KR20210150221A - 암 전이 및 재발 진단용 조성물 - Google Patents
암 전이 및 재발 진단용 조성물 Download PDFInfo
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- KR20210150221A KR20210150221A KR1020200067308A KR20200067308A KR20210150221A KR 20210150221 A KR20210150221 A KR 20210150221A KR 1020200067308 A KR1020200067308 A KR 1020200067308A KR 20200067308 A KR20200067308 A KR 20200067308A KR 20210150221 A KR20210150221 A KR 20210150221A
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Abstract
본 발명은 CD110 및 CDCP1으로 이루어진 군에서 선택되는 어느 하나 이상의 단백질 또는 이를 코딩하는 유전자를 포함하는 바이오마커에 관한 것으로서, CD110 및 CDCP1의 발현 수준을 비침습적인 방법으로 측정하여 암의 전이 또는 재발 여부를 판단할 수 있다. 따라서, 상기 CD110 및 CDCP1은 암 전이 또는 재발 진단용 바이오마커로서 유용하게 활용될 수 있다.
Description
본 발명은 CD110 및 CDCP1으로 이루어진 군에서 선택되는 하나 이상의 단백질 또는 이를 코딩하는 유전자를 포함하는 바이오마커와 CD110 및 CDCP1으로 이루어진 군에서 선택되는 어느 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 물질을 포함하는 암 전이 또는 재발 진단용 조성물, 키트 및 암 전이 또는 재발 진단을 위한 정보제공방법에 관한 것이다.
암 전이는 암세포가 초기 발생 부위에서 다른 부위로 전달되어 그 다른 부위에서 암세포의 상호작용을 통해 다시 성장하는 것을 말한다. 대부분의 암세포는 암이 처음 발생한 부위인 원발 부위로부터 이탈한 후에는 주변 세포나 조직으로부터 더 이상 생존 신호를 받지 못하게 되어 스스로 사멸하게 되지만 일부 암세포는 원발 부위를 이탈한 이후에도 생존하여 궁극적으로 전이를 일으키게 된다. 특히, 대장암은 이른 시기에 발견되면 완치를 기대해 볼 수 있으나, 발견 시기가 늦어질수록 폐, 간, 림프절이나 복막 등 절제하기 어려운 곳으로의 전이가 일어난다. 대장암은 초기에는 대부분 아무런 증상이 없으며, 증상이 나타난 경우에는 이미 상당히 진행된 경우가 많다. 따라서, 이를 조기 진단하는 것이 중요하나, 특별한 이상 징후가 없는 경우가 많기 때문에, 대장암 전이의 진단에 어려움이 있다(KR 10-2006999 B1).
또한, 화학적 또는 외과적 항암치료를 마친 후에도 재발의 위험은 상존하기 때문에 재발 여부를 조기에 진단하는 것이 중요하다.
암을 진단하는 방법으로는 침습적인 조직검사가 주로 활용되고 있으나, 병변 부위에서 암조직을 채취하기 위해서는 외과적인 수술이 요구되기 때문에, 환자에게 고통이 수반되고, 암 전이 유무에 따라 조직 획득이 어려우며, 반복적으로 조직검사가 필요할 수 있어 환자에게 부담이 크다. 이에, 암을 진단하는 방법으로 비침습적인 방법인 혈액 시료를 활용하는 방법이 시도되고 있으나, 정확도가 낮아 참고적 검사로만 활용이 가능한 실정이다.
이에, 본 발명자들은 비침습적이고 조기 진단이 가능하며, 정확도가 높은 암 전이 또는 재발 진단용 바이오마커를 개발하기 위해 연구한 결과, 종래 혈액에서 검출된다고 보고된 적 없는 CD110 및 CDCP1이 암 전이 또는 재발 시에 혈액 시료에서 발현 수준이 증가한다는 점을 처음으로 확인함으로써 본 발명을 완성하였다.
따라서, 본 발명의 목적은 비침습적인 방법으로 암 전이 또는 재발을 진단하기 위한 바이오마커와 암 전이 또는 재발 진단용 조성물을 제공하는 것이다.
본 발명의 다른 목적은 상기 바이오마커를 이용한 암의 전이 또는 재발을 진단하기 위한 정보제공방법을 제공하는 것이다.
상기 목적을 달성하기 위해, 본 발명의 일 측면은, CD110 및 CDCP1으로 이루어진 군에서 선택되는 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 물질을 포함하는, 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 조성물을 제공한다.
본 발명의 다른 측면은 암이 발생한 개체로부터 분리된 혈액 시료에서 CD110 및 CDCP1으로 이루어진 군에서 선택되는 어느 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및 상기 측정된 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 높은 경우를 암 전이 상태로 판정하는 단계를 포함하는, 암 전이 진단을 위한 정보제공방법을 제공한다.
본 발명의 다른 측면은 종양 치료를 받은 개체로부터 분리된 혈액 시료에서 CD110 및 CDCP1으로 이루어진 군에서 선택되는 어느 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및 상기 측정된 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 높은 경우를 암 재발 상태로 판정하는 단계를 포함하는, 암 재발 진단을 위한 정보제공방법을 제공한다.
본 발명의 다른 측면은 ABCA1 및 IDOL로 이루어진 군에서 선택되는 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 물질을 포함하는 암 전이 또는 재발 진단용 조성물을 제공한다.
본 발명의 다른 측면은 암이 발생한 개체로부터 분리된 혈액 시료에서 ABCA1 및 IDOL로 이루어진 군에서 선택되는 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및 상기 측정된 ABCA1 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 낮은 경우를 암 전이 상태로 판정하고, 상기 측정된 IDOL 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 높은 경우를 암 전이 상태로 판정하는 단계를 포함하는, 암 전이 진단을 위한 정보제공방법을 제공한다.
본 발명의 다른 측면은 종양 치료를 받은 개체로부터 분리된 혈액 시료에서 ABCA1 및 IDOL로 이루어진 군에서 선택되는 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및 상기 측정된 ABCA1 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 낮은 경우를 암 재발 상태로 판정하고, 상기 측정된 IDOL 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 높은 경우를 암 재발 상태로 판정하는 단계를 포함하는, 암 재발 진단을 위한 정보제공방법을 제공한다.
