA amplicon of the identified line 17053 DNA. Controls for this analysis included a positive control from rice containing line 17053 DNA, a negative control from non-genegenic rice, and a negative control without template DNA. These assays were optimized for use with the Applied Biosystems GeneAmp PCR System 9700 or Stratagene Robocycler, MJ Engine, Perkin-Elmer 9700 or Eppendorf Mastercycler Gradient. Other methods and devices are known to those skilled in the art that will be suitable for generating the amplicon of line 17053 DNA in a biological sample. When analyzing samples, the cycle parameters shown in Tables 7 and 8 can be used. At 147377.doc -44- 201040274

Eppendorf Mastercycler Gradient或 MJ Engine 中進行熱擴增 時,溫度循環儀應在計算模式下運行。在perkin_Elmer 9700中進行熱擴增時,溫度循環儀應設置為最大勻變速 度。 表7:米品系17053特異性终點TAQMAN® 步驟 試劑 體積 備註 1 18兆歐水 調整為10 μΐ之 最終體積 2 2x通用標準混合物(Universal Master Mix)(dNTP、 酶、緩衝液) 5.0 μΐ 1χ最終濃 度 3 引子-1及引子-2混合物(再懸浮於18兆歐水中至各 引子20uM之濃度) 實例:在微離心管中,應添加以下來達到20 uM最 終濃度下的500 μΐ : 100 μΜ濃度之100 μΐ引子 SQ4194(SEQ ID NO: 7) ; 100 μΜ濃度之 100 μΐ引子 SQ4191(SEQIDNO:8) ; 300μ118兆歐水 0.5 μΐ 1.0 μΜ 最 終濃度 4 品系 6-FAM™ MGB探針PB1494(SEQ ID NO: 9)(再 懸浮於18兆歐水中至10 μΜ之濃度) 0.2 μΐ 0.2 μΜ 最 終濃度 5 所提取之DNA(模板&gt; : 1. 待分析之葉樣本 2. 陰性對照(非基因轉殖DNA) 3. 陰性水對照(無模板) 4. 陽性對照17053 DNA 3.0 μΐ 表8:終點TAQMAN®熱循環儀條件 循環編號 設置 1 50°C 2分鐘 1 95〇C 1〇分鐘 10 95〇C 15秒 64t 1分鐘 147377.doc • 45- 201040274 -l°c/循環 30 95 °C 15秒 54V 1分鐘 1 10°C 永久 實例4 :在育種活性方面識別品系17053 本實例描述如何可使用包含品系1 7053之米在具有任何 育種活性的子代内識別品系1 7053。使用DNA品系引子對 產生鑑定品系17053之擴增子。鑑定品系17053之擴增子包 含至少一個如本文中SEQ ID NO: 1或SEQ ID NO: 2([A]及 [B],分別說明於圖1中)所提供之接合序列。SEQ ID NO: 1(圖1之[A])為對應於側接序列與轉殖基因插入序列5’末端 (SEQ ID NO: 3[C]之位置565至5 84,參見圖1)之接合序列 的核苷酸序列。SEQ ID NO: 2([B],參見圖1)為對應於側 接序列與轉殖基因插入序列3'末端(SEQ ID NO: 4[D]之626 至645,參見圖1)之接合序列的核苷酸序列。 將產生品系17053之鑑定擴增子的品系引子對包括使用 側接序列(SEQ ID NO: 3及4)及所插入之基因轉殖DNA序列 (SEQ ID NO: 5)設計之引子對。為獲得含有SEQ ID NO: 1 之至少11個核苷酸的鑑定擴增子,將設計基於SEQ ID NO·· 3之鹼基1至564的前置引子分子及基於所插入之表現卡匣 DNA序列SEQ ID NO: 5之位置1至3142的反置引子分子, 其中該等引子分子具有足夠長度的鄰接核苷酸以與SEQ ID NO: 3及SEQ ID NO: 5特異性雜交。為獲得含有SEQ ID NO: 2之至少11個核苷酸的鑑定擴增子,將設計基於所插 入之表現卡匣SEQ ID NO: 5之位置1至3142的前置引子分 147377.doc -46- 201040274 子及基於3’側接序列SEQ ID NO: 4之鹼基1至645的反置引 子分子’其中該等引子分子具有足夠長度的鄰接核苷酸以 與SEQ ID NO: 4及SEQ ID NO: 5特異性雜交。出於實用目 的,應設計產生具有有限大小範圍(例如i 〇〇至丨〇〇〇個鹼基 之間)之擴增子的引子。大小較小(較短聚核苷酸長度)之擴 增子一般而§可較為可靠地產生於允許較短循環時間之 PCR反應中,且易於在瓊脂糖凝膠上分離及觀測或適合於 終點TAQMAN®類之檢定。可產生較小擴增子且可藉由此 項技術中已知之DNA擴增子偵測方法來偵測。此外,使用 引子對產生之擴增子可選殖至載體中,增殖、分離且定 序,或可直接使用此項技術中明確之方法定序。任何來源 於 SEQ ID NO: 3與 SEQ ID NO: 5之組合或 SEQ ID NO: 4與 SEQ ID NO: 5之組合且適用於DNA擴增方法中產生鑑定品 系17053或其子代之擴增子的引子對為本發明之一態樣。 任何單個、分離的包含SEQ ID NO: 3之至少11個鄰接核芽 酸或其互補序列且適用於DNA擴增方法中產生鑑定包含品 系17053之植物或其子代之擴增子的dnA聚核苷酸引子分 子為本發明之一態樣。任何單個、分離的包含SEQ ID NO: 4之至少11個鄰接核苷酸或其互補序列且適用於dna擴增 方法中產生鑑定包含品系17053之植物或其子代之擴增子 的DNA聚核苷酸引子分子為本發明之一態樣。任何單個、 分離的包含SEQ ID NO: 5之至少11個鄰接核苷酸或其互補 序列且適用於DNA擴增方法中產生鑑定包含品系ι7〇53之 植物或其子代之擴增子的D N A聚核苷酸引子分子為本發明 147377.doc -47· 201040274 之一態樣。 用於該分析之擴增條件的實例說明於表7及表8中。然 而,該等方法或者同源或互補於SEQ ID NO: 3或SEQ ID NO: 4或品系17053之轉殖基因插入之DNA序列(SEQ ID NO: 5)之DNA引子產生鑑定品系17053之擴增子的用法之 任何改進屬於本發明之範疇。鑑定擴增子包含同源或互補 於至少一個轉殖基因/基因體接合DNA(SEQ ID NO: 1或 SEQ ID NO: 2)或其實質性部分的DNA分子。 對於樣本中品系17053之分析可包括來自品系17053之陽 性對照、來自非品系17053(例如(但不限於)M-202)之稻米 植物的陰性對照及/或不含有米基因體DNA之陰性對照。 將擴增内源性米DNA分子之引子對可充當DNA擴增條件之 内部控制。任何選自如SEQ ID NO: 3、SEQ ID NO: 4或 SEQ ID NO: 5中所陳列之序列的序列片段可用作DNA擴增 引子用於藉由表7及表8中所展示之方法產生擴增子,且當 使用品系1 7053作為模板進行鑑定擴增反應時,該擴增子 可鑑定品系17053。使用該等DNA引子序列以及表7及表8 之方法的改進屬於本發明之範_。由至少一種來源於S E Q ID NO: 3、SEQ ID NO: 4 或 SEQ ID NO: 5之 DNA 引子序列 所產生的用於鑑定品系17053之擴增子為本發明之一態 樣。 可因此設計DN A偵測套組,其含有至少一種具有來源於 SEQ ID NO: 3、SEQ ID NO: 4 或 SEQ ID NO: 5之足夠長度 鄰接核苷酸之DNA引子且當用於DNA擴增方法時產生鑑定 147377.doc -48- 201040274 包含品系1 7053之植物或其子代之擴增子,且其為本發明 之一態樣。當在DNA擴增方法中測試時可產生鑑定品系 17053之擴增子的稻米植物部分或種子或商品為本發明之 一態樣。對於品系17053擴增子之檢定可如表8中所示藉由 使用 Applied Biosystems GeneAmp® PCR System 9700 或When performing thermal amplification in an Eppendorf Mastercycler Gradient or MJ Engine, the temperature cycler should be operated in calculation mode. When performing thermal amplification in perkin_Elmer 9700, the temperature cycler should be set to maximum uniformity. Table 7: Rice Line 17053 Specific Endpoint TAQMAN® Step Reagent Volume Remarks 1 18 MΩ Water Adjusted to 10 μΐ Final Volume 2 2x Universal Standard Mix (dNTP, Enzyme, Buffer) 5.0 μΐ 1χ Final Concentration 3 Primer-1 and Primer-2 Mixture (resuspended in 18 MΩ water to a concentration of 20 uM) Example: In a microcentrifuge tube, the following should be added to achieve a concentration of 500 μΐ at a final concentration of 20 μM: 100 μΜ 100 μΐ primer SQ4194 (SEQ ID NO: 7); 100 μΜ concentration of 100 μΐ primer SQ4191 (SEQ ID NO: 8); 300 μ118 Meg water 0.5 μΐ 1.0 μΜ final concentration 4 strain 6-FAMTM MGB probe PB1494 (SEQ ID NO: 9) (Resuspend in 18 MΩ water to 10 μΜ concentration) 0.2 μΐ 0.2 μΜ Final concentration 5 Extracted DNA (template>: 1. Leaf sample to be analyzed 2. Negative control (non-gene transfer) DNA) 3. Negative water control (no template) 4. Positive control 17053 DNA 3.0 μΐ Table 8: End point TAQMAN® Thermal cycler Condition cycle number setting 1 50°C 2 minutes 1 95〇C 1〇10 10〇C 15 Seconds 64t 1 minute 147377.doc • 45- 201040274 -l °c / cycle 30 95 ° C 15 seconds 54V 1 minute 1 10 ° C Permanent Example 4: Identification of lineage 1753 in terms of breeding activity This example describes how a child with line 1 7053 can be used in a child with any breeding activity Internal recognition line 1 7053. An amplicon of the identification line 17053 was generated using a DNA line primer pair. The amplicon of the identification line 17053 comprises at least one SEQ ID NO: 1 or SEQ ID NO: 2 ([A] and [ B], the ligation sequence provided in Figure 1 respectively. SEQ ID NO: 1 ([A] of Figure 1) corresponds to the flanking sequence and the 5' end of the transgene insertion sequence (SEQ ID NO: 3) The position of [C] is 565 to 5 84, see the nucleotide sequence of the junction sequence of Figure 1). SEQ ID NO: 2 ([B], see Figure 1) corresponds to the flanking sequence and the transgene insertion sequence 3 The nucleotide sequence of the junction sequence of the 'end (SEQ ID NO: 4 [D], 626 to 645, see Figure 1). The line primer pair that will produce the identified amplicon of line 17053 includes the use of flanking sequences (SEQ ID NO: 3 and 4) and the primer pair designed for the inserted gene transfer DNA sequence (SEQ ID NO: 5). To obtain an identified amplicon comprising at least 11 nucleotides of SEQ ID NO: 1, a pre-priming molecule based on bases 1 to 564 of SEQ ID NO. 3 is designed and based on the inserted expression cassette DNA The inverted primer molecules of positions 1 to 3142 of SEQ ID NO: 5, wherein the primer molecules have contiguous nucleotides of sufficient length to specifically hybridize to SEQ ID NO: 3 and SEQ ID NO: 5. To obtain an identified amplicon containing at least 11 nucleotides of SEQ ID NO: 2, a pre-priming based on position 1 to 3142 of the inserted expression cassette SEQ ID NO: 5 is