MX2019014689A - Clasificacion de sitio de escision y empalme basado en aprendizaje profundo. - Google Patents
Clasificacion de sitio de escision y empalme basado en aprendizaje profundo.Info
- Publication number
- MX2019014689A MX2019014689A MX2019014689A MX2019014689A MX2019014689A MX 2019014689 A MX2019014689 A MX 2019014689A MX 2019014689 A MX2019014689 A MX 2019014689A MX 2019014689 A MX2019014689 A MX 2019014689A MX 2019014689 A MX2019014689 A MX 2019014689A
- Authority
- MX
- Mexico
- Prior art keywords
- residual blocks
- convolution
- based classifier
- neural network
- convolutional neural
- Prior art date
Links
- 238000013135 deep learning Methods 0.000 title 1
- 208000037170 Delayed Emergence from Anesthesia Diseases 0.000 abstract 7
- 238000013527 convolutional neural network Methods 0.000 abstract 3
- 230000001717 pathogenic effect Effects 0.000 abstract 2
- 238000000034 method Methods 0.000 abstract 1
Classifications
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/30—Unsupervised data analysis
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N20/00—Machine learning
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N20/00—Machine learning
- G06N20/10—Machine learning using kernel methods, e.g. support vector machines [SVM]
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N3/00—Computing arrangements based on biological models
- G06N3/02—Neural networks
- G06N3/04—Architecture, e.g. interconnection topology
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N3/00—Computing arrangements based on biological models
- G06N3/02—Neural networks
- G06N3/04—Architecture, e.g. interconnection topology
- G06N3/047—Probabilistic or stochastic networks
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N3/00—Computing arrangements based on biological models
- G06N3/02—Neural networks
- G06N3/04—Architecture, e.g. interconnection topology
- G06N3/048—Activation functions
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N3/00—Computing arrangements based on biological models
- G06N3/02—Neural networks
- G06N3/08—Learning methods
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N3/00—Computing arrangements based on biological models
- G06N3/02—Neural networks
- G06N3/08—Learning methods
- G06N3/084—Backpropagation, e.g. using gradient descent
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B15/00—ICT specially adapted for analysing two-dimensional or three-dimensional molecular structures, e.g. structural or functional relations or structure alignment
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/20—Supervised data analysis
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
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- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F18/00—Pattern recognition
- G06F18/20—Analysing
- G06F18/24—Classification techniques
Landscapes
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Life Sciences & Earth Sciences (AREA)
- Theoretical Computer Science (AREA)
- Health & Medical Sciences (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Data Mining & Analysis (AREA)
- Medical Informatics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Software Systems (AREA)
- Evolutionary Computation (AREA)
- Artificial Intelligence (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Bioinformatics & Computational Biology (AREA)
- Evolutionary Biology (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- General Physics & Mathematics (AREA)
- Molecular Biology (AREA)
- Computing Systems (AREA)
- Mathematical Physics (AREA)
- Computational Linguistics (AREA)
- Biomedical Technology (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Bioethics (AREA)
- Databases & Information Systems (AREA)
- Chemical & Material Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Analytical Chemistry (AREA)
- Epidemiology (AREA)
- Public Health (AREA)
- Genetics & Genomics (AREA)
- Probability & Statistics with Applications (AREA)
- Crystallography & Structural Chemistry (AREA)
- Image Analysis (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
- Error Detection And Correction (AREA)
- Investigating Or Analysing Biological Materials (AREA)
Abstract
La tecnología divulgada se refiere a la construcción de un clasificador convolucional basado en redes neuronales para la clasificación de variantes. En particular, se relaciona con el entrenamiento de un clasificador basado en redes neuronales convolucionales sobre datos de entrenamiento usando una técnica de actualización de gradiente basada en propagación inversa que empareja progresivamente las salidas del clasificador basado en la red convolucional con etiquetas correspondientes de la realidad del terreno. El clasificador basado en redes neuronales convolucionales comprende grupos de bloques residuales, cada grupo de bloques residuales se parametrizan mediante varios filtros de convolución en los bloques residuales, un tamaño de ventana de convolución de los bloques residuales y una tasa de convolución atroz de los bloques residuales, el tamaño de la ventana de convolución varía entre los grupos de bloques residuales, la tasa de convolución atroz varía entre grupos de bloques residuales. Los datos de entrenamiento incluyen ejemplos de entrenamiento benignos y ejemplos de entrenamiento patogénico de pares de secuencias traducidas generadas a partir de variantes benignas y variantes patogénicas.
Applications Claiming Priority (5)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201762573135P | 2017-10-16 | 2017-10-16 | |
US201762573125P | 2017-10-16 | 2017-10-16 | |
US201762573131P | 2017-10-16 | 2017-10-16 | |
US201862726158P | 2018-08-31 | 2018-08-31 | |
PCT/US2018/055915 WO2019079198A1 (en) | 2017-10-16 | 2018-10-15 | CLASSIFICATION OF A CONNECTION SITE BASED ON DEEP LEARNING |
Publications (1)
Publication Number | Publication Date |
---|---|
MX2019014689A true MX2019014689A (es) | 2020-10-19 |
Family
ID=64051844
Family Applications (2)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
MX2019014689A MX2019014689A (es) | 2017-10-16 | 2018-10-15 | Clasificacion de sitio de escision y empalme basado en aprendizaje profundo. |
MX2022014869A MX2022014869A (es) | 2017-10-16 | 2019-12-05 | Clasificacion de sitio de escision y empalme basado en aprendizaje profundo. |
Family Applications After (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
MX2022014869A MX2022014869A (es) | 2017-10-16 | 2019-12-05 | Clasificacion de sitio de escision y empalme basado en aprendizaje profundo. |
Country Status (14)
Country | Link |
---|---|
US (6) | US11488009B2 (es) |
EP (4) | EP3628099B1 (es) |
JP (7) | JP6896111B2 (es) |
KR (6) | KR102526103B1 (es) |
CN (3) | CN110914910A (es) |
AU (5) | AU2018350907B9 (es) |
BR (1) | BR112019027609A2 (es) |
CA (1) | CA3066534A1 (es) |
IL (5) | IL283203B2 (es) |
MX (2) | MX2019014689A (es) |
MY (1) | MY195477A (es) |
NZ (3) | NZ759879A (es) |
SG (3) | SG11201912781TA (es) |
WO (3) | WO2019079198A1 (es) |
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