본 발명에 따른 CD110 및 CDCP1을 포함한 암 전이 또는 재발 진단용 바이오마커는 비침습적인 방법으로 정확하게 암 전이 또는 재발을 진단할 수 있으므로 침습적인 방법보다 안전하고 쉽게 암 전이 또는 재발을 진단할 수 있다.
도 1은 비부착성 플레이트를 이용한 콜레스테롤의 처리 또는 스쿠알렌 에폭시다아제(squalene epoxidase, SQLE)의 발현 저해 정도에 따른 대장암 세포주(HT29 및 HCT116)의 증식 정도를 광학 현미경 및 MTT 분석법을 이용하여 확인한 결과이다.
도 2는 비부착성 플레이트를 이용한 콜레스테롤의 처리에 따른 대장암 세포주(HCT116 및 HT29)에서 암세포 마커(CD110 및 CDCP1), 콜레스테롤 유입 관련 단백질(IDOL) 및 콜레스테롤 방출 관련 단백질(ABCA1)의 유전자 발현 정도를 Quantitative PCR을 이용하여 확인한 결과이다.
도 3a는 콜레스테롤의 처리에 따른 대장암 세포주(HCT116)에서 CD45, 암줄기세포 마커(EpCAM), 암세포 마커(CD110 및 CDCP1) 및 SQLE의 발현 정도를 유세포 분석(flow cytometry analysis)을 이용하여 확인한 결과이고, 도 3b는 콜레스테롤의 처리에 따른 대장암 세포주(HT29)에서 CD45, 암줄기세포 마커(EpCAM), 암세포 마커(CD110 및 CDCP1) 및 SQLE의 발현 정도를 유세포 분석(flow cytometry analysis)을 이용하여 확인한 결과이다.
도 4a는 암 전이 동물모델의 제조 방법을 모식도로 나타낸 것이다.
도 4b는 암 전이 동물모델 마우스(HCT116 p53-/-, HT29 또는 HCT116)에 대해 식이를 조절하여 사육을 시작한 날로부터 5주, 9주 및 25주 내지 26주차의 혈청내 콜레스테롤을 측정한 결과를 나타낸 것이다.
도 4c 및 도 4d는 암 전이 동물모델 마우스(HT29)를 30일, 60일, 90일 및 120일간 사육하면서 in-vivo bioluminescence imaging(BLi)을 이용하여 콜레스테롤의 처리 및 SQLE의 발현 저해 정도에 따른 암 전이 정도를 촬영(도 4c) 및 수치화(도 4d)한 결과이다.
도 4e 및 도 4f는 암 전이 동물모델 마우스(HCT116)를 30일, 60일, 90일 및 120일간 사육하면서 in-vivo bioluminescence imaging(BLi)을 이용하여 콜레스테롤의 처리 및 SQLE의 발현 저해 정도에 따른 암 전이 정도를 촬영(도 4e) 및 수치화(도 4f)한 결과이다.
도 5a는 암 전이 마우스 모델(HT29)에서 콜레스테롤의 처리 및 SQLE의 발현 저해 정도에 따른 폐조직 내에서의 대장암 세포 마커(CDCP1)의 수준을 공초점형광현미경을 이용하여 분석한 결과이다.
도 5b는 암 전이 마우스 모델(HCT116)에서 콜레스테롤의 처리 및 SQLE의 발현 저해 정도에 따른 폐조직 내에서의 대장암 세포 마커(CDCP1)의 수준을 공초점형광현미경을 이용하여 분석한 결과이다.
도 6a 및 도 6c는 암 전이 동물모델 마우스(HT29)의 혈액 시료에서 콜레스테롤의 처리 및 SQLE의 발현 저해 정도에 따른 암줄기세포 마커(EpCAM), 암세포 마커(CD110 및 CDCP1) 및 SQLE의 수준을 유세포 분석을 이용하여 분석(도 6a)하고 수치화한 결과(도 6c)이다.
도 6b 및 도 6d는 암 전이 동물모델 마우스(HCT116)의 혈액 시료에서 콜레스테롤의 처리 및 SQLE의 발현 저해 정도에 따른 암줄기세포 마커(EpCAM), 암세포 마커(CD110 및 CDCP1) 및 SQLE의 수준을 유세포 분석을 이용하여 분석(도 6b)하고 수치화한 결과(도 6d)이다.
도 2는 비부착성 플레이트를 이용한 콜레스테롤의 처리에 따른 대장암 세포주(HCT116 및 HT29)에서 암세포 마커(CD110 및 CDCP1), 콜레스테롤 유입 관련 단백질(IDOL) 및 콜레스테롤 방출 관련 단백질(ABCA1)의 유전자 발현 정도를 Quantitative PCR을 이용하여 확인한 결과이다.
도 3a는 콜레스테롤의 처리에 따른 대장암 세포주(HCT116)에서 CD45, 암줄기세포 마커(EpCAM), 암세포 마커(CD110 및 CDCP1) 및 SQLE의 발현 정도를 유세포 분석(flow cytometry analysis)을 이용하여 확인한 결과이고, 도 3b는 콜레스테롤의 처리에 따른 대장암 세포주(HT29)에서 CD45, 암줄기세포 마커(EpCAM), 암세포 마커(CD110 및 CDCP1) 및 SQLE의 발현 정도를 유세포 분석(flow cytometry analysis)을 이용하여 확인한 결과이다.
도 4a는 암 전이 동물모델의 제조 방법을 모식도로 나타낸 것이다.
도 4b는 암 전이 동물모델 마우스(HCT116 p53-/-, HT29 또는 HCT116)에 대해 식이를 조절하여 사육을 시작한 날로부터 5주, 9주 및 25주 내지 26주차의 혈청내 콜레스테롤을 측정한 결과를 나타낸 것이다.