designed to be 147377.doc-46 - 201040274 and an inverted primer molecule based on bases 1 to 645 of the 3' flanking sequence SEQ ID NO: 4 wherein the primer molecules have contiguous nucleotides of sufficient length to SEQ ID NO: 4 and SEQ ID NO: 5 specific hybridization. For practical purposes, primers should be designed to produce amplicons with a limited range of sizes (e.g., between i 〇〇 and 丨〇〇〇 bases). Amplicon of smaller size (shorter length of polynucleotide) is generally more reliable and can be generated in PCR reactions that allow for shorter cycle times, and is easily separated and observed on an agarose gel or suitable for the endpoint. TAQMAN® class certification. Smaller amplicons can be generated and detected by DNA amplicon detection methods known in the art. In addition, the amplicon produced using the primer pair can be selected for propagation into the vector, propagated, isolated and sequenced, or can be directly sequenced using methods well defined in the art. Any amplicon derived from the combination of SEQ ID NO: 3 and SEQ ID NO: 5 or the combination of SEQ ID NO: 4 and SEQ ID NO: 5 and suitable for use in a DNA amplification method to produce the identification line 17053 or a progeny thereof The introduction of the pair is an aspect of the invention. Any single, isolated DNA polynucleus comprising at least 11 contiguous ribonic acids of SEQ ID NO: 3 or a complement thereof and suitable for use in a DNA amplification method to produce an amplicon identifying a plant or a progeny thereof comprising line 17053 The glucoside primer molecule is one aspect of the invention. Any single, isolated, at least 11 contiguous nucleotides of SEQ ID NO: 4 or the complement thereof and suitable for use in a DNA amplification method to produce a DNA polynucleus that identifies an amplicon comprising a plant or a progeny of line 17053 The glucoside primer molecule is one aspect of the invention. Any single, isolated DNA comprising at least 11 contiguous nucleotides of SEQ ID NO: 5 or a complement thereof and suitable for use in a DNA amplification method to produce an amplicon identifying a plant or a progeny thereof comprising line ι7〇53 The polynucleotide primer molecule is one of the aspects of the invention 147377.doc -47· 201040274. Examples of amplification conditions used in this analysis are illustrated in Tables 7 and 8. However, such methods are either DNA primers homologous or complementary to the DNA sequence of the transgene insertion of SEQ ID NO: 3 or SEQ ID NO: 4 or line 17053 (SEQ ID NO: 5) to generate amplification of the identification line 17053. Any improvement in the usage of the child is within the scope of the invention. The amplicon is identified to comprise a DNA molecule that is homologous or complementary to at least one of the transgene/genomic junction DNA (SEQ ID NO: 1 or SEQ ID NO: 2) or a substantial portion thereof. Analysis of line 17053 in the sample can include a positive control from line 17053, a negative control from a non-lineage 17053 (e.g., but not limited to, M-202) rice plants, and/or a negative control containing no rice genomic DNA. The pair of primers that amplify the endogenous rice DNA molecule can serve as an internal control for DNA amplification conditions. Any sequence fragment selected from the sequence set forth in SEQ ID NO: 3, SEQ ID NO: 4 or SEQ ID NO: 5 can be used as a DNA amplification primer for generation by the methods shown in Tables 7 and 8. The amplicon, and when the line 1 7053 was used as a template to identify the amplification reaction, the amplicon can identify line 17053. Improvements using the DNA primer sequences and the methods of Tables 7 and 8 are within the scope of the present invention. An amplicon for identifying line 17053 produced by at least one DNA primer sequence derived from S E Q ID NO: 3, SEQ ID NO: 4 or SEQ ID NO: 5 is one aspect of the invention. The DN A detection kit can therefore be designed to contain at least one DNA primer having a sufficient length contiguous nucleotide derived from SEQ ID NO: 3, SEQ ID NO: 4 or SEQ ID NO: 5 and used for DNA amplification An increase in the method yields an identification 147377.doc -48- 201040274 An amplicon comprising a plant of line 1 7053 or a progeny thereof, and which is an aspect of the invention. A rice plant part or seed or commodity which produces an amplicon identifying line 17053 when tested in a DNA amplification method is one aspect of the invention. The assay for line 17053 amplicons can be performed as shown in Table 8 by using Applied Biosystems GeneAmp® PCR System 9700 or

Stratagene RoboCycler® 或 MJ Engine 或 Perkin_Elmer 97〇〇 或Eppendorf Mastercycler® Gradient溫度循環儀或任何其 他可用於產生鑑定品系17053之擴增子的擴增系統來進 包含上文所揭示^申請專利範圍中所述之米品系17〇53 之代表性種子樣本已根據布達佩斯條約寄存於美國菌種保 存中心(ATCC)(美國維吉尼亞州馬納沙斯市大學大道】咖 - 號,郵遞區號20110)。寄存日期為2_年2们8日。該寄 存之ATCC寄存編號為PTA_9843。寄存將保留於寄存㈣ 年時間,或最後請求後的5年時間,或專利有效期限(取盆 〇 甲一個較長時間)’且在該時間内若需要,可更換。 =然已說明及描述本發明之原理,但熟習此項技術者應 7楚本發明可在不㈣該等原理的情況下在安排及纟ϋ 的所有改進。 胃專㈣圍之精神及範轉内 【圖式簡單說明】 圖1·米品系17053之圖示:[Α 位置(如SEQ ID NO: 1所提供),μ乎口 &amp;域之相對 因轉殖膽Α的5,部分之間之接合卢、為未基因體與所插入基 〇处,[B]對應於3'接合區域 147377.doc •49· 201040274 之相對位置(如SEQ ID NO: 2所提供),其為米基因體與所 插入基因轉殖DNA的3’部分之間之接合處;[C]對應於5’側 接區域及所插入基因轉殖DNA之一部分5'末端的相對位置 (如SEQ ID NO: 3所提供),其包括側接品系17053的經整合 之表現卡匣的5'米基因體序列及轉殖基因DNA的5’末端之 區域;[D]對應於3’侧接區域及所插入基因轉殖DNA之一部 分3’末端之相對位置(如SEQ ID NO: 4所提供),其包括側 接品系17053的經整合之表現卡匣的3’米基因體序列及轉殖 基因DNA的3'末端之區域;[E]表示插入品系17053基因體 中之轉殖基因表現卡匣(如SEQ ID NO·· 5所提供);且[F]表 示側接序列及轉殖基因表現卡匣之鄰接序列(如SEQ ID NO: 6所提供),其如該圖由左至右所示包含SEQ ID NO: 3、SEQ ID NO: 5及 SEQ ID NO: 4,其中 SEQ ID NO: 1 及 SEQ ID NO: 2由於表示品系17053之接合序列而如上所述 被併入。 147377.doc -50- 201040274Stratagene RoboCycler® or MJ Engine or Perkin_Elmer 97(R) or Eppendorf Mastercycler® Gradient Temperature Cycler or any other amplification system that can be used to generate the amplicons of the identified line 17053 is included in the scope of the above-disclosed patent application. A representative seed sample of the rice line 17〇53 has been deposited with the American Type Culture Collection (ATCC) under the Budapest Treaty (University Avenue, Manassas, VA, USA), zip code 20110). The registration date is 2_years and 2 days. The ATCC registration number for this deposit is PTA_9843. The deposit will remain in the deposit (four) year period, or the five-year period after the last request, or the patent expiration date (take a long period of time) and can be replaced if needed during that time. The principles of the present invention have been illustrated and described, but it will be apparent to those skilled in the art that the present invention may be practiced without departing from the scope of the principles. The spirit of the stomach (four) and the spirit of the circle [simplified description of the schema] Figure 1 shows the diagram of the rice line 17053: [Α position (as provided in SEQ ID NO: 1), the relative