WO2016173540A1 - Herbicide-tolerant maize plant dbn9888, and nucleotide sequence and method for detecting same - Google Patents

Herbicide-tolerant maize plant dbn9888, and nucleotide sequence and method for detecting same Download PDF

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WO2016173540A1
WO2016173540A1 PCT/CN2016/080677 CN2016080677W WO2016173540A1 WO 2016173540 A1 WO2016173540 A1 WO 2016173540A1 CN 2016080677 W CN2016080677 W CN 2016080677W WO 2016173540 A1 WO2016173540 A1 WO 2016173540A1
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seq
nucleic acid
dna
complement
dbn9888
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French (fr)
Chinese (zh)
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康越景
郭明欣
刘海利
张成伟
丁德荣
焦国伟
魏雪松
汤波
夏祖灵
熊冠军
徐亮
鲍晓明
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北京大北农科技集团股份有限公司
北京大北农生物技术有限公司
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    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01NPRESERVATION OF BODIES OF HUMANS OR ANIMALS OR PLANTS OR PARTS THEREOF; BIOCIDES, e.g. AS DISINFECTANTS, AS PESTICIDES OR AS HERBICIDES; PEST REPELLANTS OR ATTRACTANTS; PLANT GROWTH REGULATORS
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    • C12N15/8275Glyphosate
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    • C12N15/8274Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for herbicide resistance
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    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8261Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield
    • C12N15/8271Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance
    • C12N15/8279Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance
    • C12N15/8286Phenotypically and genetically modified plants via recombinant DNA technology with agronomic (input) traits, e.g. crop yield for stress resistance, e.g. heavy metal resistance for biotic stress resistance, pathogen resistance, disease resistance for insect resistance
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    • C12Q2600/00Oligonucleotides characterized by their use
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Definitions

  • Glyphosate tolerance can be achieved by expression of a modified EPSPS.
  • the modified EPSPS has a lower affinity for glyphosate, and thus in the presence of glyphosate, EPSPS retains their catalytic activity, i.e., glyphosate tolerance is obtained.
  • transgene-specific events are currently identified by PCR using a pair of primers spanning the junction of the inserted transgene and flanking DNA, specifically a first primer comprising a flanking sequence and a second primer comprising an inserted sequence.
  • the nucleic acid sequence comprises SEQ ID NO: 1 or its complement, and/or SEQ ID NO: 2 or its complement.
  • the SEQ ID NO: 2 or its complement is a transgene Gene maize event DBN9888 is a 22-nucleotide sequence located near the insertion junction at the 3' end of the inserted sequence, the SEQ ID NO: 2 or its complement spanning the DNA of the 3' end of the inserted sequence
  • the flanking genomic DNA sequence of the sequence and the maize insertion site, comprising the SEQ ID NO: 2 or its complement can be identified as the presence of the transgenic maize event DBN9888.
  • the sample to be detected and the probe are hybridized under stringent hybridization conditions;
  • the DNA molecule comprises SEQ ID NO: 1 or the 1st to 11th of its complement Or a contiguous nucleotide at positions 12-22, or a contiguous nucleotide at positions 1-11 or 12-22 in SEQ ID NO: 2 or its complement.
  • the progeny plants that are tolerant to glyphosate are selected.
  • the present invention also provides a method of protecting a plant from damage caused by a herbicide, comprising applying a herbicide containing an effective amount of glyphosate and/or glufosinate to at least one transgenic corn.
  • the transgenic maize plant comprises in its genome a cell selected from the group consisting of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO : 6 and at least one nucleic acid sequence of the sequence of SEQ ID NO: 7, the transgenic maize plant having tolerance to a glyphosate herbicide and/or a glufosinate herbicide.
  • gene refers to a nucleic acid fragment that expresses a particular protein, including regulatory sequences preceding the coding sequence. (5' non-coding sequence) and regulatory sequence following the coding sequence (3' non-coding sequence).
  • Native gene refers to a gene that is naturally found to have its own regulatory sequences.
  • Chimeric gene refers to any gene that is not a native gene that contains regulatory and coding sequences that are not found in nature.
  • Endogenous gene refers to a native gene that is located in its natural location in the genome of an organism.
  • a “foreign gene” is a foreign gene that is present in the genome of an organism and does not originally exist, and also refers to a gene that is introduced into a recipient cell by a transgenic step.
  • a transformation program that causes random integration of foreign DNA results in transformants containing different flanking regions that are specifically contained by each transformant.
  • Transformants also contain unique junctions between heterologous insert DNA and segments of genomic DNA or between two segments of genomic DNA or between two heterologous DNAs.
  • "Joining” is the point at which two specific DNA fragments are joined. For example, the junction is present at a position where the insert DNA joins the flanking DNA. The junction is also present in the transformed organism, where the two DNA fragments are joined together in a manner modified from that found in the native organism.
  • "Joining DNA” and “joining region” refer to DNA containing a junction.
  • the 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) gene may be isolated from Agrobacterium tumefaciens sp. CP4 strain and may be optimized by codon or otherwise Polynucleotides encoding EPSPS for the purpose of increasing the stability and availability of transcripts in transformed cells.
  • the 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) gene can also be used as a selectable marker gene.
  • the gene gun transformation method is to bombard plant cells (particle-mediated biological bombardment transformation) with a vector containing foreign DNA.
  • the transgenic maize event DBN9888 which is tolerant to the glyphosate herbicide and the glufosinate herbicide, is cultured by first sexually crossing the first parent corn plant with the second parent corn plant, thereby producing a variety of A generation of progeny plants consisting of maize plants grown from the transgenic maize event DBN9888 and its progeny, the transgenic maize event DBN9888 and its progeny by utilizing the glyphosate herbicide and grass of the invention
  • the ammonium phosphine herbicide is obtained by transforming a tolerant expression cassette, and the second parent corn plant lacks tolerance to the glyphosate herbicide and/or glufosinate herbicide; then the glyphosate herbicide is selected And/or glufosinate herbicides are applied to tolerant progeny plants which can produce corn plants that are tolerant to glyphosate herbicides and glufosinate herbicides.
  • Primers and probes based on the flanking genomic DNA and insert sequences of the present invention can be determined by conventional methods, for example, by isolating a corresponding DNA molecule from a plant material derived from the transgenic maize event DBN9888, and determining the nucleic acid sequence of the DNA molecule.
  • the DNA molecule comprises a transgene insert and a maize genome flanking region, and a fragment of the DNA molecule can be used as a primer or probe.
  • nucleic acid molecules when each nucleotide of one nucleic acid molecule is complementary to a corresponding nucleotide of another nucleic acid molecule, the two nucleic acid molecules are said to exhibit "complete complementarity.”
  • Two nucleic acid molecules are said to be “minimally complementary” if they are capable of hybridizing to one another with sufficient stability such that they anneal under at least conventional "low stringency” conditions and bind to each other.
  • two nucleic acid molecules are said to be “complementary” if they are capable of hybridizing to one another with sufficient stability such that they anneal under conventional "highly stringent” conditions and bind to each other.
  • a nucleic acid molecule of the invention is under highly stringent conditions with SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 6 and one or more of the nucleic acid molecules of SEQ ID NO: 7 or a complement thereof, or any of the above sequences, specifically hybridize.
  • a preferred marker nucleic acid molecule has SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 6 or SEQ ID NO: 7 or its complement, or any fragment of the above sequence.
  • Another preferred marker nucleic acid molecule of the invention has 80% to SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 6 or SEQ ID NO: 7 or a complement thereof, or any fragment of the above sequence 100% or 90% to 100% sequence identity.
  • SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 6 and SEQ ID NO: 7 can be used as markers in plant breeding methods to identify progeny of genetic crosses.
  • Hybridization of the probe to the target DNA molecule can be detected by any method known to those skilled in the art including, but not limited to, fluorescent labeling, radioactive labeling, antibody labeling, and chemiluminescent labeling.
  • the primer pair can be derived from a flanking genomic sequence inserted on both sides of the DNA to produce an amplicon comprising the entire inserted nucleotide sequence.
  • One of the primer pairs derived from the plant genome sequence can be located at a distance from the inserted DNA sequence, which can range from one nucleotide base pair to about 20,000 nucleotide base pairs.
  • the use of the term "amplicon" specifically excludes primer dimers formed in DNA thermal amplification reactions.
  • Particularly identifying primers useful in DNA amplification methods SEQ ID NO: 8 and SEQ ID NO: 9, which amplify a diagnostic amplicon homologous to a portion of the 5' transgene/genomic region of transgenic maize event DBN9888, wherein the amplicon comprises SEQ ID NO:1 .
  • Other DNA molecules used as DNA primers may be selected from SEQ ID NO:5.
  • Taqman is described as a method for detecting and quantifying the presence of DNA sequences, which is described in detail in the instructions provided by the manufacturer. Briefly exemplified, a FRET oligonucleotide probe spanning the inserted DNA sequence and the adjacent genomic flanking binding site is designed.
  • the FRET The probe and PCR primers (one primer used in each of the inserted sequences and adjacent flanking genomic sequences) were subjected to a circular reaction in the presence of a thermostable polymerase and dNTPs.
  • Hybridization of the FRET probe results in cleavage of the fluorescent and quenching moieties on the FRET probe and release of the fluorescent moiety.
  • the generation of the fluorescent signal represents the presence of an insert/flanking sequence indicating that amplification and hybridization were successful.
  • the DNA structure contained in the maize genome and the transgenic insert sequence described in Figure 1 and Table 1 and the maize genome binding site comprises: the maize plant DBN9888 flanking genomic region located at the 5' end of the transgene insert, from the left side of the Agrobacterium A portion of the border region (LB) is inserted into the sequence, and the first expression cassette is operably linked to the glufosinate tolerance of the Streptomyces by the tandem repeat of the cauliflower mosaic virus 35S promoter (pr35S) containing the enhancer region
  • the phosphinothricin N-acetyltransferase (cPAT) is operably linked to the cauliflower mosaic virus 35S terminator (t35S) and the second expression cassette consists of the rice actin 1 promoter (prOsAct1).
  • Dual-trait corn has the following advantages: 1) the ability to apply glyphosate-containing agricultural herbicides to corn crops for broad-spectrum weed control; 2) glufosinate-tolerant traits in combination with glufosinate herbicides (with grass) Glyphosate herbicide mixed or alternately used as a Non-selective means for efficient management of glyphosate-resistant weeds; 3) Herbicide-tolerant transgenic maize as non-anti-insect transgenic maize, planted in proportion to transgenic insect-resistant maize, can delay insect/pest generation Resistance; 4) Corn yield did not decrease.
  • SEQ ID NO: 3 A sequence of 960 nucleotides in length in the transgenic maize event DBN9888 located at the 5' end of the inserted sequence near the insertion junction;
  • SEQ ID NO: 5 The entire T-DNA sequence, the 5' and 3' flanking maize genomic sequences;
  • SEQ ID NO:7 is a sequence located within SEQ ID NO: 4 spanning the tNos terminator sequence and the DBN10006 construct DNA sequence;
  • SEQ ID NO: 25 probe for EPSPS in Southern blot hybridization assay
  • the vector DBN10006 was transformed into Agrobacterium LBA4404 (Invitrgen, Chicago, USA; Cat. No: 18313-015) by liquid nitrogen method, and 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) was used. Transformed cells are screened for selection markers.
  • Agrobacterium LBA4404 Invitrgen, Chicago, USA; Cat. No: 18313-015
  • EPSPS 5-enolpyruvylshikimate-3-phosphate synthase
  • an amplicon is produced by using at least one primer from SEQ ID NO: 3 or SEQ ID NO: 4, which is used in a PCR method to generate a diagnostic amplicon of the transgenic maize event DBN9888.
  • a maize DNA sample corresponding to a single amplicon of the second amplicon described for the hybrid genome can be diagnostically determined to determine the presence of the transgenic maize event DBN9888 in the sample, and the sample is present in relation to the transgenic maize plant DBN9888
  • the allele corresponding to the inserted DNA is produced by homozygous corn seed.
  • the aqueous layer was collected, and centrifuged at 4000 rpm for 5 minutes after the addition of 0.54 volumes of isopropyl alcohol to precipitate DNA. The supernatant was discarded and the DNA pellet was resuspended in 500 ⁇ L.
  • the DNA was incubated with 1 ⁇ L of 30 mg/ml LRNAase A for 30 minutes at 37 ° C, centrifuged at 4000 rpm for 5 minutes, and passed in the presence of 0.5 volume of 7.5 M ammonium acetate and 0.54 volume of isopropanol. The DNA was precipitated by centrifugation at 14,000 rpm for 10 minutes. After discarding the supernatant, the precipitate was washed with 500 ⁇ L of 70% ethanol, and dried and resuspended in 100 ⁇ L of TE buffer.
  • Southern blot hybridization was set as follows: 20 sheets of thick blotted paper were placed in the pan on which 4 thin dry blotting papers were placed. One thin blotting paper was pre-wetted in 0.4 M NaOH and placed on the paper pile, followed by one Hybond-N+ transfer film (Amersham Pharmacia Biotech, #RPN303B) pre-wetted in 0.4 M NaOH. The gel is placed on top to ensure that there are no air bubbles between the gel and the membrane. Three additional pre-soaked blotting papers were placed on top of the gel and the buffer pan was filled with 0.4 M NaOH.
  • the transgenic corn event DBN9888 was treated as follows: 1) not spraying; 2) spraying the Roundup herbicide at the V3 leaf stage at a dose of 1680 g ae/ha (ae/ha means "active ingredient equivalent acid per hectare") Then, spray the Roundup herbicide at the same dose in the V8 period; 3) Spray the Basta herbicide at the V3 leaf stage at a dose of 800g ai/ha (ai/ha means “active ingredient per hectare”). The Basta herbicide was then sprayed again at the same dose in the V8 period.
  • Such as agricultural products or commodities can be produced by the genetically modified corn event DBN9888. If sufficient expression levels are detected in the agricultural product or commodity, the agricultural product or commodity is expected to contain a nucleotide sequence capable of diagnosing the presence of the transgenic maize event DBN9888 material in the agricultural product or commodity.
  • the agricultural product or commodity includes, but is not limited to, corn oil, corn meal, cornmeal, corn gluten, tortilla, corn starch, and any other food product to be consumed as a food source for the animal, or otherwise as a swelling or cosmetic composition. The ingredients are used for cosmetic purposes and the like.
  • the seed corresponding to the genetically modified corn event DBN9888 was deposited on December 24, 2014 at the General Microbiology Center of China Microbial Culture Collection Management Committee (CGMCC, Address: Beijing No. 3, Beichen West Road, Chaoyang District, Institute of Microbiology, Chinese Academy of Sciences, 100101), classification: Maize (Zea mays), deposit number CGMCC No.10216, and converted to Budapest according to February 17, 2016 International deposit of the treaty. The deposit will be kept at the depository for 30 years.

Abstract

Provided are a nucleotide sequence for detecting a maize event DBN9888 existing in a biological sample and a detecting method therefor.

Description

除草剂耐受性玉米植物DBN9888及用于检测其的核酸序列和方法Herbicide-tolerant maize plant DBN9888 and nucleic acid sequence and method for detecting same
本申请要求于2015年04月30日提交中国专利局、申请号为201510219905.2、发明名称为“用于检测除草剂耐受性玉米植物DBN9888的核酸序列及其检测方法”的中国专利申请的优先权,其全部内容通过引用结合在本申请中。This application claims priority to Chinese Patent Application No. 201510219905.2, entitled "Nucleic Acid Sequence for Detection of Herbicide Tolerant Maize Plant DBN9888 and Its Detection Method", filed on April 30, 2015, Chinese Patent Application No. 201510219905.2 The entire content of which is incorporated herein by reference.
技术领域Technical field
本发明涉及一种用于检测除草剂耐受性玉米植物DBN9888的核酸序列及其检测方法,特别是涉及一种耐受草甘膦和草铵膦的玉米植物DBN9888和检测生物样品中是否包含特定转基因玉米事件DBN9888的DNA分子的方法。The present invention relates to a nucleic acid sequence for detecting a herbicide-tolerant corn plant DBN9888 and a method for detecting the same, in particular to a glyphosate-tolerant and glufosinate-tolerant corn plant DBN9888 and a test biological sample comprising specific Method of DNA molecule of transgenic maize event DBN9888.
背景技术Background technique
N-膦酰甲基甘氨酸,也称为草甘膦,是一种内吸传导型慢性广谱灭生性除草剂。草甘膦是5-烯醇丙酮酰莽草酸-3-磷酸合酶(EPSPS)的合成底物磷酸烯醇式丙酮酸(PEP)的竞争性抑制剂,可抑制PEP和3-磷酸莽草酸这两种底物在EPSPS催化下向5-烯醇丙酮酰莽草酸-3-磷酸莽草酸的转化,从而阻断芳香族氨基酸合成前体-莽草酸的合成途径,使蛋白质的合成受到干扰导致植物和细菌死亡。N-phosphonomethylglycine, also known as glyphosate, is a systemic, chronic broad-spectrum herbicide. Glyphosate is a competitive inhibitor of phosphoenolpyruvate (PEP), a synthetic substrate for 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS), which inhibits PEP and 3-phosphonic acid Conversion of the two substrates to 5-enolpyruvylshikimate-3-phosphoshikimic acid under EPSPS catalysis, thereby blocking the synthesis of the aromatic amino acid synthesis precursor-shikimate, causing the protein synthesis to interfere with the plant And the death of bacteria.
草甘膦耐受性可以通过表达修饰的EPSPS来实现。修饰的EPSPS对草甘膦具有更低的亲和性,因而在草甘膦存在的情况下,EPSPS保持了它们的催化活性,即获得了草甘膦耐受性。Glyphosate tolerance can be achieved by expression of a modified EPSPS. The modified EPSPS has a lower affinity for glyphosate, and thus in the presence of glyphosate, EPSPS retains their catalytic activity, i.e., glyphosate tolerance is obtained.
玉米(Zea mays L.)在世界上很多地区都是主要的粮食作物。在玉米生产中除草剂耐受性是一项重要的农艺性状,特别是对草甘膦除草剂的耐受性。玉米对草甘膦除草剂的耐受性可以通过转基因的方法使草甘膦除草剂耐受型基因(EPSPS,CP4)在玉米植物中表达而获得,例如玉米事件NK603、玉米事件MON88017等。Maize (Zea mays L.) is a major food crop in many parts of the world. Herbicide tolerance in corn production is an important agronomic trait, especially for glyphosate herbicides. The tolerance of maize to glyphosate herbicides can be obtained by transgenic methods to express glyphosate herbicide tolerance gene (EPSPS, CP4) in maize plants, such as maize event NK603, maize event MON88017 and the like.
草甘膦耐受性耕种系统的普遍采用和草甘膦使用的日益增加已经导致近年来草甘膦抗性杂草的流行。在种植者面对草甘膦抗性杂草或向更难以控制的 杂草物种转变的地区,种植者可以通过与能够控制遗漏杂草的其他除草剂混合或交替使用来补偿草甘膦的弱点。The widespread adoption of glyphosate-tolerant tillage systems and the increasing use of glyphosate have led to the prevalence of glyphosate-resistant weeds in recent years. In the face of growers facing glyphosate resistant weeds or more difficult to control In areas where weed species are transformed, growers can compensate for the weakness of glyphosate by mixing or alternating with other herbicides that can control missing weeds.
草铵膦是膦丝菌素类除草剂中的一种非系统性、非选择性除草剂。主要用于一年生或多年生阔叶杂草的出土后控制,是通过L-膦丝菌素(草铵膦中的活性成分)对谷氨酰胺合酶(一种对于植物中的氨解毒必需的酶)的不可逆抑制来控制杂草的。与草甘膦杀根不同,草铵膦先杀叶,通过植物蒸腾作用可以在植物木质部进行传导,其速效性间于百草枯和草甘膦之间。Glufosinate is a non-systemic, non-selective herbicide in phosphinothricin herbicides. Mainly used for post-emergence control of annual or perennial broad-leaved weeds, by L-phosphinothricin (the active ingredient in glufosinate) against glutamine synthase (an enzyme essential for ammonia detoxification in plants) ) irreversible inhibition to control weeds. Unlike glyphosate root killing, glufosinate first kills leaves and can be transported in the xylem of plants through plant transpiration, with a quick-acting effect between paraquat and glyphosate.
从链霉菌分离的酶膦丝菌素N-乙酰基转移酶(PAT)通过乙酰化催化L-膦丝菌素转化为其无活性形式。表达PAT的植物优化形式的基因已经在大豆中使用以赋予大豆对草铵膦除草剂的耐受性,例如大豆事件A5547-127。因此与草铵膦耐受性性状组合使用草铵膦除草剂可以作为一种有效管理草甘膦抗性杂草的非选择性手段。The enzyme phosphinothricin N-acetyltransferase (PAT) isolated from Streptomyces catalyzes the conversion of L-phosphinothricin to its inactive form by acetylation. A plant-optimized form of the gene expressing PAT has been used in soybeans to confer tolerance to glufosinate herbicides, such as soybean event A5547-127. Therefore, the use of glufosinate herbicides in combination with glufosinate tolerance traits can be a non-selective means of effectively managing glyphosate-resistant weeds.
同时,随着转基因抗虫玉米大面积种植,少量存活下来的昆虫/害虫经过几代繁殖后,可能产生抗性。抗除草剂转基因玉米作为非抗虫转基因玉米,与转基因抗虫玉米以一定比例一并种植,可以延缓昆虫/害虫产生抗药性。At the same time, with the large-scale cultivation of transgenic insect-resistant corn, a small number of surviving insects/pests may develop resistance after several generations of reproduction. Herbicide-tolerant transgenic corn is grown as a non-anti-insect transgenic corn in a certain ratio with transgenic insect-resistant corn, which can delay insect/pest resistance.
已知外源基因在植物体内的表达受到它们的染色体位置的影响,可能是由于染色质结构(如异染色质)或转录调节元件(如增强子)接近整合位点。为此,通常需要筛选大量的事件才有可能鉴定出可以商业化的事件(即导入的目标基因得到最优表达的事件)。例如,在植物和其他生物体中已经观察到导入基因的表达量在事件间可能有很大差异;在表达的空间或时间模式上可能也存在差异,如在不同植物组织之间转基因的相对表达存在差异,这种差异表现在实际的表达模式可能与根据导入的基因构建体中的转录调节元件所预期的表达模式不一致。因此,通常需要产生成百上千个不同的事件并从这些事件中筛选出具有以商业化为目的所预期的转基因表达量和表达模式的单一事件。具有预期的转基因表达量和表达模式的事件可用于采用常规育种方法通过有性异型杂交将转基因渗入到其他遗传背景中。通过这种杂交方式产生的后代保持了原始转化体的转基因表达特征。应用这种策略模式可以确保在许多品种中具有可靠的基因表达,而这些品种能很好的适应当地的生长条件。It is known that the expression of foreign genes in plants is influenced by their chromosomal location, possibly due to the proximity of the chromatin structure (such as heterochromatin) or transcriptional regulatory elements (such as enhancers) to the integration site. To this end, it is often necessary to screen a large number of events to identify events that can be commercialized (ie, events in which the introduced target gene is optimally expressed). For example, it has been observed in plants and other organisms that the amount of expression of the introduced gene may vary greatly from event to event; there may also be differences in spatial or temporal patterns of expression, such as relative expression of transgenes between different plant tissues. There is a difference in that the actual expression pattern may be inconsistent with the expression pattern expected from the transcriptional regulatory elements in the introduced gene construct. Therefore, it is often necessary to generate hundreds and thousands of different events and to screen out from these events a single event with the expected expression and expression pattern of the transgene for commercial purposes. Events with expected transgene expression levels and expression patterns can be used to infiltrate transgenes into other genetic backgrounds by sexual heterotypic hybridization using conventional breeding methods. The progeny produced by this hybridization maintain the transgene expression characteristics of the original transformants. The application of this strategy model ensures reliable gene expression in many varieties, and these varieties are well adapted to local growth conditions.
能够检测特定事件的存在以确定有性杂交的后代是否包含目的基因将是 有益的。此外,检测特定事件的方法还将有助于遵守相关法规,例如来源于重组农作物的食物在投入市场前需要获得正式批准和进行标记。通过任何熟知的多核苷酸检测方法来检测转基因的存在都是可能的,例如聚合酶链式反应(PCR)或利用多核苷酸探针的DNA杂交。这些检测方法通常集中于常用的遗传元件,例如启动子、终止子、标记基因等。因此,除非与插入的转基因DNA相邻的染色体DNA(“侧翼DNA”)的序列是己知的,上述这种方法就不能够用于区别不同的事件,特别是那些用相同的DNA构建体产生的事件。所以,目前常利用跨越了插入的转基因和侧翼DNA的接合部位的一对引物通过PCR来鉴定转基因特定事件,具体地说是包含侧翼序列的第一引物和包含插入序列的第二引物。Being able to detect the presence of a particular event to determine whether a progeny of sexual crosses contains the gene of interest will be benefit. In addition, methods for detecting specific events will also help to comply with regulations, such as foods derived from recombinant crops that require formal approval and labeling prior to being placed on the market. It is possible to detect the presence of a transgene by any well-known polynucleotide detection method, such as polymerase chain reaction (PCR) or DNA hybridization using a polynucleotide probe. These assays typically focus on commonly used genetic elements such as promoters, terminators, marker genes, and the like. Therefore, unless the sequence of the chromosomal DNA ("flanking DNA") adjacent to the inserted transgenic DNA is known, the above method cannot be used to distinguish different events, especially those produced using the same DNA construct. event. Therefore, transgene-specific events are currently identified by PCR using a pair of primers spanning the junction of the inserted transgene and flanking DNA, specifically a first primer comprising a flanking sequence and a second primer comprising an inserted sequence.
发明内容Summary of the invention
本发明的目的是提供一种用于检测除草剂耐受性玉米植物DBN9888的核酸序列及其检测方法,转基因玉米事件DBN9888对草甘膦除草剂和草铵膦除草剂具有较好的耐受性,且检测方法可以准确快速的鉴定生物样品中是否包含特定转基因玉米事件DBN9888的DNA分子。The object of the present invention is to provide a nucleic acid sequence for detecting herbicide-tolerant corn plant DBN9888 and a detection method thereof, and the transgenic corn event DBN9888 has good tolerance to glyphosate herbicide and glufosinate herbicide. And the detection method can accurately and quickly identify whether the biological sample contains the DNA molecule of the specific transgenic corn event DBN9888.