도 4c 및 도 4d는 암 전이 동물모델 마우스(HT29)를 30일, 60일, 90일 및 120일간 사육하면서 in-vivo bioluminescence imaging(BLi)을 이용하여 콜레스테롤의 처리 및 SQLE의 발현 저해 정도에 따른 암 전이 정도를 촬영(도 4c) 및 수치화(도 4d)한 결과이다.
도 4e 및 도 4f는 암 전이 동물모델 마우스(HCT116)를 30일, 60일, 90일 및 120일간 사육하면서 in-vivo bioluminescence imaging(BLi)을 이용하여 콜레스테롤의 처리 및 SQLE의 발현 저해 정도에 따른 암 전이 정도를 촬영(도 4e) 및 수치화(도 4f)한 결과이다.
도 5a는 암 전이 마우스 모델(HT29)에서 콜레스테롤의 처리 및 SQLE의 발현 저해 정도에 따른 폐조직 내에서의 대장암 세포 마커(CDCP1)의 수준을 공초점형광현미경을 이용하여 분석한 결과이다.
도 5b는 암 전이 마우스 모델(HCT116)에서 콜레스테롤의 처리 및 SQLE의 발현 저해 정도에 따른 폐조직 내에서의 대장암 세포 마커(CDCP1)의 수준을 공초점형광현미경을 이용하여 분석한 결과이다.
도 6a 및 도 6c는 암 전이 동물모델 마우스(HT29)의 혈액 시료에서 콜레스테롤의 처리 및 SQLE의 발현 저해 정도에 따른 암줄기세포 마커(EpCAM), 암세포 마커(CD110 및 CDCP1) 및 SQLE의 수준을 유세포 분석을 이용하여 분석(도 6a)하고 수치화한 결과(도 6c)이다.
도 6b 및 도 6d는 암 전이 동물모델 마우스(HCT116)의 혈액 시료에서 콜레스테롤의 처리 및 SQLE의 발현 저해 정도에 따른 암줄기세포 마커(EpCAM), 암세포 마커(CD110 및 CDCP1) 및 SQLE의 수준을 유세포 분석을 이용하여 분석(도 6b)하고 수치화한 결과(도 6d)이다.
이하, 본 발명을 상세히 설명한다.
본 발명의 일 측면은, CD110 및 CDCP1으로 이루어진 군에서 선택되는 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 물질을 포함하는, 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 조성물을 제공한다.
본 명세서에서 사용한 용어, "CD110"은 Cluster of Differentiation 110의 약자로서, 트롬보포이에틴 수용체(thrombopoietin receptor) 또는 myeloproliferative leukemia protein으로 알려져 있다.
상기 CD110은 서열번호 1의 아미노산 서열일 수 있고, 상기 서열과 97% 이상, 구체적으로는 98% 이상, 보다 구체적으로는 99% 이상의 상동성을 갖는 아미노산 서열을 포함할 수 있다.
이러한 상동성으로 이루어진 서열로서 실질적으로 상기 각 단백질과 동일하거나 상응하는 효능을 나타내는 단백질을 나타내는 아미노산 서열이라면 제한없이 포함된다. 또한, 이러한 상동성으로 이루어진 아미노산 서열이라면, 일부 서열이 결실, 변형, 치환 또는 부가된 아미노산 서열도 본 발명의 범위 내에 포함됨은 자명하다.
본 명세서에서 사용한 용어, "CDCP1"은 CUB domain-containing protein 1의 약자로서, 2 개의 CUB 도메인을 포함하는 큰 세포외 도메인(extracellular domain, ECD) 및 더 작은 세포내 도메인(intracellular domain, ICD)로 이루어진 140 kD의 분자량로 이루어진 막관통 당단백질일 수 있다. 생체 내에서 상기 CDCP1은 정상적인 생리학적 환경에서는 절단되지 않지만, 종양 생성 또는 조직 손상 동안에는 절단이 유도될 수 있다.
상기 CDCP1은 서열번호 2의 아미노산 서열일 수 있고, 상기 서열과 97% 이상, 구체적으로는 98% 이상, 보다 구체적으로는 99% 이상의 상동성을 갖는 아미노산 서열을 포함할 수 있다.
본 발명의 일 구체예에서, 상기 개체로부터 채취한 혈액 시료를 이용한 암 전이 진단용 조성물은 ABCA1, IDOL, EpCAM, SQLE 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 물질을 추가로 포함할 수 있다.
본 명세서에서 사용한 용어, "ABCA1"은 ATP-binding cassette transporter 1의 약자로서, cholesterol efflux regulatory protein(CERP)으로도 불리며, 세포 콜레스테롤 및 인지질 항상성의 주요 조절제로 알려져 있다.
상기 ABCA1는 서열번호 3의 아미노산 서열일 수 있고, 상기 서열과 97% 이상, 구체적으로는 98% 이상, 보다 구체적으로는 99% 이상의 상동성을 갖는 아미노산 서열을 포함할 수 있다.
본 명세서에서 사용한 용어, "IDOL"은 Increased Degradation of LDL Receptor Protein의 약자로서, LDL 수용체에 유비퀴네이션을 시키는 유비퀴틴 리가제로 알려져 있다.
상기 IDOL은 서열번호 4의 아미노산 서열일 수 있고, 상기 서열과 97% 이상, 구체적으로는 98% 이상, 보다 구체적으로는 99% 이상의 상동성을 갖는 아미노산 서열을 포함할 수 있다.
본 명세서에서 사용한 용어, "EpCAM"은 Epithelial cell adhesion molecule의 약자로서, 상피에서의 Ca2+-독립적 동형 세포-세포 접착을 중재하는 막관통 당단백질로 알려져 있다.
상기 EpCAM은 서열번호 5의 아미노산 서열일 수 있고, 상기 서열과 97% 이상, 구체적으로는 98% 이상, 보다 구체적으로는 99% 이상의 상동성을 갖는 아미노산 서열을 포함할 수 있다.