cause of the μ mouth &amp; The 5th part of the cholestyramine is the junction between the ungenerated body and the inserted raft, and [B] corresponds to the relative position of the 3' junctional region 147377.doc •49· 201040274 (eg SEQ ID NO: 2) Provided), which is the junction between the rice genome and the 3' portion of the inserted gene-transferred DNA; [C] corresponds to the 5' flanking region and the relative 5' end of one of the inserted gene-transferred DNA Position (as provided by SEQ ID NO: 3), which comprises the 5' rice genome sequence of the integrated expression cassette of the flanking line 17053 and the 5' end region of the transgenic DNA; [D] corresponds to 3 The relative position of the flanking region and the 3' end of one of the inserted gene-transforming DNA (as provided by SEQ ID NO: 4), which includes the integrated expression of the flanking line 17053, the 3'-m gene sequence of the cassette And the region of the 3' end of the transgenic DNA; [E] indicates the transgene expression of the inserted line 17053 gene (eg SEQ ID) NO.·5 provides); and [F] represents the contiguous sequence of the flanking sequence and the transgene expression cassette (as provided by SEQ ID NO: 6), which contains the SEQ ID from left to right as shown in the figure. NO: 3, SEQ ID NO: 5 and SEQ ID NO: 4, wherein SEQ ID NO: 1 and SEQ ID NO: 2 are incorporated as described above due to the junction sequence representing line 17053. 147377.doc -50- 201040274

Ο 序列表 &lt;110&gt; 美商孟山都科技有限責任公司 &lt;120 基因轉殖米品系17053及其使用方法 &lt;130&gt; 38-21(56582)0001 &lt;140&gt; 099109684 &lt;141&gt; 2010/03/30 &lt;150&gt; 61/164,899 &lt;151&gt; 2009-03-30 &lt;160&gt; 15 &lt;170&gt; Patentln version 3.5 &lt;210&gt; 1 &lt;211&gt; 20 &lt;212&gt; &lt;213&gt; DNA 人工序列 &lt;220&gt; &lt;223&gt;化學合成之寡核苷酸;米基因體DNA及轉殖基因DNA之嵌合DNA分子 &lt;400&gt; 1 aaaggataca accaagcttg Z0 &lt;210&gt; 2 &lt;211&gt; 20 &lt;212&gt; DNA .&lt;213&gt;人工序列 &lt;220&gt; &lt;223&gt;化學合成之寡核苷酸;米基因體DNA及轉殖基因DNA之嵌合DNA分子 &lt;400&gt; 2 tagtctatgt taagcttggt 20 &lt;210&gt; 3 &lt;211&gt; 584 &lt;212&gt; DNA 人工序列 &lt;220&gt; &lt;223&gt;米基因體DNA及轉殖基因DNA之嵌合DNA分子 &lt;400&gt; 3 ttgtagaagt taagcaaaag tcaatggcat attgtagaac dtgataaagt cagtgjgcaaa tcgtagacgt gtgacaaaat cagtggtata taatggattc tctctattat tttagaccta tgattgtctt gcagtaagat agtgtagaag tcttggtcat tgcgagctgc tcgctttttg tcattgatgt agcattacat tgtttagtca agaagtactg ctgctcgctc gagtcattca 60 120 180 240 147377.doc 201040274 attcgttaga cgttgcttct gattgaatca tgcatgaagt acctatctgt aaccaatgtt 300 attctagatg gtagacaata aatattggat caccgtttgt ttacttgtta tacttgacaa 360 atagacacag aacgtgacaa acatcggata ccatgtccag tatgcatgat aatttaaaaa 420 aagaacaatc tagctcatca ccccggtcaa aatatatgct ttaatttctt acaagattaa 480 tcctatcttg tgaggaggca ggtggatcga tccatcggag ttaattaa&lt;ia agactaagga 540 agaccataat agagaatcca aataaaagga tacaaccaag cttg 584 &lt;210&gt; 4 &lt;211&gt; 645 &lt;212&gt; DNA &lt;213&gt;人工序列 &lt;220&gt; &lt;223&gt;米基因體DNA及轉殖基因DNA之嵌合DNA分子 &lt;400&gt; 4 caaaagtaac tggcggcgtg gccatcgcta tagaaagaaa gaaggcacca gggtgtcgtc 60 . · · ·. · ggcaacagag gtggccagct tgtcatcgcg gtcagagtcg gagcttcacg tcattgccgc 120 gacggtggtt gggctctcag tctccatgtt actgcctggg gaagacgggt tcgacgacat 180 ggatgaggag gagagcagcg gcggcgtgtg ctaacgagga ggaggaaaga gagagatgat 240 gaagggttag aggatgggaa agaggaaggg ggagaggagg ggaaagagag gggtgttgac 300 gtgggttcca caatgttttt ttttactata taagtgccac gtcaacacta tataggtgtt 360 acatcagtcg aaactgaggg ggtgtttgga tgggactgaa actctttagt ccctgtcaca 420 tcggatgttt gaacaccaat tagaagtatt aaacgtagac taatgacaaa acccattcta 480 taaccctaga ctgattcaca ctacgaatct atgtgagcct aatttatcaa tgattagcct 540 atgtgatgct acagtaaata ttctctcata tggattaatt agtcttaaaa aatttgtctc 600 gcgaattagc tctcatttat gtaagtagtc tatgttaagc ttggt 645 &lt;210&gt; 5 &lt;211&gt; 3142 &lt;212&gt; DNA &lt;213&gt;人工序列 &lt;220&gt; accaagcttg atatccctag ggcggccgcg ttaacaagct tctgcaggtc cgattgagac 60 ttttcaacaa agggtaatat ccggaaacct cctcggattc cattgcccag ctatctgtca 120 ctttattgtg aagatagtgg aaaaggaagg tggctcctac aaatgccatc attgcgataa 180 aggaaaggcc atcgttgaag atgcctctgc cgacagtggt cccaaagatg gacccccacc 240 &lt;223&gt;化學合成之寡核苷酸;米基因體DNA及轉殖基因DNA之嵌合DNA分子 &lt;400&gt; 5 147377.doc 2- 201040274 cacgaggagc atcgtggaaa aagaagacgt tccaaccacg tcttcaaagc siagtggattg atgtgatggt ccgattgaga cttttcaaca aagggtaata tccggaaacc tcctcggatt ccattgccca gctatctgtc acttt'attgt gaagatagtg 会gtg会cttcta. caaatgccat cattgcgata aaggaaaggc catcgttgaa gatgcctctg ccgacagtgg . · .. ..』 ... tcccaaagat ggacccccac ccacgaggag catcgtggaa aaagaagacg ttccaiaccac • , .. ; ..,. gtcttcaaag caagtggatt gatgtgatat ctccactgac gtaagggatg acgcacaatc ...-. ' ' ccactatcct tcigcaagacc cttcctctat ataaggaagt tcatttcatt tggagaggac acgctgacaa gctgactcta gcagatcctc tagaaccatc ttccacacac tcaagccaca ctattggaga acacacaggg acaacacacc ataagatcca agggaggcct ccgccgccgc cggtaaccac cccgcccctc tcctctttct ttctccgttt ttttttccgt ctcggtctcg atctttggcc ttggtagttt giggtgggcga gaggcggctt cgtgcgcgcc cagatcggtg cgcgggaggg gcgggatctc gcggctgggg ctctcgccgg cgtggatccg gcccggatct 〇 cgcggggaat ggggctctcg gatgtagatc tgcgatccgc cgttgttggg ggagatgatg gggggtttaa aatttccgcc gtgctaaaca agatcaggaa gaggggaaaa gggcactatgi . · gtttatattt ttatatattt ctgctgcttc gtcaggctta gatgtgctag atctttcttt cttctttttg tggigtagaat ttgaatccct cagcattgtt catcggtagt ttttcttttc • : ·· · '· atgatttgtg acaaatgcag cctcgtgcgg agcttttttg taggtagaag tgatcaa^ca; tggcgcaagt tagcagaatc tgcaatggtg tgcagaaccc atctcttatc tccaatctct - . . *· · cgaaatccag tcaacgcaaa tctcccttat cggtttctct gaagacgcag cagcatccac gagcttatcc gatttcgtcg tcgtggggat tgaagaagag tgggatgacg ttaattggct ctgagcttcg tcctcttaag gtcatgtctt ctgtttccac ggcgtgcatg ctacacggtg caagcagccg gccggcaacc gctcgcaaat cttccggcct ttcgggaacg gtcaggattc cgggcgataa gtccatatcc caccggtcgt tcatgttcgg cggtcttgcc agcggtgaga ^ cgcgcatcac gggcctgctt gaaggtgagg acgtgatcaa taccgggaag gccatgcagg ctatgggagc gcgtatccgc aaggaaggtg acacatggat cattgacggc gttgggaatg . gcggtctgct cgcccctgag gcccctctcg acttcggcaa tgcggcgacg ggctgcaggc tcactatggg actggtcggg gtgtacgact tcgatagcac gttcatcgga gacgcetcgc tcacaaagcg cccaatgggc cgcgttctga acccgttgcg cgagatgggc gtacaggtca aatccgagga tggtgaccgt ttgcccgtta cgctgcgcgg gccgaagacg cctaccccga ttacctaccg cgtgccaatg gcatcegccc aggtcaagtc agccgtgctc ctcgccggac tgaacactcc gggcatcacc acggtgatcg agcccatcat gaccagggat cataccgaaa agatgcttca ggggtttggc gccaacctga cggtcgagac ggacgctgac ggcgtcagga 147377.doc 300 360 420 480 540 600 660 720 780 840 900 960 1020 1080 H4Q 1200 1260 1320 1380 1440 1500 1560 1620 1680 1740 1800 1860 1920 1980 2040 2100 2160 201040274 ccatccgcct tgagggcagg ggtaaactga ctggccaagt catcgatgtt ccgggagiacc cgtcgtccac ggccttcccg ttggttgcgg cgctgctcgt gccggggagt gacgtgacca tcctgaacgt cctcatgaac ccgaccagga ccggcctgat cctcacgctt caggagatgg • . . · · · · . gagccgacat cgaggtgatc aacccgcgcc tggcaggcgg tgaagacgtt gcggatctgc . . ..... gcgtgcgctc ctctaccctg aagggcgtga cggtcccgga agatcgcgcg ccgtccatga tagacgagta tcctattctg gccgtcgccg ctgcgttcgc cgaaggggcc acggtcatga acggtcttga ggaactccgc gtgaaggaat cggatcgcct gtcggcggtg gccaatggcc tgaagctcaa cggtgttgac tgcgacgagg gtgagacctc actcgtggtc cgtggccggc - · ctgatggcaa gggcctcggc aacgccagtg gagcggccgt cgccacgcac ctcgatcatc gcatcgcgat gtccttcttg gtgatgggtc tcgtctcaga gaacccggtg accgtcgatg • · acgccacgat gatagcgacg agcttcccag agttcatgga tctgatggcg ggcctcgggg ccaagatcga actgtctgac acgaaggccg cttgaattcc cgatcgttca aacatttggc aataaagttt cttaagattg aatcctgttg ccggtcttgc gatgattatc atataatttc tgttgaatta cgttaagcat gtaataatta acatgtaatg catgacgtta tttatgagat gggtttttat gattagagtc ccgcaattat acatttaata cgcgatagaa aacaaaatat agcgcgcaaa ctaggataaa ttatcgcgcg cggtgtcatc tatgttacta gatcggggat ggggaattcg gtaccaagct ta &lt;210&gt; 6 &lt;211&gt; 4351 &lt;2X2&gt; DNA &lt;213&gt;人工序列 .