为实现上述目的,本发明提供了一种核酸序列,包括SEQ ID NO:3或其互补序列中至少11个连续的核苷酸、和/或SEQ ID NO:4或其互补序列中至少11个连续的核苷酸。To achieve the above object, the present invention provides a nucleic acid sequence comprising at least 11 contiguous nucleotides of SEQ ID NO: 3 or its complement, and/or at least 11 of SEQ ID NO: 4 or its complement Continuous nucleotides.
优选地,所述核酸序列包括SEQ ID NO:1或其互补序列、和/或SEQ ID NO:2或其互补序列。Preferably, the nucleic acid sequence comprises SEQ ID NO: 1 or its complement, and/or SEQ ID NO: 2 or its complement.
进一步地,所述核酸序列包括SEQ ID NO:3或其互补序列、和/或SEQ ID NO:4或其互补序列。Further, the nucleic acid sequence comprises SEQ ID NO: 3 or its complement, and/or SEQ ID NO: 4 or its complement.
更进一步地,所述核酸序列包括SEQ ID NO:5或其互补序列。Further, the nucleic acid sequence comprises SEQ ID NO: 5 or its complement.
所述SEQ ID NO:1或其互补序列为转基因玉米事件DBN9888中在插入序列的5’末端位于插入接合部位附近的一个长度为22个核苷酸的序列,所述SEQ ID NO:1或其互补序列跨越了玉米插入位点的侧翼基因组DNA序列和插入序列的5’末端的DNA序列,包含所述SEQ ID NO:1或其互补序列即可鉴定为转基因玉米事件DBN9888的存在。所述SEQ ID NO:2或其互补序列为转 基因玉米事件DBN9888中在插入序列的3’末端位于插入接合部位附近的一个长度为22个核苷酸的序列,所述SEQ ID NO:2或其互补序列跨越了插入序列的3’末端的DNA序列和玉米插入位点的侧翼基因组DNA序列,包含所述SEQ ID NO:2或其互补序列即可鉴定为转基因玉米事件DBN9888的存在。The SEQ ID NO: 1 or its complement is a 22 nucleotide sequence in the transgenic maize event DBN9888 located at the 5' end of the inserted sequence near the insertion junction, SEQ ID NO: 1 or The complementary sequence spans the flanking genomic DNA sequence of the maize insertion site and the DNA sequence at the 5' end of the inserted sequence, and the SEQ ID NO: 1 or its complement can be identified as the presence of the transgenic maize event DBN9888. The SEQ ID NO: 2 or its complement is a transgene Gene maize event DBN9888 is a 22-nucleotide sequence located near the insertion junction at the 3' end of the inserted sequence, the SEQ ID NO: 2 or its complement spanning the DNA of the 3' end of the inserted sequence The flanking genomic DNA sequence of the sequence and the maize insertion site, comprising the SEQ ID NO: 2 or its complement, can be identified as the presence of the transgenic maize event DBN9888.
本发明中,所述核酸序列可以为所述SEQ ID NO:3或其互补序列中转基因插入序列的任何部分的至少11个或更多个连续多核苷酸(第一核酸序列),或者为所述SEQ ID NO:3或其互补序列中5’侧翼玉米基因组DNA区域的任何部分的至少11个或更多个连续多核苷酸(第二核酸序列)。所述核酸序列进一步可以为同源于或互补于包含完整的所述SEQ ID NO:1的所述SEQ ID NO:3的一部分。当第一核酸序列和第二核酸序列一起使用时,这些核酸序列可作为DNA引物对用于产生扩增产物的DNA扩增方法中。使用DNA引物对在DNA扩增方法中产生的扩增产物是包括SEQ ID NO:1的扩增产物时,可以诊断转基因玉米事件DBN9888或其后代的存在。本领域技术人员熟知的,第一和第二核酸序列不必仅仅由DNA组成,也可包括RNA、DNA和RNA的混合物,或者DNA、RNA或其他不作为一种或多种聚合酶模板的核苷酸或其类似物的组合。此外,本发明中所述探针或引物应该是至少大约11、12、13、14、15、16、17、18、19、20、21或22个连续核苷酸的长度,其可以选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4和SEQ ID NO:5中所述的核苷酸。当选自SEQ ID NO:3、SEQ ID NO:4和SEQ ID NO:5所示的核苷酸时,所述探针和引物可以为长度是至少大约21个到大约50个或更多的连续核苷酸。所述SEQ ID NO:3或其互补序列为转基因玉米事件DBN9888中在插入序列的5’末端位于插入接合部位附近的一个长度为960个核苷酸的序列,所述SEQ ID NO:3或其互补序列由693个核苷酸的玉米侧翼基因组DNA序列(SEQ ID NO:3的核苷酸1-693)、77个核苷酸的DBN10006构建体DNA序列(SEQ ID NO:3的核苷酸694-770)和190个核苷酸的pr35S启动子序列5’末端DNA序列(SEQ ID NO:3的核苷酸771-960)组成,包含所述SEQ ID NO:3或其互补序列即可鉴定为转基因玉米事件DBN9888的存在。In the present invention, the nucleic acid sequence may be at least 11 or more contiguous polynucleotides (first nucleic acid sequence) of any part of the transgene insertion sequence of SEQ ID NO: 3 or its complement, or At least 11 or more contiguous polynucleotides (second nucleic acid sequence) of any portion of the 5' flanking maize genomic DNA region of SEQ ID NO: 3 or its complement. The nucleic acid sequence may further be homologous or complementary to a portion of the SEQ ID NO: 3 comprising the entire SEQ ID NO: 1. When the first nucleic acid sequence is used together with the second nucleic acid sequence, these nucleic acid sequences can be used as a DNA primer pair in a DNA amplification method for producing an amplification product. When the amplification product produced in the DNA amplification method using the DNA primer pair is an amplification product comprising SEQ ID NO: 1, the presence of the transgenic maize event DBN9888 or its progeny can be diagnosed. As is well known to those skilled in the art, the first and second nucleic acid sequences need not be composed solely of DNA, but may also comprise a mixture of RNA, DNA and RNA, or DNA, RNA or other nucleosides that are not templated as one or more polymerases. A combination of an acid or an analog thereof. Furthermore, the probe or primer of the present invention should be at least about 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or 22 contiguous nucleotides, which may be selected from Nucleotides as set forth in SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4 and SEQ ID NO: 5. When selected from the nucleotides set forth in SEQ ID NO: 3, SEQ ID NO: 4, and SEQ ID NO: 5, the probe and primer may be continuous from at least about 21 to about 50 or more in length. Nucleotide. The SEQ ID NO: 3 or its complement is a 960 nucleotide sequence in the transgenic maize event DBN9888 located at the 5' end of the inserted sequence near the insertion junction, SEQ ID NO: 3 or The complementary sequence consists of a 693 nucleotide maize flanking genomic DNA sequence (nucleotides 1-693 of SEQ ID NO: 3), a 77 nucleotide DBN10006 construct DNA sequence (nucleotide of SEQ ID NO: 3) 694-770) and a 190 nucleotide pr35S promoter sequence 5' end DNA sequence (nucleotides 771-960 of SEQ ID NO: 3), comprising the SEQ ID NO: 3 or its complementary sequence Identification of the presence of the transgenic maize event DBN9888.
所述核酸序列可以为所述SEQ ID NO:4或其互补序列中转基因插入序列的任何部分的至少11个或更多个连续多核苷酸(第三核酸序列),或者为所述 SEQ ID NO:4或其互补序列中3’侧翼玉米基因组DNA区域的任何部分的至少11个或更多个连续多核苷酸(第四核酸序列)。所述核酸序列进一步可以为同源于或互补于包含完整的所述SEQ ID NO:2的所述SEQ ID NO:4的一部分。当第三核酸序列和第四核酸序列一起使用时,这些核酸序列可作为DNA引物对用于产生扩增产物的DNA扩增方法中。使用DNA引物对在DNA扩增方法中产生的扩增产物是包括SEQ ID NO:2的扩增产物时,可以诊断转基因玉米事件DBN9888或其后代的存在。所述SEQ ID NO:4或其互补序列为转基因玉米事件DBN9888中在插入序列的3’末端位于插入接合部位附近的一个长度为753个核苷酸的序列,所述SEQ ID NO:4或其互补序列由159个核苷酸的tNos终止子序列(SEQ ID NO:4的核苷酸1-159)、113个核苷酸的DBN10006构建体DNA序列(SEQ ID NO:4的核苷酸160-272)和481个核苷酸的玉米整合位点侧翼基因组DNA序列(SEQ ID NO:4的273-753)组成,包含所述SEQ ID NO:4或其互补序列即可鉴定为转基因玉米事件DBN9888的存在。The nucleic acid sequence may be at least 11 or more contiguous polynucleotides (third nucleic acid sequence) of any portion of the transgene insertion sequence of SEQ ID NO: 4 or its complement, or At least 11 or more contiguous polynucleotides (fourth nucleic acid sequence) of any portion of the 3' flanking maize genomic DNA region of SEQ ID NO: 4 or its complement. The nucleic acid sequence may further be homologous or complementary to a portion of the SEQ ID NO: 4 comprising the entire SEQ ID NO: 2. When the third nucleic acid sequence is used together with the fourth nucleic acid sequence, these nucleic acid sequences can be used as a DNA primer pair in a DNA amplification method for producing an amplification product. When the amplification product produced in the DNA amplification method using the DNA primer pair is an amplification product comprising SEQ ID NO: 2, the presence of the transgenic maize event DBN9888 or its progeny can be diagnosed. The SEQ ID NO: 4 or its complement is a 753 nucleotide sequence in the transgenic maize event DBN9888 located at the 3' end of the inserted sequence near the insertion junction, SEQ ID NO: 4 or The complementary sequence consists of a 159 nucleotide tNos terminator sequence (nucleotides 1-159 of SEQ ID NO: 4), a 113 nucleotide DBN10006 construct DNA sequence (nucleotide 160 of SEQ ID NO: 4) -272) consisting of a 481 nucleotide maize integration site flanking genomic DNA sequence (273-753 of SEQ ID NO: 4) comprising the SEQ ID NO: 4 or its complement which can be identified as a transgenic maize event The existence of DBN9888.
所述SEQ ID NO:5或其互补序列为表征转基因玉米事件DBN9888的长度为5952个核苷酸的序列,其具体包含的基因组和遗传元件如表1所示。包含所述SEQ ID NO:5或其互补序列即可鉴定为转基因玉米事件DBN9888的存在。The SEQ ID NO: 5 or its complement is a sequence of 5952 nucleotides in length that characterizes the transgenic maize event DBN9888, and the genomic and genetic elements specifically included are shown in Table 1. The presence of the SEQ ID NO: 5 or its complement can be identified as the presence of the transgenic maize event DBN9888.
表1、SEQ ID NO:5包含的基因组及遗传元件Table 1, genomic and genetic elements contained in SEQ ID NO: 5
Figure PCTCN2016080677-appb-000001
Figure PCTCN2016080677-appb-000001
Figure PCTCN2016080677-appb-000002
Figure PCTCN2016080677-appb-000002
所述核酸序列或其互补序列可用于DNA扩增法中以产生扩增子,所述扩增子的检测诊断生物样品中转基因玉米事件DBN9888或其后代的存在;所述核酸序列或其互补序列可用于核苷酸检测法中,以检测生物样品中转基因玉米事件DBN9888或其后代的存在。The nucleic acid sequence or its complement may be used in a DNA amplification method to generate an amplicon that detects the presence of a transgenic maize event DBN9888 or a progeny thereof in a biological sample; the nucleic acid sequence or its complement It can be used in nucleotide assays to detect the presence of the transgenic maize event DBN9888 or its progeny in a biological sample.
为实现上述目的,本发明还提供了一种检测样品中转基因玉米事件DBN9888的DNA存在的方法,包括:To achieve the above object, the present invention also provides a method for detecting the presence of DNA in a transgenic maize event DBN9888 in a sample, comprising:
使待检测样品与至少两种引物在核酸扩增反应中接触;Contacting the sample to be detected with at least two primers in a nucleic acid amplification reaction;
进行核酸扩增反应;Performing a nucleic acid amplification reaction;
检测扩增产物的存在;Detecting the presence of amplification products;
所述扩增产物包括SEQ ID NO:3或其互补序列中至少11个连续的核苷酸、或者SEQ ID NO:4或其互补序列中至少11个连续的核苷酸。The amplification product comprises at least 11 contiguous nucleotides of SEQ ID NO: 3 or its complement, or at least 11 contiguous nucleotides of SEQ ID NO: 4 or its complement.
进一步地,所述扩增产物包括SEQ ID NO:1或其互补序列中第1-11位或第12-22位连续核苷酸、或者SEQ ID NO:2或其互补序列中第1-11位或第12-22位连续核苷酸。Further, the amplification product comprises contiguous nucleotides 1 to 11 or 12 to 22 in SEQ ID NO: 1 or its complement, or 1 to 11 in SEQ ID NO: 2 or its complement Bit or contiguous nucleotides from positions 12-22.
更进一步地,所述扩增产物包括SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、或者SEQ ID NO:7或其互补序列。Further, the amplification product comprises SEQ ID NO: 1 or its complement, SEQ ID NO: 2 or its complement, SEQ ID NO: 6 or its complement, or SEQ ID NO: 7 or its complement .
在上述技术方案中,所述引物包括至少一种所述核酸序列。In the above technical solution, the primer comprises at least one of the nucleic acid sequences.
具体地,所述引物包括第一引物和第二引物,所述第一引物选自SEQ ID NO:8和SEQ ID NO:10;所述第二引物选自SEQ ID NO:9和SEQ ID NO:11。Specifically, the primer comprises a first primer selected from the group consisting of SEQ ID NO: 8 and SEQ ID NO: 10; and a second primer selected from the group consisting of SEQ ID NO: 9 and SEQ ID NO: :11.
为实现上述目的,本发明还提供了一种检测样品中转基因玉米事件DBN9888的DNA存在的方法,包括:To achieve the above object, the present invention also provides a method for detecting the presence of DNA in a transgenic maize event DBN9888 in a sample, comprising:
使待检测样品与探针接触,所述探针包括SEQ ID NO:3或其互补序列中至少11个连续的核苷酸、或者SEQ ID NO:4或其互补序列中至少11个连续的核苷酸;The sample to be detected is contacted with a probe comprising at least 11 contiguous nucleotides of SEQ ID NO: 3 or its complement, or at least 11 contiguous nucleuses of SEQ ID NO: 4 or its complement Glucoside
使所述待检测样品和所述探针在严格杂交条件下杂交;The sample to be detected and the probe are hybridized under stringent hybridization conditions;
检测所述待检测样品和所述探针的杂交情况。The hybridization of the sample to be detected and the probe is detected.
所述严格条件可为在6×SSC(柠檬酸钠)、0.5%SDS(十二烷基硫酸钠) 溶液中,在65℃下杂交,然后用2×SSC、0.1%SDS和1×SSC、0.1%SDS各洗膜1次。The stringent conditions can be 6 x SSC (sodium citrate), 0.5% SDS (sodium lauryl sulfate) In the solution, hybridization was carried out at 65 ° C, and then the membrane was washed once with 2 x SSC, 0.1% SDS and 1 x SSC, 0.1% SDS.
进一步地,所述探针包括SEQ ID NO:1或其互补序列中第1-11位或第12-22位连续核苷酸、或者SEQ ID NO:2或其互补序列中第1-11位或第12-22位连续核苷酸。Further, the probe comprises contiguous nucleotides 1 to 11 or 12 to 22 in SEQ ID NO: 1 or its complement, or 1 to 11 in SEQ ID NO: 2 or its complement Or consecutive nucleotides 12-22.
更进一步地,所述探针具有SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、或者SEQ ID NO:7或其互补序列。Further, the probe has SEQ ID NO: 1 or its complement, SEQ ID NO: 2 or its complement, SEQ ID NO: 6 or its complement, or SEQ ID NO: 7 or its complement.
可选择地,至少一个所述探针用至少一种荧光基团标记。Optionally, at least one of the probes is labeled with at least one fluorophore.
为实现上述目的,本发明还提供了一种检测样品中转基因玉米事件DBN9888的DNA存在的方法,包括:To achieve the above object, the present invention also provides a method for detecting the presence of DNA in a transgenic maize event DBN9888 in a sample, comprising:
使待检测样品与标记物核酸分子接触,所述标记物核酸分子包括SEQ ID NO:3或其互补序列中至少11个连续的核苷酸、或者SEQ ID NO:4或其互补序列中至少11个连续的核苷酸;The sample to be detected is contacted with a marker nucleic acid molecule comprising at least 11 contiguous nucleotides of SEQ ID NO: 3 or its complement, or at least 11 of SEQ ID NO: 4 or its complement Contiguous nucleotides;
使所述待检测样品和所述标记物核酸分子在严格杂交条件下杂交;The sample to be detected and the marker nucleic acid molecule are hybridized under stringent hybridization conditions;
检测所述待检测样品和所述标记物核酸分子的杂交情况,进而通过标记物辅助育种分析以确定草甘膦耐受性和/或草铵膦耐受性与标记物核酸分子在遗传学上是连锁的。Detecting the hybridization of the sample to be detected and the marker nucleic acid molecule, and further assisting in breeding analysis by marker-assisted breeding to determine glyphosate tolerance and/or glufosinate tolerance with the marker nucleic acid molecule genetically It is chained.
进一步地,所述标记物核酸分子包括SEQ ID NO:1或其互补序列中第1-11位或第12-22位连续核苷酸、或者SEQ ID NO:2或其互补序列中第1-11位或第12-22位连续核苷酸。Further, the marker nucleic acid molecule comprises SEQ ID NO: 1 or its complementary sequence at positions 1-11 or 12-22 contiguous nucleotide, or SEQ ID NO: 2 or its complement 1 - 11th or 12th to 22nd consecutive nucleotides.
更进一步地,所述标记物核酸分子具有SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、或者SEQ ID NO:7或其互补序列。Further, the marker nucleic acid molecule has SEQ ID NO: 1 or its complement, SEQ ID NO: 2 or its complement, SEQ ID NO: 6 or its complement, or SEQ ID NO: 7 or its complement sequence.
为实现上述目的,本发明还提供了一种DNA检测试剂盒,包括至少一个DNA分子,所述DNA分子包括SEQ ID NO:3的同源序列或其互补序列中至少11个连续的核苷酸、或者SEQ ID NO:4的同源序列或其互补序列中至少11个连续的核苷酸,其可以作为对于转基因玉米事件DBN9888或其后代具有特异性的DNA引物或探针。To achieve the above object, the present invention also provides a DNA detection kit comprising at least one DNA molecule comprising at least 11 contiguous nucleotides of the homologous sequence of SEQ ID NO: 3 or a complement thereof Or at least 11 contiguous nucleotides of the homologous sequence of SEQ ID NO: 4 or its complement, which can serve as a DNA primer or probe specific for the transgenic maize event DBN9888 or a progeny thereof.
进一步地,所述DNA分子包括SEQ ID NO:1或其互补序列中第1-11位 或第12-22位连续核苷酸、或者SEQ ID NO:2或其互补序列中第1-11位或第12-22位连续核苷酸。Further, the DNA molecule comprises SEQ ID NO: 1 or the 1st to 11th of its complement Or a contiguous nucleotide at positions 12-22, or a contiguous nucleotide at positions 1-11 or 12-22 in SEQ ID NO: 2 or its complement.
更进一步地,所述DNA分子具有SEQ ID NO:1的同源序列或其互补序列、SEQ ID NO:2的同源序列或其互补序列、SEQ ID NO:6的同源序列或其互补序列、或者SEQ ID NO:7的同源序列或其互补序列。Further, the DNA molecule has the homologous sequence of SEQ ID NO: 1 or its complement, the homologous sequence of SEQ ID NO: 2 or its complement, the homologous sequence of SEQ ID NO: 6, or its complement Or the homologous sequence of SEQ ID NO: 7 or its complement.
为实现上述目的,本发明还提供了一种植物细胞,包含编码草甘膦耐受性EPSPS蛋白的核酸序列、编码草铵膦耐受性PAT蛋白的核酸序列和特定区域的核酸序列,所述特定区域的核酸序列包括SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:6或SEQ ID NO:7所示的序列。To achieve the above object, the present invention also provides a plant cell comprising a nucleic acid sequence encoding a glyphosate-tolerant EPSPS protein, a nucleic acid sequence encoding a glufosinate-resistant PAT protein, and a nucleic acid sequence of a specific region, The nucleic acid sequence of a particular region includes the sequence set forth in SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 6, or SEQ ID NO: 7.
为实现上述目的,本发明还提供了一种产生对草甘膦除草剂具有耐受性的玉米植株的方法,包括向所述玉米植株的基因组中引入编码草甘膦耐受性EPSPS蛋白的核酸序列和特定区域的核酸序列,所述特定区域的核酸序列选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。In order to achieve the above object, the present invention also provides a method for producing a maize plant which is tolerant to a glyphosate herbicide, comprising introducing a nucleic acid encoding a glyphosate-tolerant EPSPS protein into the genome of the corn plant. a sequence and a nucleic acid sequence of a specific region, wherein the nucleic acid sequence of the specific region is selected from the group consisting of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO : 6 and at least one nucleic acid sequence of the sequence of SEQ ID NO: 7.
具体地,所述产生对草甘膦除草剂具有耐受性的玉米植株的方法包括:Specifically, the method of producing a corn plant that is tolerant to a glyphosate herbicide comprises:
将对草甘膦除草剂具有耐受性的转基因玉米事件DBN9888第一亲本玉米植株与缺少草甘膦耐受性的第二亲本玉米植株有性杂交,从而产生大量子代植株;The first parental maize plant of the transgenic maize event DBN9888 resistant to glyphosate herbicide is sexually crossed with the second parental maize plant lacking glyphosate tolerance, thereby producing a large number of progeny plants;
用草甘膦除草剂处理所述子代植株;Treating the progeny plants with a glyphosate herbicide;
选择耐受草甘膦的所述子代植株。The progeny plants that are tolerant to glyphosate are selected.
为实现上述目的,本发明还提供了一种产生对草铵膦除草剂具有耐受性的玉米植株的方法,包括向所述玉米植株的基因组中引入编码草铵膦耐受性PAT蛋白的核酸序列和特定区域的核酸序列,所述特定区域的核酸序列选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。In order to achieve the above object, the present invention also provides a method for producing a maize plant which is tolerant to a glufosinate herbicide, comprising introducing a nucleic acid encoding a glufosinate-tolerant PAT protein into the genome of the corn plant. a sequence and a nucleic acid sequence of a specific region, wherein the nucleic acid sequence of the specific region is selected from the group consisting of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO : 6 and at least one nucleic acid sequence of the sequence of SEQ ID NO: 7.
具体地,所述产生对草铵膦除草剂具有耐受性的玉米植株的方法包括:Specifically, the method of producing a corn plant that is tolerant to glufosinate herbicides comprises:
将对草铵膦除草剂具有耐受性的转基因玉米事件DBN9888第一亲本玉米植株与缺少草铵膦耐受性的第二亲本玉米植株有性杂交,从而产生大量子代植株; The first parental maize plant of the transgenic maize event DBN9888 resistant to glufosinate herbicide was sexually crossed with the second parental maize plant lacking glufosinate tolerance, thereby producing a large number of progeny plants;
用草铵膦除草剂处理所述子代植株;Treating the progeny plants with a glufosinate herbicide;
选择耐受草甘膦的所述子代植株。The progeny plants that are tolerant to glyphosate are selected.
为实现上述目的,本发明还提供了一种产生对草甘膦除草剂和草铵膦除草剂具有耐受性的玉米植株的方法,包括向所述玉米植株的基因组中引入编码草甘膦耐受性EPSPS蛋白的核酸序列、编码草铵膦耐受性PAT蛋白的核酸序列和特定区域的核酸序列,所述特定区域的核酸序列选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。In order to achieve the above object, the present invention also provides a method for producing a maize plant which is tolerant to a glyphosate herbicide and a glufosinate herbicide, comprising introducing a glyphosate-resistant gene into the genome of the corn plant. a nucleic acid sequence encoding a glufosinate-resistant PAT protein, a nucleic acid sequence encoding a glufosinate-resistant PAT protein, and a nucleic acid sequence of a specific region selected from the group consisting of SEQ ID NO: 1, SEQ ID NO: 2, and SEQ ID NO: 3, at least one of the sequences of SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 6 and SEQ ID NO: 7.
具体地,所述产生对草甘膦除草剂和草铵膦除草剂具有耐受性的玉米植株的方法包括:Specifically, the method of producing a corn plant that is tolerant to a glyphosate herbicide and a glufosinate herbicide comprises:
将对草甘膦除草剂和草铵膦除草剂具有耐受性的转基因玉米事件DBN9888第一亲本玉米植株与缺少草甘膦和/或草铵膦耐受性的第二亲本玉米植株有性杂交,从而产生大量子代植株;Transgenic maize event DBN9888 first parent maize plant tolerant to glyphosate herbicide and glufosinate herbicide was sexually crossed with a second parental maize plant lacking glyphosate and/or glufosinate tolerance , thereby producing a large number of progeny plants;
用草甘膦除草剂和草铵膦除草剂处理所述子代植株;Treating the progeny plants with a glyphosate herbicide and a glufosinate herbicide;
选择耐受草甘膦和草铵膦的所述子代植株。The progeny plants that are tolerant to glyphosate and glufosinate are selected.
为实现上述目的,本发明还提供了一种培养对草甘膦除草剂具有耐受性的玉米植物的方法,包括:To achieve the above object, the present invention also provides a method of cultivating a corn plant which is tolerant to a glyphosate herbicide, comprising:
种植至少一粒玉米种子,所述玉米种子的基因组中包括编码草甘膦耐受性EPSPS的核酸序列和特定区域的核酸序列;Planting at least one corn seed comprising a nucleic acid sequence encoding a glyphosate-tolerant EPSPS and a nucleic acid sequence of a specific region in the genome of the corn seed;
使所述玉米种子长成玉米植株;Growing the corn seed into a corn plant;
用有效剂量草甘膦除草剂喷洒所述玉米植株,收获与其他不具有特定区域的核酸序列的植株相比具有减弱的植物损伤的植株;Spraying the corn plant with an effective amount of a glyphosate herbicide to harvest plants having reduced plant damage compared to other plants having no nucleic acid sequence of a particular region;
所述特定区域的核酸序列选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。The nucleic acid sequence of the specific region is selected from the group consisting of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 6, and SEQ ID NO: 7. At least one nucleic acid sequence in the sequence shown.