본 명세서에서 사용한 용어, "SQLE"은 squalene epoxidase의 약자로서, squalene monooxygenase로도 불린다. 산소와 NADPH를 사용하여 스쿠알렌(squalene)을 2,3-옥시도스쿠알렌(2,3-oxidosqualene)으로 산화시키는 효소로 알려져 있다. 또한, 상기 효소는 스테롤(sterol) 생합성에서 속도를 제한하는 효소 중 하나로서 스테롤 생합성 경로의 산소화 단계를 촉매하는 것으로 알려져 있다.
상기 SQLE는 서열번호 9의 아미노산 서열일 수 있고, 상기 서열과 97% 이상, 구체적으로는 98% 이상, 보다 구체적으로는 99% 이상의 상동성을 갖는 아미노산 서열을 포함할 수 있다.
본 발명의 상기 각 단백질을 코딩하는 유전자는 각 서열번호로 기재한 아미노산을 코딩하는 염기서열이고, 상기 서열과 97% 이상, 구체적으로는 98% 이상, 보다 구체적으로는 99% 이상의 상동성을 갖는 염기서열을 포함할 수 있다.
본 발명의 일 구체예에서, 상기 암은 고형암알 수 있고, 상기 고형암은 대장암, 폐암, 유방암, 췌장암, 신장암, 간암, 위암, 자궁암 및 전립선암으로 이루어진 군에서 선택되는 것일 수 있으나, 이에 제한되지 않는다. 또한, 바람직하게는, 상기 암은 대장암일 수 있다.
본 명세서에서 사용한 용어 "단백질의 수준을 측정하는 물질"이란, 시료에 포함된 표적 단백질의 수준을 측정하는 방법에 사용되는 물질을 의미할 수 있다.
상기 단백질의 수준을 측정하는 물질은 상기 단백질에 특이적으로 결합하는 항체일 수 있다. 구체적으로 상기 물질은 웨스턴 블럿(western blotting), ELISA(enzyme linked immunosorbent assay), 방사선면역분석(RIA: Radioimmunoassay), 방사 면역 확산법(radioimmunodiffusion), 오우크테로니(Ouchterlony) 면역 확산법, 로케트 면역전기영동(rocket immunoelectrophoresis), 면역조직화학염색법(immunohistochemical staining), 면역침전 분석법(Immunoprecipitation Assay), 보체 고정 분석법(Complement Fixation Assay), 면역형광법(immunofluorescence), 면역크로마토그래피법(immunochromatography), FACS(fluorescenceactivated cell sorter analysis) 및 단백질 칩 분석법(protein chip technology assay) 등의 방법에 사용되는 항체를 포함할 수 있으나, 이에 제한되지 않는다.
상기 "항체"는 단백질 또는 펩티드 분자의 항원성 부위에 특이적으로 결합할 수 있는 단백질성 분자를 의미한다. 상기 항체의 형태는 특별히 제한되지 않으며 폴리클로날 항체, 모노클로날 항체 또는 항원 결합성로 이루어진 것이면 그것의 일부도 본 발명의 항체에 포함되고 모든 면역 글로불린 항체가 포함될 수 있다. 뿐만 아니라, 인간화 항체 등의 특수 항체를 포함할 수도 있다. 아울러, 상기 항체는 2개의 전체 길이의 경쇄 및 2개의 전체 길이의 중쇄를 가지는 완전한 형태뿐만 아니라 항체 분자의 기능적인 단편을 포함한다. 항체 분자의 기능적인 단편이란 적어도 항원 결합 기능을 보유하고 있는 단편을 의미하며 Fab, F(ab'), F(ab')2 및 Fv 등이 될 수 있다.
본 명세서에서 사용한 용어, "유전자의 발현 수준을 측정하는 물질"이란, 시료에 포함된 표적 유전자의 발현여부를 확인하기 위하여, 상기 표적 유전자로부터 전사된 mRNA의 수준을 측정하는 방법에 사용되는 물질을 의미할 수 있다. 구체적으로 상기 물질은 PCR, RT-PCR, 정량 실시간 PCR(quantified real time PCR), 경쟁적 RT-PCR(Competitive RT-PCR), 실시간 RT-PCR(real time quantitative RT-PCR), RNase 보호 분석법(RPA; RNase protection assay), 노던 블럿팅(Northern blotting), DNA 칩 분석법 등의 방법에 사용되는 표적 유전자 또는 이의 유전자 발현물에 특이적으로 결합할 수 있는 프라이머 또는 프로브를 포함할 수 있으나, 특별히 이에 제한되지는 않는다. 또한, 상기 유전자 발현물은 mRNA일 수 있다.
상기 "프라이머"는 표적 핵산 서열로 상보적인 템플레이트(template)와 염기쌍(base pair)을 형성할 수 있고 템플레이트 가닥 복사를 위한 시작 지점으로 기능을 하는 짧은 핵산 서열을 의미한다. 프라이머는 짧은 자유 3말단 수화기(free 3' hydroxyl group)를 가질 수 있다. 프라이머는 적절한 완충용액 및 온도에서 중합반응(즉, DNA 폴리머레이즈 또는 역전사효소)을 위한 시약 및 상이한 4가지 뉴클레오사이드 트리포스페이트의 존재하에서 DNA 합성이 개시될 수 있다. 또한, 상기 프라이머는 15 내지 35개의 뉴클레오타이드로 구성될 수 있으며, 20 내지 25개의 뉴클레오타이드로 구성될 수 있다.
상기 "프로브"는 CD110, CDCP1, ABCA1, IDOL, EpCAM, SQLE 및 이의 조합으로 이루어진 군에서 선택되는 하나의 유전자와 상보적으로 결합할 수 있는 프로브가 될 수 있고, 상기 각 유전자와 상보적으로 결합할 수 있는 한, 상기 프로브의 뉴클레오티드 서열은 제한되지 않는다. 상기 프로브는 15 내지 35개의 뉴클레오타이드로 구성될 수 있으며, 20 내지 25개의 뉴클레오타이드로 구성될 수 있다.
본 발명의 다른 측면은, 상기 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 조성물을 포함하는, 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 키트를 제공한다.