化學合成之募核苷酸;米基因體DNA及轉殖基因DNA之敌合DNA分子 &lt;400&gt; 6 ttgtagaagt taagcaaaag tcaatggcat attgtagaac atgataaagt cagtggcaaa tcgtagacgt gtgacaaaat cagtggtata taatggattc tctctattat tttagaccta ' . tgattgtctt gcagtaagat agtgtagaag tcttggtcat tgcgagctgc tcgctttttg tcattgatgt agcattacat tgtttagtca agaagtactg ctgctcgctc gagtcattca attcgttaga cgttgcttct gattgaatca tgcatgaagt acctatctjgt aaccaatgtt attctagatg gtagacaata aatattggat caccgtttgt ttiacttgtta tacttgacaa atagacacag aacgtgacaa acatcggata.ccatgtccag tatgcatgat.aatttaaaaa aagaacaatc tagctcatca ccccggtcaa aatatatgct ttaatttctt acaagattaa tcctatcttg tgaggaggca ggtggatcga tccatcggag ttaattaaaa agactaagga 2220 2280 2340 2400 2460 2520 2580 2640 2700 2760 2820 2880 2940 3000 3060 3120 3142 60 120 180 240 300 360 420 480 540 147377.doc -4- 201040274 agaccataat agagaatcca aataaaagga tacaaccaag cttgatatcc ctagggcggc 1 . . . ... . cgcgttaaca agcttctgca ggtccgattg agacttttca acaaagggta atatccggaa ' . .. ... .... .·.':· acctcctcgg attccattgc ccagctatct gtcactttat tgtgaagata gtggaaaagg aaggtggctc ctacaaatgc catcattgcg ataaaggaaa ggccatcgtt gaagatgcct . ·. · · .. · . ... ctgccgacag tggtcccaaa gatggacccc cacccacgag gagcatcgtg gaaaaaigaag : . - · · ·. · 、 ·. acgttccaac cacgtcttca aagcaagtgg attgatgtga tggtccgatt gagacttttc · · aacaaagggt aatatccgga aacctcctcg gattccattg cccagctatc tgtcacttta ttgtgaagat agtggaaaag gaaggtggct cctacaaatg ccatcattgc gataaaggaa . . 圓 .. aggccatcgt tgaagatgcc tctgccgaca gtggtcccaa agatggaccc ccacccacga ggagcatcgt ggaaaaagaa gacgttccaa ccacgtcttc aaagcaagtg gattgatgtg &quot; · . atatctccac tgacgtaagg gatgacgcac aatcccacta tccttcgcaa gacccttcct - ' ctatataagg aagttcattt catttggaga ggacacgctg acaagctgac tctagcagat .... · Ο 〇 cctctagaac c?tcttccac acactcaagc caeactattg gagaacacac agggacaaca • . · ·. · caccataaga tccaagggag gcctccgccg ccgccggtaa ccaccccgcc cctctcctct ttctttctcc gttttttttt ccgtctcggt ctcgatcttt ggccttggta gtttgggtgg gcgagaggcg gcttcgtgcg cgcccagatc ggtgc^cggg aggggcggga tctcgcggct ggggctctcg ccggcgtgga tccggcccgg atctcgcggg gaatggggct ctcggatgta gatctgcgat ccgccgttgt tgggggagat gatggggggt ttaaaatttc cgccgtgcta aacaagatca ggaagagggg aaaagggcac tatggtttat atttttatat atttctgctg . . · ; . ... -- ,..- cttcgtcagg cttagatgtg ctagatcttt ctttcttctt tttgtgggta gaatttgaat ccctcagcat tgttcatcgg tagtttttct tttcatgatt tgtgacaaat geagcctcgt gcggagcttt tttgtaggta gaagtgatca accatggcgc aagttagcag aatctgcaat ggtgtgcaga acccatctct tatctccaat ctctcgaaat ccagtcaacg caaatctccc ttatcggttt ctctgaagac gcagcagcat ccacgagctt atccgatttc gtcgtcgtgg ggattgaaga agagtgggat gacgttaatt ggctctgagc ttcgtcctct taaggtcatg tcttctgttt ccacggcgtg catgctacac ggtgcaagca gccggccggc daccgctcgc. aaatcttccg gcctttcggg aacggtcagg attccgggcg ataagtccat atcccaccgg tcgttcatgt tcggcggtct tgccagcggt gagacgcgca tcacgggcct gcttgaai^gt gaggacgtga tcaataccgg gaaggccatg caggctatgg gagcgcgtat ccgcaaggaa • - - · ggtgacacat ggatcattga cggcgttggg aatggcggtc tgctcgcccc tgaggcccct ctcgacttcg gcaatgcggc gacgggctgc aggctcacta tgggactggt cggggtgtac 147377.doc 201040274 gacttcgata gcacgttcat cggagacgcc tcgctcacaa agcgcccaat gggccgcgtt 2460 ctgaacccgt tgcgcgagat gggcgtacag gtcaaatccg aggatggtga ccgtttgccc ..2520. • . · · . - · gttacgctgc gcgggccgaa gacgcctacc ccgattacct accgcgtgcc aatggcatcc 2580 gcccaggtca agtcagccgt gctcctcgcc ggactgaaca ctccgggcat caccacggtg 2640 - . - . atcgagccca tcatgaccag ggatcatacc gaaaagatgc ttcaggggtt tggcgccaac 2700序列 Sequence Listing &lt;110&gt; American Monsanto Technology Co., Ltd. &lt;120 Gene Transgenic Rice Line 17053 and Method of Use &lt;130&gt; 38-21(56582)0001 &lt;140&gt; 099109684 &lt;141&gt; 2010/03 /30 &lt;150&gt; 61/164,899 &lt;151&gt; 2009-03-30 &lt;160&gt; 15 &lt;170&gt; Patentln version 3.5 &lt;210&gt; 1 &lt;211&gt; 20 &lt;212&gt;&lt;213&gt; DNA artificial Sequence &lt;220&gt;&lt;223&gt; chemically synthesized oligonucleotide; chimeric DNA molecule of rice gene DNA and transgenic DNA &lt;400&gt; 1 aaaggataca accaagcttg Z0 &lt;210&gt; 2 &lt;211&gt; 20 &lt;;212&gt;DNA.&lt;213&gt;Artificialsequence&lt;220&gt;&lt;223&gt; Chemically synthesized oligonucleotide; chimeric DNA molecule of rice gene DNA and transgenic DNA&lt;400&gt; 2 tagtctatgt taagcttggt 20 &lt;;210&gt; 3 &lt;211&gt; 584 &lt;212&gt; DNA artificial sequence &lt;220&gt;&lt;223&gt; rice genomic DNA and chimeric DNA molecule of transgenic DNA&lt;400&gt; 3 ttgtagaagt taagcaaaag tcaatggcat attgtagaac dtgataaagt cagtgjgcaaa tcgtagacgt Gtgacaaaat cagtggtata taatggattc tctctattat tt tagaccta tgattgtctt gcagtaagat agtgtagaag tcttggtcat tgcgagctgc tcgctttttg tcattgatgt agcattacat tgtttagtca agaagtactg ctgctcgctc gagtcattca 60 120 180 240 147377.doc 201040274 attcgttaga cgttgcttct gattgaatca tgcatgaagt acctatctgt aaccaatgtt 300 attctagatg gtagacaata aatattggat caccgtttgt ttacttgtta tacttgacaa 360 atagacacag aacgtgacaa acatcggata ccatgtccag tatgcatgat aatttaaaaa 420 aagaacaatc tagctcatca ccccggtcaa aatatatgct ttaatttctt acaagattaa 480 tcctatcttg Tgaggaggca ggtggatcga tccatcggag ttaattaa&lt;ia agactaagga 540 agaccataat agagaatcca aataaaagga tacaaccaag cttg 584 &lt;210&gt; 4 &lt;211&gt; 645 &lt;212&gt; DNA &lt;213&gt;Artificial sequence &lt;220&gt;&lt;223&gt; Rice genomic DNA and transformation the chimeric DNA molecule of genomic DNA &lt; 400 &gt;.. 