为实现上述目的,本发明还提供了一种培养对草铵膦除草剂具有耐受性的玉米植物的方法,包括:To achieve the above object, the present invention also provides a method of cultivating a corn plant which is tolerant to glufosinate herbicide, comprising:
种植至少一粒玉米种子,所述玉米种子的基因组中包括编码草铵膦耐受性PAT蛋白的核酸序列和特定区域的核酸序列; Planting at least one corn seed, the genome of the corn seed comprising a nucleic acid sequence encoding a glufosinate-tolerant PAT protein and a nucleic acid sequence of a specific region;
使所述玉米种子长成玉米植株;Growing the corn seed into a corn plant;
用有效剂量草铵膦除草剂喷洒所述玉米植株,收获与其他不具有特定区域的核酸序列的植株相比具有减弱的植物损伤的植株;Spraying the corn plant with an effective amount of glufosinate herbicide to harvest plants having reduced plant damage compared to other plants having no nucleic acid sequence of a particular region;
所述特定区域的核酸序列选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。The nucleic acid sequence of the specific region is selected from the group consisting of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 6, and SEQ ID NO: 7. At least one nucleic acid sequence in the sequence shown.
为实现上述目的,本发明还提供了一种培养对草甘膦除草剂和草铵膦除草剂具有耐受性的玉米植物的方法,包括:To achieve the above object, the present invention also provides a method of cultivating a corn plant which is tolerant to a glyphosate herbicide and a glufosinate herbicide, comprising:
种植至少一粒玉米种子,所述玉米种子的基因组中包括编码草甘膦耐受性EPSPS蛋白的核酸序列、编码草铵膦耐受性PAT蛋白的核酸序列和特定区域的核酸序列;Planting at least one corn seed, the genome of the corn seed comprising a nucleic acid sequence encoding a glyphosate-tolerant EPSPS protein, a nucleic acid sequence encoding a glufosinate-tolerant PAT protein, and a nucleic acid sequence of a specific region;
使所述玉米种子长成玉米植株;Growing the corn seed into a corn plant;
用有效剂量草甘膦除草剂和草铵膦除草剂喷洒所述玉米植株,收获与其他不具有特定区域的核酸序列的植株相比具有减弱的植物损伤的植株;Spraying the corn plant with an effective amount of a glyphosate herbicide and a glufosinate herbicide to harvest plants having reduced plant damage compared to other plants having no nucleic acid sequence of a particular region;
所述特定区域的核酸序列选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。The nucleic acid sequence of the specific region is selected from the group consisting of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 6, and SEQ ID NO: 7. At least one nucleic acid sequence in the sequence shown.
为实现上述目的,本发明还提供了一种保护植物免受由除草剂引起的损伤的方法,包括将含有有效剂量草甘膦和/或草铵膦的除草剂施加到种植至少一种转基因玉米植物的大田中,所述转基因玉米植物在其基因组中包含选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列,所述转基因玉米植物具有对草甘膦除草剂和/或草铵膦除草剂的耐受性。To achieve the above object, the present invention also provides a method of protecting a plant from damage caused by a herbicide, comprising applying a herbicide containing an effective amount of glyphosate and/or glufosinate to at least one transgenic corn. In the field of the plant, the transgenic maize plant comprises in its genome a cell selected from the group consisting of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO : 6 and at least one nucleic acid sequence of the sequence of SEQ ID NO: 7, the transgenic maize plant having tolerance to a glyphosate herbicide and/or a glufosinate herbicide.
为实现上述目的,本发明还提供了一种控制田间杂草的方法,包括将含有有效剂量草甘膦和/或草铵膦的除草剂施加到种植至少一种转基因玉米植物的大田中,所述转基因玉米植物在其基因组中包含选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列,所述转基因玉米植物具有对草甘膦除草剂和/或草铵膦除草剂的耐受性。 To achieve the above object, the present invention also provides a method of controlling field weeds comprising applying a herbicide containing an effective amount of glyphosate and/or glufosinate to a field in which at least one transgenic corn plant is planted. The transgenic maize plant comprises in its genome a cell selected from the group consisting of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 6, and SEQ ID NO : at least one nucleic acid sequence in the sequence of 7 which has tolerance to glyphosate herbicides and/or glufosinate herbicides.
为实现上述目的,本发明还提供了一种控制草甘膦耐受性植物的大田中草甘膦抗性杂草的方法,包括将含有有效剂量草铵膦的除草剂施加到种植至少一种草甘膦耐受性的转基因玉米植物的大田中,所述草甘膦耐受性的转基因玉米植物在其基因组中包含选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列,所述草甘膦耐受性的转基因玉米植物同时具有对草铵膦除草剂的耐受性。In order to achieve the above object, the present invention also provides a method for controlling glyphosate-resistant weeds in a field of glyphosate-tolerant plants, comprising applying a herbicide containing an effective dose of glufosinate to at least one planting In the field of glyphosate-tolerant transgenic maize plants, the glyphosate-tolerant transgenic maize plant comprises in its genome a SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3 At least one of the sequences of SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 6 and SEQ ID NO: 7, the glyphosate-tolerant transgenic maize plant having both grasses Tolerance of ammonium phosphine herbicides.
为实现上述目的,本发明还提供了一种延缓昆虫抗性的方法,包括在种植抗虫玉米植物的大田中种植至少一种具有草甘膦和/或草铵膦耐受性的转基因玉米植物,所述草甘膦耐受性的转基因玉米植物在其基因组中包含选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。In order to achieve the above object, the present invention also provides a method for delaying insect resistance, comprising planting at least one transgenic corn plant having glyphosate and/or glufosinate tolerance in a field planted with a pest-resistant corn plant. The glyphosate-tolerant transgenic maize plant comprises in its genome a cell selected from the group consisting of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: At least one nucleic acid sequence of the sequences set forth in SEQ ID NO: 6 and SEQ ID NO: 7.
为实现上述目的,本发明还提供了一种包含SEQ ID NO:1或SEQ ID NO:2的多核苷酸的农产品或商品,所述农产品或商品为玉米粉、玉米面、玉米油、玉米淀粉、玉米面筋、玉米饼、化妆品或填充剂。To achieve the above object, the present invention also provides an agricultural product or commodity comprising the polynucleotide of SEQ ID NO: 1 or SEQ ID NO: 2, which is corn flour, corn flour, corn oil, corn starch, Corn gluten, tortillas, cosmetics or fillers.
在本发明用于检测抗除草剂玉米植物的核酸序列及其检测方法中,以下定义和方法可以更好地定义本发明和指导本领域的普通技术人员实施本发明,除非另作说明,根据本领域普通技术人员的常规的用法来理解术语。In the nucleic acid sequences of the present invention for detecting herbicide-tolerant corn plants and methods for detecting the same, the following definitions and methods can better define the present invention and guide those skilled in the art to carry out the invention, unless otherwise stated, The terminology is used in the ordinary usage of one of ordinary skill in the art.
所述“玉米”是指玉蜀黍(Zea mays),并且包括可以与玉米交配的所有植物品种,包括野生玉米种。The term "corn" refers to Zea mays and includes all plant species that can be mated with corn, including wild corn species.
术语“包含”、“包括”是指“包括但不限于”。The terms "including" and "including" mean "including but not limited to".
术语“植物”包括整株植物、植物细胞、植物器官、植物原生质体、植物可以从中再生的植物细胞组织培养物、植物愈伤组织、植物丛(plant clumps)和植物或植物部分中完整的植物细胞,所述植物部分例如胚、花粉、胚珠、种子、叶、花、枝、果实、茎秆、根、根尖、花药等。应理解为本发明范围内的转基因植物的部分包括但不限于植物细胞、原生质体、组织、愈伤组织、胚以及花、茎、果实、叶和根,以上植物部分源自事先用本发明的DNA分子转化的并因此至少部分地由转基因细胞组成的转基因植物或其子代。The term "plant" includes whole plants, plant cells, plant organs, plant protoplasts, plant cell tissue cultures from which plants can be regenerated, plant callus, plant clumps, and intact plants in plants or plant parts. Cells, such as embryos, pollen, ovules, seeds, leaves, flowers, branches, fruits, stems, roots, root tips, anthers, and the like. It is to be understood that parts of the transgenic plants within the scope of the invention include, but are not limited to, plant cells, protoplasts, tissues, callus, embryos, and flowers, stems, fruits, leaves and roots, the above plant parts being derived from the prior invention using the invention. A transgenic plant or a progeny thereof transformed with a DNA molecule and thus at least partially composed of transgenic cells.
术语“基因”是指表达特定蛋白的核酸片段,包括编码序列前的调节序列 (5’非编码序列)和编码序列后的调节序列(3’非编码序列)。“天然基因”是指天然发现具有其自身调节序列的基因。“嵌合基因”是指不是天然基因的任何基因,其包含非天然发现的调节和编码序列。“内源基因”是指天然基因,所述天然基因位于生物体基因组中它的天然位置。“外源基因”是现存在于生物的基因组中且原来不存在的外来基因,也指经转基因步骤导入受体细胞的基因。外源基因可以包含插入非天然生物体的天然基因或嵌合基因。“转基因”是通过转化程序已经被引入基因组的基因。植物基因组中重组DNA已被插入的位点可以称为“插入位点”或“靶位点”。The term "gene" refers to a nucleic acid fragment that expresses a particular protein, including regulatory sequences preceding the coding sequence. (5' non-coding sequence) and regulatory sequence following the coding sequence (3' non-coding sequence). "Native gene" refers to a gene that is naturally found to have its own regulatory sequences. "Chimeric gene" refers to any gene that is not a native gene that contains regulatory and coding sequences that are not found in nature. "Endogenous gene" refers to a native gene that is located in its natural location in the genome of an organism. A "foreign gene" is a foreign gene that is present in the genome of an organism and does not originally exist, and also refers to a gene that is introduced into a recipient cell by a transgenic step. The foreign gene may comprise a native gene or a chimeric gene inserted into the non-native organism. A "transgene" is a gene that has been introduced into the genome by a transformation program. The site in which the recombinant DNA has been inserted in the plant genome may be referred to as an "insertion site" or a "target site."
“侧翼DNA”可以包含天然存在于例如植物的生物体中的基因组或通过转化过程引入的外源(异源)DNA,例如与转化事件相关的片段。因此,侧翼DNA可以包括天然和外源DNA的组合。在本发明中,“侧翼区”或“侧翼序列”或“基因组边界区”或“基因组边界序列”是指至少3、5、10、11、15、20、50、100、200、300、400、1000、1500、2000、2500或5000碱基对或更长的序列,其位于最初外源插入DNA分子的直接上游或下游并且与最初外源插入DNA分子相邻。当该侧翼区位于下游时,其也可以称为“左边界侧翼”或“3’侧翼”或“3’基因组边界区”或“基因组3’边界序列”等。当该侧翼区位于上游时,其也可以称为“右边界侧翼”或“5’侧翼”或“5’基因组边界区”或“基因组5’边界序列”等。"Flanking DNA" may comprise a genome naturally present in an organism such as a plant or an exogenous (heterologous) DNA introduced by a transformation process, such as a fragment associated with a transformation event. Thus, flanking DNA can include a combination of natural and exogenous DNA. In the present invention, "flanking region" or "flanking sequence" or "genome boundary region" or "genome boundary sequence" means at least 3, 5, 10, 11, 15, 20, 50, 100, 200, 300, 400 A sequence of 1000, 1500, 2000, 2500 or 5000 base pairs or longer located directly upstream or downstream of the original exogenous insert DNA molecule and adjacent to the original exogenously inserted DNA molecule. When the flanking region is located downstream, it may also be referred to as "left border flanking" or "3' flanking" or "3' genomic border region" or "genome 3' border sequence" and the like. When the flanking region is located upstream, it may also be referred to as "right border flanking" or "5' flanking" or "5' genomic border region" or "genome 5' border sequence" and the like.
引起外源DNA的随机整合的转化程序会导致含有不同侧翼区的转化体,所述不同侧翼区是每个转化体所特异性含有的。当重组DNA通过传统杂交被引入植物时,其侧翼区通常不会改变。转化体也会含有异源插入物DNA和基因组DNA的段之间或两段基因组DNA之间或两段异源DNA之间的独特的接合。“接合”是两个具体的DNA片段连接的点。例如,接合存在于插入物DNA连接侧翼DNA的位置。接合点还存在于转化的生物体中,其中两个DNA片段以修饰自天然生物体中发现的方式的连接在一起。“接合DNA”、“接合区域”是指包含接合点的DNA。A transformation program that causes random integration of foreign DNA results in transformants containing different flanking regions that are specifically contained by each transformant. When recombinant DNA is introduced into a plant by conventional hybridization, its flanking regions generally do not change. Transformants also contain unique junctions between heterologous insert DNA and segments of genomic DNA or between two segments of genomic DNA or between two heterologous DNAs. "Joining" is the point at which two specific DNA fragments are joined. For example, the junction is present at a position where the insert DNA joins the flanking DNA. The junction is also present in the transformed organism, where the two DNA fragments are joined together in a manner modified from that found in the native organism. "Joining DNA" and "joining region" refer to DNA containing a junction.
本发明提供了称为DBN9888的转基因玉米事件及其后代,所述转基因玉米事件DBN9888即为玉米植物DBN9888,其包括转基因玉米事件DBN9888的植物和种子及其植物细胞或其可再生部分,所述转基因玉米事件DBN9888 的植物部分,包括但不限于细胞、花粉、胚珠、花、芽、根、茎、穗丝、花序、耳穗、叶和来自玉米植物DBN9888的产物,例如玉米粉、玉米面、玉米油、玉米浆、玉米穗丝、玉米淀粉和留在玉米作物田间的生物量。The present invention provides a transgenic maize event called DBN9888 and its progeny, which is a maize plant DBN9888 comprising plants and seeds of the transgenic maize event DBN9888 and plant cells thereof or a regenerable portion thereof, said transgene Corn Event DBN9888 Plant parts, including but not limited to cells, pollen, ovules, flowers, buds, roots, stems, silks, inflorescences, ear tips, leaves and products from corn plant DBN9888, such as corn flour, cornmeal, corn oil, corn syrup , corn silk, corn starch and biomass left in the corn crop field.
本发明转基因玉米事件DBN9888包含了一个DNA构建体,当其在植物细胞内表达时,所述转基因玉米事件DBN9888获得对草甘膦除草剂和草铵膦除草剂的耐受性。所述DNA构建体包含两个串联的表达盒,第一个表达盒包含用于在植物中表达的适合的启动子和适合的多聚腺苷酸化信号序列,所述启动子可操作地连接编码5-烯醇丙酮酰莽草酸-3-磷酸合酶(EPSPS)的基因,所述EPSPS对草甘膦除草剂具有耐受性。第二个表达盒包含用于在植物中表达的适合的启动子和适合的多聚腺苷酸化信号序列,所述启动子可操作地连接编码膦丝菌素N-乙酰基转移酶(PAT)的基因,所述PAT蛋白的核酸序列对草铵膦除草剂具有耐受性。进一步地,所述启动子可以为从植物分离的适合启动子,包括组成型、诱导型和/或组织特异性启动子,所述适合启动子包括但不限于,花椰菜花叶病毒(CaMV)35S启动子、玄参花叶病毒(FMV)35S启动子、Tsf1启动子、泛素蛋白(Ubiquitin)启动子、肌动蛋白(Actin)启动子、土壤农杆菌(Agrobacterium tumefaciens)胭脂碱合成酶(NOS)启动子、章鱼碱合成酶(OCS)启动子、夜香树属(Cestrum)黄叶卷曲病毒启动子、马铃薯块茎储藏蛋白(Patatin)启动子、核酮糖-1,5-二磷酸羧化酶/加氧酶(RuBisCO)启动子、谷胱甘肽硫转移酶(GST)启动子、E9启动子、GOS启动子、alcA/alcR启动子、毛根农杆菌(Agrobacterium rhizogenes)RolD启动子和拟南芥属(Arabidopsis)Suc2启动子。所述多聚腺苷酸化信号序列可以为在植物中起作用的适合多聚腺苷酸化信号序列,所述适合多聚腺苷酸化信号序列包括但不限于,来源于土壤农杆菌(Agrobacterium tumefaciens)胭脂碱合成酶(NOS)基因的多聚腺苷酸化信号序列、来源于花椰菜花叶病毒(CaMV)35S终止子、来源于豌豆核酮糖-1,5-二磷酸羧化酶/加氧酶E9终止子、来源于蛋白酶抑制剂II(PIN II)基因的多聚腺苷酸化信号序列和来源于α-微管蛋白(α-tubulin)基因的多聚腺苷酸化信号序列。The transgenic maize event DBN9888 of the present invention comprises a DNA construct which, when expressed in plant cells, is rendered tolerant to glyphosate herbicides and glufosinate herbicides. The DNA construct comprises two tandem expression cassettes, the first expression cassette comprising a suitable promoter for expression in a plant and a suitable polyadenylation signal sequence, the promoter being operably linked to the coding A gene for 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) which is tolerant to glyphosate herbicides. A second expression cassette comprises a suitable promoter for expression in a plant and a suitable polyadenylation signal sequence operably linked to a phosphinothricin N-acetyltransferase (PAT) The gene, the nucleic acid sequence of the PAT protein is tolerant to glufosinate herbicides. Further, the promoter may be a suitable promoter isolated from a plant, including constitutive, inducible and/or tissue-specific promoters including, but not limited to, cauliflower mosaic virus (CaMV) 35S Promoter, Scrophularia mosaic virus (FMV) 35S promoter, Tsf1 promoter, Ubiquitin promoter, actin promoter, Agrobacterium tumefaciens nopaline synthase (NOS) Promoter, octopine synthase (OCS) promoter, Cestrum yellow leaf curling virus promoter, potato tuber storage protein (Patatin) promoter, ribulose-1,5-bisphosphate carboxylase /Oxygenase (RuBisCO) promoter, glutathione S-transferase (GST) promoter, E9 promoter, GOS promoter, alcA/alcR promoter, Agrobacterium rhizogenes RolD promoter and pseudo-South Arabidopsis Suc2 promoter. The polyadenylation signal sequence may be a suitable polyadenylation signal sequence that functions in plants, including, but not limited to, from Agrobacterium tumefaciens. Polyadenylation signal sequence of nopaline synthase (NOS) gene, derived from cauliflower mosaic virus (CaMV) 35S terminator, derived from pea ribulose-1,5-bisphosphate carboxylase/oxygenase The E9 terminator, a polyadenylation signal sequence derived from the protease inhibitor II (PIN II) gene, and a polyadenylation signal sequence derived from the α-tubulin gene.
此外,所述表达盒还可以包括其他的遗传元件,所述遗传元件包括但不限于,增强子和信号肽/转运肽。所述增强子可以增强基因的表达水平,所述增 强子包括但不限于,烟草蚀刻病毒(TEV)翻译激活因子、CaMV35S增强子和FMV35S增强子。所述信号肽/转运肽可以引导EPSPS蛋白和/或PAT蛋白转运到细胞外或者细胞内特定的细胞器或区室,例如,利用编码叶绿体转运肽序列靶向叶绿体,或者利用‘KDEL’保留序列靶向内质网。Furthermore, the expression cassette may also include other genetic elements including, but not limited to, enhancers and signal peptides/transport peptides. The enhancer can enhance the expression level of the gene, and the increase Hadron includes, but is not limited to, Tobacco Etch Virus (TEV) Translational Activating Factor, CaMV35S Enhancer, and FMV35S Enhancer. The signal peptide/transport peptide can direct the transport of EPSPS proteins and/or PAT proteins to extracellular or specific organelles or compartments within the cell, for example, by targeting chloroplasts encoding chloroplast transit peptide sequences, or by using 'KDEL' retention sequence targets To the endoplasmic network.
所述5-烯醇丙酮酰莽草酸-3-磷酸合酶(EPSPS)基因可以是从土壤农杆菌(Agrobacterium tumefaciens sp.)CP4菌株中分离得到的,且可以通过优化密码子或者以其他方式改变编码EPSPS的多核苷酸,以达到增加转化细胞中转录物的稳定性和可利用性的目的。所述5-烯醇丙酮酰莽草酸-3-磷酸合酶(EPSPS)基因也可以作为选择性标记基因。The 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) gene may be isolated from Agrobacterium tumefaciens sp. CP4 strain and may be optimized by codon or otherwise Polynucleotides encoding EPSPS for the purpose of increasing the stability and availability of transcripts in transformed cells. The 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) gene can also be used as a selectable marker gene.
所述“草甘膦”是指N-膦酰甲基甘氨酸和它的盐,用“草甘膦除草剂”处理是指使用任何一种含有草甘膦的除草剂制剂进行处理。为了达到有效生物学剂量而对某种草甘膦制剂使用率的选择不超过普通农艺技术人员的技能。使用任何一种含有草甘膦的除草剂制剂处理包含了来源于抗除草剂玉米植物DBN9888的植物材料的田地,将控制所述田地中的杂草生长,并且不影响来源于除草剂耐受性玉米植物DBN9888的植物材料的生长或产量。The "glyphosate" refers to N-phosphonomethylglycine and its salts, and treatment with "glyphosate herbicide" means treatment with any herbicide preparation containing glyphosate. The choice of the use rate of a certain glyphosate formulation in order to achieve an effective biological dose does not exceed the skill of a general agronomic technician. Treatment of plants containing plant material derived from herbicide-tolerant corn plant DBN9888 using any of the glyphosate-containing herbicide formulations will control weed growth in the field without affecting herbicide tolerance Growth or yield of plant material for corn plant DBN9888.
从链霉菌(Streptomyces viridochromogenes)分离的酶膦丝菌素N-乙酰基转移酶(phosphinothricin N-acetyltransferase,PAT)基因通过乙酰化催化L-膦丝菌素转化为其无活性形式,以赋予植物对草铵膦除草剂的耐受性。Phosphinothricin(PTC,2-氨基-4-甲膦酰丁酸)是谷氨酰胺合成酶的抑制剂。PTC是抗生素2-氨基-4-甲膦酰-丙氨酰-丙氨酸的结构单位,此三肽(PTT)具有抗革兰氏阳性和革兰氏阴性细菌以及抗真菌灰葡萄孢(Botrytis cinerea)的活性。膦丝菌素N-乙酰基转移酶(PAT)基因也可以作为选择性标记基因。The phosphinothricin N-acetyltransferase (PAT) gene isolated from Streptomyces viridochromogenes is converted to its inactive form by acetylation to catalyze the conversion of L-phosphinothricin to the plant Tolerance of glufosinate herbicides. Phosphinothricin (PTC, 2-amino-4-methylphosphonobutyrate) is an inhibitor of glutamine synthetase. PTC is the structural unit of the antibiotic 2-amino-4-methylphosphono-alanyl-alanine. This tripeptide (PTT) has anti-gram-positive and Gram-negative bacteria and antifungal Botrytis cinerea (Botrytis). Activity of cinerea). The phosphinothricin N-acetyltransferase (PAT) gene can also be used as a selectable marker gene.
所述“草铵膦”又名草丁膦,是指2-氨基-4-[羟基(甲基)膦酰基]丁酸铵,用“草铵膦除草剂”处理是指使用任何一种含有草铵膦的除草剂制剂进行处理。为了达到有效生物学剂量而对某种草铵膦制剂使用率的选择不超过普通农艺技术人员的技能。使用任何一种含有草铵膦的除草剂制剂处理包含了来源于除草剂耐受性玉米植物DBN9888的植物材料的田地,将控制所述田地中的杂草生长,并且不影响来源于除草剂耐受性玉米植物DBN9888的植物材料的生长或产量。 The "glufosinate", also known as glufosinate, refers to ammonium 2-amino-4-[hydroxy(methyl)phosphono]butanoate, and treatment with "glufosinate herbicide" means using any one of The herbicide formulation of glufosinate is treated. In order to achieve an effective biological dose, the choice of the use rate of a certain glufosinate formulation does not exceed the skill of a general agronomic technician. Treatment of plants containing plant material derived from herbicide-tolerant corn plant DBN9888 using any herbicide formulation containing glufosinate will control weed growth in the field without affecting herbicide resistance Growth or yield of plant material of the recipient maize plant DBN9888.
所述DNA构建体采用转化方法被引入到植物中,所述转化方法包括但不限于,农杆菌(Agrobacterium)介导转化法、基因枪转化法和花粉管通道转化法。The DNA construct is introduced into a plant using a transformation method including, but not limited to, Agrobacterium-mediated transformation, gene gun transformation, and pollen tube pathway transformation.
所述农杆菌介导转化法是植物转化的常用方法。将要引入到植物中的外源DNA克隆到载体的左和右边界共有序列之间,即T-DNA区。所述载体被转化到农杆菌细胞中,随后,所述农杆菌细胞用于感染植物组织,包含外源DNA的载体的所述T-DNA区被插入到植物基因组中。The Agrobacterium-mediated transformation method is a common method for plant transformation. The foreign DNA to be introduced into the plant is cloned between the left and right border consensus sequences of the vector, i.e., the T-DNA region. The vector is transformed into Agrobacterium cells, and subsequently, the Agrobacterium cells are used to infect plant tissues, and the T-DNA region of the vector containing the foreign DNA is inserted into the plant genome.
所述基因枪转化法即为用包含外源DNA的载体轰击植物细胞(粒子介导的生物弹击转化)。The gene gun transformation method is to bombard plant cells (particle-mediated biological bombardment transformation) with a vector containing foreign DNA.
所述花粉管通道转化法是利用植物授粉后所形成的天然的花粉管通道(又名花粉管引导组织),经珠心通道,将外源DNA携带入胚囊。The pollen tube channel transformation method utilizes a natural pollen tube channel (also known as a pollen tube-guided tissue) formed after pollination of a plant, and carries the foreign DNA into the embryo sac via the nucellus channel.
转化后,必须从转化的植物组织再生转基因植物,并且利用适合的标记选择具有外源DNA的后代。After transformation, the transgenic plants must be regenerated from the transformed plant tissue and the progeny with the exogenous DNA selected using appropriate markers.