상기 키트는 PCR(polymerase chain reaction) 키트, RT-PCR(Reverse transcription polymerase chain reaction) 키트, DNA 칩 키트, ELISA(Enzyme-linked immunosorbent assay) 키트, 단백질 칩 키트, 래피드(rapid) 키트 또는 MRM(Multiple reaction monitoring) 키트일 수 있다. 구체적으로, 유전자의 mRNA 발현 수준을 측정하기 위한 키트는 RT-PCR을 수행하기 위해 필요한 필수 요소를 포함하는 키트일 수 있다. RT-PCR 키트는, CD110, CDCP1, ABCA1, IDOL, EpCAM 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질을 코딩하는 유전자에 대한 특이적인 각각의 프라이머 쌍 외에도 테스트 튜브 또는 다른 적절한 컨테이너, 반응 완충액(pH 및 마그네슘 농도는 다양), 데옥시뉴클레오타이드(dNTPs), Taq-폴리머라아제 및 역전사효소와 같은 효소, DNase, RNAse 억제제, DEPC-수(DEPC-water), 멸균수 등을 포함할 수 있다. 또한, 정량 대조군으로 사용되는 유전자에 특이적인 프라이머 쌍을 포함할 수 있다.
또한, 본 발명의 키트는 DNA 칩 분석법을 수행하기 위해 필요한 필수 요소를 포함할 수 있다. DNA 칩 분석용 키트는, 유전자 또는 그의 단편에 해당하는 cDNA가 프로브로 부착되어 있는 기판, 및 형광표식 프로브를 제작하기 위한 시약, 제제, 효소 등을 포함할 수 있다. 또한, 기판은 정량 대조군 유전자 또는 그의 단편에 해당하는 cDNA를 포함할 수 있다.
또한, 본 발명의 키트는 CD110, CDCP1, ABCA1, IDOL, EpCAM, SQLE 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질을 코딩하는 유전자로부터 발현되는 단백질의 수준을 측정하기 위한 단백질 칩 분석용 키트가 될 수 있는데, 상기 키트는 특별히 이에 제한되지 않으나, 항체의 면역학적 검출을 위하여 기재, 적당한 완충용액, 발색 효소 또는 형광물질로 표지된 2차 항체, 발색 기질 등을 포함할 수 있다. 상기 기재는 특별히 이에 제한되지 않으나 니트로셀룰로오스 막, 폴리비닐 수지로 합성된 96 웰 플레이트, 폴리스티렌 수지로 합성된 96 웰 플레이트 및 유리로 된 슬라이드글라스 등이 이용될 수 있고, 발색효소는 특별히 이에 제한되지 않으나 퍼옥시다아제(peroxidase), 알칼라인 포스파타아제(Alkaline Phosphatase)가 사용될 수 있으며, 형광물질은 특별히 이에 제한되지 않으나 FITC, RITC 등이 될 수 있고, 발색 기질액은 특별히 이에 제한되지 않으나 ABTS(2,2'-아지노-비스(3-에틸벤조티아졸린-6-설폰산)) 또는 OPD(o-페닐렌디아민), TMB(테트라메틸 벤지딘)가 될 수 있다.
본 발명의 다른 측면은, 암이 발생한 개체로부터 분리된 혈액 시료에서 CD110 및 CDCP1으로 이루어진 군에서 선택되는 어느 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및 상기 측정된 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 높은 경우를 암 전이 상태로 판정하는 단계를 포함하는, 암 전이 진단을 위한 정보제공방법을 제공한다.
본 발명의 일 구체예에서, 상기 암 전이 진단을 위한 정보제공방법은 암이 발생한 개체로부터 분리된 혈액 시료에서 ABCA1, IDOL, EpCAM, SQLE 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계를 추가로 포함할 수 있다.
본 발명의 일 구체예에서, 상기 암 전이 진단을 위한 정보제공방법은 상기 측정된 ABCA1 및 SQLE로 이루어진 군에서 선택되는 어느 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 낮은 경우를 암 전이 상태로 판정하고, 상기 측정된 IDOL 및 EpCAM으로 이루어진 군에서 선택되는 어느 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 높은 경우를 암 전이 상태로 판정하는 단계를 추가로 포함할 수 있다.
본 명세서에서 사용한 용어, "암 전이"란, 암의 종양세포가 원래의 발생 장소로부터 이동하여 다른 장소에 정착하여 증식하는 것을 의미한다. 본 발명에서 상기 암은 고형암일 수 있고, 상기 고형암은 대장암, 폐암, 유방암, 췌장암, 신장암, 간암, 위암, 자궁암 및 전립선암으로 이루어진 군에서 선택되는 것일 수 있으며, 구체적으로는 대장암일 수 있으나, 이에 제한되지 않는다. 구체적으로, 대장암 세포는 정상세포와 달리 주위조직을 침범하면서 성장하기 때문에 혈관이나 림프관 등 튜브 형태의 구조물을 만나면 혈액이나 림프액 등을 타고 다른 곳으로 이동할 수 있다. 이렇게 이동하던 대장암 세포가 다른 장기나 조직에 자리를 잡으면 또 다시 세포분열을 하면서 성장하게 되는데 이것을 대장암의 전이라고 한다.
또한, 본 발명의 다른 측면은, 종양 치료를 받은 개체로부터 분리된 혈액 시료에서 CD110 및 CDCP1으로 이루어진 군에서 선택되는 어느 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및 상기 측정된 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 높은 경우를 암 재발 상태로 판정하는 단계를 포함하는, 암 재발 진단을 위한 정보제공방법을 제공한다.
본 발명의 일 구체예에서, 상기 암 재발 진단을 위한 정보제공방법은 종양 치료를 받은 개체로부터 분리된 혈액 시료에서 ABCA1, IDOL, EpCAM, SQLE 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계를 추가로 포함할 수 있다.
본 발명의 일 구체예에서, 상기 암 재발 진단을 위한 정보제공방법은 상기 측정된 ABCA1 및 SQLE로 이루어진 군에서 선택되는 어느 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 낮은 경우를 암 재발 상태로 판정하고, 상기 측정된 IDOL 및 EpCAM으로 이루어진 군에서 선택되는 어느 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 높은 경우를 암 재발 상태로 판정하는 단계를 추가로 포함할 수 있다.