4 caaaagtaac tggcggcgtg gccatcgcta tagaaagaaa gaaggcacca gggtgtcgtc 60 · · · · ggcaacagag gtggccagct tgtcatcgcg gtcagagtcg gagcttcacg tcattgccgc 120 gacggtggtt gggctctcag tctccatgtt actgcctggg gaagacgggt tcgacgacat 180 ggatgaggag gagagcagcg gcggcgtgtg ctaacgagga ggaggaaaga gagagatgat 240 gaagggttag aggatgggaa agaggaaggg ggagaggagg ggaaagagag gggtgttgac 300 gtgggttcca caatgttttt ttttactata taagtgccac gtcaacacta tataggtgtt 360 acatcagtcg aaactgaggg ggtgtttgga tgggactgaa actctttagt ccctgtcaca 420 tcggatgttt gaacaccaat tagaagtatt aaacgtagac taatgacaaa acccattcta 480 taaccctaga ctgattcaca ctacgaatct atgtgagcct aatttatcaa tgattagcct 540 atgtgatgct acagtaaata ttctctcata tggattaatt agtcttaaaa aatttgtctc 600 gcgaattagc tctcatttat gtaagtagtc tatgttaagc ttggt 645 &lt; 210 &gt; 5 &lt; 211 &gt; 3142 &lt; 212 &gt; DNA &lt; 213 &gt; artificial sequence &lt; 220 &gt; accaagcttg atatccctag ggcggccgcg ttaacaagct tctgcaggtc cgattgagac 60 ttttcaacaa agggtaatat ccggaaacct cctcggattc cattgcccag ctatctgtca 120 ctttattgtg aagatagtgg aaaaggaagg tggctcctac aaatgccatc attgcgataa 180 aggaaaggcc atcgttgaag Atgcctctgc cgacagtggt cccaaagatg gacccccacc 240 &lt;223&gt; chemically synthesized oligonucleotide; chimeric DNA molecule of rice gene DNA and transgenic DNA &lt;400&gt; 5 147377.doc 2-201040 274 cacgaggagc atcgtggaaa aagaagacgt tccaaccacg tcttcaaagc siagtggattg atgtgatggt ccgattgaga cttttcaaca aagggtaata tccggaaacc tcctcggatt ccattgccca gctatctgtc acttt'attgt gaagatagtg will gtg will cttcta. Caaatgccat cattgcgata aaggaaaggc catcgttgaa gatgcctctg ccgacagtgg. · .. .. "... tcccaaagat ggacccccac ccacgaggag catcgtggaa aaagaagacg ttccaiaccac •, .. ;.. .., gtcttcaaag caagtggatt gatgtgatat ctccactgac gtaagggatg acgcacaatc ...- '' ccactatcct tcigcaagacc cttcctctat ataaggaagt tcatttcatt tggagaggac acgctgacaa gctgactcta gcagatcctc tagaaccatc ttccacacac tcaagccaca ctattggaga acacacaggg acaacacacc ataagatcca agggaggcct ccgccgccgc cggtaaccac cccgcccctc tcctctttct ttctccgttt ttttttccgt ctcggtctcg atctttggcc ttggtagttt giggtgggcga gaggcggctt cgtgcgcgcc cagatcggtg cgcgggaggg gcgggatctc Gcggctgggg ctctcgccgg cgtggatccg gcccggatct 〇cgcggggaat ggggctctcg gatgtagatc tgcgatccgc cgttgttggg ggagatgatg gggggtttaa aatttccgcc gtgctaaaca agatcaggaa gaggggaaaa gggcactatgi . · gtttatattt t tatatattt ctgctgcttc gtcaggctta gatgtgctag atctttcttt cttctttttg tggigtagaat ttgaatccct cagcattgtt catcggtagt ttttcttttc •: ·· · '· atgatttgtg acaaatgcag cctcgtgcgg agcttttttg taggtagaag tgatcaa ^ ca; tggcgcaagt tagcagaatc tgcaatggtg tgcagaaccc atctcttatc tccaatctct - * · · cgaaatccag tcaacgcaaa tctcccttat cggtttctct gaagacgcag cagcatccac gagcttatcc gatttcgtcg tcgtggggat tgaagaagag tgggatgacg.. ttaattggct ctgagcttcg tcctcttaag gtcatgtctt ctgtttccac ggcgtgcatg ctacacggtg caagcagccg gccggcaacc gctcgcaaat cttccggcct ttcgggaacg gtcaggattc cgggcgataa gtccatatcc caccggtcgt tcatgttcgg cggtcttgcc agcggtgaga ^ cgcgcatcac gggcctgctt gaaggtgagg acgtgatcaa taccgggaag gccatgcagg ctatgggagc gcgtatccgc aaggaaggtg acacatggat cattgacggc gttgggaatg. gcggtctgct cgcccctgag gcccctctcg acttcggcaa tgcggcgacg ggctgcaggc tcactatggg actggtcggg gtgtacgact tcgatagcac gttcatcgga gacgcetcgc tcacaaagcg cccaatgggc cgcgttctga acccgttgcg cgagatgggc Gtacaggtca aatccgagga tggtgaccgt ttgcccgtta cgctgcgcgg gccga agacg cctaccccga ttacctaccg cgtgccaatg gcatcegccc aggtcaagtc agccgtgctc ctcgccggac tgaacactcc gggcatcacc acggtgatcg agcccatcat gaccagggat cataccgaaa agatgcttca ggggtttggc gccaacctga cggtcgagac ggacgctgac ggcgtcagga 147377.doc 300 360 420 480 540 600 660 720 780 840 900 960 1020 1080 H4Q 1200 1260 1320 1380 1440 1500 1560 1620 1680 1740 1800 1860 1920 1980 2040 2100 2160 201040274 ccatccgcct tgagggcagg ggtaaactga ctggccaagt catcgatgtt ccgggagiacc cgtcgtccac ggccttcccg ttggttgcgg cgctgctcgt gccggggagt gacgtgacca tcctgaacgt cctcatgaac ccgaccagga ccggcctgat cctcacgctt caggagatgg •.. · · · ·. gagccgacat cgaggtgatc aacccgcgcc tggcaggcgg tgaagacgtt gcggatctgc.. ..... gcgtgcgctc ctctaccctg aagggcgtga cggtcccgga agatcgcgcg ccgtccatga tagacgagta tcctattctg gccgtcgccg ctgcgttcgc cgaaggggcc acggtcatga acggtcttga ggaactccgc gtgaaggaat cggatcgcct gtcggcggtg gccaatggcc tgaagctcaa cggtgttgac tgcgacgagg gtgagacctc actcgtggtc cgtggccggc - · ctgatggcaa gggcctcggc aacgccagtg gagcggccgt cgcca cgcac ctcgatcatc gcatcgcgat gtccttcttg gtgatgggtc tcgtctcaga gaacccggtg accgtcgatg • · acgccacgat gatagcgacg agcttcccag agttcatgga tctgatggcg ggcctcgggg ccaagatcga actgtctgac acgaaggccg cttgaattcc cgatcgttca aacatttggc aataaagttt cttaagattg aatcctgttg ccggtcttgc gatgattatc atataatttc tgttgaatta cgttaagcat gtaataatta acatgtaatg catgacgtta tttatgagat gggtttttat gattagagtc ccgcaattat acatttaata cgcgatagaa aacaaaatat agcgcgcaaa ctaggataaa ttatcgcgcg cggtgtcatc tatgttacta gatcggggat ggggaattcg gtaccaagct ta &lt;210&gt; 6 &lt;211&gt; 4351 &lt;2X2&gt; DNA &lt;213&gt; artificial sequence. nucleotides for chemical synthesis; host DNA DNA of rice gene and transfer gene DNA &lt;400&gt; 6 ttgtagaagt taagcaaaag tcaatggcat attgtagaac atgataaagt cagtggcaaa tcgtagacgt gtgacaaaat cagtggtata taatggattc tctctattat tttagaccta '. tgattgtctt gcagtaagat agtgtagaag tcttggtcat tgcgagctgc tcgctttttg tcattgatgt agcattacat tgtttagtca agaagtactg ctgctcgctc gagtcattca attcgttaga cgttgcttct gattgaatca tgcatgaagt acctatctj gt aaccaatgtt attctagatg gtagacaata aatattggat caccgtttgt ttiacttgtta tacttgacaa atagacacag aacgtgacaa acatcggata.ccatgtccag tatgcatgat.aatttaaaaa aagaacaatc tagctcatca ccccggtcaa aatatatgct ttaatttctt acaagattaa tcctatcttg tgaggaggca ggtggatcga tccatcggag ttaattaaaa agactaagga 2220 2280 2340 2400 2460 2520 2580 2640 2700 2760 2820 2880 2940 3000 3060 3120 3142 60 120 180 240 300 360 420 480 540 147377.doc -4- 201040274 agaccataat agagaatcca aataaaagga tacaaccaag cttgatatcc ctagggcggc 1 . . . ... . cgcgttaaca agcttctgca ggtccgattg agacttttca acaaagggta atatccggaa ' . . . . . . ...:: acctcctcgg attccattgc ccagctatct gtcactttat tgtgaagata gtggaaaagg aaggtggctc ctacaaatgc catcattgcg ataaaggaaa ggccatcgtt gaagatgcct · · · .. · ... ctgccgacag tggtcccaaa gatggacccc cacccacgag gagcatcgtg gaaaaaigaag: -...... · · · ·, · acgttccaac cacgtcttca aagcaagtgg attgatgtga tggtccgatt gagacttttc · · aacaaagggt aatatccgga aacctcctcg Gattccattg cccagctatc tgtcacttta ttgtgaagat agt ggaaaag gaaggtggct cctacaaatg ccatcattgc gataaaggaa round .. aggccatcgt tgaagatgcc tctgccgaca gtggtcccaa agatggaccc ccacccacga ggagcatcgt ggaaaaagaa gacgttccaa ccacgtcttc aaagcaagtg gattgatgtg &quot; · atatctccac tgacgtaagg gatgacgcac aatcccacta tccttcgcaa gacccttcct - 'ctatataagg aagttcattt catttggaga ggacacgctg acaagctgac tctagcagat .... · Ο 〇cctctagaac c...? tcttccac acactcaagc caeactattg gagaacacac agggacaaca •. · ·. · caccataaga tccaagggag gcctccgccg ccgccggtaa ccaccccgcc cctctcctct ttctttctcc gttttttttt ccgtctcggt ctcgatcttt ggccttggta gtttgggtgg gcgagaggcg gcttcgtgcg cgcccagatc ggtgc ^ cggg aggggcggga tctcgcggct ggggctctcg ccggcgtgga tccggcccgg atctcgcggg gaatggggct ctcggatgta gatctgcgat ccgccgttgt tgggggagat gatggggggt ttaaaatttc cgccgtgcta aacaagatca ggaagagggg aaaagggcac tatggtttat atttttatat atttctgctg. · ; . . -- ,..- cttcgtcagg cttagatgtg ctagatcttt ctttcttctt tttgtgggta gaatttgaat ccctcagcat tgttcatcgg tagtttttct tttcatgatt tgtgacaaat geagcctcgt gcggag cttt tttgtaggta gaagtgatca accatggcgc aagttagcag aatctgcaat ggtgtgcaga acccatctct tatctccaat ctctcgaaat ccagtcaacg caaatctccc ttatcggttt ctctgaagac gcagcagcat ccacgagctt atccgatttc gtcgtcgtgg ggattgaaga agagtgggat gacgttaatt ggctctgagc ttcgtcctct taaggtcatg tcttctgttt ccacggcgtg catgctacac ggtgcaagca gccggccggc daccgctcgc. aaatcttccg gcctttcggg aacggtcagg attccgggcg ataagtccat atcccaccgg tcgttcatgt tcggcggtct tgccagcggt gagacgcgca tcacgggcct gcttgaai ^ gt gaggacgtga tcaataccgg gaaggccatg caggctatgg gagcgcgtat ccgcaaggaa • - - · ggtgacacat ggatcattga cggcgttggg aatggcggtc tgctcgcccc tgaggcccct ctcgacttcg gcaatgcggc gacgggctgc aggctcacta tgggactggt cggggtgtac 147377.doc 201040274 gacttcgata gcacgttcat cggagacgcc tcgctcacaa agcgcccaat gggccgcgtt 2460 ctgaacccgt tgcgcgagat gggcgtacag gtcaaatccg aggatggtga ccgtttgccc ..2520 • · · -... · gttacgctgc gcgggccgaa gacgcctacc ccgattacct accgcgtgcc Aatggcatcc 2580 gcccaggtca agtcagccgt gctcctcgcc ggactgaaca ctccgggcat caccacggtg 2640 - . - . atcgagccca tcatgaccag ggatcatacc gaaaagatgc ttcaggggtt tggcgccaac 2700