DNA构建体是DNA分子互相连接起来的组合,该组合提供了一个或多个表达盒。DNA构建体优选地是能够在细菌细胞内自我复制,而且含有不同的限制性内切酶位点的质粒,所含的限制性内切酶位点用于导入提供功能性基因元件,即启动子、内含子、前导序列、编码序列、3’终止子区域和其他序列的DNA分子。DNA构建体中所含有的表达盒包括提供信使RNA的转录所必需的基因元件,所述表达盒可以设计为在原核细胞或真核细胞中表达。本发明的表达盒被设计为最优选地在植物细胞内表达。A DNA construct is a combination of DNA molecules interconnected that provides one or more expression cassettes. The DNA construct is preferably a plasmid capable of self-replication in bacterial cells and containing different restriction enzyme sites, and the restriction enzyme sites contained therein are introduced for providing functional gene elements, ie, promoters. , introns, leader sequences, coding sequences, 3' terminator regions, and other sequences of DNA molecules. The expression cassette contained in the DNA construct includes genetic elements necessary for providing transcription of messenger RNA, which can be designed to be expressed in prokaryotic or eukaryotic cells. The expression cassettes of the invention are designed to be most preferably expressed in plant cells.
转基因“事件”是通过用异源DNA构建体转化植物细胞而得到的,即包括一个含有目标基因的核酸表达盒,通过转基因的方法插入到植物基因组中以产生的植物群体,再生所述植物群体,和选择具有插入特定基因组位点特征的特定植株。术语“事件”指包括异源DNA的原始转化体和该转化体的后代。术语“事件”还指转化体和含有异源DNA的其他品种个体之间进行有性杂交而得到的后代,即使在与回交亲本进行反复回交后,来自于转化体亲本的插入DNA和侧翼基因组DNA也存在于杂交后代中的同一染色体位置。术语“事件”还指来自原始转化体的DNA序列,该DNA序列包含插入DNA和与插入DNA紧密相邻的侧翼基因组序列,该DNA序列被预期转移到子代中,该子代由含 有插入DNA的亲本系(例如原始转化体和其自交产生的子代)与不含有插入DNA的亲本系进行有性杂交而产生,且该子代接受了包含目标基因的插入DNA。A transgenic "event" is obtained by transforming a plant cell with a heterologous DNA construct, comprising a nucleic acid expression cassette containing the gene of interest, inserted into the plant genome by a transgenic method to produce a plant population, and regenerating the plant population And selecting a particular plant with the characteristics of insertion into a particular genomic locus. The term "event" refers to an original transformant comprising a heterologous DNA and progeny of the transformant. The term "event" also refers to progeny obtained by sexual crossing between a transformant and another variety of individuals containing heterologous DNA, even after repeated backcrossing with the backcross parent, insert DNA and flanking from the transformant parent. Genomic DNA is also present at the same chromosomal location in the progeny of the cross. The term "event" also refers to a DNA sequence from an original transformant comprising an insert DNA and a flanking genomic sequence immediately adjacent to the inserted DNA, the DNA sequence being expected to be transferred to a progeny comprising A parental line in which the inserted DNA (for example, the original transformant and its progeny produced by selfing) is sexually hybridized with a parental line that does not contain the inserted DNA, and the progeny receives the inserted DNA containing the target gene.
本发明中“重组”是指通常不能在自然界中发现并且因此通过人工干预产生的DNA和/或蛋白和/或生物体的形式。这种人工干预可产生重组DNA分子和/或重组植物。所述“重组DNA分子”是通过人工组合两种在其他情况下是分离的序列区段而获得的,例如通过化学合成或通过遗传工程技术操作分离的核酸区段。进行核酸操作的技术是众所周知的。"Recombinant" in the context of the invention refers to the form of DNA and/or proteins and/or organisms that are normally not found in nature and are thus produced by human intervention. Such manual intervention can produce recombinant DNA molecules and/or recombinant plants. The "recombinant DNA molecule" is obtained by artificially combining two sequence segments which are otherwise isolated, for example by chemical synthesis or by manipulation of isolated nucleic acid segments by genetic engineering techniques. Techniques for performing nucleic acid manipulation are well known.
术语“转基因”包括任何细胞、细胞系、愈伤组织、组织、植物部分或植物,以上的基因型由于异源核酸的存在而改变,所述“转基因”包括最初被这样改变的转基因体以及由最初的转基因体通过有性杂交或无性繁殖生成的子代个体。在本发明中,术语“转基因”不包括通过常规植物育种方法或天然发生事件的基因组的(染色体的或染色体外的)改变,所述天然发生事件例如随机异体受精、非重组病毒感染、非重组细菌转化、非重组转座或自发突变。The term "transgene" includes any cell, cell line, callus, tissue, plant part or plant, and the above genotypes are altered by the presence of a heterologous nucleic acid, including the transgene that was originally altered as such and by The original transgenic body is a progeny individual that is produced by sexual or asexual reproduction. In the present invention, the term "transgene" does not include genomic (chromosomal or extrachromosomal) alterations by conventional plant breeding methods or naturally occurring events, such as random allogeneic fertilization, non-recombinant viral infection, non-recombination. Bacterial transformation, non-recombinant transposition or spontaneous mutation.
本发明中“异源的”是指自然界中第一分子通常不被发现与第二分子组合。例如,分子可以源自第一物种并插入到第二物种的基因组中。因此这种分子对于宿主是异源的并被人工引入宿主细胞的基因组中。"Heterologous" in the context of the invention means that the first molecule in nature is generally not found in combination with the second molecule. For example, a molecule can be derived from a first species and inserted into the genome of a second species. Thus the molecule is heterologous to the host and is artificially introduced into the genome of the host cell.
培养对草甘膦除草剂和草铵膦除草剂具有耐受性的转基因玉米事件DBN9888,通过以下步骤:首先使第一亲本玉米植物与第二亲本玉米植物有性杂交,从而产生了多样的第一代子代植株,所述第一亲本玉米植物由培育自转基因玉米事件DBN9888及其后代的玉米植物组成,该转基因玉米事件DBN9888及其后代是通过利用本发明的对草甘膦除草剂和草铵膦除草剂具有耐受性的表达盒进行转化而得到的,第二亲本玉米植物缺乏对草甘膦除草剂和/或草铵膦除草剂的耐受性;然后选择对草甘膦除草剂和/或草铵膦除草剂的施用具有耐受性的子代植株,可以培育出对草甘膦除草剂和草铵膦除草剂具有耐受性的玉米植物。这些步骤可以进一步包括使对草甘膦除草剂和/或草铵膦除草剂的施用具有耐受性的子代植株与第二亲本玉米植物或第三亲本玉米植物进行回交,然后通过施用草甘膦除草剂、草铵膦除草剂或通过与性状相关的分子标记物(如包含转基因玉米事件DBN9888中插入序列的5’端和3’端鉴定 出的接合位点的DNA分子)的鉴定来选择子代,从而产生对草甘膦除草剂和草铵膦除草剂具有耐受性的玉米植物。The transgenic maize event DBN9888, which is tolerant to the glyphosate herbicide and the glufosinate herbicide, is cultured by first sexually crossing the first parent corn plant with the second parent corn plant, thereby producing a variety of A generation of progeny plants consisting of maize plants grown from the transgenic maize event DBN9888 and its progeny, the transgenic maize event DBN9888 and its progeny by utilizing the glyphosate herbicide and grass of the invention The ammonium phosphine herbicide is obtained by transforming a tolerant expression cassette, and the second parent corn plant lacks tolerance to the glyphosate herbicide and/or glufosinate herbicide; then the glyphosate herbicide is selected And/or glufosinate herbicides are applied to tolerant progeny plants which can produce corn plants that are tolerant to glyphosate herbicides and glufosinate herbicides. These steps may further comprise backcrossing the progeny plants tolerant to the application of the glyphosate herbicide and/or the glufosinate herbicide to the second parent corn plant or the third parent corn plant, and then applying the grass Glyphosate herbicide, glufosinate herbicide or identification by molecular markers associated with traits (eg 5' and 3' ends of the inserted sequence in the transgenic maize event DBN9888) Identification of the DNA molecules of the ligated sites to select progeny, thereby producing corn plants that are tolerant to glyphosate herbicides and glufosinate herbicides.
还应理解的是,两种不同的转基因植物也可以杂交以产生含有两个独立的、分离式添加的外源基因的后代。适当后代的自交可以得到对两个添加的外源基因来说都是纯合子的后代植株。如前所述的对亲本植株的回交和与非转基因植物的异型杂交也是可以预期的,无性繁殖也是同样的。It will also be appreciated that two different transgenic plants can also be crossed to produce progeny containing two separate, separately added exogenous genes. Selfing of appropriate offspring can result in progeny plants that are homozygous for both added exogenous genes. Backcrossing of parental plants and outcrossing with non-transgenic plants as previously described are also contemplated, as are asexual reproduction.
转Bt基因的玉米能杀死例如鳞翅目和鞘翅目的昆虫/害虫,但也存在少量存活下来的昆虫/害虫,经过几代繁殖后,可能产生抗Bt蛋白的抗性昆虫/害虫。为了解决昆虫/害虫产生抗性这个问题,美国环境保护局针对转基因作物的使用给出了如下指导,需提供一定比例的庇护所玉米(关于庇护所玉米要求根据产品不同有5%、10%、20%等。并且可以是非抗虫转基因玉米(如除草剂耐受性转基因玉米),或抗非目标害虫的玉米,并非一定是非转基因玉米)。当绝大部分的昆虫/害虫在相应的转基因抗虫玉米上被杀死后,还有一部分昆虫/害虫在庇护所玉米上没有死,保证了没有抗性的昆虫/害虫群体占统治数量。这样即使有少量存活的抗性昆虫/害虫,与占统治数量的非抗性昆虫/害虫交配后抗性基因也被显著的稀释了。Corn transgenic Bt can kill insects/pests such as Lepidoptera and Coleoptera, but there are also a small number of surviving insects/pests that may produce resistant insects/pests against Bt after several generations of reproduction. In order to solve the problem of insect/pest resistance, the US Environmental Protection Agency has given the following guidance on the use of GM crops, and needs to provide a certain percentage of shelter corn (about 5%, 10% of the requirements for shelter corn). 20%, etc. and may be non-anti-insect transgenic maize (such as herbicide-tolerant transgenic maize), or corn against non-target pests, not necessarily non-GM corn). When most of the insects/pests are killed on the corresponding transgenic insect-resistant corn, some insects/pests are not dead on the shelter corn, ensuring that the unresistant insect/pest population dominates. Thus, even with a small number of surviving resistant insects/pests, the resistance gene is significantly diluted after mating with a dominant number of non-resistant insects/pests.
术语“探针”是一段分离的核酸分子,其上面结合有常规的可检测标记或报告分子,例如,放射性同位素、配体、化学发光剂或酶类。这种探针与目标核酸的一条链是互补的,在本发明中,探针与来自转基因玉米事件DBN9888基因组的一条DNA链互补,不论该基因组DNA是来自转基因玉米事件DBN9888或种子还是来源于转基因玉米事件DBN9888的植物或种子或提取物。本发明的探针不仅包括脱氧核糖核酸或核糖核酸,还包括特异性地与目标DNA序列结合并可用于检测该目标DNA序列的存在的聚酰胺及其他探针材料。The term "probe" is an isolated nucleic acid molecule to which is incorporated a conventional detectable label or reporter molecule, for example, a radioisotope, a ligand, a chemiluminescent agent, or an enzyme. The probe is complementary to a strand of the target nucleic acid, and in the present invention, the probe is complementary to a DNA strand from the genome of the transgenic maize event DBN9888, whether the genomic DNA is derived from the transgenic maize event DBN9888 or from the seed or from the transgene Plant or seed or extract of corn event DBN9888. The probe of the present invention includes not only deoxyribonucleic acid or ribonucleic acid, but also polyamide and other probe materials that specifically bind to a target DNA sequence and can be used to detect the presence of the target DNA sequence.
术语“引物”是一段分离的核酸分子,其通过核酸杂交,退火结合到互补的目标DNA链上,在引物和目标DNA链之间形成杂合体,然后在聚合酶(例如DNA聚合酶)的作用下,沿目标DNA链延伸。本发明的引物对涉及其在目标核酸序列扩增中的应用,例如,通过聚合酶链式反应(PCR)或其他常规的核酸扩增方法。 The term "primer" is an isolated nucleic acid molecule that hybridizes to a complementary target DNA strand by nucleic acid hybridization, forms a hybrid between the primer and the target DNA strand, and then acts as a polymerase (eg, DNA polymerase). Next, extending along the target DNA strand. Primer pairs of the invention are directed to their use in amplification of a target nucleic acid sequence, for example, by polymerase chain reaction (PCR) or other conventional nucleic acid amplification methods.
探针和引物的长度一般是11个多核苷酸或更多,优选的是18个多核苷酸或更多,更优选的是24个多核苷酸或更多,最优选的是30个多核苷酸或更多。这种探针和引物在高度严格杂交条件下与目标序列特异性地杂交。尽管不同于目标DNA序列且对目标DNA序列保持杂交能力的探针是可以通过常规方法设计出来的,但是,优选的,本发明中的探针和引物与目标序列的连续核酸具有完全的DNA序列同一性。The length of the probe and primer is generally 11 polynucleotides or more, preferably 18 polynucleotides or more, more preferably 24 polynucleotides or more, and most preferably 30 polynucleosides. Sour or more. Such probes and primers specifically hybridize to the target sequence under highly stringent hybridization conditions. Although a probe different from the target DNA sequence and capable of maintaining hybridization ability to the target DNA sequence can be designed by a conventional method, preferably, the probe and the primer of the present invention have a complete DNA sequence with the contiguous nucleic acid of the target sequence. Identity.
基于本发明的侧翼基因组DNA和插入序列的引物和探针可以通过常规方法确定,例如,通过从来源于转基因玉米事件DBN9888的植物材料中分离相应的DNA分子,并确定该DNA分子的核酸序列。所述DNA分子包含转基因插入序列和玉米基因组侧翼区域,所述DNA分子的片段可以用作引物或探针。Primers and probes based on the flanking genomic DNA and insert sequences of the present invention can be determined by conventional methods, for example, by isolating a corresponding DNA molecule from a plant material derived from the transgenic maize event DBN9888, and determining the nucleic acid sequence of the DNA molecule. The DNA molecule comprises a transgene insert and a maize genome flanking region, and a fragment of the DNA molecule can be used as a primer or probe.
本发明的核酸探针和引物在严格条件下与目标DNA序列杂交。任何常规的核酸杂交或扩增方法都可以用于鉴定样品中来源于转基因玉米事件DBN9888的DNA的存在。核酸分子或其片段在一定情况下能够与其他核酸分子进行特异性杂交。如本发明使用的,如果两个核酸分子能形成反平行的双链核酸结构,就可以说这两个核酸分子彼此间能够进行特异性杂交。如果两个核酸分子显示出完全的互补性,则称其中一个核酸分子是另一个核酸分子的“互补物”。如本发明使用的,当一个核酸分子的每一个核苷酸都与另一个核酸分子的对应核苷酸互补时,则称这两个核酸分子显示出“完全互补性”。如果两个核酸分子能够以足够的稳定性相互杂交从而使它们在至少常规的“低度严格”条件下退火且彼此结合,则称这两个核酸分子为“最低程度互补”。类似地,如果两个核酸分子能够以足够的稳定性相互杂交从而使它们在常规的“高度严格”条件下退火且彼此结合,则称这两个核酸分子具有“互补性”。从完全互补性中偏离是可以允许的,只要这种偏离不完全阻止两个分子形成双链结构。为了使一个核酸分子能够作为引物或探针,仅需保证其在序列上具有充分的互补性,以使得在所采用的特定溶剂和盐浓度下能形成稳定的双链结构。The nucleic acid probes and primers of the invention hybridize to the target DNA sequence under stringent conditions. Any conventional nucleic acid hybridization or amplification method can be used to identify the presence of DNA derived from the transgenic maize event DBN9888 in the sample. A nucleic acid molecule or fragment thereof is capable of specifically hybridizing to other nucleic acid molecules under certain circumstances. As used in the present invention, if two nucleic acid molecules are capable of forming an anti-parallel double-stranded nucleic acid structure, it can be said that the two nucleic acid molecules are capable of specifically hybridizing to each other. If two nucleic acid molecules exhibit complete complementarity, one of the nucleic acid molecules is said to be the "complement" of the other nucleic acid molecule. As used herein, when each nucleotide of one nucleic acid molecule is complementary to a corresponding nucleotide of another nucleic acid molecule, the two nucleic acid molecules are said to exhibit "complete complementarity." Two nucleic acid molecules are said to be "minimally complementary" if they are capable of hybridizing to one another with sufficient stability such that they anneal under at least conventional "low stringency" conditions and bind to each other. Similarly, two nucleic acid molecules are said to be "complementary" if they are capable of hybridizing to one another with sufficient stability such that they anneal under conventional "highly stringent" conditions and bind to each other. Deviation from complete complementarity is permissible as long as such deviation does not completely prevent the two molecules from forming a double-stranded structure. In order for a nucleic acid molecule to function as a primer or probe, it is only necessary to ensure that it is sufficiently complementary in sequence to allow for the formation of a stable double-stranded structure at the particular solvent and salt concentration employed.
如本发明使用的,基本同源的序列是一段核酸分子,该核酸分子在高度严格条件下能够和相匹配的另一段核酸分子的互补链发生特异性杂交。促进DNA杂交的适合的严格条件,例如,大约在45℃条件下用6.0×氯化钠/柠檬酸钠(SSC)处理,然后在50℃条件下用2.0×SSC洗涤,这些条件对本领域技 术人员是公知的。例如,在洗涤步骤中的盐浓度可以选自低度严格条件的约2.0×SSC、50℃到高度严格条件的约0.2×SSC、50℃。此外,洗涤步骤中的温度条件可以从低度严格条件的室温约22℃,升高到高度严格条件的约65℃。温度条件和盐浓度可以都发生改变,也可以其中一个保持不变而另一个变量发生改变。优选地,本发明的一个核酸分子可以在中度严格条件下,例如在约2.0×SSC和约65℃下与SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7中一个或多个核酸分子或其互补序列,或者上述序列的任一片段发生特异性杂交。更优选地,本发明的一个核酸分子在高度严格条件下与SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7中一个或多个核酸分子或其互补序列,或者上述序列的任一片段发生特异性杂交。本发明中,优选的标记物核酸分子具有SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:6或SEQ ID NO:7或其互补序列,或者上述序列的任一片段。本发明另一优选的标记物核酸分子与SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:6或SEQ ID NO:7或其互补序列,或者上述序列的任一片段具有80%到100%或90%到100%的序列同一性。SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:6和SEQ ID NO:7可以用作植物育种方法中的标记物以鉴定遗传杂交的后代。探针与目标DNA分子的杂交可以通过任何一种为本领域技术人员所熟知的方法进行检测,这些方法包括但不限于,荧光标记、放射性标记、抗体类标记和化学发光标记。As used herein, a substantially homologous sequence is a nucleic acid molecule that is capable of specifically hybridizing to a complementary strand of another nucleic acid molecule that is matched under highly stringent conditions. Suitable stringent conditions for promoting DNA hybridization, for example, treatment with 6.0 x sodium chloride / sodium citrate (SSC) at about 45 ° C, followed by washing with 2.0 x SSC at 50 ° C, these conditions are technical The surgeon is well known. For example, the salt concentration in the washing step can be selected from about 2.0 x SSC under low stringency conditions, 50 ° C to about 0.2 x SSC, 50 ° C under highly stringent conditions. Further, the temperature conditions in the washing step can be raised from a low temperature strict room temperature of about 22 ° C to about 65 ° C under highly stringent conditions. Both the temperature conditions and the salt concentration can be changed, or one of them remains unchanged while the other variable changes. Preferably, a nucleic acid molecule of the invention can be under moderate stringency conditions, for example at about 2.0 x SSC and about 65 ° C with SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4. One or more nucleic acid molecules of SEQ ID NO: 5, SEQ ID NO: 6 and SEQ ID NO: 7 or a complement thereof, or any fragment of the above sequence that specifically hybridizes. More preferably, a nucleic acid molecule of the invention is under highly stringent conditions with SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 6 and one or more of the nucleic acid molecules of SEQ ID NO: 7 or a complement thereof, or any of the above sequences, specifically hybridize. In the present invention, a preferred marker nucleic acid molecule has SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 6 or SEQ ID NO: 7 or its complement, or any fragment of the above sequence. Another preferred marker nucleic acid molecule of the invention has 80% to SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 6 or SEQ ID NO: 7 or a complement thereof, or any fragment of the above sequence 100% or 90% to 100% sequence identity. SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 6 and SEQ ID NO: 7 can be used as markers in plant breeding methods to identify progeny of genetic crosses. Hybridization of the probe to the target DNA molecule can be detected by any method known to those skilled in the art including, but not limited to, fluorescent labeling, radioactive labeling, antibody labeling, and chemiluminescent labeling.
关于使用特定的扩增引物对目标核酸序列进行的扩增(例如,通过PCR),“严格条件”指的是在DNA热扩增反应中仅允许引物对目标核酸序列发生杂交的条件,具有与目标核酸序列相应的野生型序列(或其互补序列)的引物,能够与所述目标核酸序列结合,并且优选产生唯一的扩增产物,扩增产物即扩增子。Regarding amplification of a target nucleic acid sequence using a specific amplification primer (for example, by PCR), "stringent conditions" refer to conditions in which only primers are allowed to hybridize to a target nucleic acid sequence in a DNA thermal amplification reaction, and A primer for the corresponding wild-type sequence (or its complement) of the target nucleic acid sequence is capable of binding to the target nucleic acid sequence, and preferably produces a unique amplification product, the amplification product, ie, the amplicon.
术语“特异性结合(目标序列)”是指在严格杂交条件下探针或引物仅与包含目标序列的样品中的目标序列发生杂交。The term "specific binding (target sequence)" means that the probe or primer hybridizes only to the target sequence in the sample containing the target sequence under stringent hybridization conditions.
如本发明使用的,“经过扩增的DNA”或“扩增子”是指作为核酸模板一部分的目标核酸序列的核酸扩增产物。例如,为了确定玉米植物是否由含有本 发明转基因玉米事件DBN9888通过有性杂交方式产生,或采集自田地的玉米样品是否包含转基因玉米事件DBN9888,或玉米提取物,例如粗粉、粉或油是否包含转基因玉米事件DBN9888,从玉米植物组织样品或提取物提取的DNA可以通过使用引物对的核酸扩增方法以产生对于转基因玉米事件DBN9888的DNA的存在是诊断性的扩增子。所述引物对包括一个来源于植物基因组中与插入的外源DNA插入位点相邻的侧翼序列的第一引物,和来源于插入的外源DNA的第二引物。扩增子具有一定长度和序列,所述序列对所述转基因玉米事件DBN9888也是诊断性的。扩增子的长度范围可以是引物对的结合长度加上一个核苷酸碱基对,优选加上约五十个核苷酸碱基对,更优选加上约两百五十个核苷酸碱基对,最优选加上约四百五十个核苷酸碱基对或更多。As used herein, "amplified DNA" or "amplicon" refers to a nucleic acid amplification product of a target nucleic acid sequence that is part of a nucleic acid template. For example, to determine if a corn plant contains The invention of the transgenic maize event DBN9888 was produced by sexual hybridization, or whether the corn sample collected from the field contained the transgenic maize event DBN9888, or the corn extract, such as coarse powder, flour or oil containing the transgenic corn event DBN9888, from the corn plant tissue sample Alternatively, the extracted DNA may be a diagnostic amplicon by a nucleic acid amplification method using a primer pair to generate a DNA for the transgenic maize event DBN9888. The primer pair includes a first primer derived from a flanking sequence adjacent to the inserted foreign DNA insertion site in the plant genome, and a second primer derived from the inserted foreign DNA. The amplicon has a length and sequence that is also diagnostic for the transgenic maize event DBN9888. The length of the amplicon may be the binding length of the primer pair plus one nucleotide base pair, preferably plus about fifty nucleotide base pairs, more preferably about two hundred and fifty nucleotides. Base pairs, most preferably plus about four hundred and fifty nucleotide base pairs or more.
可选的,引物对可以来源于插入DNA两侧的侧翼基因组序列,以产生包括整个插入核苷酸序列的扩增子。来源于植物基因组序列的引物对中的一个可以位于距插入DNA序列一定距离处,该距离的范围可以为一个核苷酸碱基对到约两万个核苷酸碱基对。术语“扩增子”的使用特别排除了在DNA热扩增反应中形成的引物二聚体。Alternatively, the primer pair can be derived from a flanking genomic sequence inserted on both sides of the DNA to produce an amplicon comprising the entire inserted nucleotide sequence. One of the primer pairs derived from the plant genome sequence can be located at a distance from the inserted DNA sequence, which can range from one nucleotide base pair to about 20,000 nucleotide base pairs. The use of the term "amplicon" specifically excludes primer dimers formed in DNA thermal amplification reactions.
核酸扩增反应可以通过本领域已知的任何一种核酸扩增反应方法实现,包括聚合酶链式反应(PCR)。各种核酸扩增方法已是本领域技术人员所熟知的。PCR扩增方法已经发展到可扩增多达22kb的基因组DNA和多达42kb的噬菌体DNA。这些方法以及本领域的其他DNA扩增方法可以用于本发明。插入的外源DNA序列和来自转基因玉米事件DBN9888的侧翼DNA序列可以通过利用所提供的引物序列对转基因玉米事件DBN9888的基因组进行扩增,扩增后对PCR扩增子或克隆的DNA进行标准的DNA测序。The nucleic acid amplification reaction can be carried out by any of the nucleic acid amplification reaction methods known in the art, including polymerase chain reaction (PCR). Various nucleic acid amplification methods are well known to those skilled in the art. PCR amplification methods have been developed to amplify up to 22 kb of genomic DNA and up to 42 kb of phage DNA. These methods, as well as other DNA amplification methods in the art, can be used in the present invention. The inserted exogenous DNA sequence and the flanking DNA sequence from the transgenic maize event DBN9888 can be amplified by using the provided primer sequences for the genome of the transgenic maize event DBN9888, and the PCR amplicon or cloned DNA is subjected to standardization after amplification. DNA sequencing.