본 발명에서 사용한 용어, "암 재발"은 종양 치료 후에 동일형의 종양이 다시 같은 부위에 발현되거나 다른 기관에 발생하는 경우를 의미한다. 본 발명에서 상기 암은 고형암일 수 있고, 상기 고형암은 대장암, 폐암, 유방암, 췌장암, 신장암, 간암, 위암, 자궁암 및 전립선암으로 이루어진 군에서 선택되는 것일 수 있으며, 구체적으로는 대장암일 수 있으나, 이에 제한되지 않는다.
본 발명의 일 구체예에서 상기 대장암 전이 또는 재발은 콜레스테롤에 의한 것일 수 있고, SQLE의 발현 저해에 의한 것일 수 있다.
본 발명의 일 실시예에서, 상기 SQLE의 발현 저해는 단백질의 수준 또는 유전자의 발현 수준을 저해시키는 물질에 의해 유도될 수 있으며, 구체적으로는 SQLE의 short hairpin RNA(shSQLE) 및 small interfering RNA(siSQLE) 등이 사용될 수 있으나, 이에 제한되지 않는다.
본 명세서에서 사용한 용어, "진단"은 병리 상태의 존재 또는 특징을 확인하는 것을 의미한다. 본 발명의 목적상, 진단은 암의 전이 여부 또는 전이 가능성 여부와 암의 재발 여부 또는 암의 재발 가능성 여부를 확인하는 것이다.
본 명세서에서 사용한 용어, "개체"란, 암이 발병되었음을 전제로 암이 전이되었거나 전이될 가능성이 있는 인간을 포함한 모든 동물을 의미할 수 있다. 상기 동물은 인간뿐만 아니라 이와 유사한 증상의 치료를 필요로 하는 소, 말, 양, 돼지, 염소, 낙타, 영양, 개, 고양이 등의 포유동물일 수 있으나, 이에 제한되지는 않는다.
본 발명의 일 구체예에서, 상기 암이 발생한 개체로부터 분리된 "혈액 시료"는 비침습적 방법에 의해 얻을 수 있는 시료를 대표하여 기재한 것이므로, 비침습적 방법에 의해 얻을 수 있는 시료라면 제한 없이 활용될 수 있다. 구체적으로, 상기 혈액 시료는 혈액 내 종양순환세포(CTC; Circulating Tumor Cell)를 포함할 수 있다.
본 발명의 다른 측면은, ABCA1 및 IDOL로 이루어진 군에서 선택되는 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 물질을 포함하는 암 전이 또는 재발 진단용 조성물을 제공한다.
상기 암 전이 또는 재발 진단용 조성물은 EpCAM, CD110, CDCP1, SQLE 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질 또는 이를 코딩하는 유전자를 추가로 포함할 수 있다.
본 발명의 다른 측면은 상기 암 전이 또는 재발 진단용 조성물을 포함하는 암 전이 또는 재발 진단용 키트를 제공한다.
본 발명의 다른 측면은, 암이 발생한 개체로부터 분리된 혈액 시료에서 ABCA1 및 IDOL로 이루어진 군에서 선택되는 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및 상기 측정된 ABCA1 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 낮은 경우를 암 전이 상태로 판정하고, 상기 측정된 IDOL 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 높은 경우를 암 전이 상태로 판정하는 단계를 포함하는, 암 전이 진단을 위한 정보제공방법을 제공한다.
본 발명의 일 구체예에서, 상기 암 전이 진단을 위한 정보제공방법은 암이 발생한 개체로부터 분리된 혈액 시료에서 EpCAM, CD110, CDCP1, SQLE 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및 상기 측정된 SQLE 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 낮은 경우를 암 전이 상태로 판정하고, 상기 측정된 EpCAM, CD110, CDCP1 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 높은 경우를 암 전이 상태로 판정하는 단계를 추가로 포함할 수 있다.
본 발명의 다른 측면은, 종양 치료를 받은 개체로부터 분리된 혈액 시료에서 ABCA1 및 IDOL로 이루어진 군에서 선택되는 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및 상기 측정된 ABCA1 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 낮은 경우를 암 재발 상태로 판정하고, 상기 측정된 IDOL 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 높은 경우를 암 재발 상태로 판정하는 단계를 포함하는, 암 재발 진단을 위한 정보제공방법을 제공한다.
본 발명의 일 구체예에서, 상기 암 재발 진단을 위한 정보제공방법은 종양 치료를 받은 개체로부터 분리된 혈액 시료에서 EpCAM, CD110, CDCP1, SQLE 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및 상기 측정된 SQLE 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 낮은 경우를 암 재발 상태로 판정하고, 상기 측정된 EpCAM, CD110, CDCP1 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 높은 경우를 암 재발 상태로 판정하는 단계를 추가로 포함할 수 있다.
본 명세서에서 사용한 용어, "시료"는 암이 발병된 환자로부터 분리되어 CD110, CDCP1, ABCA1, IDOL, EpCAM, SQLE 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질을 코딩하는 유전자의 발현 수준을 측정하는 직접적인 대상을 의미하며, 구체적으로 상기 시료는 혈액, 암세포 또는 암조직일 수 있고, 구체적으로는 혈액 내 순환종양세포일 수 있으나, 이에 제한되지 않는다.
본 명세서에서 사용한 용어, "순환종양세포"는 악성 종양 환자의 말초혈액에서 발견되는 종양세포로, 원발 종양 및 전이가 발생한 조직 모두로부터 기원될 수 있는 것으로 알려져 있다.
본 발명의 일 실시예에서, 대장암 세포주(HCT116 및 HT29)에 콜레스테롤 처리하면 순환종양세포와 같이 암줄기세포 마커(EpCAM) 및 암세포 마커(CD110 및 CDCP1)의 발현이 증가하고, SQLE의 발현이 감소한다는 점을 확인하였다(도 3a 및 도 3b 참조).