I ctgacggtcg agacggacgc tgacggcgtc aggaccatcc gccttgaggg caggggtaaa 2760 ctgactggcc aagtcatcga tgttccggga gacccgtcgt ccacggcctt cccgttggtt 2820 .... , gcggcgctgc tcgtgccggg gagtgacgtg accatcctga acgtccteat gaacccgacc 2880 aggaccggcc tgatcctcac gcttcaggag atgggagccg acatcgaggt gatcaacccg 2940 cgcctggcag gcggtgaaga cgttgcggat etgcgcgtgc gctcctctac cctgaagggc 3000 gtgacggtcc cggaagatcg cgcgccgtcc atgatagacg agtatcctat tctggccgtc 3060 gccgctgcgt tcgccgaagg ggccacggtc atgaacggtc ttgaggaact ccgcgtgaag 3120 gaatcggatc gcctgtcggc ggtggccaat ggcctgaagc tcaacggtgt tgactgcgac 31B0 gagggtgaga cctcactcgt ggtccgtggc cggcctgatg gcaagggcct cggcaacgcc 3240 • . · agtggagcgg ccgtcgccac gcacctcgat catcgcatcg cgatgtcctt cttggtgatg 3300 ggtctcgtct cagagaaccc ggtgaccgtc gatgacgcca cgatgatagc gacgagcttc 3360 ccagagttca tggatctgat ggcgggcctc ggggccaaga tcgaactgtc tgacacgaag 3420 gccgcttgaa ttcccgatcg ttcaaacatt tggcaataaa gtttcttaag attgaatcct 3480 gttgccggtc ttgcgatgat tatcatataa tttctgttga attacgttaa gcatgtaata 3540 attaacatgt aatgcatgac gttatttatg agatgggttt ttatgattag agtcccgcaa 3600 . ·. ttatacattt aatacgcgat agaaaacaaa atatagcgcg caaactagga taaattatcg 3660 cgcgcggtgt catctatgtt actagatcgg ggatggggaa ttcggtacca agcttaacat 3720 • ... agactactta cataaatgag agctaattcg cgagacaaat tttttaagac taattaatcc 3780 atatgagaga atatttactg tagcatcaca taggctaatc attgataaat taggctcaca 3840 tagattcgta gtgtgaatca gtctagggtt atagaatggg ttttgtcatt agtctacgtt 3900 taatacttct aattggtgtt caaacatccg atgtgacagg gactaaagag tttcagtccc 3960 atccaaacac cccctcagtt tcgactgatg taacacctat atagtgttga cgtggcactt 4020 atatagtaaa aaaaaacatt gtggaaccca cgtcaacacc cctctctttc ccctcctctc 4050 ccccttcctc tttcccatcc tctaaccctt catcatctct ctctttcctc ctcctcgtta 4140 gcacacgccg ccgctgctct cctcctcatc catgtcgtcg aacccgtctt ccccaggcag 4200 taacatggag actgagagcc caaccaccgt cgcggcaatg acgtgaagct ccgactctga 4260 ccgcgatgac aagctggcca cctctigttgc cgacgacacc ctggtgcctt ctttctttct 4320 147377.doc -6- 201040274 atagcgatgg ccacgccgcc agttactttt g &lt;210&gt; 7 &lt;211&gt; 28 &lt;212&gt; DNA &lt;213&gt;人工序列 &lt;220&gt; &lt;223&gt;化學合成之寡核苷酸PCR引子 &lt;400&gt; 7I ctgacggtcg agacggacgc tgacggcgtc aggaccatcc gccttgaggg caggggtaaa 2760 ctgactggcc aagtcatcga tgttccggga gacccgtcgt ccacggcctt cccgttggtt 2820 ...., gcggcgctgc tcgtgccggg gagtgacgtg accatcctga acgtccteat gaacccgacc 2880 aggaccggcc tgatcctcac gcttcaggag atgggagccg acatcgaggt gatcaacccg 2940 cgcctggcag gcggtgaaga cgttgcggat etgcgcgtgc gctcctctac cctgaagggc 3000 gtgacggtcc cggaagatcg cgcgccgtcc atgatagacg agtatcctat tctggccgtc 3060 gccgctgcgt tcgccgaagg ggccacggtc atgaacggtc ttgaggaact ccgcgtgaag 3120 gaatcggatc gcctgtcggc ggtggccaat ggcctgaagc tcaacggtgt tgactgcgac 31B0 gagggtgaga cctcactcgt ggtccgtggc cggcctgatg gcaagggcct cggcaacgcc 3240 •. · agtggagcgg ccgtcgccac gcacctcgat catcgcatcg cgatgtcctt cttggtgatg 3300 ggtctcgtct cagagaaccc ggtgaccgtc gatgacgcca cgatgatagc gacgagcttc 3360 ccagagttca tggatctgat ggcgggcctc ggggccaaga tcgaactgtc tgacacgaag 3420 gccgcttgaa ttcccgatcg ttcaaacatt tggcaataaa gtttcttaag attgaatcct 3480 Gttgccggtc ttgcgatgat tatcatataa tttctgttga attacgttaa gcat gtaata 3540 attaacatgt aatgcatgac gttatttatg agatgggttt ttatgattag agtcccgcaa 3600. ·. ttatacattt aatacgcgat agaaaacaaa atatagcgcg caaactagga taaattatcg 3660 cgcgcggtgt catctatgtt actagatcgg ggatggggaa ttcggtacca agcttaacat 3720 • ... agactactta cataaatgag agctaattcg cgagacaaat tttttaagac taattaatcc 3780 atatgagaga atatttactg tagcatcaca taggctaatc attgataaat taggctcaca 3840 tagattcgta gtgtgaatca gtctagggtt atagaatggg ttttgtcatt agtctacgtt 3900 taatacttct aattggtgtt caaacatccg atgtgacagg gactaaagag tttcagtccc 3960 atccaaacac cccctcagtt tcgactgatg taacacctat atagtgttga cgtggcactt 4020 atatagtaaa aaaaaacatt gtggaaccca cgtcaacacc cctctctttc ccctcctctc 4050 ccccttcctc tttcccatcc tctaaccctt catcatctct ctctttcctc ctcctcgtta 4140 gcacacgccg ccgctgctct cctcctcatc catgtcgtcg aacccgtctt ccccaggcag 4200 taacatggag actgagagcc caaccaccgt cgcggcaatg acgtgaagct ccgactctga 4260 ccgcgatgac aagctggcca cctctigttgc cgacgacacc ctggtgcctt ctttctttct 4320 147377.doc -6- 201040274 atagcgatgg ccacgccgcc agt Tactttt g &lt;210&gt; 7 &lt;211&gt; 28 &lt;212&gt; DNA &lt;213&gt; Artificial sequence &lt;220&gt;&lt;223&gt; Chemically synthesized oligonucleotide PCR primer &lt;400&gt;

taaggaagac cataatagag aatccaaa &lt;210&gt; 8 &lt;211&gt; 22 &lt;212&gt; DNA ;&lt;213&gt;.人工序列 &lt;220&gt;Taaggaagac cataatagag aatccaaa &lt;210&gt; 8 &lt;211&gt; 22 &lt;212&gt;DNA;&lt;213&gt;. Artificial sequence &lt;220&gt;

&lt;223&gt;化學合成之寡核苷酸PCR引子 &lt;400&gt; 8 gacctgcaga agcttgttaa eg &lt;210&gt; 9 &lt;211&gt; 17 &lt;212&gt; DNA &lt;213&gt;人工序列 &lt;220&gt; &lt;223&gt;化學合成之寡核苷酸PCR引子 &lt;400&gt; 9 aggatacaac caagctt&lt;223&gt; Chemically synthesized oligonucleotide PCR primer &lt;400&gt; 8 gacctgcaga agcttgttaa eg &lt;210&gt; 9 &lt;211&gt; 17 &lt;212&gt; DNA &lt;213&gt; Artificial sequence &lt;220&gt;&lt;223&gt; Chemically synthesized oligonucleotide PCR primer &lt;400&gt; 9 aggatacaac caagctt

&lt;210&gt; 10 &lt;211&gt; 25 &lt;212&gt; DNA i&lt;213&gt;‘人工序列 &lt;220&gt; &lt;223&gt;化學合成之寡核苷酸PCR引子 &lt;400&gt; 10 egettgaatt cccgatcgtt caaac &lt;210&gt; 11 &lt;211&gt; 24 &lt;212&gt; DNA &lt;Π3&gt;人工序列 &lt;220&gt; &lt;223&gt;化學合成之寡核苷酸PCR引子 &lt;400&gt; 11 ggctctcagt ctccatgtta ctgc 147377.doc 201040274 &lt;210&gt; Ϊ2 &lt;211&gt; 24 &lt;212&gt; DNA &lt;213&gt;人工序列 &lt;220&gt; &lt;223&gt;化學合成之募核苷酸PCR引子 &lt;400&gt; 12 gaagacgtgg ttggaacgtc ttct &lt;210&gt; 13 &lt;211&gt; 24 &lt;212&gt; DNA &lt;213&gt;人工序列 &lt;220&gt; &lt;223&gt;化學合成之寡核苷酸PCR引子 &lt;400&gt; 13 cggaccatca catcaatcca cttg &lt;210&gt; 14 &lt;211&gt; 24 &lt;212&gt; DNA &lt;213&gt;人工序列 &lt;220&gt; &lt;223&gt;化學合成之寡核苷酸PCR引子 &lt;400&gt; 14 gattgaatcc tgttgccggt cttg &lt;210&gt; 15 &lt;211&gt; 24 &lt;212&gt; DNA &lt;213&gt;人工序列 &lt;220&gt; &lt;223&gt;化學合成之寡核苷酸PCR引子 &lt;400&gt; 15 cagtggcaaa tcgtagacgt gtga 147377.doc&lt;210&gt; 10 &lt;211&gt; 25 &lt;212&gt; DNA i&lt;213&gt; 'Artificial sequence&lt;220&gt;&lt;223&gt; Chemically synthesized oligonucleotide PCR primer&lt;400&gt; 10 egettgaatt cccgatcgtt caaac &lt;210&gt 11 &lt;211&gt; 24 &lt;212&gt; DNA &lt;Π3&gt; Artificial sequence &lt;220&gt;&lt;223&gt; Chemically synthesized oligonucleotide PCR primer &lt;400&gt; 11 ggctctcagt ctccatgtta ctgc 147377.doc 201040274 &lt;210&gt Ϊ2 &lt;211&gt; 24 &lt;212&gt; DNA &lt;213&gt;Artificial sequence &lt;220&gt;&lt;223&gt; Chemical synthesis of nucleotide primers &lt;400&gt; 12 gaagacgtgg ttggaacgtc ttct &lt;210&gt; 13 &lt; 211 &gt; 24 &lt;212&gt; DNA &lt;213&gt;Artificial sequence &lt;220&gt;&lt;223&gt; Chemically synthesized oligonucleotide PCR primer &lt;400&gt; 13 cggaccatca catcaatcca cttg &lt;210&gt; 14 &lt;211&gt; 24 &lt;;212&gt; DNA &lt;213&gt; Artificial sequence &lt;220&gt;&lt;223&gt; Chemically synthesized oligonucleotide PCR primer &lt;400&gt; 14 gattgaatcc tgttgccggt cttg &lt;210&gt; 15 &lt;211&gt; 24 &lt;212&gt; DNA &lt;213&gt;Artificial sequence &lt;220&gt;&lt;223&gt; Nucleotide PCR primers &lt; 400 &gt; 15 cagtggcaaa tcgtagacgt gtga 147377.doc

