TR201903963T4 - Hizalama içermeyen sekans analizi kullanılarak bir hedef sekans içindeki mutasyon(lar)ı içeren üyeler için bir popülasyonun taranmasına ait yüksek verimlilik metodu. - Google Patents

Hizalama içermeyen sekans analizi kullanılarak bir hedef sekans içindeki mutasyon(lar)ı içeren üyeler için bir popülasyonun taranmasına ait yüksek verimlilik metodu. Download PDF

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Publication number
TR201903963T4
TR201903963T4 TR2019/03963T TR201903963T TR201903963T4 TR 201903963 T4 TR201903963 T4 TR 201903963T4 TR 2019/03963 T TR2019/03963 T TR 2019/03963T TR 201903963 T TR201903963 T TR 201903963T TR 201903963 T4 TR201903963 T4 TR 201903963T4
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Prior art keywords
screening
high throughput
alignment
population
target sequence
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TR2019/03963T
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English (en)
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Wilfred Banks Travi̇s
John Somers Daryl
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Vineland Res And Innovations Centre Inc
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Publication of TR201903963T4 publication Critical patent/TR201903963T4/tr

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    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/50—Mutagenesis
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids

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  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • General Health & Medical Sciences (AREA)
  • Biotechnology (AREA)
  • Analytical Chemistry (AREA)
  • Biophysics (AREA)
  • Organic Chemistry (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Evolutionary Biology (AREA)
  • Theoretical Computer Science (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

Buluş moleküler biyoloji ve genetik alanı ile ilgilidir. Özellikle, hizalama içermeyen sekans analizi kullanılarak bir veya daha fazla hedef sekans(lar)daki mutasyon(lar)ı içeren bir popülasyonun üyeleri için taramanın yüksek verimli ters genetik metotları ile ilgilidir. Buluş ayrıca metotlar ile kullanımı için kitleri sağlar.
TR2019/03963T 2015-11-04 2016-11-03 Hizalama içermeyen sekans analizi kullanılarak bir hedef sekans içindeki mutasyon(lar)ı içeren üyeler için bir popülasyonun taranmasına ait yüksek verimlilik metodu. TR201903963T4 (tr)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
CA2911002A CA2911002C (en) 2015-11-04 2015-11-04 High throughput method of screening a population for members comprising mutations(s) in a target sequence using alignment-free sequence analysis

Publications (1)

Publication Number Publication Date
TR201903963T4 true TR201903963T4 (tr) 2019-04-22

Family

ID=55027904

Family Applications (1)

Application Number Title Priority Date Filing Date
TR2019/03963T TR201903963T4 (tr) 2015-11-04 2016-11-03 Hizalama içermeyen sekans analizi kullanılarak bir hedef sekans içindeki mutasyon(lar)ı içeren üyeler için bir popülasyonun taranmasına ait yüksek verimlilik metodu.

Country Status (7)

Country Link
US (1) US10106849B2 (tr)
EP (1) EP3180723B1 (tr)
CA (1) CA2911002C (tr)
DK (1) DK3180723T3 (tr)
ES (1) ES2714851T3 (tr)
TR (1) TR201903963T4 (tr)
WO (1) WO2017075706A1 (tr)

Families Citing this family (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2911002C (en) 2015-11-04 2016-11-29 Travis Wilfred BANKS High throughput method of screening a population for members comprising mutations(s) in a target sequence using alignment-free sequence analysis
CN110021365B (zh) * 2018-06-22 2021-01-22 深圳市达仁基因科技有限公司 确定检测靶点的方法、装置、计算机设备和存储介质
CN110079589A (zh) * 2019-05-21 2019-08-02 中国农业科学院农业基因组研究所 一种精准获得全基因组范围内结构变异的方法
CN110592265B (zh) * 2019-10-29 2023-11-24 江西省农业科学院蔬菜花卉研究所 一种用于茄属植物快速鉴定的dna条形码及方法
CN110904258B (zh) * 2019-12-03 2021-08-17 湖南杂交水稻研究中心 一种高通量靶向鉴定理化诱变植株m1代突变及获取突变体的方法
CN111696629B (zh) * 2020-06-29 2023-04-18 电子科技大学 一种rna测序数据的基因表达量计算方法
KR20230039218A (ko) * 2021-09-14 2023-03-21 (주)디엑솜 차세대 염기서열 분석을 위한 짝지어진 서열조각 병합 표시 방법

Family Cites Families (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20090170713A1 (en) 2005-09-29 2009-07-02 Keygene N.V. High throughput screening of mutagenized populations
US20100112557A1 (en) * 2008-11-03 2010-05-06 Applied Biosystems Inc. Method for high resolution melt genotyping
EP2964788A4 (en) * 2013-03-08 2017-01-18 Vineland Research and Innovation Centre High throughput method of screening a population for members comprising mutation(s) in a target sequence
US20150073724A1 (en) 2013-07-29 2015-03-12 Agilent Technologies, Inc Method for finding variants from targeted sequencing panels
CA2911002C (en) 2015-11-04 2016-11-29 Travis Wilfred BANKS High throughput method of screening a population for members comprising mutations(s) in a target sequence using alignment-free sequence analysis

Also Published As

Publication number Publication date
US10106849B2 (en) 2018-10-23
CA2911002C (en) 2016-11-29
EP3180723A4 (en) 2017-11-22
EP3180723A1 (en) 2017-06-21
CA2911002A1 (en) 2016-01-07
EP3180723B1 (en) 2019-01-09
DK3180723T3 (en) 2019-04-01
ES2714851T3 (es) 2019-05-30
WO2017075706A1 (en) 2017-05-11
US20170335388A1 (en) 2017-11-23

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