본 발명의 다른 실시예에서, 고콜레스테롤 식이 암 전이 동물모델 및/또는 SQLE의 발현이 억제된 암 전이 동물모델의 혈액 시료에서 암줄기세포 마커(EpCAM) 및 암세포 마커(CD110 및 CDCP1)의 발현이 증가하고, SQLE의 발현이 감소한다는 점을 확인하였다(도 6a 내지 도 6d 참조).
이와 같은 실험 결과는 암 전이 동물모델의혈액 중에 SQLE, EpCAM, CD110 및 CDCP1 마커를 갖는 순환 종양 세포가 존재함을 의미하며, 이는, 상기 SQLE, EpCAM, CD110 및 CDCP1로 이루어진 군에서 선택되는 하나 이상의 단백질 또는 이를 코딩하는 유전자가 암 전이 진단에 활용될 수 있음을 시사한다.
이하, 실시예를 통하여 본 발명을 보다 상세히 설명하고자 한다. 이들 실시예는 본 발명을 보다 구체적으로 설명하기 위한 것으로, 본 발명의 범위가 이들 실시예에 한정되는 것은 아니다.
실험예 1. 콜레스테롤 처리 또는 스쿠알렌 에폭시다아제(SQLE) 발현 저해에 의한 대장암 세포주의 생존 증가 확인
실험예 1.1. SQLE 발현 저해 물질의 제조
SQLE 유전자의 발현 억제에 의한 세포내 기능을 조사하기 위하여 SQLE 유전자의 염기서열 중에서 25개의 뉴클레오티드로 이루어진 siRNA(siSQLE)를 제작하였다. 대조 실험을 위한 siRNA로 siCont를 제작하였다.
SQLE의 염기 서열 및 아미노산 서열은 각각 서열번호 6 및 서열번호 9로 표시하였고, siCont 및 siSQLE의 뉴클레오티드 서열은 각각 서열번호 7 및 서열번호 8로 표시하였다.
실험예 1.2. 세포의 배양
콜레스테롤의 처리 또는 SQLE의 발현 저해에 의한 대장암 세포주의 생존력을 확인하기 위해 대장암 세포주인 HCT116 및 HT29 세포주를 배양하였다. 상기 세포주들을 각각 10% 우태아 혈청, 100 mg/ml 스트렙토마이신, 그리고 100 IU/ml 엠피실린을 함유한 배지를 이용하여 비부착성 플레이트(ultra-low attachment plates, Corning, USA)에서 72시간 동안 배양하였고, 배양 기간 동안 매일 콜레스테롤과 siRNA를 20 μM씩 세포주 시료에 처리하였다.
실험예 1.3. 세포 생존력 측정
배양이 종료된 세포주 시료를 40배 배율로 광학현미경으로 관찰하였고, 그 현미경 사진을 도 1에 도시하였다.
또한, 콜레스테롤의 처리 또는 SQLE의 발현 저해에 의한 대장암 세포주의 생존 증가를 통계적으로 확인하기 위해 MTT법을 기반으로 다음의 방법으로 수행하였다. 상기 실험예 1.2.에서 배양한 세포주를 96웰 플레이트로 옮기고 2 mg/ml MTT를 처리하여 2시간 동안 37℃에서 반응시킨 후 DMSO로 반응을 중단시켰다. Microplate reader(570 nm)로 흡광도를 읽은 후 퍼센트로 환산하여 세포의 사멸/생존을 측정하였다. 또한, 대조군인 콜레스테롤 미처리군과 20 μM siCont 처리군에 대해서도 동일한 방법으로 대장암 세포의 사멸/생존을 확인하였다. 그 결과, 콜레스테롤 및 siSQLE를 처리한 대장암 세포주에서는 대조군 대비 세포 생존율이 모두 유의하게 증가하였다(도 1).
도 1의 현미경 사진을 참조하면, 비부착성 플레이트에서 배양된 대장암 세포주에서는 세포 생존을 나타내는 세포 응집체 형성이 증가된 것이 관찰되었는데, 이는 콜레스테롤 및 siSQLE를 처리한 대장암 세포주에서 아노이키스(anoikis)가 잘 이루어지지 않았음을 의미한다.
아노이키스는 세포사멸의 한 형태로 세포가 세포기질에 부착되지 않거나 본래의 위치가 아닌 곳에 부착되었을 경우에 발생하는 세포 죽음을 의미하는데, 아노이키스에 대한 저항성을 획득한 세포는 부유 상태에서 생존 가능하거나 본래의 위치가 아닌 곳에서 생장이 가능하게 되어, 결과적으로, 암의 전이가 유도될 수 있다.
실험예 2. 콜레스테롤 처리에 따른 대장암 세포주에서 암세포 마커 및 콜레스테롤 유입 또는 방출 관련 단백질의 발현 확인
대장암 세포주(HCT116 및 HT29)를 비부착성 플레이트에서 20 μM의 콜레스테롤을 매일 처리하면서 72시간 동안 배양하였다. 배양이 종료된 후에, 정량적 중합효소 연쇄반응(Quantitative PCR) 분석을 이용하여 암세포 마커(CD110 및 CDCP1), 콜레스테롤 유입 관련 단백질(IDOL) 및 콜레스테롤 방출 관련 단백질(ABCA1)의 유전자 발현 정도를 확인하였고, 그 결과를 도 2에 나타내었다.
도 2를 참조하면, 콜레스테롤을 처리한 HCT116 대장암 세포주에서는 콜레스테롤 미처리 대조군 대비 SQLE 및 ABCA1의 발현량이 유의하게 감소하였고, CD110 및 IDOL의 발현량은 유의하게 증가하였다. 또한, 콜레스테롤을 처리한 HT29 대장암 세포주에서는 콜레스테롤 미처리 대조군 대비 SQLE 및 ABCA1의 발현량이 유의하게 감소하였고, CDCP1 및 IDOL의 발현량은 유의하게 증가하였다.