Claims (1)

201040274 七、申請專利範圍: 1. 一種DNA分子,其包含: a. 具有選自由 SEQ ID NO: 1、SEQ ID NO: 2、SEQ ID NO: 3及SEQ ID NO: 4組成之群之序列的聚核苷酸分子; b. 具有SEQ ID NO: 3的核苷酸位置565-584之至少15個 鄰接核苷酸之序列的聚核苷酸分子,· c·具有SEQ ID NO: 4的核普酸位置626-645之至少11個 鄰接核苷酸之序列的聚核苷酸分子;或 d_互補於(a)、(b)或(c)之序列。 2·如請求項1之DNA分子,其包含SEQ ID NO: 6之至少 90%。 3. 如請求項1之DNA分子’其中該DNA分子來源於品系 (event) 17053。 4. 如請求項1之DNA分子,其中該DNA分子包含於包含品 系17053之稻米植物、植物細胞、種子、子代植物、植 物部分或商品中,包含品系17053之代表性種子樣本已 寄存在ATCC登記號PTA-9843。 5·如請求項1之DNA分子,其中該DNA分子為品系17〇53之 模板分子所產生的擴增子。 6. —種鑑定品系17053之存在之聚核苷酸探針,其中該探 針具有足夠長度以結合選自由SEQ ID NO: 1及SEQ ID NO: 2組成之群之序列的至少11個鄰接核苷酸序列及其 互補序列。 7_ —對DNA分子,其由第一 DNA分子及不同於該第一 dna 147377.doc 201040274 分子之第二DNA分子組成,其中該等DNA分子具有SEQ ID NO: 6之足夠長度鄰接核苷酸之核苷酸序列或其互補 序列,當與米品系17053之模板一起用於擴增反應時用 作DNA引子,以產生鑑定樣本中米品系17053之擴增 子。 8. 如請求項7之DNA分子對,其中該擴增子包含選自由SEQ ID NO: 1及SEQ ID NO: 2組成之群之核苷酸序列及其互 補序列。 9. 一種偵測米品系17053之DNA分子存在的方法,其包 含: a. 使DNA樣本接觸如請求項7之DNA分子對; b. 進行足以產生擴增子之擴增反應,該擴增子包含具 有選自由SEQ ID NO: 1及SEQ ID NO: 2組成之群之序列 的至少11個鄰接核苷酸及其互補序列之聚核苷酸分子; 及 c. 偵測該DNA擴增子, 其中對該DNA擴增子之偵測係鑑定該DNA樣本中該米 品系1705 3之DNA分子的存在。 10. —種偵測樣本中存在包含選自由SEQ ID NO: 3或SEQ ID NO: 4組成之群之核苷酸序列的DNA分子之方法,其包 含: a.使樣本接觸一種包含選自由SEQ ID NO: 1及SEQ ID NO: 2組成之群之聚核苷酸序列及其互補序列的DNA探 針,其中該DNA探針在嚴格雜交條件下與包含選自由 147377.doc 201040274 SEQ ID NO: 3或SEQ ID NO·· 4組成之群之核苷酸序列的 DNA分子雜交且在該等嚴格雜交條件下不與不包含選自 由SEQ ID NO: 3或SEQ ID NO: 4組成之群之核苷酸序列 的DNA分子雜交; b. 使該樣本及該DNA探針經嚴格雜交條件;及 c. 偵測該DNA探針與該包含選自由SEQ ID NO: 3或 SEQ ID NO: 4組成之群之核苷酸序列的DNA分子之雜 交。 11 · 一種DNA偵測套組,其包含至少一種DNA分子,該DNA 分子包含具有SEQ ID NO: 6之足夠長度鄰接核苷酸序列 的核苷酸序列及其互補序列,以用作特異性偵測米品系 17053之DNA存在的DNA引子或探針,其中該DNA之偵 測係鑑定樣本中該米品系17053之存在。 12. 如請求項11之DNA偵測套組,其中該DNA分子包含SEQ ID NO: 1或SEQ ID NO: 2之至少15個鄰接核苷酸或其互201040274 VII. Patent Application Range: 1. A DNA molecule comprising: a. having a sequence selected from the group consisting of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3 and SEQ ID NO: 4. a polynucleotide molecule; b. a polynucleotide molecule having the sequence of at least 15 contiguous nucleotides of nucleotide positions 565-584 of SEQ ID NO: 3, c· having the nucleus of SEQ ID NO: A polynucleotide molecule having a sequence of at least 11 contiguous nucleotides at positions 626-645; or d_ complementary to the sequence of (a), (b) or (c). 2. The DNA molecule of claim 1, which comprises at least 90% of SEQ ID NO: 6. 3. The DNA molecule of claim 1 wherein the DNA molecule is derived from an event 17053. 4. The DNA molecule of claim 1, wherein the DNA molecule is contained in a rice plant, plant cell, seed, progeny plant, plant part or commodity comprising line 17053, and a representative seed sample comprising line 17053 is deposited at the ATCC Registration number PTA-9843. 5. The DNA molecule of claim 1, wherein the DNA molecule is an amplicon produced by a template molecule of line 17〇53. 6. A polynucleotide probe for the identification of line 17053, wherein the probe is of sufficient length to bind at least 11 contiguous nucleus of a sequence selected from the group consisting of SEQ ID NO: 1 and SEQ ID NO: 2. The nucleotide sequence and its complement. a DNA molecule consisting of a first DNA molecule and a second DNA molecule different from the first DNA 147377.doc 201040274 molecule, wherein the DNA molecule has a sufficient length of contiguous nucleotides of SEQ ID NO: 6. The nucleotide sequence or its complement, when used in conjunction with the template for rice line 17053 for amplification reactions, serves as a DNA primer to generate an amplicon of the rice line 17053 in the identified sample. 8. The DNA molecule pair of claim 7, wherein the amplicon comprises a nucleotide sequence selected from the group consisting of SEQ ID NO: 1 and SEQ ID NO: 2, and a complement thereof. 9. A method of detecting the presence of a DNA molecule of rice line 17053 comprising: a. contacting a DNA sample with a pair of DNA molecules as claimed in claim 7; b. performing an amplification reaction sufficient to produce an amplicon, the amplicon a polynucleotide molecule comprising at least 11 contiguous nucleotides selected from the group consisting of SEQ ID NO: 1 and SEQ ID NO: 2, and complementary sequences thereof; and c. detecting the DNA amplicon, Wherein the detection of the DNA amplicon identifies the presence of the DNA molecule of the rice line 1705 3 in the DNA sample. 10. A method of detecting the presence of a DNA molecule comprising a nucleotide sequence selected from the group consisting of SEQ ID NO: 3 or SEQ ID NO: 4, comprising: a. contacting the sample with an inclusion selected from the group consisting of ID NO: 1 and a DNA probe of the nucleotide sequence of the group consisting of SEQ ID NO: 2 and a complementary sequence thereof, wherein the DNA probe is under stringent hybridization conditions and comprises a SEQ ID NO: selected from 147377.doc 201040274 SEQ ID NO: 3 or a DNA molecule of the nucleotide sequence of the group consisting of SEQ ID NO. 4 hybridizes and does not comprise a core selected from the group consisting of SEQ ID NO: 3 or SEQ ID NO: 4 under such stringent hybridization conditions DNA molecule hybridization of the nucleotide sequence; b. subjecting the sample and the DNA probe to stringent hybridization conditions; and c. detecting the DNA probe and the inclusion comprising a composition selected from the group consisting of SEQ ID NO: 3 or SEQ ID NO: Hybridization of DNA molecules of the nucleotide sequence of the population. 11 . A DNA detection kit comprising at least one DNA molecule comprising a nucleotide sequence having a contiguous nucleotide sequence of sufficient length of SEQ ID NO: 6 and a complement thereof for use as a specificity detector A DNA primer or probe present in the DNA of the test line 17053, wherein the detection of the DNA identifies the presence of the rice line 17053 in the sample. 12. The DNA detection kit of claim 11, wherein the DNA molecule comprises at least 15 contiguous nucleotides of SEQ ID NO: 1 or SEQ ID NO: 2 or 補序列。 13. 如請求項11之DNA偵測套組,其中該套組採用一種包含 以下之方法: a. 使樣本接觸如請求項7之DNA分子對; b. 進行足以產生包含SEQ ID NO: 1或SEQ ID NO: 2之 至少15個鄰接核苷酸或其互補序列之擴增子的核酸擴增 反應;及 c. 偵測該擴增子。 14. 一種包含品系17053之稻米植物、種子或其部分,其中 147377.doc 201040274 包含品系17053之代表性種子樣本已寄存在AT(:c登記號 PTA-9843。 ° 15.如請求項14之稻米植物、種子或其部分,其中該植物或 其部分對草甘膦(glyphGSate)除草劑之處理具有耐受性。 16·如請求項14之稻米植物或種子,其中該稻米植物或種子 為具有至少一個包含品系17〇53之親本的雜交種,包含 品系17053之代表性種子樣本已寄存在ATCC登記號ρτΑ_ 9843 ° 17. —種由如請求項14之種子產生的米商品,其中該商品包 含該品系17053。 18_如請求項17之米商品,其進一步定義為選自由完整或經 加工之米種子、動物飼料、油、粗粉(meal)、細粉 (flour)碎片、糖、爆米花(pUffed Hce)、乳、乳路、 紙、乳膏、酒 '乙醇(alcohol)、生物質及燃料產品組成 之群。 19. 如請求項14之稻米植物部分,其定義為細胞、花粉、胚 珠、莢、花、根組織、莖組織或葉組織。 20. 如請求項14之稻米植物,其進一步定義為包含該品系 17053之稻米植物的任一代之子代植物,其中該子代植 物包含品系17053。 21. —種含有品系17053的稻米植物或其部分,其能夠產生 鑑疋品糸17053之擴增子。 22. 如請求項21之稻米植物’其中該擴增子包含SEq iD N〇: 1 或 SEQ ID NO: 2。 147377.doc 201040274 23. —種含有品系17〇53之 子’其中該種子能夠產生鑑定 品系17 0 5 3之.擴增子。 24. 如請求項23之米種子,, 其中δ亥擴增子包含SEQ id NO· 1 或 SEQ ID NO: 2。 25. 如請求項18之完整或經 刀工之未種子、動物飼料、油、 粗粉、細粉、碎片、糠、爆米花、乳、乳路、紙、乳 β /酉乙醇&amp;物質及燃料產品,其進-步定義為包 Ο 含一種在舰擴增方法中測試時產生鑑定品系丨7053之 擴增子的核酸,該擴拇早合人CT^ τ 擴曰子包3 SEQ ID NO: 1或SEQ ID NO·· 2。 26.-種產生耐受草甘膦除草劑之稻米植物的方法,其包含 將α口系1 7〇53引入該植物之基因體中。- -27·如請求項26之方法,其定義為包含以下步驟: Μ吏包含品系17053之第一稻米植物與缺之品系17〇53 之第二稻米植物雜交產生子代植物;及 〇 b.選擇至少一種包含該品系17053且耐受草甘膦之子一 代植物。 28. 如凊求項27之方法,其進一步包含使該子一代植物自交 產生子二代植物及選擇至少一種該品系i 7〇53之同型接 合(homozygous)之第一植物。 29. 種耐爻草甘膦之稻米植物、種子或其含有DNA之部 分’其包含草甘膦抗性CP4 EPSPS蛋白質且能夠產生鑑 定品系17053之擴增子。 3 0. ~種產生米商品之方法,其包含: 147377.doc 201040274 a·獲得如請求項14之稻米植物或其部分;及 b·由該稻米植物或其部分產生米商品。 31·如請求項3〇之方法, 、, Τ °亥商1113係選自由完整或經加工 之米種子、動物飼料 、〜一 由粗私、細粉、碎片、糠、爆 米化、乳、乳赂、紙、乳客、、、而 孔月/西、乙醇、生物質及燃料 產品組成之群。 3 2 · 一種控制包含品系17 G 5 3之稻米植物之田地中雜草生長 之方法,該方法包含以有效控制該雜草生長之量的草甘 膦處理該田地,其中該等稻米植物顯示對該草甘膊之对 受性。 33.如請求項32之方法’其中該草甘膦之有效量為約u镑至 約4.5磅/英畝。 3=請求項29之財受草甘膦之稻米植物或其含有譲之部 为,其中該鑑定品系17053之擴增子包含seq ι〇 工或 SEQ ID NO: 2。 35. —種包含品系17〇53之無生命植物材料包含品系nos] 之代表性種子樣本已寄存在ATCC登記號ρτΑ_9843,該 植物材料包含選自由SEQ ID Ν〇:丨、SEQ 1〇 ν〇: 2及其 互補序列組成之群之dna分子。 36· —種微生物,其包含一種具有選自由seq出工、 SEQ ID 2及其互補序列組成之群之核芽酸序列的聚 核音酸分子。 37.如請求項36之微生物,其中該微生物為植物細胞。 147377.docComplement the sequence. 13. The DNA detection kit of claim 11, wherein the kit comprises a method comprising: a. contacting the sample with a DNA molecule pair as claimed in claim 7; b. performing sufficient to generate SEQ ID NO: 1 or a nucleic acid amplification reaction of an amplicon of at least 15 contiguous nucleotides of SEQ ID NO: 2 or a complement thereof; and c. detecting the amplicon. 14. A rice plant, seed or part thereof comprising line 17053, wherein 147377.doc 201040274 comprises a representative seed sample of line 17053 deposited at AT (:c accession number PTA-9843. ° 15. rice as claimed in claim 14 a plant, a seed or a part thereof, wherein the plant or a part thereof is tolerant to the treatment of a glyphosate (glyphGSate) herbicide. The rice plant or seed of claim 14, wherein the rice plant or seed has at least A hybrid comprising a parent of line 17〇53, a representative seed sample comprising line 17053 has been deposited with the ATCC registration number ρτΑ_ 9843 ° 17. A rice product produced by the seed of claim 14 wherein the commodity comprises The line is 17053. 18_ The item of claim 17 is further defined as selected from the group consisting of whole or processed rice seeds, animal feed, oil, meal, flour, sugar, popcorn (pUffed Hce), milk, milk road, paper, cream, wine 'alcohol, biomass and fuel products. 19. The rice plant part of claim 14 is defined as fine , pollen, ovule, pod, flower, root tissue, stem tissue or leaf tissue. 20. The rice plant of claim 14, further defined as a progeny plant of any generation comprising the rice plant of the line 17053, wherein the progeny The plant comprises line 17053. 21. A rice plant or a part thereof containing line 17053 capable of producing an amplicon of 疋17053. 22. The rice plant of claim 21, wherein the amplicon comprises SEq iD N〇: 1 or SEQ ID NO: 2. 147377.doc 201040274 23. A subfamily containing the line 17〇53, wherein the seed is capable of producing an amplicon of the identification line 17 0 5 3. 24. Rice seed, wherein the δ hai amplicon comprises SEQ id NO· 1 or SEQ ID NO: 2. 25. Complete or knife-free seed, animal feed, oil, meal, fine powder, debris as claimed in claim 18. , 糠, popcorn, milk, milk road, paper, milk β / 酉 ethanol &amp; material and fuel products, the further step is defined as the inclusion of a type of identification system 丨7053 when tested in the ship amplification method Increased nucleic acid, the expansion of the thumb and the human CT ^ τ expands the scorpion package 3 SEQ ID NO: 1 or SEQ ID NO. 2. 26. A method of producing a glyphosate-tolerant herbicide-tolerant rice plant comprising introducing an α-portage 1 7〇53 into the In the genome of a plant. - -27. The method of claim 26, which is defined as comprising the steps of: Μ吏 hybridizing the first rice plant comprising line 17053 with the second rice plant of the defective line 17〇53 to produce progeny Plant; and 〇b. Select at least one generation of plants comprising the line 17053 and tolerant to glyphosate. 28. The method of claim 27, further comprising self-containing the progeny plant to produce a sub-secondary plant and selecting at least one homozygous first plant of the line i 7〇53. 29. A glyphosate resistant rice plant, seed or DNA-containing portion thereof comprising a glyphosate resistant CP4 EPSPS protein and capable of producing an amplicon of the identification line 17053. A method of producing a rice product, comprising: 147377.doc 201040274 a. obtaining a rice plant or a part thereof as claimed in claim 14; and b. producing a rice product from the rice plant or a part thereof. 31. The method of claim 3, , °Hai Shang 1113 is selected from whole or processed rice seeds, animal feed, ~ one by coarse, fine powder, debris, glutinous rice, popped rice, milk, A group consisting of breast, paper, dairy, and Kongyue/west, ethanol, biomass, and fuel products. 3 2 · A method of controlling weed growth in a field comprising a rice plant of line 17 G 5 3, the method comprising treating the field with glyphosate in an amount effective to control the growth of the weed, wherein the rice plants exhibit a The grass is the right one. 33. The method of claim 32 wherein the effective amount of glyphosate is from about U pounds to about 4.5 pounds per acre. 3 = claim 29 of the glyphosate-bearing rice plant or its scorpion-containing portion, wherein the amplicon of the identification line 17053 comprises seq ι〇 or SEQ ID NO: 2. 35. A representative seed sample of an inaninal plant material comprising line 17〇53 comprising line nos] has been deposited with the ATCC accession number ρτΑ_9843, the plant material comprising selected from the group consisting of SEQ ID Ν〇: 丨, SEQ 1〇ν〇: 2 and its complementary sequence consisting of a group of dna molecules. 36. A microorganism comprising a polynucleic acid molecule having a nucleotide sequence selected from the group consisting of seq, SEQ ID 2 and the complement thereof. 37. The microorganism of claim 36, wherein the microorganism is a plant cell. 147377.doc
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