基于DNA扩增方法的DNA检测试剂盒含有DNA引物分子,它们在适当的反应条件下特异性杂交到目标DNA上并扩增诊断性扩增子。试剂盒可提供基于琼脂糖凝胶的检测方法或者现有技术已知的检测诊断性扩增子的许多方法。含有与SEQ ID NO:3或SEQ ID NO:4的玉米基因组区的任何部分同源或互补的、以及与SEQ ID NO:5的转基因插入区的任何部分同源或互补的DNA引物的试剂盒是本发明所提供的。特别地鉴别在DNA扩增方法中有用的引物 对是SEQ ID NO:8和SEQ ID NO:9,其扩增与转基因玉米事件DBN9888的5’转基因/基因组区的一部分同源的诊断性扩增子,其中扩增子包括SEQ ID NO:1。用作DNA引物的其他DNA分子可选自SEQ ID NO:5。A DNA detection kit based on a DNA amplification method contains DNA primer molecules which specifically hybridize to a target DNA under appropriate reaction conditions and amplify a diagnostic amplicon. The kit can provide agarose gel based detection methods or a number of methods known in the art for detecting diagnostic amplicons. Kit comprising a DNA primer homologous or complementary to any portion of the maize genomic region of SEQ ID NO: 3 or SEQ ID NO: 4, and homologous or complementary to any portion of the transgene insertion region of SEQ ID NO: 5 It is provided by the present invention. Particularly identifying primers useful in DNA amplification methods SEQ ID NO: 8 and SEQ ID NO: 9, which amplify a diagnostic amplicon homologous to a portion of the 5' transgene/genomic region of transgenic maize event DBN9888, wherein the amplicon comprises SEQ ID NO:1 . Other DNA molecules used as DNA primers may be selected from SEQ ID NO:5.
这些方法所产生的扩增子可以通过多种技术进行检测。其中一个方法是Genetic Bit Analysis,该方法设计了一个跨越插入DNA序列和相邻的侧翼基因组DNA序列的DNA寡核苷酸链。将该寡核苷酸链固定在一个微孔板的微孔内,在对目标区域进行PCR扩增后(在插入序列内和相邻的侧翼基因组序列中各使用一个引物),单链PCR产物可与固定的寡核苷酸链进行杂交,并且作为单碱基延伸反应的模板,该延伸反应使用了DNA聚合酶和为下一个预期的碱基特定标记的ddNTPs。可以通过荧光或ELISA类方法得到结果。信号代表了插入/侧翼序列的存在,其说明扩增、杂交和单碱基延伸反应是成功的。The amplicons produced by these methods can be detected by a variety of techniques. One such method is Genetic Bit Analysis, which designs a DNA oligonucleotide strand spanning the inserted DNA sequence and adjacent flanking genomic DNA sequences. The oligonucleotide strand is immobilized in the microwell of a microplate, and after PCR amplification of the target region (one primer is used in each of the inserted sequences and adjacent flanking genomic sequences), the single-stranded PCR product Hybridization can be performed with a fixed oligonucleotide strand and as a template for a single base extension reaction using a DNA polymerase and ddNTPs specifically labeled for the next expected base. The results can be obtained by fluorescence or ELISA methods. The signal represents the presence of an insert/flanking sequence indicating that amplification, hybridization and single base extension reactions were successful.
另一种方法是焦磷酸测序(Pyrosequencing)技术。该方法设计了一个跨越插入DNA序列和相邻的基因组DNA结合部位的寡核苷酸链。将该寡核苷酸链和目标区域的单链PCR产物(在插入序列内和相邻的侧翼基因组序列中各使用一个引物)进行杂交,然后和DNA聚合酶、ATP、硫酰基酶、荧光素酶、三磷酸腺苷双磷酸酶、腺苷-5’-磷硫酸盐和萤光素一起进行温育。分别加入dNTPs,测量产生的光信号。光信号代表了插入/侧翼序列的存在,其说明扩增、杂交、和单碱基或多碱基延伸反应是成功的。Another method is the pyrosequencing technique. This method designs an oligonucleotide chain spanning the inserted DNA sequence and the adjacent genomic DNA binding site. Hybridization of the oligonucleotide strand and the single-stranded PCR product of the target region (using one primer in each of the inserted sequences and adjacent flanking genomic sequences), followed by DNA polymerase, ATP, sulfurylase, fluorescein The enzyme, apyrase, adenosine-5'-phosphorus sulphate and luciferin are incubated together. The dNTPs were separately added and the generated optical signal was measured. The light signal represents the presence of an insertion/flanking sequence indicating that amplification, hybridization, and single base or multiple base extension reactions are successful.
Chen等(基因组研究(Genome Res.)9:492-498,1999)描述的荧光偏振现象也是可以用于检测本发明扩增子的一种方法。使用这种方法需要设计一个跨越插入DNA序列和相邻的基因组DNA结合部位的寡核苷酸链。将该寡核苷酸链和目标区域的单链PCR产物(在插入序列内和相邻的侧翼基因组序列中各使用一个引物)进行杂交,然后和DNA聚合酶以及一种荧光标记的ddNTP一起进行温育。单碱基延伸会导致插入ddNTP。这种插入可以利用荧光仪测量其偏振的改变。偏振的改变代表了插入/侧翼序列的存在,其说明扩增、杂交和单碱基延伸反应是成功的。The fluorescence polarization phenomenon described by Chen et al. (Genome Res. 9: 492-498, 1999) is also a method that can be used to detect the amplicons of the present invention. Using this approach requires designing an oligonucleotide strand spanning the inserted DNA sequence and the adjacent genomic DNA binding site. Hybridization of the oligonucleotide strand and the single-stranded PCR product of the target region (using one primer in each of the inserted sequences and adjacent flanking genomic sequences), followed by DNA polymerase and a fluorescently labeled ddNTP Incubation. Single base extensions result in the insertion of ddNTPs. This insertion can be used to measure changes in its polarization using a fluorometer. The change in polarization represents the presence of an insert/flanking sequence indicating that amplification, hybridization and single base extension reactions were successful.
Taqman被描述为一种检测和定量分析DNA序列存在的方法,该方法在制造商所提供的使用说明中有详细介绍。现简要举例说明如下,设计一个跨越插入DNA序列和相邻的基因组侧翼结合部位的FRET寡核苷酸探针。该FRET 探针和PCR引物(在插入序列内和相邻的侧翼基因组序列中各使用一个引物)在热稳定聚合酶和dNTPs存在下进行循环反应。FRET探针的杂交导致FRET探针上荧光部分和淬灭部分的分裂以及荧光部分的释放。荧光信号的产生代表了插入/侧翼序列的存在,其说明扩增和杂交是成功的。Taqman is described as a method for detecting and quantifying the presence of DNA sequences, which is described in detail in the instructions provided by the manufacturer. Briefly exemplified, a FRET oligonucleotide probe spanning the inserted DNA sequence and the adjacent genomic flanking binding site is designed. The FRET The probe and PCR primers (one primer used in each of the inserted sequences and adjacent flanking genomic sequences) were subjected to a circular reaction in the presence of a thermostable polymerase and dNTPs. Hybridization of the FRET probe results in cleavage of the fluorescent and quenching moieties on the FRET probe and release of the fluorescent moiety. The generation of the fluorescent signal represents the presence of an insert/flanking sequence indicating that amplification and hybridization were successful.
基于杂交原理,用于检测来源于除草剂耐受性转基因玉米事件DBN9888的植物材料的适合技术还可以包括Southern印迹杂交、Northern印迹杂交和原位杂交。特别地,所述适合技术包括温育探针和样品,洗涤以移除未结合的探针和检测探针是否已经杂交。所述的检测方法取决于探针所附标记的类型,例如,通过X光片曝光和显影可以检测放射性标记的探针,或通过底物转化实现颜色变化可以检测酶标记的探针。Suitable techniques for detecting plant material derived from the herbicide tolerance transgenic maize event DBN9888 can also include Southern blot hybridization, Northern blot hybridization, and in situ hybridization based on the hybridization principle. In particular, such suitable techniques include incubating probes and samples, washing to remove unbound probes and detecting whether the probes have hybridized. The detection method depends on the type of label attached to the probe, for example, the radiolabeled probe can be detected by X-ray exposure and development, or the enzyme-labeled probe can be detected by color change by substrate conversion.
Tyangi等(自然生物技术(Nat.Biotech.)14:303-308,1996)介绍了分子标记在序列检测中的应用。简要说明如下,设计一个跨越插入DNA序列和相邻的基因组侧翼结合部位的FRET寡核苷酸探针。该FRET探针的独特结构导致其含有二级结构,该二级结构能够在近距离内保持荧光部分和淬灭部分。该FRET探针和PCR引物(在插入序列内和相邻的侧翼基因组序列中各使用一个引物)在热稳定聚合酶和dNTPs存在下进行循环反应。经过成功的PCR扩增,FRET探针和目标序列的杂交导致探针二级结构的丧失,从而使荧光部分和淬灭部分在空间上发生分离,产生荧光信号。荧光信号的产生代表了插入/侧翼序列的存在,其说明扩增和杂交是成功的。Tyangi et al. (Nat. Biotech. 14: 303-308, 1996) describe the use of molecular markers in sequence detection. Briefly described below, a FRET oligonucleotide probe spanning the inserted DNA sequence and the adjacent genomic flanking binding site was designed. The unique structure of the FRET probe results in a secondary structure that is capable of maintaining the fluorescent moiety and the quenching moiety at close distances. The FRET probe and PCR primers (using one primer in each of the inserted sequences and adjacent flanking genomic sequences) are subjected to a circular reaction in the presence of a thermostable polymerase and dNTPs. Upon successful PCR amplification, hybridization of the FRET probe to the target sequence results in loss of the secondary structure of the probe, thereby spatially separating the fluorescent moiety from the quenching moiety, producing a fluorescent signal. The generation of the fluorescent signal represents the presence of an insert/flanking sequence indicating that amplification and hybridization were successful.
其他描述的方法,例如微流体(microfluidics)提供了分离和扩增DNA样品的方法和设备。光染料用于检测和测定特定的DNA分子。包含用于检测DNA分子的电子传感器或结合特定DNA分子的纳珠并因而可被检测的纳试管(nanotube)设备对于检测本发明的DNA分子是有用的。Other described methods, such as microfluidics, provide methods and apparatus for isolating and amplifying DNA samples. Light dyes are used to detect and measure specific DNA molecules. A nanotube device comprising an electronic sensor for detecting a DNA molecule or a nanobead that binds to a specific DNA molecule and thus detectable is useful for detecting the DNA molecule of the present invention.
可以使用本发明所述的组合物和DNA检测领域描述的或已知的方法来开发DNA检测试剂盒。所述试剂盒有利于鉴定样品中是否存在转基因玉米事件DBN9888的DNA,还可以用于培育含有转基因玉米事件DBN9888的DNA的玉米植物。所述试剂盒可以含有DNA引物或探针,其同源于或互补于SEQ ID NO:1、2、3、4或5的至少一部分,或含有其他DNA引物或探针,其同源于或互补于DNA的转基因遗传元件中所含的DNA,这些DNA序列可以用于 DNA扩增反应,或作为DNA杂交方法中的探针。在玉米基因组中含有的以及在图1和表1中说明的转基因插入序列与玉米基因组结合部位的DNA结构包含:位于转基因插入序列5’末端的玉米植物DBN9888侧翼基因组区域,来自农杆菌的左侧边界区域(LB)的一部分插入序列,第一个表达盒由含有增强子区域的串联重复的花椰菜花叶病毒35S启动子(pr35S),可操作地连接到链霉菌的草铵膦耐受性的膦丝菌素N-乙酰基转移酶(cPAT)上,并可操作地连接到花椰菜花叶病毒35S终止子(t35S)上而组成,第二个表达盒由水稻肌动蛋白1启动子(prOsAct1),可操作连接到拟南芥EPSPS叶绿体转运肽的编码序列(spAtCTP2)上,可操作连接到土壤杆菌属CP4菌株的草甘膦耐受性的5-烯醇-丙酮酰莽草酸-3-磷酸合酶(cEPSPS)上,可操作连接到胭脂碱合酶的转录终止子(tNos)上而组成,来自农杆菌的右侧边界区域(RB)的一部分插入序列,以及位于转基因插入序列3’末端的玉米植物DBN9888侧翼基因组区域(SEQ ID NO:5)。在DNA扩增方法中,作为引物的DNA分子可以是来源于玉米植物DBN9888中转基因插入序列的任何部分,也可以是来源于转基因玉米事件DBN9888中侧翼玉米基因组的DNA区域的任何部分。DNA detection kits can be developed using the compositions described herein and methods described or known in the art of DNA detection. The kit facilitates the identification of the presence of DNA from the transgenic maize event DBN9888 in the sample and can also be used to grow corn plants containing the DNA of the transgenic maize event DBN9888. The kit may contain a DNA primer or probe that is homologous or complementary to at least a portion of SEQ ID NO: 1, 2, 3, 4, or 5, or contains other DNA primers or probes that are homologous to or DNA complementary to DNA-transgenic genetic elements that can be used for DNA sequences DNA amplification reaction, or as a probe in DNA hybridization methods. The DNA structure contained in the maize genome and the transgenic insert sequence described in Figure 1 and Table 1 and the maize genome binding site comprises: the maize plant DBN9888 flanking genomic region located at the 5' end of the transgene insert, from the left side of the Agrobacterium A portion of the border region (LB) is inserted into the sequence, and the first expression cassette is operably linked to the glufosinate tolerance of the Streptomyces by the tandem repeat of the cauliflower mosaic virus 35S promoter (pr35S) containing the enhancer region The phosphinothricin N-acetyltransferase (cPAT) is operably linked to the cauliflower mosaic virus 35S terminator (t35S) and the second expression cassette consists of the rice actin 1 promoter (prOsAct1). Is operatively linked to the Arabidopsis EPSPS chloroplast transit peptide coding sequence (spAtCTP2), operably linked to the Agrobacterium CP4 strain of glyphosate-tolerant 5-enol-pyruvylshikimate-3- Phosphate synthase (cEPSPS), operably linked to the transcriptional terminator (tNos) of nopaline synthase, a part of the insert from the right border region (RB) of Agrobacterium, and a transgene insertion sequence The 3'-end maize plant DBN9888 flanking genomic region (SEQ ID NO: 5). In the DNA amplification method, the DNA molecule as a primer may be any part derived from a transgene insert in the maize plant DBN9888, or may be any part of the DNA region derived from the flanking maize genome in the transgenic maize event DBN9888.
转基因玉米事件DBN9888可以与其他转基因玉米品种组合,例如除草剂耐受性(如2,4-D、麦草畏等)的玉米,或携带其他抗虫基因(如Cry1Ab、Vip3A等)的转基因玉米品种。所有这些不同转基因事件的各种组合,与本发明的转基因玉米事件DBN9888一起育种,可以提供抗多种虫害并耐受多种除草剂的改良杂种转基因玉米品种。这些品种相比于非转基因品种和单性状的转基因品种可以表现出产量提升等更优异的特征。The genetically modified maize event DBN9888 can be combined with other transgenic maize varieties, such as corn for herbicide tolerance (eg 2,4-D, dicamba, etc.) or transgenic maize varieties carrying other insect-resistant genes (eg Cry1Ab, Vip3A, etc.) . Various combinations of all of these different transgenic events, bred together with the transgenic maize event DBN9888 of the present invention, can provide improved hybrid transgenic maize varieties that are resistant to a variety of pests and tolerant to a variety of herbicides. These varieties can exhibit more excellent characteristics such as yield increase than non-transgenic varieties and single-trait transgenic varieties.
本发明提供了一种用于检测除草剂耐受性玉米植物DBN9888的核酸序列及其检测方法,转基因玉米事件DBN9888耐受含草甘膦和/或草铵膦的农业除草剂的植物毒性作用。该双重性状的玉米植株表达土壤杆菌属菌株CP4的草甘膦抗性的5-烯醇丙酮酰莽草酸-3-磷酸合酶(EPSPS)蛋白,其赋予植物对草甘膦的耐受性,并表达链霉菌的草铵膦抗性的膦丝菌素N-乙酰基转移酶(PAT)蛋白,其赋予植物对草铵膦的耐受性。双重性状玉米具有如下优点:1)施加含草甘膦的农业除草剂给玉米作物用于广谱杂草控制的能力;2)草铵膦耐受性性状组合使用草铵膦除草剂(与草甘膦除草剂混合或交替使用)可以作为一 种有效管理草甘膦抗性杂草的非选择性手段;3)除草剂耐受性转基因玉米作为非抗虫转基因玉米,与转基因抗虫玉米以一定比例一并种植,可以延缓昆虫/害虫产生抗性;4)玉米产量没有降低。此外,编码草甘膦耐受性和草铵膦耐受性性状的基因连锁在同一DNA区段上,并且存在于转基因玉米事件DBN9888基因组的单一基因座上,这一点提供了增强的育种效率并使得能够用分子标记来追踪繁殖群体及其子代中的转基因插入片段。同时本发明检测方法中SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、或者SEQ ID NO:7或其互补序列可以作为DNA引物或探针以产生诊断为转基因玉米事件DBN9888或其后代的扩增产物,且可以快速、准确、稳定的鉴定出来源于转基因玉米事件DBN9888的植物材料的存在。The present invention provides a nucleic acid sequence for detecting a herbicide-tolerant maize plant DBN9888 and a method for detecting the same, and the transgenic maize event DBN9888 is resistant to the phytotoxic effects of an agricultural herbicide containing glyphosate and/or glufosinate. The dual-characterized maize plant expresses a glyphosate-resistant 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) protein of Agrobacterium strain CP4, which confers tolerance to glyphosate to the plant, The glufosinate-resistant phosphinothricin N-acetyltransferase (PAT) protein of Streptomyces is also expressed, which confers tolerance to glufosinate to plants. Dual-trait corn has the following advantages: 1) the ability to apply glyphosate-containing agricultural herbicides to corn crops for broad-spectrum weed control; 2) glufosinate-tolerant traits in combination with glufosinate herbicides (with grass) Glyphosate herbicide mixed or alternately used as a Non-selective means for efficient management of glyphosate-resistant weeds; 3) Herbicide-tolerant transgenic maize as non-anti-insect transgenic maize, planted in proportion to transgenic insect-resistant maize, can delay insect/pest generation Resistance; 4) Corn yield did not decrease. In addition, genes encoding glyphosate tolerance and glufosinate tolerance traits are linked to the same DNA segment and are present at a single locus in the genome of the transgenic maize event DBN9888, which provides enhanced breeding efficiency and Molecular markers are enabled to track transgenic inserts in the breeding population and its progeny. In the detection method of the present invention, SEQ ID NO: 1 or its complement, SEQ ID NO: 2 or its complement, SEQ ID NO: 6 or its complement, or SEQ ID NO: 7 or its complement may be used as DNA primers. Or probes to generate amplification products that are diagnosed as transgenic maize event DBN9888 or its progeny, and the presence of plant material derived from the transgenic maize event DBN9888 can be identified quickly, accurately, and stably.
序列简述Sequence description
SEQ ID NO:1  转基因玉米事件DBN9888中5’转基因片段的插入位点和玉米基因组DNA的每一侧的11个核苷酸;SEQ ID NO: 1 insertion site of the 5' transgene fragment in transgenic maize event DBN9888 and 11 nucleotides on each side of maize genomic DNA;
SEQ ID NO:2  转基因玉米事件DBN9888中3’转基因片段的插入位点和玉米基因组DNA的每一侧的11个核苷酸;SEQ ID NO: 2 insertion site of the 3' transgene fragment in the transgenic maize event DBN9888 and 11 nucleotides on each side of the maize genomic DNA;
SEQ ID NO:3  转基因玉米事件DBN9888中在插入序列的5’末端位于插入接合部位附近的一个长度为960个核苷酸的序列;SEQ ID NO: 3 A sequence of 960 nucleotides in length in the transgenic maize event DBN9888 located at the 5' end of the inserted sequence near the insertion junction;
SEQ ID NO:4  转基因玉米事件DBN9888中在插入序列的3’末端位于插入接合部位附近的一个长度为753个核苷酸的序列;SEQ ID NO: 4 A sequence of 753 nucleotides in length in the transgenic maize event DBN9888 located at the 3' end of the inserted sequence near the insertion junction;
SEQ ID NO:5  整个T-DNA序列、5’和3’的侧翼玉米基因组序列;SEQ ID NO: 5 The entire T-DNA sequence, the 5' and 3' flanking maize genomic sequences;
SEQ ID NO:6  位于SEQ ID NO:3内部的序列,跨越了DBN10006构建体DNA序列和pr35S启动子序列;SEQ ID NO: 6 is a sequence internal to SEQ ID NO: 3 spanning the DBN10006 construct DNA sequence and the pr35S promoter sequence;
SEQ ID NO:7  位于SEQ ID NO:4内部的序列,跨越了tNos终止子序列和DBN10006构建体DNA序列;SEQ ID NO:7 is a sequence located within SEQ ID NO: 4 spanning the tNos terminator sequence and the DBN10006 construct DNA sequence;
SEQ ID NO:8  扩增SEQ ID NO:3的第一引物;SEQ ID NO: 8 amplifies the first primer of SEQ ID NO: 3;
SEQ ID NO:9  扩增SEQ ID NO:3的第二引物;SEQ ID NO: 9 amplifies the second primer of SEQ ID NO: 3;
SEQ ID NO:10  扩增SEQ ID NO:4的第一引物;SEQ ID NO: 10 amplifies the first primer of SEQ ID NO: 4;
SEQ ID NO:11  扩增SEQ ID NO:4的第二引物;SEQ ID NO: 11 Amplification of the second primer of SEQ ID NO: 4;
SEQ ID NO:12  5’侧翼基因组序列上的引物; SEQ ID NO: 12 Primer on the 5' flanking genomic sequence;
SEQ ID NO:13  与SEQ ID NO:12配对的位于T-DNA上的引物;SEQ ID NO: 13 is a primer paired with SEQ ID NO: 12 on the T-DNA;
SEQ ID NO:14  3’侧翼基因组序列上的引物,其与SEQ ID NO:12配对可以检测转基因是纯合子或是杂合子;SEQ ID NO: 14 a primer on the 3' flanking genomic sequence, which paired with SEQ ID NO: 12 can detect whether the transgene is homozygous or heterozygous;
SEQ ID NO:15  与SEQ ID NO:14配对的位于T-DNA上的引物;SEQ ID NO: 15 is a primer paired with SEQ ID NO: 14 on the T-DNA;
SEQ ID NO:16  Taqman检测EPSPS的引物1;SEQ ID NO: 16 Taqman detects primer 1 of EPSPS;
SEQ ID NO:17  Taqman检测EPSPS的引物2;SEQ ID NO: 17 Taqman detects primer 2 of EPSPS;
SEQ ID NO:18  Taqman检测EPSPS的探针1;SEQ ID NO: 18 Taqman probe 1 for detecting EPSPS;
SEQ ID NO:19  Taqman检测PAT的引物3;SEQ ID NO: 19 Taqman detects primer 3 of PAT;
SEQ ID NO:20  Taqman检测PAT的引物4;SEQ ID NO: 20 Taqman detects primer 4 of PAT;
SEQ ID NO:21  Taqman检测PAT的探针2;SEQ ID NO: 21 Taqman probe 2 for detecting PAT;
SEQ ID NO:22  玉米内源基因Ubiquitin泛素蛋白的第一引物;SEQ ID NO: 22 First primer for maize endogenous gene Ubiquitin ubiquitin protein;
SEQ ID NO:23  玉米内源基因Ubiquitin泛素蛋白的第二引物;SEQ ID NO: 23 second primer for maize endogenous gene Ubiquitin ubiquitin protein;
SEQ ID NO:24  Southern印迹杂交检测中PAT的探针;SEQ ID NO: 24 probe for PAT in Southern blot hybridization assay;
SEQ ID NO:25  Southern印迹杂交检测中EPSPS的探针;SEQ ID NO: 25 probe for EPSPS in Southern blot hybridization assay;
SEQ ID NO:26  位于T-DNA上的引物,与SEQ ID NO:13方向一致;SEQ ID NO:26 Primer on T-DNA, in the same orientation as SEQ ID NO:13;
SEQ ID NO:27  位于T-DNA上的引物,与SEQ ID NO:13方向相反,用作获得侧翼序列;SEQ ID NO:27 Primer on T-DNA, opposite to SEQ ID NO: 13 for use as a flanking sequence;
SEQ ID NO:28  位于T-DNA上的引物,与SEQ ID NO:13方向相反,用作获得侧翼序列;SEQ ID NO:28 Primer on T-DNA, opposite to SEQ ID NO: 13 for use as a flanking sequence;
SEQ ID NO:29  位于T-DNA上的引物,与SEQ ID NO:15方向一致;SEQ ID NO:29 Primer on T-DNA, aligned with SEQ ID NO:15;
SEQ ID NO:30  位于T-DNA上的引物,与SEQ ID NO:15方向相反,用作获得侧翼序列;SEQ ID NO:30 Primer on T-DNA, opposite to SEQ ID NO: 15 for use as a flanking sequence;
SEQ ID NO:31  位于T-DNA上的引物,与SEQ ID NO:15方向相反,用作获得侧翼序列。SEQ ID NO: 31 Primer on T-DNA, opposite to SEQ ID NO: 15, used to obtain flanking sequences.
下面通过附图和实施例,对本发明的技术方案做进一步的详细描述。The technical solution of the present invention will be further described in detail below through the accompanying drawings and embodiments.
附图说明DRAWINGS
图1为本发明用于检测除草剂耐受性玉米植物DBN9888的核酸序列及其检测方法的转基因插入序列与玉米基因组接合部位的结构示意图; 1 is a schematic view showing the structure of a transgenic insert sequence for detecting a nucleic acid sequence of a herbicide-tolerant maize plant DBN9888 and a method for detecting the same;
图2为本发明用于检测除草剂耐受性玉米植物DBN9888的核酸序列及其检测方法的重组表达载体DBN10006的结构示意图。2 is a schematic view showing the structure of a recombinant expression vector DBN10006 for detecting a nucleic acid sequence of a herbicide-tolerant corn plant DBN9888 and a detection method thereof.
具体实施方式detailed description
下面通过具体实施例进一步说明本发明用于检测除草剂耐受性玉米植物DBN9888的核酸序列及其检测方法的技术方案。The technical scheme of the present invention for detecting the nucleic acid sequence of the herbicide-tolerant maize plant DBN9888 and the detection method thereof will be further illustrated by specific examples.
第一实施例、克隆与转化First embodiment, cloning and transformation
1.1、载体克隆1.1, vector cloning
使用标准的基因克隆技术构建重组表达载体DBN10006(如图2所示)。所述载体DBN10006包含两个串联的转基因表达盒,第一个表达盒由含有增强子区域的串联重复的花椰菜花叶病毒35S启动子(pr35S),可操作地连接到链霉菌的草铵膦耐受性的膦丝菌素N-乙酰基转移酶(cPAT)上,并可操作地连接到花椰菜花叶病毒35S终止子(t35S)上而组成;第二个表达盒由水稻肌动蛋白1启动子(prOsAct1),可操作连接到拟南芥EPSPS叶绿体转运肽的编码序列(spAtCTP2)上,可操作连接到土壤杆菌属CP4菌株的草甘膦耐受性的5-烯醇-丙酮酰莽草酸-3-磷酸合酶(cEPSPS)上,可操作连接到胭脂碱合酶的转录终止子(tNos)上而组成。The recombinant expression vector DBN10006 (shown in Figure 2) was constructed using standard gene cloning techniques. The vector DBN10006 comprises two tandem transgenic expression cassettes, the first expression cassette being ligated to the streptomyces glufosinate by a tandem repeat of the cauliflower mosaic virus 35S promoter (pr35S) containing an enhancer region Receptive phosphinothricin N-acetyltransferase (cPAT), operably linked to the cauliflower mosaic virus 35S terminator (t35S); the second expression cassette is initiated by rice actin 1 a (gOsAct1), operably linked to the Arabidopsis EPSPS chloroplast transit peptide coding sequence (spAtCTP2), operably linked to the Agrobacterium CP4 strain of glyphosate-tolerant 5-enol-pyruvylshikimate The -3-phosphate synthase (cEPSPS) is operably linked to the transcription terminator (tNos) of the nopaline synthase.
将所述载体DBN10006用液氮法转化到农杆菌LBA4404(Invitrgen,Chicago,USA;Cat.No:18313-015)中,并且以5-烯醇丙酮酰莽草酸-3-磷酸合酶(EPSPS)为选择标记对转化细胞进行筛选。The vector DBN10006 was transformed into Agrobacterium LBA4404 (Invitrgen, Chicago, USA; Cat. No: 18313-015) by liquid nitrogen method, and 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) was used. Transformed cells are screened for selection markers.
1.2、植物转化1.2, plant transformation
采用常规的农杆菌侵染法进行转化,将无菌培养的玉米幼胚与本实施例1.1中所述的农杆菌共培养,以将构建的重组表达载体DBN10006中的T-DNA转入到玉米染色体组中,以产生转基因玉米事件DBN9888。Transformation was carried out by a conventional Agrobacterium infection method, and the sterile cultured maize immature embryos were co-cultured with the Agrobacterium described in the present Example 1.1 to transfer the T-DNA in the constructed recombinant expression vector DBN10006 to the corn. In the genome, to generate the transgenic maize event DBN9888.
对于农杆菌介导的玉米转化,简要地,从玉米中分离未成熟的幼胚,用农杆菌悬浮液接触幼胚,其中农杆菌能够将EPSPS基因的核苷酸序列和PAT基因的核苷酸序列传递至幼胚之一的至少一个细胞(步骤1:侵染步骤),在此步骤中,幼胚优选地浸入农杆菌悬浮液(OD660=0.4-0.6,侵染培养基(MS盐4.3g/L、MS维他命、干酪素300mg/L、蔗糖68.5g/L、葡萄糖36g/L、乙酰 丁香酮(AS)40mg/L、2,4-二氯苯氧乙酸(2,4-D)1mg/L,pH 5.3))中以启动接种。幼胚与农杆菌共培养一段时期(3天)(步骤2:共培养步骤)。优选地,幼胚在侵染步骤后在固体培养基(MS盐4.3g/L、MS维他命、干酪素300mg/L、蔗糖20g/L、葡萄糖10g/L、乙酰丁香酮(AS)100mg/L、2,4-二氯苯氧乙酸(2,4-D)1mg/L、琼脂8g/L,pH 5.8)上培养。在此共培养阶段后,可以有一个选择性的“恢复”步骤。在“恢复”步骤中,恢复培养基(MS盐4.3g/L、MS维他命、干酪素300mg/L、蔗糖30g/L、2,4-二氯苯氧乙酸(2,4-D)1mg/L、植物凝胶3g/L,pH 5.8)中至少存在一种己知抑制农杆菌生长的抗生素(头孢霉素),不添加植物转化体的选择剂(步骤3:恢复步骤)。优选地,幼胚在有抗生素但没有选择剂的固体培养基上培养,以消除农杆菌并为侵染细胞提供恢复期。接着,接种的幼胚在含选择剂(草甘膦)的培养基上培养并选择生长着的转化愈伤组织(步骤4:选择步骤)。优选地,幼胚在有选择剂的筛选固体培养基(MS盐4.3g/L、MS维他命、干酪素300mg/L、蔗糖30g/L、N-(膦羧甲基)甘氨酸0.25mol/L、2,4-二氯苯氧乙酸(2,4-D)1mg/L、植物凝胶3g/L,pH 5.8)上培养,导致转化的细胞选择性生长。然后,愈伤组织再生成植物(步骤5:再生步骤),优选地,在含选择剂的培养基上生长的愈伤组织在固体培养基(MS分化培养基和MS生根培养基)上培养以再生植物。For Agrobacterium-mediated transformation of maize, briefly, immature immature embryos are isolated from maize, and the immature embryos are contacted with Agrobacterium suspension, wherein Agrobacterium can express the nucleotide sequence of EPSPS gene and the nucleotide of PAT gene. The sequence is passed to at least one cell of one of the young embryos (step 1: infection step), in which the immature embryo is preferably immersed in an Agrobacterium suspension (OD 660 = 0.4-0.6, infecting medium (MS salt 4.3) g/L, MS vitamin, casein 300mg/L, sucrose 68.5g/L, glucose 36g/L, acetosyringone (AS) 40mg/L, 2,4-dichlorophenoxyacetic acid (2,4-D) Inoculation was initiated with 1 mg/L, pH 5.3)). The immature embryo is co-cultured with Agrobacterium for a period of time (3 days) (step 2: co-cultivation step). Preferably, the immature embryo is in solid medium after the infection step (MS salt 4.3 g/L, MS vitamin, casein 300 mg/L, sucrose 20 g/L, glucose 10 g/L, acetosyringone (AS) 100 mg/L) 2,4-Dichlorophenoxyacetic acid (2,4-D) 1 mg/L, agar 8 g/L, pH 5.8). After this co-cultivation phase, there can be an optional "recovery" step. In the "recovery" step, the medium was restored (MS salt 4.3 g / L, MS vitamin, casein 300 mg / L, sucrose 30 g / L, 2,4-dichlorophenoxyacetic acid (2,4-D) 1 mg / At least one antibiotic (cephalosporin) known to inhibit the growth of Agrobacterium is present in L, plant gel 3 g/L, pH 5.8), and no selection agent for plant transformants is added (step 3: recovery step). Preferably, the immature embryos are cultured on a solid medium with antibiotics but no selection agent to eliminate Agrobacterium and provide a recovery period for the infected cells. Next, the inoculated immature embryos are cultured on a medium containing a selective agent (glyphosate) and the grown transformed callus is selected (step 4: selection step). Preferably, the immature embryo is screened in a solid medium with a selective agent (MS salt 4.3 g/L, MS vitamin, casein 300 mg/L, sucrose 30 g/L, N-(phosphocarboxymethyl)glycine 0.25 mol/L, 2,4-Dichlorophenoxyacetic acid (2,4-D) 1 mg/L, plant gel 3 g/L, pH 5.8) was cultured, resulting in selective growth of transformed cells. Then, the callus regenerates the plant (step 5: regeneration step), preferably, the callus grown on the medium containing the selection agent is cultured on a solid medium (MS differentiation medium and MS rooting medium) Recycled plants.
筛选得到的抗性愈伤组织转移到所述MS分化培养基(MS盐4.3g/L、MS维他命、干酪素300mg/L、蔗糖30g/L、6-苄基腺嘌呤2mg/L、N-(膦羧甲基)甘氨酸0.125mol/L、植物凝胶3g/L,pH 5.8)上,25℃下培养分化。分化出来的小苗转移到所述MS生根培养基(MS盐2.15g/L、MS维他命、干酪素300mg/L、蔗糖30g/L、吲哚-3-乙酸1mg/L、琼脂8g/L,pH 5.8)上,25℃下培养至约10cm高,移至温室培养至结实。在温室中,每天于28℃下培养16小时,再于20℃下培养8小时。The selected resistant callus was transferred to the MS differentiation medium (MS salt 4.3 g/L, MS vitamin, casein 300 mg/L, sucrose 30 g/L, 6-benzyl adenine 2 mg/L, N- (phosphonocarboxymethyl)glycine 0.125 mol/L, plant gel 3 g/L, pH 5.8), cultured and differentiated at 25 °C. The differentiated seedlings were transferred to the MS rooting medium (MS salt 2.15 g/L, MS vitamin, casein 300 mg/L, sucrose 30 g/L, indole-3-acetic acid 1 mg/L, agar 8 g/L, pH 5.8), culture at 25 ° C to a height of about 10 cm, and move to a greenhouse to grow to firmness. In the greenhouse, the cells were cultured at 28 ° C for 16 hours and then at 20 ° C for 8 hours.
1.3、转基因事件的鉴定和筛选1.3. Identification and screening of transgenic events
一共产生了332个独立转基因T0植株。A total of 332 independent transgenic T 0 plants were produced.
通过TaqManTM分析(参见第二实施例)检测再生的转基因玉米植株是否存在EPSPS和PAT基因,并表征耐受草甘膦和草铵膦品系的拷贝数。通过筛选,选定了事件DBN9888是优异的,其具有单拷贝转基因、良好的草甘膦除 草剂耐受性、草铵膦除草剂耐受性和农艺性状的表现(参见第五实施例)。The regenerated transgenic maize plants were tested for the presence of EPSPS and PAT genes by TaqMan (TM) analysis (see second example) and characterize the copy number of the glyphosate-tolerant and glufosinate-tolerant lines. By screening, event DBN9888 was selected to be excellent with single copy transgene, good glyphosate herbicide tolerance, glufosinate herbicide tolerance and agronomic traits (see fifth example).
第二实施例、用TaqMan进行转基因玉米事件DBN9888检测Second embodiment, detection of transgenic corn event DBN9888 using TaqMan
取转基因玉米事件DBN9888的叶片约100mg作为样品,用Qiagen的DNeasy Plant Maxi Kit提取其基因组DNA,通过Taqman探针荧光定量PCR方法检测EPSPS基因和PAT基因的拷贝数。同时以野生型玉米植株作为对照,按照上述方法进行检测分析。实验设3次重复,取平均值。Approximately 100 mg of the leaves of the transgenic maize event DBN9888 were taken as samples, and the genomic DNA was extracted with Qiagen's DNeasy Plant Maxi Kit, and the copy number of the EPSPS gene and the PAT gene was detected by Taqman probe fluorescent quantitative PCR. At the same time, the wild type corn plants were used as a control, and the detection and analysis were carried out according to the above method. The experiment was set to repeat 3 times and averaged.
具体方法如下:The specific method is as follows:
步骤11、取转基因玉米事件DBN9888的叶片100mg,在研钵中用液氮研成匀浆,每个样品取3个重复;Step 11. Take 100 mg of the leaves of the transgenic corn event DBN9888, and homogenize it with liquid nitrogen in a mortar, and take 3 replicates for each sample;
步骤12、使用Qiagen的DNeasy Plant Mini Kit提取上述样品的基因组DNA,具体方法参考其产品说明书;Step 12. Extract the genomic DNA of the above sample using Qiagen's DNeasy Plant Mini Kit, and refer to the product manual for the specific method;
步骤13、用NanoDrop 2000(Thermo Scientific)测定上述样品的基因组DNA浓度;Step 13. Determine the genomic DNA concentration of the above sample using NanoDrop 2000 (Thermo Scientific);
步骤14、调整上述样品的基因组DNA浓度至同一浓度值,所述浓度值的范围为80-100ng/μl;Step 14, adjusting the genomic DNA concentration of the above sample to the same concentration value, the concentration value ranges from 80 to 100 ng / μl;
步骤15、采用Taqman探针荧光定量PCR方法鉴定样品的拷贝数,以经过鉴定已知拷贝数的样品作为标准品,以野生型玉米植株的样品作为对照,每个样品3个重复,取其平均值;荧光定量PCR引物和探针序列分别是:Step 15. The Taqman probe real-time PCR method is used to identify the copy number of the sample, and the sample with the known copy number is used as a standard, and the sample of the wild type corn plant is used as a control, and each sample has 3 replicates, and the average is taken. Value; the fluorescent PCR primers and probe sequences are:
以下引物和探针用来检测EPSPS基因序列:The following primers and probes were used to detect the EPSPS gene sequence:
引物1:CTGGAAGGCGAGGACGTCATCAATA如序列表中SEQ ID NO:16所示;Primer 1: CTGGAAGGCGAGGACGTCATCAATA is shown in SEQ ID NO: 16 in the Sequence Listing;
引物2:TGGCGGCATTGCCGAAATCGAG如序列表中SEQ ID NO:17所示;Primer 2: TGGCGGCATTGCCGAAATCGAG is shown in SEQ ID NO: 17 in the Sequence Listing;
探针1:ATGCAGGCGATGGGCGCCCGCATCCGTA如序列表中SEQ ID NO:18所示;Probe 1: ATGCAGGCGATGGGCGCCCGCATCCGTA as shown in SEQ ID NO: 18 in the Sequence Listing;
以下引物和探针用来检测PAT基因序列:The following primers and probes were used to detect the PAT gene sequence:
引物3:CAGTTGAGATTAGGCCAGCTACAG如序列表中SEQ ID NO:19所示;Primer 3: CAGTTGAGATTAGGCCAGCTACAG is shown in SEQ ID NO: 19 in the Sequence Listing;
引物4:TTCACTGTAGACGTCTCAATGTAATGG如序列表中SEQ ID  NO:20所示;Primer 4: TACTACTGTAGACGTCTCAATGTAATGG as SEQ ID in the Sequence Listing NO: 20;
探针2:CAGCTGATATGGCCGCGGTTTGTG如序列表中SEQ ID NO:21所示;Probe 2: CAGCTGATATGGCCGCGGTTTGTG is shown in SEQ ID NO: 21 in the Sequence Listing;
PCR反应体系为:The PCR reaction system is:
Figure PCTCN2016080677-appb-000003
Figure PCTCN2016080677-appb-000003
所述50×引物/探针混合物包含1mM浓度的每种引物各45μL,100μM浓度的探针50μL和860μlL1×TE缓冲液,并且在4℃,贮藏在琥珀试管中。The 50× primer/probe mixture contained 45 μL of each primer at a concentration of 1 mM, 50 μL of probe at a concentration of 100 μM and 860 μl of L1×TE buffer, and stored at 4° C. in an amber tube.
PCR反应条件为:The PCR reaction conditions are:
Figure PCTCN2016080677-appb-000004
Figure PCTCN2016080677-appb-000004
利用SDS2.3软件(Applied Biosystems)分析数据,获得单拷贝的转基因玉米事件DBN9888。Data were analyzed using SDS2.3 software (Applied Biosystems) to obtain a single copy of the transgenic maize event DBN9888.
第三实施例、转基因玉米事件DBN9888检测Third embodiment, detection of genetically modified corn event DBN9888
3.1、基因组DNA提取3.1, genomic DNA extraction
DNA提取按照常规采用的CTAB(十六烷基三甲基溴化铵)法:取2克幼嫩的转基因玉米事件DBN9888的叶片在液氮中研磨成粉后,加入0.5mL于温度65℃预热的DNA提取CTAB Buffer(20g/L CTAB,1.4M NaCl,100mM Tris-HCl,20mM EDTA(乙二胺四乙酸),用NaOH调pH至8.0),充分混匀后,于温度65℃抽提90分钟;加入0.5倍体积苯酚,0.5倍体积氯仿,颠倒混匀;12000rpm(每分钟转数)转速下离心10分钟;吸取上清液,加入2倍体积无水乙醇,轻柔晃动离心管,于温度4℃静置30分钟;12000rpm转速下再离心10分钟;收集DNA到管底;弃上清液,用1mL质量浓度为70%的乙醇,洗涤沉淀;12000rpm转速下离心5分钟;真空抽干或在超净台吹干; DNA沉淀溶解于适量的TE缓冲液(10mM Tris-HCl,1mM EDTA,pH 8.0)中,保存在温度-20℃条件下。DNA extraction according to the conventionally used CTAB (cetyltrimethylammonium bromide) method: take 2 grams of young transgenic corn event DBN9888 leaves were ground into powder in liquid nitrogen, add 0.5mL at a temperature of 65 ° C pre Hot DNA extraction CTAB Buffer (20g/L CTAB, 1.4M NaCl, 100mM Tris-HCl, 20mM EDTA (ethylenediaminetetraacetic acid), adjusted to pH 8.0 with NaOH), fully mixed, and extracted at a temperature of 65 ° C 90 minutes; add 0.5 volume of phenol, 0.5 volume of chloroform, invert and mix; centrifuge at 102000 rpm (revolutions per minute) for 10 minutes; aspirate the supernatant, add 2 volumes of absolute ethanol, gently shake the centrifuge tube, The temperature was allowed to stand at 4 ° C for 30 minutes; the temperature was further centrifuged at 12,000 rpm for 10 minutes; the DNA was collected to the bottom of the tube; the supernatant was discarded, and the precipitate was washed with 1 mL of 70% ethanol; centrifuged at 12,000 rpm for 5 minutes; vacuum dried Or blow dry on a clean bench; The DNA pellet was dissolved in an appropriate amount of TE buffer (10 mM Tris-HCl, 1 mM EDTA, pH 8.0) and stored at a temperature of -20 °C.
3.2、侧翼DNA序列的分析3.2. Analysis of flanking DNA sequences
对上述提取的DNA样品进行浓度测定,使待测样品的浓度位于80-100ng/μL之间。用选择出的限制性内切酶BamH I、Xma I、Kpn I、Sac II(5’端分析)和Spe I、Pst I、Eco57 I(3’端分析)分别酶切基因组DNA。每个酶切体系中加入26.5μL基因组DNA、0.5μL上述选择出的限制性内切酶、以及3μL酶切缓冲液,酶切1小时。待酶切结束后,向酶切体系中加入70μL无水乙醇,冰浴30分钟,转速12000rpm离心7分钟,弃上清,吹干,之后加入8.5μL双蒸水(dd H2O)、1μL 10X T4Buffer以及0.5μL T4连接酶在温度4℃连接过夜。用一系列嵌套引物进行PCR扩增分离5’和3’转基因/基因组DNA。具体的,分离5’转基因/基因组DNA引物组合包括SEQ ID NO:13、SEQ ID NO:26作为第一引物,SEQ ID NO:27、SEQ ID NO:28作为第二引物,SEQ ID NO:13作为测序引物。分离3’转基因/基因组DNA引物组合包括SEQ ID NO:15、SEQ ID NO:29作为第一引物,SEQ ID NO:30、SEQ ID NO:31作为第二引物,SEQ ID NO:15作为测序引物,PCR反应条件如表3所示。The extracted DNA sample is subjected to concentration measurement such that the concentration of the sample to be tested is between 80 and 100 ng/μL. Genomic DNA was digested with the selected restriction enzymes BamH I, Xma I, Kpn I, Sac II (5' end analysis) and Spe I, Pst I, Eco57 I (3' end analysis), respectively. 26.5 μL of genomic DNA, 0.5 μL of the above-selected restriction enzyme, and 3 μL of the restriction enzyme buffer were added to each digestion system, and the enzyme was digested for 1 hour. After the end of the digestion, 70 μL of absolute ethanol was added to the digestion system, and the mixture was ice-bathed for 30 minutes, centrifuged at 12,000 rpm for 7 minutes, the supernatant was discarded, and dried, and then 8.5 μL of double distilled water (dd H 2 O) and 1 μL were added. 10X T 4 Buffer and 0.5 μL of T 4 ligase were ligated overnight at 4 °C. The 5' and 3' transgene/genomic DNA were isolated by PCR amplification using a series of nested primers. Specifically, the isolated 5' transgene/genomic DNA primer combination comprises SEQ ID NO: 13, SEQ ID NO: 26 as a first primer, SEQ ID NO: 27, SEQ ID NO: 28 as a second primer, SEQ ID NO: 13. As a sequencing primer. The isolated 3' transgene/genomic DNA primer combination comprises SEQ ID NO: 15, SEQ ID NO: 29 as the first primer, SEQ ID NO: 30, SEQ ID NO: 31 as the second primer, and SEQ ID NO: 15 as the sequencing primer The PCR reaction conditions are shown in Table 3.
所获得的扩增子在2.0%琼脂糖凝胶上电泳以分离PCR反应物,随后使用QIAquick Gel提取试剂盒(目录#_28704,Qiagen Inc.,Valencia,CA)从琼脂糖基质分离目的片段。然后对纯化的PCR产物测序(例如,ABI PrismTM 377,PE Biosystems,Foster City,CA)并分析(例如,DNASTAR序列分析软件,DNASTAR Inc.,Madison,WI)。The obtained amplicons were electrophoresed on a 2.0% agarose gel to separate PCR reactions, followed by separation of the fragment of interest from the agarose matrix using a QIAquick Gel extraction kit (catalog #_28704, Qiagen Inc., Valencia, CA). The purified PCR product is then sequenced (eg, ABI PrismTM 377, PE Biosystems, Foster City, CA) and analyzed (eg, DNASTAR sequence analysis software, DNASTAR Inc., Madison, WI).
使用标准PCR方法确认5’和3’侧翼序列和接点序列。5’侧翼序列和接点序列可使用SEQ ID NO:8或SEQ ID NO:12,组合SEQ ID NO:9、SEQ ID NO:13或SEQ ID NO:26来确认。3’侧翼序列和接点序列可使用SEQ ID NO:11或SEQ ID NO:14,组合SEQ ID NO:10、SEQ ID NO:15或SEQ ID NO:29来确认。PCR反应体系和扩增条件如表2和表3所示。本领域技术人员将理解,其他引物序列也可用于确认侧翼序列和接点序列。The 5' and 3' flanking sequences and junction sequences were confirmed using standard PCR methods. The 5' flanking sequence and the contact sequence can be confirmed using SEQ ID NO: 8 or SEQ ID NO: 12 in combination with SEQ ID NO: 9, SEQ ID NO: 13, or SEQ ID NO: 26. The 3' flanking sequence and the contact sequence can be confirmed using SEQ ID NO: 11 or SEQ ID NO: 14, in combination with SEQ ID NO: 10, SEQ ID NO: 15 or SEQ ID NO: 29. The PCR reaction system and amplification conditions are shown in Tables 2 and 3. Those skilled in the art will appreciate that other primer sequences can also be used to confirm flanking sequences and junction sequences.
PCR产物的DNA测序提供了可以用于设计其他DNA分子的DNA,所述其他DNA分子作为引物和探针用于来源于转基因玉米事件DBN9888的玉米 植物或种子的鉴定。DNA sequencing of PCR products provides DNA that can be used to design other DNA molecules for use as primers and probes for maize derived from the transgenic maize event DBN9888 Identification of plants or seeds.
发现在SEQ ID NO:5的核苷酸1-693位显示的为玉米基因组序列在转基因玉米事件DBN9888插入序列的右边界侧翼(5’侧翼序列),在SEQ ID NO:5的核苷酸5472-5952位显示的为玉米基因组序列在转基因玉米事件DBN9888插入序列的左边界侧翼(3’侧翼序列)。5’接合序列在SEQ ID NO:1中列出,3’接合序列在SEQ ID NO:2中列出。It was found that the maize genomic sequence at position 1-693 of SEQ ID NO: 5 is flanking the right border of the transgenic maize event DBN9888 insert (5' flanking sequence), at nucleotide 5472 of SEQ ID NO: 5. The -5952 position shows the maize genome sequence flanking the left border of the transgenic maize event DBN9888 insertion sequence (3' flanking sequence). The 5' junction sequence is set forth in SEQ ID NO: 1, and the 3' junction sequence is set forth in SEQ ID NO: 2.
3.3、PCR接合性测定3.3, PCR zygosity determination
接合序列是相对短的多核苷酸分子,其是新的DNA序列,当在多核酸检测分析中检测到时对于转基因玉米事件DBN9888的DNA是诊断性的。SEQ ID NO:1和SEQ ID NO:2中的接合序列为转基因玉米事件DBN9888中转基因片段的插入位点和玉米基因组DNA的每一侧的11个多核苷酸。更长或更短的多核苷酸接合序列可以从SEQ ID NO:3或SEQ ID NO:4中选择。接合序列(5’连接区域SEQ ID NO:1,和3’连接区域SEQ ID NO:2)作为DNA探针或作为DNA引物分子在DNA检测方法中是有用的。接合序列SEQ ID NO:6和SEQ ID NO:7也是转基因玉米事件DBN9888中新的DNA序列,其也可以作为DNA探针或作为DNA引物分子检测转基因玉米事件DBN9888DNA的存在。所述SEQ ID NO:6(SEQ ID NO:3的核苷酸第694-960位)跨越了DBN10006构建体DNA序列和pr35S启动子序列,所述SEQ ID NO:7(SEQ ID NO:4的核苷酸第1-272位)跨越了tNos终止子序列和DBN10006构建体DNA序列。The junction sequence is a relatively short polynucleotide molecule that is a new DNA sequence that is diagnostic for the DNA of the transgenic maize event DBN9888 when detected in a polynucleic acid detection assay. The junction sequence in SEQ ID NO: 1 and SEQ ID NO: 2 is the insertion site of the transgene fragment in the transgenic maize event DBN9888 and 11 polynucleotides on each side of the maize genomic DNA. Longer or shorter polynucleotide junction sequences can be selected from SEQ ID NO: 3 or SEQ ID NO: 4. The junction sequence (5' junction region SEQ ID NO: 1, and 3' junction region SEQ ID NO: 2) is useful as a DNA probe or as a DNA primer molecule in a DNA detection method. The ligating sequences SEQ ID NO: 6 and SEQ ID NO: 7 are also novel DNA sequences in transgenic maize event DBN9888, which can also be used as DNA probes or as DNA primer molecules to detect the presence of transgenic maize event DBN9888 DNA. The SEQ ID NO: 6 (positions 694-960 of the nucleotide of SEQ ID NO: 3) spans the DBN10006 construct DNA sequence and the pr35S promoter sequence, SEQ ID NO: 7 (SEQ ID NO: 4) Nucleotide No. 1-272) spans the tNos terminator sequence and the DBN10006 construct DNA sequence.
此外,通过使用来自SEQ ID NO:3或SEQ ID NO:4的至少一个引物来产生扩增子,所述引物用于PCR方法中时产生转基因玉米事件DBN9888的诊断性扩增子。Furthermore, an amplicon is produced by using at least one primer from SEQ ID NO: 3 or SEQ ID NO: 4, which is used in a PCR method to generate a diagnostic amplicon of the transgenic maize event DBN9888.
具体地,从转基因插入序列的5’未端产生PCR产物,该PCR产物为包含来源于转基因玉米事件DBN9888的植物材料的基因组中侧翼于T-DNA插入序列的5’末端的基因组DNA的一部分。这个PCR产物包含SEQ ID NO:3。为了进行PCR扩增,设计与侧翼于转基因插入序列的5’末端的基因组DNA序列杂交的引物5(SEQ ID NO:8),和与之配对的位于转基因tNos终止子序列的引物6(SEQ ID NO:9)。Specifically, a PCR product was generated from the 5' end of the transgene insert, which is part of the genomic DNA flanked by the 5' end of the T-DNA insert in the genome of the plant material derived from the transgenic maize event DBN9888. This PCR product comprises SEQ ID NO:3. For PCR amplification, primer 5 (SEQ ID NO: 8), which hybridizes to the genomic DNA sequence flanking the 5' end of the transgene insert, and primer 6 (SEQ ID) located in the transgenic tNos terminator sequence were designed. NO: 9).
从转基因插入序列的3’未端产生PCR产物,该PCR产物包含来源于转 基因玉米事件DBN9888的植物材料的基因组中侧翼于T-DNA插入序列的3’末端的基因组DNA的一部分。这个PCR产物包含SEQ ID NO:4。为了进行PCR扩增,设计与侧翼于转基因插入序列的3’末端的基因组DNA序列杂交的引物8(SEQ ID NO:11),和与之配对的位于插入物的3’未端的pr35S启动子序列的引物7(SEQ ID NO:10)。A PCR product is produced from the 3' end of the transgene insertion sequence, the PCR product comprising the derived The genome of the plant material of the genetic maize event DBN9888 is flanked by a portion of the genomic DNA at the 3' end of the T-DNA insert. This PCR product comprises SEQ ID NO:4. For PCR amplification, primer 8 (SEQ ID NO: 11), which hybridizes to the genomic DNA sequence flanking the 3' end of the transgene insert, and the paired pr35S promoter sequence at the 3' end of the insert were designed. Primer 7 (SEQ ID NO: 10).
表2和表3中说明的DNA扩增条件可以用于上述PCR接合性试验以产生转基因玉米事件DBN9888的诊断性扩增子。扩增子的检测可以通过使用如表3所示的Stratagene Robocycler、MJ Engine、Perkin-Elmer 9700或Eppendorf Mastercycler Gradien热循环仪等进行,或通过本领域技术人员已知的方法和设备进行。The DNA amplification conditions illustrated in Tables 2 and 3 can be used in the PCR zygosity assay described above to generate a diagnostic amplicon of the transgenic maize event DBN9888. The detection of the amplicon can be carried out by using Stratagene Robocycler, MJ Engine, Perkin-Elmer 9700 or Eppendorf Mastercycler Gradien thermal cycler as shown in Table 3, or by methods and equipment known to those skilled in the art.
表2、用于转基因玉米事件DBN9888的5’转基因插入物/基因组接合区域鉴定的PCR步骤和反应混合物条件Table 2. PCR procedure and reaction mixture conditions for 5' transgene insert/genomic junction region identification of transgenic maize event DBN9888
Figure PCTCN2016080677-appb-000005
Figure PCTCN2016080677-appb-000005
Figure PCTCN2016080677-appb-000006
Figure PCTCN2016080677-appb-000006
表3、Perkin-Elmer9700热循环仪条件Table 3, Perkin-Elmer 9700 Thermal Cycler Conditions
Figure PCTCN2016080677-appb-000007
Figure PCTCN2016080677-appb-000007
轻轻地混合,如果热循环仪上没有保温帽,可以在每个反应液上方添加1-2滴矿物油。使用以上循环参数(表3)在Stratagene Robocycler(Stratagene,La Jolla,CA)、MJ Engine(MJ R-Biorad,Hercules,CA)、Perkin-Elmer 9700(Perkin Elmer,Boston,MA)或Eppendorf Mastercycler Gradient(Eppendorf,Hamburg,Germany)热循环仪上进行PCR。MJ Engine或Eppendorf MastercyclerGradient热循环仪应当在计算的模式下运行。Perkin-Elmer 9700热循环仪运行时要将变温速率(ramp speed)设定为最大值。 Mix gently. If there is no cap on the thermocycler, add 1-2 drops of mineral oil above each reaction. Using the above cycling parameters (Table 3) in Stratagene Robocycler (Stratagene, La Jolla, CA), MJ Engine (MJ R-Biorad, Hercules, CA), Perkin-Elmer 9700 (Perkin Elmer, Boston, MA) or Eppendorf Mastercycler Gradient ( PCR was performed on a thermocycler on Eppendorf, Hamburg, Germany. The MJ Engine or Eppendorf MastercyclerGradient thermal cycler should operate in the calculated mode. The Perkin-Elmer 9700 Thermal Cycler is programmed to set the ramp speed to its maximum value.
实验结果表明:引物5和6(SEQ ID NO:8和9),当其用在转基因玉米事件DBN9888基因组DNA的PCR反应中时,产生960bp片段的扩增产物,当其用在未转化玉米基因组DNA和非DBN9888玉米基因组DNA的PCR反应中时,没有片段被扩增;引物7和8(SEQ ID NO:10和11),当其用在转基因玉米事件DBN9888基因组DNA的PCR反应中时,产生753bp片段的扩增产物,当其用在未转化玉米基因组DNA和非DBN9888玉米基因组DNA的PCR反应中时,没有片段被扩增。The results of the experiments indicated that primers 5 and 6 (SEQ ID NOS: 8 and 9), when used in the PCR reaction of the transgenic maize event DBN9888 genomic DNA, produced an amplification product of the 960 bp fragment when used in the untransformed maize genome. When PCR was used in PCR reactions with non-DBN9888 maize genomic DNA, no fragments were amplified; primers 7 and 8 (SEQ ID NOS: 10 and 11) were generated when used in the PCR reaction of the transgenic maize event DBN9888 genomic DNA. The amplified product of the 753 bp fragment, when used in the PCR reaction of untransformed maize genomic DNA and non-DBN9888 maize genomic DNA, no fragments were amplified.
PCR接合性测定还可用于鉴定来源于转基因玉米事件DBN9888的材料是纯合子或是杂合子。将引物9(SEQ ID NO:12)、引物10(SEQ ID NO:13)和引物11(SEQ ID NO:14)用于扩增反应以产生转基因玉米事件DBN9888的诊断性扩增子。表4和表5中说明的DNA扩增条件可以用于上述接合性试验以产生转基因玉米事件DBN9888的诊断性扩增子。PCR zygosity assays can also be used to identify homozygous or heterozygous materials derived from the transgenic maize event DBN9888. Primer 9 (SEQ ID NO: 12), primer 10 (SEQ ID NO: 13) and primer 11 (SEQ ID NO: 14) were used in the amplification reaction to generate a diagnostic amplicon of the transgenic maize event DBN9888. The DNA amplification conditions illustrated in Tables 4 and 5 can be used in the zygosity assay described above to generate a diagnostic amplicon of the transgenic maize event DBN9888.
表4、接合性测定反应液Table 4, zygosity determination reaction solution
Figure PCTCN2016080677-appb-000008
Figure PCTCN2016080677-appb-000008
Figure PCTCN2016080677-appb-000009
Figure PCTCN2016080677-appb-000009
表5、接合性测定Perkin-Elmer9700热循环仪条件Table 5. Bondability Determination Perkin-Elmer 9700 Thermal Cycler Conditions
Figure PCTCN2016080677-appb-000010
Figure PCTCN2016080677-appb-000010
使用以上循环参数(表5)在Stratagene Robocycler(Stratagene,La Jolla,CA)、MJ Engine(MJ R-Biorad,Hercules,CA)、Perkin-Elmer 9700(Perkin Elmer,Boston,MA)或Eppendorf Mastercycler Gradient(Eppendorf,Hamburg,Germany)热循环仪上进行PCR。MJ Engine或Eppendorf Mastercycler Gradient热循环仪应当在计算的模式下运行。Perkin-Elmer 9700热循环仪运行时要将变温速率(ramp speed)设定为最大值。The above cycling parameters (Table 5) were used at Stratagene Robocycler (Stratagene, La Jolla, CA), MJ Engine (MJ R-Biorad, Hercules, CA), Perkin-Elmer 9700 (Perkin Elmer, Boston, MA) or Eppendorf Mastercycler Gradient ( PCR was performed on a thermocycler on Eppendorf, Hamburg, Germany. The MJ Engine or Eppendorf Mastercycler Gradient thermal cycler should operate in the calculated mode. The Perkin-Elmer 9700 Thermal Cycler is programmed to set the ramp speed to its maximum value.
在所述扩增反应中,含有模板DNA的生物样品含有诊断该样品中转基因玉米事件DBN9888的存在情况的DNA。或者反应将由含有来源于玉米基因组的DNA的生物样品产生两个不同的DNA扩增子,所述来源于玉米基因组的DNA相对于转基因玉米事件DBN9888中存在的插入DNA对应的等位基因是杂合的。这两个不同的扩增子将对应于来源于野生型玉米基因组基因座的第一扩增子和诊断转基因玉米事件DBN9888DNA的存在情况的第二扩增子。仅产 生对应于针对杂合基因组描述的第二扩增子的单个扩增子的玉米DNA样品,可诊断确定该样品中转基因玉米事件DBN9888的存在,且该样品由相对于转基因玉米植物DBN9888中存在的插入DNA对应的等位基因为纯合的玉米种子所产生。In the amplification reaction, the biological sample containing the template DNA contains DNA for diagnosing the presence of the transgenic maize event DBN9888 in the sample. Or the reaction will produce two different DNA amplicons from a biological sample containing DNA derived from the maize genome, which is heterozygous for the allele corresponding to the inserted DNA present in the transgenic maize event DBN9888. of. These two different amplicons will correspond to the first amplicon derived from the wild-type maize genomic locus and the second amplicon from the presence of the diagnostic transgenic maize event DBN9888 DNA. Produce only A maize DNA sample corresponding to a single amplicon of the second amplicon described for the hybrid genome can be diagnostically determined to determine the presence of the transgenic maize event DBN9888 in the sample, and the sample is present in relation to the transgenic maize plant DBN9888 The allele corresponding to the inserted DNA is produced by homozygous corn seed.
需要说明的是,转基因玉米事件DBN9888的引物对被用于产生对转基因玉米事件DBN9888基因组DNA为诊断性的扩增子。这些引物对包括但不限于,引物5和6(SEQ ID NO:8和9),和引物7和8(SEQ ID NO:10和11),用于所述的DNA扩增方法中。另外,用于扩增玉米内源基因的一个对照引物12和13(SEQ ID NO:22和23)被包括在内,作为反应条件的一个内在标准。对转基因玉米事件DBN9888的DNA抽提样品分析应该包括一个转基因玉米事件DBN9888的阳性组织DNA抽提物对照,一个来源于非转基因玉米事件DBN9888的阴性DNA抽提物对照和一个不含有模板玉米DNA抽提物的阴性对照。除了这些引物对之外,还可以使用来自SEQ ID NO:3或SEQ ID NO:4、或其互补序列的任何引物对,当它们被用于DNA扩增反应时分别产生对于来源于转基因事件玉米植物DBN9888的组织为诊断性的包含SEQ ID NO:1或SEQ ID NO:2的扩增子。表2-表5中说明的DNA扩增条件可以用于使用合适的引物对以产生转基因玉米事件DBN9888的诊断性扩增子。当在DNA扩增方法中测试时产生对转基因玉米事件DBN9888为诊断性的扩增子的、推定含有包含转基因玉米事件DBN9888的玉米植物或种子DNA的提取物,或来源于转基因玉米事件DBN9888的产物,可以被用作扩增的模板,来确定是否存在转基因玉米事件DBN9888。It should be noted that the primer pair of the transgenic maize event DBN9888 was used to generate a diagnostic amplicon for the transgenic maize event DBN9888 genomic DNA. These primer pairs include, but are not limited to, primers 5 and 6 (SEQ ID NOS: 8 and 9), and primers 7 and 8 (SEQ ID NOS: 10 and 11), which are used in the DNA amplification method described. In addition, one of the control primers 12 and 13 (SEQ ID NOS: 22 and 23) for amplifying the maize endogenous gene was included as an intrinsic standard for the reaction conditions. DNA extraction sample analysis for the transgenic maize event DBN9888 should include a positive tissue DNA extract control of the transgenic maize event DBN9888, a negative DNA extract control derived from the non-transgenic maize event DBN9888 and a DNA extraction without template DNA. Negative control of the extract. In addition to these primer pairs, any primer pair from SEQ ID NO: 3 or SEQ ID NO: 4, or its complement, can be used, which, when used in DNA amplification reactions, produces maize for transgenic events, respectively. The tissue of plant DBN9888 is a diagnostic amplicon comprising SEQ ID NO: 1 or SEQ ID NO: 2. The DNA amplification conditions illustrated in Table 2 - Table 5 can be used to generate a diagnostic amplicon of the transgenic maize event DBN9888 using a suitable primer pair. An extract derived from a maize plant or seed DNA containing the transgenic maize event DBN9888, or a product derived from the transgenic maize event DBN9888, when tested in a DNA amplification method, yielding a diagnostic amplicon for the transgenic maize event DBN9888 Can be used as a template for amplification to determine the presence of the transgenic maize event DBN9888.
第四实施例、通过Southern印迹杂交进行转基因玉米事件DBN9888检测Fourth Example, Detection of Transgenic Corn Event DBN9888 by Southern Blot Hybridization
4.1、用于Southern印迹杂交的DNA提取4.1, DNA extraction for Southern blot hybridization
利用T4、T5代纯合的转化事件进行Southern印迹分析。利用研钵和研杵,在液氮中研磨大约5到10g植物组织。在12.5mL提取缓冲液A(0.2M Tris pH 8.0,50mM EDTA,0.25M NaCl,0.1%v/vβ-疏基乙醇,2.5%w/v聚乙烯-吡咯烷酮)中重悬浮植物组织,以4000rpm离心10分钟(2755g)。弃掉上清液后,在2.5mL提取缓冲液B(0.2M Tris pH 8.0,50mM EDTA,0.5M NaCl,1%v/vβ-疏基乙醇,2.5%w/v聚乙烯-吡咯烷酮,3%肌氨酰,20%乙醇)中重 悬浮沉淀,并且在37℃温育30分钟。在温育期间,用无菌环混合样品一次。温育后,添加等体积的氯仿/异戊醇(24∶1),通过倒置轻轻混合,以4000rpm离心20分钟。收集含水层,并且在添加0.54体积异丙醇后以4000rpm离心5分钟以沉淀DNA。弃掉上清液,并且在500μLTE中重悬浮DNA沉淀。为了降解任何存在的RNA,在37℃,将DNA和1μL 30mg/mlLRNAase A温育30分钟,以4000rpm离心5分钟,并且在0.5体积7.5M醋酸铵和0.54体积异丙醇存在的情况下,通过以14000rpm离心10分钟沉淀DNA。弃掉上清液后,用500μL质量分数为70%的乙醇洗沉淀,并且使其干燥后在100μL TE缓冲液中重悬浮。Southern blot analysis was performed using T4, T5 generation homozygous transformation events. Approximately 5 to 10 g of plant tissue is ground in liquid nitrogen using a mortar and pestle. Resuspend plant tissue in 12.5 mL of Extraction Buffer A (0.2 M Tris pH 8.0, 50 mM EDTA, 0.25 M NaCl, 0.1% v/v β-mercaptoethanol, 2.5% w/v polyethylene-pyrrolidone), centrifuge at 4000 rpm 10 minutes (2755g). After discarding the supernatant, 2.5 mL of extraction buffer B (0.2 M Tris pH 8.0, 50 mM EDTA, 0.5 M NaCl, 1% v/v β-mercaptoethanol, 2.5% w/v polyethylene-pyrrolidone, 3%) Sarcoyl, 20% ethanol) medium weight The pellet was suspended and incubated at 37 ° C for 30 minutes. The samples were mixed once with a sterile loop during incubation. After the incubation, an equal volume of chloroform/isoamyl alcohol (24:1) was added, gently mixed by inversion, and centrifuged at 4000 rpm for 20 minutes. The aqueous layer was collected, and centrifuged at 4000 rpm for 5 minutes after the addition of 0.54 volumes of isopropyl alcohol to precipitate DNA. The supernatant was discarded and the DNA pellet was resuspended in 500 μL. To degrade any RNA present, the DNA was incubated with 1 μL of 30 mg/ml LRNAase A for 30 minutes at 37 ° C, centrifuged at 4000 rpm for 5 minutes, and passed in the presence of 0.5 volume of 7.5 M ammonium acetate and 0.54 volume of isopropanol. The DNA was precipitated by centrifugation at 14,000 rpm for 10 minutes. After discarding the supernatant, the precipitate was washed with 500 μL of 70% ethanol, and dried and resuspended in 100 μL of TE buffer.
4.2、限制酶消化4.2, restriction enzyme digestion
利用分光光度计或荧光计定量检测DNA浓度(利用1×TNE和Hoechst染料)。The DNA concentration was quantified using a spectrophotometer or fluorometer (using 1 x TNE and Hoechst dye).
在100μL反应体系中,每次消化5μg DNA。用限制性内切酶Sac I和Hind III分别消化基因组DNA,以T-DNA上EPSPS和PAT的部分序列作为探针。对于每种酶,在适当的温度下温育过夜消化物。利用真空离心蒸发浓缩器(speed vacuum)旋转样品以减少体积至30μL。5 μg of DNA was digested each time in a 100 μL reaction system. Genomic DNA was digested with restriction enzymes Sac I and Hind III, respectively, and a partial sequence of EPSPS and PAT on T-DNA was used as a probe. For each enzyme, the overnight digest was incubated at the appropriate temperature. The sample was rotated using a vacuum centrifugal speed vacuum to reduce the volume to 30 μL.
4.3、凝胶电泳4.3, gel electrophoresis
向来源于本实施例4.2中的每个样品添加溴酚蓝加样染料,并且将每个样品加样到含有溴化乙锭的0.7%琼脂糖凝胶上,在TBE电泳缓冲液中电泳分离,在20伏特下电泳凝胶过夜。Bromophenol blue loading dye was added to each sample derived from this Example 4.2, and each sample was applied to a 0.7% agarose gel containing ethidium bromide and electrophoretically separated in TBE running buffer. The gel was electrophoresed overnight at 20 volts.
在0.25M HCl中洗凝胶15分钟以使DNA脱嘌呤,然后用水洗。设定Southern印迹杂交如下:在盘中放置20张厚的干燥印迹纸,其上再放置4张薄的干燥印迹纸。在0.4M NaOH中预先湿润1张薄印迹纸,并且放置在该纸堆上,接着放置1张在0.4M NaOH中预先湿润的Hybond-N+转移膜(Amersham Pharmacia Biotech,#RPN303B)。凝胶置放在上部,确保在凝胶和膜之间没有气泡。3张另外预先浸泡的印迹纸被放置在凝胶上部,并且用0.4M NaOH填满缓冲液盘。用预先浸泡在0.4M NaOH中的灯芯连接凝胶堆层和缓冲液盘,将DNA转移到膜上。在室温下进行大约4小时的DNA转移。转移后,在2×SSC中漂洗Hybond膜10秒,DNA通过UV交联与膜结合。 The gel was washed in 0.25 M HCl for 15 minutes to dissociate the DNA and then washed with water. Southern blot hybridization was set as follows: 20 sheets of thick blotted paper were placed in the pan on which 4 thin dry blotting papers were placed. One thin blotting paper was pre-wetted in 0.4 M NaOH and placed on the paper pile, followed by one Hybond-N+ transfer film (Amersham Pharmacia Biotech, #RPN303B) pre-wetted in 0.4 M NaOH. The gel is placed on top to ensure that there are no air bubbles between the gel and the membrane. Three additional pre-soaked blotting papers were placed on top of the gel and the buffer pan was filled with 0.4 M NaOH. The gel was transferred to the membrane using a wick pre-soaked in 0.4 M NaOH to connect the gel stack to the buffer pan. DNA transfer was carried out for about 4 hours at room temperature. After the transfer, the Hybond membrane was rinsed in 2 x SSC for 10 seconds, and the DNA was bound to the membrane by UV crosslinking.
4.4、杂交4.4, hybridization
用PCR扩增适合的DNA序列用于探针制备。所述DNA探针为SEQ ID NO:24和SEQ ID NO:25,或者与上述序列部分同源或互补。将25ng探针DNA在45μLTE中煮沸5分钟,在冰上放置7分钟,然后转移到Rediprime II(Amersham Pharmacia Biotech,#RPN1633)试管中。向Rediprime试管添加5μl 32P标记的dCTP后,在37℃温育探针15分钟。根据制造商的说明书,通过微离心G-50柱子(Amersham Pharmacia Biotech,#27-5330-01)离心,以移除未掺入的dNTPs,纯化该探针。利用闪烁计数仪测量探针活性。Suitable DNA sequences were amplified by PCR for probe preparation. The DNA probe is SEQ ID NO: 24 and SEQ ID NO: 25, or is homologous or complementary to the above sequence. 25 ng of probe DNA was boiled in 45 μL for 5 minutes, placed on ice for 7 minutes, and then transferred to a Rediprime II (Amersham Pharmacia Biotech, #RPN1633) tube. After adding 5 μl of 32 P-labeled dCTP to the Rediprime tube, the probe was incubated at 37 ° C for 15 minutes. The probe was purified by centrifugation on a microcentrifuge G-50 column (Amersham Pharmacia Biotech, #27-5330-01) to remove unincorporated dNTPs according to the manufacturer's instructions. Probe activity was measured using a scintillation counter.
通过在65℃用20mL预加温的Church预杂交液(500mM Na3PO4,1mM EDTA,7%SDS,1%BSA)湿润该Hybond膜30分钟,预杂交该Hybond膜。煮沸标记的探针5分钟,并且在冰上放置10分钟。向预杂交缓冲液添加适量探针(每1mL预杂交缓冲液1百万次计数),在65℃过夜进行杂交。第二天,弃掉杂交缓冲液,用20mLChurch冲洗溶液1(40mM Na3PO4,1mM EDTA,5%SDS,0.5%BSA)漂洗后,在65℃下,在150mL Church冲洗溶液1中洗膜20分钟。用Church冲洗溶液2(40mM Na3PO4,1mM EDTA,1%SDS)重复该过程2次。将该膜暴露于磷屏或X光片以检测探针结合的位置。The Hybond membrane was pre-hybridized by wetting the Hybond membrane with 20 mL of pre-warmed Church pre-hybridization solution (500 mM Na 3 PO 4 , 1 mM EDTA, 7% SDS, 1% BSA) for 30 minutes at 65 °C. The labeled probe was boiled for 5 minutes and placed on ice for 10 minutes. An appropriate amount of probe (1 million counts per 1 mL of pre-hybridization buffer) was added to the pre-hybridization buffer, and hybridization was carried out overnight at 65 °C. On the next day, the hybridization buffer was discarded, rinsed with 20 mL of Church Wash Solution 1 (40 mM Na 3 PO 4 , 1 mM EDTA, 5% SDS, 0.5% BSA), and then washed at 150 ° C in 150 mL of Church Wash Solution 1. 20 minutes. This procedure was repeated twice with Church Wash Solution 2 (40 mM Na 3 PO 4 , 1 mM EDTA, 1% SDS). The film is exposed to a phosphor screen or X-ray film to detect where the probe is bound.
每个Southern上包括三种对照样品:(1)来自阴性(未转化的)的分离子的DNA,其用于鉴定任何可与元件-特异性探针杂交的内源玉米序列;(2)来自阴性分离子的DNA,其中引入了Hind III-消化的DBN10006,其量基于探针长度等价于一个拷贝数,以说明在检测玉米基因组内的单个基因拷贝时,该实验的灵敏度;和(3)基于探针长度等价于一个拷贝数的Hind III-消化的DBN10006质粒,其作为杂交的阳性对照并用于说明实验的灵敏度。Three control samples were included on each Southern: (1) DNA from a negative (untransformed) segregant used to identify any endogenous maize sequence that can hybridize to a component-specific probe; (2) from DNA of the negative segregant into which Hind III-digested DBN10006 was introduced, the amount of which is equivalent to a copy number based on the length of the probe to account for the sensitivity of the assay when detecting a single copy of the gene within the maize genome; and (3) A Hind III-digested DBN10006 plasmid equivalent to one copy number based on the length of the probe was used as a positive control for hybridization and used to demonstrate the sensitivity of the experiment.
杂交数据提供了确证的证据支持TaqManTMPCR分析,即玉米植物DBN9888含有EPSPS和PAT基因的单拷贝。利用该EPSPS探针,Sac I和Hind III酶解分别产生大小约7.8kb和12kb的单一条带;利用该PAT探针,Sac I和Hind III酶解分别产生大小约5.5kb和4.8kb的单一条带。这表明EPSPS和PAT各一个拷贝存在于玉米转化事件DBN9888中。Confirmatory hybridization data provide evidence to support the analysis TaqMan TM PCR, i.e. DBN9888 corn plants contain a single copy of EPSPS and PAT gene. Using the EPSPS probe, Sac I and Hind III digested a single band of approximately 7.8 kb and 12 kb, respectively; using the PAT probe, Sac I and Hind III enzymatically produced a single size of approximately 5.5 kb and 4.8 kb, respectively. Bands. This indicates that one copy of EPSPS and PAT is present in the maize transformation event DBN9888.
第五实施例、事件的除草剂耐受性检测Fifth embodiment, herbicide tolerance test of events
本试验选用农达除草剂(41%草甘膦异丙铵盐水剂)和保试达除草剂(有 效成分18%的草铵膦)进行喷施。采用随机区组设计,3次重复。小区面积为15m2(5m×3m),行距60cm,株距25cm,常规栽培管理,小区之间有1m的宽隔离带。将转基因玉米事件DBN9888分别进行如下3种处理:1)不喷施;2)按1680g a.e./ha(a.e./ha是指“活性成分当量酸每公顷”)剂量在V3叶期喷洒农达除草剂,然后在V8期按相同剂量再次喷洒农达除草剂;3)按800g a.i./ha(a.i./ha是指“活性成分每公顷”)剂量在V3叶期喷洒保试达(Basta)除草剂,然后在V8期按相同剂量再次喷洒保试达(Basta)除草剂。需要说明的是,不同含量和剂型的草甘膦除草剂换算成等量草甘膦酸的形式,以及不同浓度的草铵膦溶液换算成上述等量有效成分草铵膦均适用于以下结论。In this test, Roundup herbicide (41% glyphosate isopropylammonium salt) and herbicide (18% glufosinate) were sprayed. A random block design was used with 3 repetitions. The area of the plot is 15m 2 (5m×3m), the row spacing is 60cm, the plant spacing is 25cm, and the cultivation management is routine. There is a 1m wide isolation zone between the cells. The transgenic corn event DBN9888 was treated as follows: 1) not spraying; 2) spraying the Roundup herbicide at the V3 leaf stage at a dose of 1680 g ae/ha (ae/ha means "active ingredient equivalent acid per hectare") Then, spray the Roundup herbicide at the same dose in the V8 period; 3) Spray the Basta herbicide at the V3 leaf stage at a dose of 800g ai/ha (ai/ha means “active ingredient per hectare”). The Basta herbicide was then sprayed again at the same dose in the V8 period. It should be noted that glyphosate herbicides of different contents and dosage forms are converted into the same amount of glyphosate acid, and different concentrations of glufosinate solution are converted into the above-mentioned equivalent components of glufosinate, and the following conclusions are applicable.
分别在用药后1周和2周调查药害症状,并在收获时测定小区的玉米产量。药害症状分级如表6所示。用除草剂受害率作为评价转化事件的除草剂耐受性的指标,具体地,除草剂受害率(%)=∑(同级受害株数×级别数)/(总株数×最高级别);其中除草剂受害率包括草甘膦受害率和草铵膦受害率,除草剂受害率是根据草甘膦或草铵膦处理后2周的药害调查结果而确定的。每个小区的玉米产量是称量各小区中间3行的玉米粒总产量(重量),不同处理间的产量差异以产量百分率的形式进行度量,产量百分率(%)=喷施产量/不喷施产量。转基因玉米事件DBN9888对除草剂耐受性的结果和玉米产量结果如表7所示。The symptoms of the phytotoxicity were investigated 1 week and 2 weeks after the administration, and the corn yield of the plot was measured at the time of harvest. The classification of phytotoxicity symptoms is shown in Table 6. The herbicide victimization rate is used as an indicator for evaluating the herbicide tolerance of the transformation event, specifically, the herbicide victimization rate (%) = ∑ (number of affected plants × number of grades) / (total number of plants × highest level); The rate of damage to the agent includes glyphosate damage rate and glufosinate damage rate. The herbicide victimization rate is determined based on the results of the investigation of the phytotoxicity 2 weeks after glyphosate or glufosinate treatment. The corn yield per plot is the total yield (weight) of corn kernels in the middle 3 rows of each plot. The yield difference between different treatments is measured as the percentage of yield. The percentage of yield (%) = spray yield / no spray Yield. The results of the tolerant tolerance of the transgenic maize event DBN9888 and the results of maize yield are shown in Table 7.
表6、除草剂对玉米药害程度的分级标准Table 6. Grading criteria for herbicide damage to corn
Figure PCTCN2016080677-appb-000011
Figure PCTCN2016080677-appb-000011
表7、转基因玉米事件DBN9888对除草剂耐受性的结果和玉米产量结果Table 7. Results of herbicide tolerance and maize yield results for the transgenic maize event DBN9888
Figure PCTCN2016080677-appb-000012
Figure PCTCN2016080677-appb-000012
Figure PCTCN2016080677-appb-000013
Figure PCTCN2016080677-appb-000013
结果说明,在除草剂(草甘膦和草铵膦)受害率方面:1)转基因玉米事件DBN9888在草甘膦除草剂(1680g a.e./ha)处理下受害率基本为0;转基因玉米事件DBN9888在草铵膦除草剂(800g a.i./ha)处理下受害率也基本为0;由此,转基因玉米事件DBN9888具有良好的除草剂(草甘膦和草铵膦)耐受性。The results showed that in terms of the herbicide (glyphosate and glufosinate) damage rate: 1) the genetically modified corn event DBN9888 was basically 0 under the glyphosate herbicide (1680 g ae/ha) treatment; the transgenic corn event DBN9888 was The damage rate of glufosinate herbicide (800 g ai/ha) was also essentially 0; thus, the transgenic maize event DBN9888 had good tolerance to herbicides (glyphosate and glufosinate).
在产量方面:转基因玉米事件DBN9888在不喷施、草甘膦除草剂(1680ga.e./ha)和草铵膦除草剂(800g a.i./ha)3种处理下产量没有明显差异;在喷施除草剂后,转基因玉米事件DBN9888的产量基本没有降低,由此,进一步表明转基因玉米事件DBN9888具有良好的除草剂(草甘膦和草铵膦)耐受性。In terms of yield: the transgenic corn event DBN9888 did not differ significantly in yields without spraying, glyphosate herbicide (1680 ga.e./ha) and glufosinate herbicide (800 g ai/ha); After the herbicide, the yield of the transgenic corn event DBN9888 was not substantially reduced, thereby further indicating that the transgenic maize event DBN9888 has good tolerance to herbicides (glyphosate and glufosinate).
第六实施例Sixth embodiment
可由转基因玉米事件DBN9888生产诸如农产品或商品。如果在所述农产品或商品中检测到足够的表达量,所述农产品或商品预期含有能够诊断转基因玉米事件DBN9888材料在所述农产品或商品中存在的核苷酸序列。所述农产品或商品包括但不限于玉米油、玉米粗粉、玉米面、玉米面筋、玉米饼、玉米淀粉、以及将要作为食物源供动物消费的任何其他食品、或者另外作为膨大剂或化妆组合物中的成分用于化妆用途等。基于探针或引物对的核酸检测方法和/或试剂盒可以被开发以检测生物样品中诸如SEQ ID NO:1或SEQ ID NO:2所示的转基因玉米事件DBN9888核苷酸序列,其中探针序列或引物序列选自如SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4和SEQ ID NO:5中所示的序列,以诊断转基因玉米事件DBN9888的存在。Such as agricultural products or commodities can be produced by the genetically modified corn event DBN9888. If sufficient expression levels are detected in the agricultural product or commodity, the agricultural product or commodity is expected to contain a nucleotide sequence capable of diagnosing the presence of the transgenic maize event DBN9888 material in the agricultural product or commodity. The agricultural product or commodity includes, but is not limited to, corn oil, corn meal, cornmeal, corn gluten, tortilla, corn starch, and any other food product to be consumed as a food source for the animal, or otherwise as a swelling or cosmetic composition. The ingredients are used for cosmetic purposes and the like. A nucleic acid detection method and/or kit based on a probe or primer pair can be developed to detect a transgenic maize event DBN9888 nucleotide sequence as shown in SEQ ID NO: 1 or SEQ ID NO: 2 in a biological sample, wherein the probe The sequence or primer sequence is selected from the sequences set forth in SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, and SEQ ID NO: 5 to diagnose the presence of the transgenic maize event DBN9888.
综上所述,本发明转基因玉米事件DBN9888对草甘膦除草剂和草铵膦除草剂具有较好的耐受性,对产量无影响,且检测方法可以准确快速的鉴定生物样品中是否包含转基因玉米事件DBN9888的DNA分子。In summary, the transgenic corn event DBN9888 of the present invention has good tolerance to glyphosate herbicides and glufosinate herbicides, has no effect on the yield, and the detection method can accurately and quickly identify whether the biological sample contains the transgene. The DNA molecule of the corn event DBN9888.
对应于转基因玉米事件DBN9888的种子已于2014年12月24日保藏在中国微生物菌种保藏管理委员会普通微生物中心(简称CGMCC,地址:北京市 朝阳区北辰西路1号院3号,中国科学院微生物研究所,邮编100101),分类命名:玉米(Zea mays),保藏编号为CGMCC No.10216,并于2016年2月17日转换成根据布达佩斯条约的国际保藏。保藏物将在保藏处保藏30年。The seed corresponding to the genetically modified corn event DBN9888 was deposited on December 24, 2014 at the General Microbiology Center of China Microbial Culture Collection Management Committee (CGMCC, Address: Beijing No. 3, Beichen West Road, Chaoyang District, Institute of Microbiology, Chinese Academy of Sciences, 100101), classification: Maize (Zea mays), deposit number CGMCC No.10216, and converted to Budapest according to February 17, 2016 International deposit of the treaty. The deposit will be kept at the depository for 30 years.
最后所应说明的是,以上实施例仅用以说明本发明的技术方案而非限制,尽管参照较佳实施例对本发明进行了详细说明,本领域的普通技术人员应当理解,可以对本发明的技术方案进行修改或者等同替换,而不脱离本发明技术方案的精神和范围。 It should be noted that the above embodiments are merely illustrative of the technical solutions of the present invention, and are not intended to be limiting, although the present invention will be described in detail with reference to the preferred embodiments. Modifications or equivalents may be made without departing from the spirit and scope of the invention.

Claims (25)

  1. 具有以下核酸序列的核酸分子,其中,所述核酸序列包含SEQ ID NO:3或其互补序列中至少11个连续的核苷酸、和/或SEQ ID NO:4或其互补序列中至少11个连续的核苷酸。A nucleic acid molecule having a nucleic acid sequence comprising at least 11 contiguous nucleotides of SEQ ID NO: 3 or its complement, and/or at least 11 of SEQ ID NO: 4 or its complement Continuous nucleotides.
  2. 根据权利要求1所述核酸序列,其中,所述核酸序列包含SEQ ID NO:1或其互补序列、和/或SEQ ID NO:2或其互补序列。The nucleic acid sequence according to claim 1, wherein the nucleic acid sequence comprises SEQ ID NO: 1 or its complement, and/or SEQ ID NO: 2 or its complement.
  3. 根据权利要求2所述的核酸序列,其中,所述核酸序列包含SEQ ID NO:3或其互补序列、和/或SEQ ID NO:4或其互补序列。The nucleic acid sequence according to claim 2, wherein the nucleic acid sequence comprises SEQ ID NO: 3 or its complement, and/or SEQ ID NO: 4 or its complement.
  4. 根据权利要求3所述的核酸序列,其中,所述核酸序列包括SEQ ID NO:5或其互补序列。The nucleic acid sequence according to claim 3, wherein the nucleic acid sequence comprises SEQ ID NO: 5 or a complement thereof.
  5. 一种检测样品中转基因玉米事件DBN9888的DNA存在的方法,其包括:A method of detecting the presence of DNA in a transgenic maize event DBN9888 in a sample, comprising:
    使待检测样品与用于扩增目标扩增产物的至少两种引物在核酸扩增反应中接触;Passing the sample to be detected with at least two primers for amplifying the amplification product of the target in a nucleic acid amplification reaction;
    进行核酸扩增反应;和Performing a nucleic acid amplification reaction; and
    检测所述目标扩增产物的存在;Detecting the presence of the target amplification product;
    其中,所述目标扩增产物包含SEQ ID NO:3或其互补序列中至少11个连续的核苷酸、和/或SEQ ID NO:4或其互补序列中至少11个连续的核苷酸。Wherein the target amplification product comprises at least 11 contiguous nucleotides of SEQ ID NO: 3 or its complement, and/or at least 11 contiguous nucleotides of SEQ ID NO: 4 or its complement.
  6. 根据权利要求5所述检测样品中转基因玉米事件DBN9888的DNA存在的方法,其中,所述目标扩增产物包含SEQ ID NO:1或其互补序列中第1-11位或第12-22位连续核苷酸、和/或SEQ ID NO:2或其互补序列中第1-11位或第12-22位连续核苷酸。A method for detecting the presence of DNA in a transgenic maize event DBN9888 in a sample according to claim 5, wherein said target amplification product comprises SEQ ID NO: 1 or its complementary sequence at positions 1-11 or 12-22 consecutively Nucleotides, and/or contiguous nucleotides 1 to 11 or 12 to 22 in SEQ ID NO: 2 or its complement.
  7. 根据权利要求5或6所述检测样品中转基因玉米事件DBN9888的DNA存在的方法,其中,所述目标扩增产物包含选自以下的至少一种:SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、和SEQ ID NO:7或其互补序列。The method for detecting the presence of DNA of the transgenic maize event DBN9888 in a sample according to claim 5 or 6, wherein the target amplification product comprises at least one selected from the group consisting of SEQ ID NO: 1 or its complement, SEQ ID NO: 2 or its complement, SEQ ID NO: 6 or its complement, and SEQ ID NO: 7 or its complement.
  8. 根据权利要求5-7任一项所述检测样品中转基因玉米事件DBN9888的DNA存在的方法,其中,至少一种所述引物包含权利要求1-4任一项所述核 酸序列或其片段或者与之互补的序列。A method for detecting the presence of DNA of a transgenic maize event DBN9888 in a sample according to any one of claims 5-7, wherein at least one of said primers comprises the core of any of claims 1-4 An acid sequence or a fragment thereof or a sequence complementary thereto.
  9. 根据权利要求8所述检测样品中转基因玉米事件DBN9888的DNA存在的方法,其中,所述引物包含第一引物和第二引物,所述第一引物选自SEQ ID NO:8和SEQ ID NO:10;所述第二引物选自SEQ ID NO:9和SEQ ID NO:11。A method for detecting the presence of DNA of transgenic maize event DBN9888 in a sample according to claim 8, wherein said primer comprises a first primer and a second primer, said first primer being selected from the group consisting of SEQ ID NO: 8 and SEQ ID NO: 10; the second primer is selected from the group consisting of SEQ ID NO: 9 and SEQ ID NO: 11.
  10. 一种检测样品中转基因玉米事件DBN9888的DNA存在的方法,其包括:A method of detecting the presence of DNA in a transgenic maize event DBN9888 in a sample, comprising:
    使待检测样品与探针接触,所述探针包含SEQ ID NO:3或其互补序列中至少11个连续的核苷酸、和/或SEQ ID NO:4或其互补序列中至少11个连续的核苷酸;Contacting the sample to be detected with a probe comprising at least 11 contiguous nucleotides of SEQ ID NO: 3 or its complement, and/or at least 11 contiguous of SEQ ID NO: 4 or its complement Nucleotide
    使所述待检测样品和所述探针在严格杂交条件下杂交;和Hybridizing the sample to be detected and the probe under stringent hybridization conditions;
    检测所述待检测样品和所述探针的杂交情况。The hybridization of the sample to be detected and the probe is detected.
  11. 根据权利要求10所述检测样品中转基因玉米事件DBN9888的DNA存在的方法,其中,所述探针包含SEQ ID NO:1或其互补序列中第1-11位或第12-22位连续核苷酸、和/或SEQ ID NO:2或其互补序列中第1-11位或第12-22位连续核苷酸。A method for detecting the presence of DNA in a transgenic maize event DBN9888 in a sample according to claim 10, wherein said probe comprises contiguous nucleosides 1 to 11 or 12 to 22 in SEQ ID NO: 1 or its complement An acid, and/or a contiguous nucleotide at positions 1-11 or 12-22 of SEQ ID NO: 2 or its complement.
  12. 根据权利要求10或11所述检测样品中转基因玉米事件DBN9888的DNA存在的方法,其中,所述探针包含或具有选自以下的至少一种:SEQ ID NO:1或其互补序列、SEQ ID NO:2或其互补序列、SEQ ID NO:6或其互补序列、和SEQ ID NO:7或其互补序列。A method for detecting the presence of DNA of a transgenic maize event DBN9888 in a sample according to claim 10 or 11, wherein the probe comprises or has at least one selected from the group consisting of SEQ ID NO: 1 or its complement, SEQ ID NO: 2 or its complement, SEQ ID NO: 6 or its complement, and SEQ ID NO: 7 or its complement.
  13. 根据权利要求10-12任一项所述检测样品中转基因玉米事件DBN9888的DNA存在的方法,其中所述探针是标记物核酸分子,并且使用标记物辅助育种分析来确定草甘膦耐受性和/或草铵膦耐受性与标记物核酸分子在遗传学上是否是连锁的。Method for detecting the presence of DNA in transgenic maize event DBN9888 in a sample according to any one of claims 10-12, wherein the probe is a marker nucleic acid molecule and marker-assisted breeding analysis is used to determine glyphosate tolerance And/or glufosinate tolerance is genetically linked to the marker nucleic acid molecule.
  14. 根据权利要求10-13任一项所述检测样品中转基因玉米事件DBN9888的DNA存在的方法,其中,至少一个所述探针用至少一种荧光基团标己。A method of detecting the presence of DNA of a transgenic maize event DBN9888 in a sample according to any one of claims 10-13, wherein at least one of said probes is labeled with at least one fluorophore.
  15. 一种DNA检测试剂盒,其包含至少一个DNA分子,所述DNA分子包含SEQ ID NO:3的同源序列或其互补序列中至少11个连续的核苷酸、和/或SEQ ID NO:4的同源序列或其互补序列中至少11个连续的核苷酸,其可以 作为对于转基因玉米事件DBN9888或其后代具有特异性的DNA引物或探针。A DNA detection kit comprising at least one DNA molecule comprising at least 11 contiguous nucleotides of the homologous sequence of SEQ ID NO: 3 or a complement thereof, and/or SEQ ID NO: 4 At least 11 contiguous nucleotides in the homologous sequence or its complement, which may As a DNA primer or probe specific for the transgenic maize event DBN9888 or its progeny.
  16. 根据权利要求15所述DNA检测试剂盒,其中,所述DNA分子包含SEQ ID NO:1或其互补序列中第1-11位或第12-22位连续核苷酸、和/或SEQ ID NO:2或其互补序列中第1-11位或第12-22位连续核苷酸。The DNA detecting kit according to claim 15, wherein said DNA molecule comprises SEQ ID NO: 1 or a complementary nucleotide of nucleotides 1 to 11 or 12 to 22, and/or SEQ ID NO : 2 or contiguous nucleotides 1 to 12 or 12 to 22 in the complement.
  17. 根据权利要求15或16所述DNA检测试剂盒,其中,所述DNA分子包含选自以下的至少一种:SEQ ID NO:1的同源序列或其互补序列、SEQ ID NO:2的同源序列或其互补序列、SEQ ID NO:6的同源序列或其互补序列、和SEQ ID NO:7的同源序列或其互补序列。The DNA detecting kit according to claim 15 or 16, wherein the DNA molecule comprises at least one selected from the group consisting of the homologous sequence of SEQ ID NO: 1 or a complement thereof, and the homolog of SEQ ID NO: A sequence or a complement thereof, a homologous sequence of SEQ ID NO: 6 or a complement thereof, and a homologous sequence of SEQ ID NO: 7 or a complement thereof.
  18. 一种植物细胞或部分,其包含编码草甘膦耐受性EPSPS蛋白的核酸序列、编码草铵膦耐受性PAT蛋白的核酸序列和特定区域的核酸序列,所述特定区域的核酸序列包含选自以下的至少一种:SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:6和SEQ ID NO:7所示的序列。A plant cell or part comprising a nucleic acid sequence encoding a glyphosate-tolerant EPSPS protein, a nucleic acid sequence encoding a glufosinate-resistant PAT protein, and a nucleic acid sequence of a specific region, the nucleic acid sequence of the specific region comprising At least one of the following: the sequence of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 6, and SEQ ID NO: 7.
  19. 一种产生对草甘膦除草剂和/或草铵膦除草剂具有耐受性的玉米植株的方法,其包括:A method of producing a corn plant that is tolerant to a glyphosate herbicide and/or a glufosinate herbicide, comprising:
    向所述玉米植株的基因组中引入编码草甘膦耐受性EPSPS蛋白的核酸序列和/或编码草铵膦耐受性PAT蛋白的核酸序列、以及特定区域的核酸序列,所述特定区域的核酸序列选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列;Introducing into the genome of the maize plant a nucleic acid sequence encoding a glyphosate-tolerant EPSPS protein and/or a nucleic acid sequence encoding a glufosinate-resistant PAT protein, and a nucleic acid sequence of a specific region, the nucleic acid of the specific region The sequence is selected from at least one nucleic acid sequence of the sequences set forth in SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 6 and SEQ ID NO:
    优选地,所述方法包括向所述玉米植株的基因组中引入SEQ ID NO:5所示的核酸序列。Preferably, the method comprises introducing into the genome of the maize plant the nucleic acid sequence set forth in SEQ ID NO: 5.
  20. 根据权利要求19所述产生对草甘膦除草剂和/或草铵膦除草剂具有耐受性的玉米植株的方法,其包括:A method of producing a corn plant that is tolerant to a glyphosate herbicide and/or a glufosinate herbicide according to claim 19, comprising:
    将对草甘膦除草剂和草铵膦除草剂具有耐受性的转基因玉米事件DBN9888第一亲本玉米植株与缺少草甘膦和/或草铵膦耐受性的第二亲本玉米植株有性杂交,从而产生大量子代植株;Transgenic maize event DBN9888 first parent maize plant tolerant to glyphosate herbicide and glufosinate herbicide was sexually crossed with a second parental maize plant lacking glyphosate and/or glufosinate tolerance , thereby producing a large number of progeny plants;
    用草甘膦除草剂处理所述子代植株;和Treating the progeny plants with a glyphosate herbicide; and
    选择耐受草甘膦的所述子代植株。The progeny plants that are tolerant to glyphosate are selected.
  21. 一种培养对草甘膦除草剂和/或草铵膦除草剂具有耐受性的玉米植物的方法,其包括: A method of cultivating a corn plant that is tolerant to a glyphosate herbicide and/or a glufosinate herbicide, comprising:
    种植至少一粒玉米种子,所述玉米种子的基因组中包含:编码草甘膦耐受性EPSPS蛋白的核酸序列和/或编码草铵膦耐受性PAT蛋白的核酸序列、以及特定区域的核酸序列;Planting at least one corn seed, the genome of the corn seed comprising: a nucleic acid sequence encoding a glyphosate-tolerant EPSPS protein and/or a nucleic acid sequence encoding a glufosinate-tolerant PAT protein, and a nucleic acid sequence of a specific region ;
    使所述玉米种子长成玉米植株;Growing the corn seed into a corn plant;
    用有效剂量草甘膦除草剂和/或草铵膦除草剂喷洒所述玉米植株,收获与其他不具有特定区域的核酸序列的植株相比具有减弱的植物损伤的植株;Spraying the corn plant with an effective amount of a glyphosate herbicide and/or a glufosinate herbicide to harvest plants having reduced plant damage compared to other plants having no nucleic acid sequence of a particular region;
    所述特定区域的核酸序列选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列;The nucleic acid sequence of the specific region is selected from at least one of the sequences shown in SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 6, and SEQ ID NO: 7. Nucleic acid sequence;
    优选地,所述方法包括:Preferably, the method comprises:
    种植至少一粒玉米种子,所述玉米种子的基因组中包含SEQ ID NO:5所示的核酸序列;Planting at least one corn seed, the genome of the corn seed comprising the nucleic acid sequence set forth in SEQ ID NO: 5;
    使所述玉米种子长成玉米植株;Growing the corn seed into a corn plant;
    用有效剂量草甘膦除草剂喷洒所述玉米植株,收获与其他不具有SEQ ID NO:5的植株相比具有减弱的植物损伤的植株。The corn plants were sprayed with an effective dose of glyphosate herbicide to harvest plants having reduced plant damage compared to other plants not having SEQ ID NO: 5.
  22. 一种保护植物免受由除草剂引起的损伤和/或控制田间杂草的方法,其包括将含有有效剂量草甘膦和/或草铵膦的除草剂施加到种植至少一种转基因玉米植物的大田中,所述转基因玉米植物在其基因组中包含选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列,所述转基因玉米植物具有对草甘膦除草剂和/或草铵膦除草剂的耐受性。A method of protecting plants from damage caused by herbicides and/or controlling field weeds, comprising applying a herbicide comprising an effective amount of glyphosate and/or glufosinate to at least one transgenic corn plant In the field, the transgenic maize plant comprises in its genome a cell selected from the group consisting of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 6. And at least one nucleic acid sequence of the sequence set forth in SEQ ID NO: 7, the transgenic maize plant having tolerance to a glyphosate herbicide and/or a glufosinate herbicide.
  23. 一种控制草甘膦耐受性植物的大田中草甘膦抗性杂草的方法,其包括将含有有效剂量草铵膦的除草剂施加到种植至少一种草甘膦耐受性的转基因玉米植物的大田中,所述草甘膦耐受性的转基因玉米植物在其基因组中包含选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列,所述草甘膦耐受性的转基因玉米植物同时具有对草铵膦除草剂的耐受性。A method of controlling glyphosate-resistant weeds in a field of glyphosate-tolerant plants, comprising applying a herbicide comprising an effective amount of glufosinate to a transgenic corn planted with at least one glyphosate-tolerant In the field of the plant, the glyphosate-tolerant transgenic maize plant comprises in its genome a SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: 5, at least one of the sequences of SEQ ID NO: 6 and SEQ ID NO: 7, wherein the glyphosate-tolerant transgenic maize plant has both tolerance to glufosinate herbicide.
  24. 一种延缓昆虫抗性的方法,其包括在种植抗虫玉米植物的大田中种植至少一种具有草甘膦和/或草铵膦耐受性的转基因玉米植物,所述具有草甘膦 和/或草铵膦耐受性的转基因玉米植物在其基因组中包含选自SEQ ID NO:1、SEQ ID NO:2、SEQ ID NO:3、SEQ ID NO:4、SEQ ID NO:5、SEQ ID NO:6和SEQ ID NO:7所示序列中至少一种核酸序列。A method for delaying insect resistance comprising planting at least one transgenic maize plant having glyphosate and/or glufosinate tolerance in a field planted with a pest-resistant corn plant, said glyphosate And/or glufosinate-tolerant transgenic maize plants comprising in their genome a sequence selected from the group consisting of SEQ ID NO: 1, SEQ ID NO: 2, SEQ ID NO: 3, SEQ ID NO: 4, SEQ ID NO: At least one nucleic acid sequence of the sequences set forth in SEQ ID NO: 6 and SEQ ID NO: 7.
  25. 一种包含SEQ ID NO:1或SEQ ID NO:2的多核苷酸的农产品或商品,其中,所述农产品或商品为玉米粉、玉米面、玉米油、玉米淀粉、玉米面筋、玉米饼、化妆品或填充剂。 An agricultural product or commodity comprising the polynucleotide of SEQ ID NO: 1 or SEQ ID NO: 2, wherein the agricultural product or commodity is corn flour, corn flour, corn oil, corn starch, corn gluten, tortilla, cosmetics or Filler.
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