실험예 3. 콜레스테롤 처리에 따른 대장암 세포주에서 암줄기세포 마커, 암세포 마커 및 SQLE의 발현 정도 확인
대장암 세포주(HCT116 또는 HT29)를 비부착성 플레이트에서 20 μM의 콜레스테롤을 매일 처리하면서 72시간 동안 배양한 후에 FACS 염색버퍼(PBS 완충액 중 0.05% BSA)로 3회 세척하였다. 세포를 수집하여 BD Cytofix Fixation 용액에 15분 동안 고정시키고, FACS 염색버퍼로 1회 세척하였다. 세척한 세포 펠렛을 BD Permeabilization 버퍼에 희석하여 5분 동안 반응시켰다. FACS 염색버퍼로 3회동안 세척한 후, 대조군(CD45), 암줄기세포 마커(EpCAM), 암세포 마커(CD110 및 CDCP1) 및 SQLE의 항체를 처리하여 60분 동안 반응시키고, 반응이 끝난 후에 FACS 염색버퍼로 세척한 후 유세포분석기(BD Biosciences)를 이용하여 EpCAM, CD110, CDCP1 및 SQLE의 발현 정도를 분석하였고, 대장암 세포주(HCT116 및 HT29)에서의 결과를 각각 도 3a 및 도 3b에 나타내었다. 사용된 항체는 표 1과 같다.
항체 | Catalog No. | 회사 |
CD45 | 555482 | BD Pharminogen |
EpCAM | 347199 | BD Biosciences |
CD110 | 562199 | BD Pharminogen |
CDCP1 | 324006 | Biolegend |
SQLE | sc-21791 | Santa Cruz |
그 결과, 도 3a 및 도 3b를 참조하면, 콜레스테롤을 처리한 대장암 세포주(HCT116 및 HT29)에서 EpCAM, CD110 및 CDCP1의 발현이 증가하고, SQLE의 발현이 감소하였다.
실험예 4.
in vivo
루시퍼라제법을 이용한 마우스 동물모델에서 콜레스테롤 처리 및 SQLE 발현 정도에 따른 암 전이 정도 확인
실험예 4.1. 암 전이 동물모델의 제조
암 전이 동물모델의 제조방법의 모식도를 도 4a에 나타내었다. 구체적으로, 마우스(SCID, Immune-deficient mice, 5주령)에 2% 고 콜레스테롤 식이를 30일간 매일 제공하여 마우스 혈청 내 콜레스테롤 수치가 높게 유지되도록 사육하였다. 대조군 마우스에는 일반 식이를 동일하게 제공하여 사육하였다.
한편, 정상 수준의 SQLE 유전자를 갖는 암 세포주(siCont)와 SQLE 유전자가 녹-아웃(knock-out)된 암 세포주(siSQLE)를 제조하였다. 상기 SQLE 유전자가 녹-아웃(knock-out)된 암 세포주는 HT29 또는 HCT116 세포주에 SQLE의 Mission shRNA 렌티바이러스 형질도입 입자(Sigma: TRCN0000046155, TRCN0000046157)를 감염시켜 수득하였다. 상기 암 세포주(5 x 106 cells/ml) 100 ㎕를 마우스(SCID, 5주령)에 등쪽으로 피하 주사하고, 종양 크기가 최대 직경 0.5 x 102 mm3에 도달하면 종양을 절제하였다. 한편, 종양 절제 후에 마우스를 120일 내지 130일간 더 사육하고 상태를 모니터링하였다.
상기 절제된 종양을 단일 세포 현탁액으로 분해한 다음, 세포 현탁액을 멸균 거즈와 70 ㎛ 세포 스트레이너(Corning, 352350)를 사용하여 연속적으로 여과하였다. 그 후, 유세포분석기를 통해 CDCP1 및 CD110이 풍부한 세포를 분류하고 세포의 밀도를 5 X 105 cells/ml로 농축하였다.
상기 농축한 CDCP1 및 CD110이 풍부한 세포 시료(5 X 105 cells/ml) 25 ㎕를 1% FBS(fetal bovine serum; Corning, 35-015-CV)를 포함하는 PBS(phosphate-buffered saline)에 현탁하여 상기 30일간 사육한 마우스에 개복 수술을 통해 대장에 주입함으로써 암 전이 동물모델 마우스를 제조하였다. 자발적(orthotopic) 전이 검정을 위해 마우스를 120일 내지 130일간 더 사육하고 상태를 모니터링 하였다.
상기 암 전이 동물모델 마우스는 (i) 콜레스테롤 미처리/siSQLE 군, (ii) 2% 콜레스테롤/siCont 군 및 (iii) 2% 콜레스테롤/siSQLE 군으로 나누어 실험군을 구성하였고, (iv) 콜레스테롤 미처리/siCont 군을 대조군으로 하였다.
모든 동물 실험은 KRIBB 생명윤리위원회의 승인을 받았다.
실험예 4.2. 암 전이 동물모델에서 혈청내 콜레스테롤 분석
상기 실험예 4.1.에서 제조된 암 전이 동물모델 마우스에 대해 2% 고 콜레스테롤 식이 또는 일반 식이를 제공하여 사육하면서 혈청내 콜레스테롤을 측정하였다(도 4b). 구체적으로, 도 4b에서 (1)은 5주간 일반 식이를 처리한 마우스의 혈청내 콜레스테롤을 측정한 것이고, (2)는 고 콜레스테롤 식이 또는 일반 식이를 제공한 마우스에 대해 상기 실험예 4.1.의 개복 수술 직전(약 9주)에 혈청 내 콜레스테롤을 측정한 것이며, (3)은 고 콜레스테롤 식이 또는 일반 식이를 제공한 마우스에 대해 연구가 완료된 시점(약 25주 내지 26주차)의 혈청 내 콜레스테롤을 측정한 것이다.
그 결과, 2% 콜레스테롤 식이를 공급한 마우스에서 9주차 이후 혈청 내 콜레스테롤 수치가 높음을 확인하였다.
실험예 4.3. 암 전이 동물모델에서 암 전이 정도 확인
상기 실험예 4.1.에서 제조된 암 전이 동물모델 마우스에 대해 암 세포를 주입한 후 30일, 60일, 90일 및 120일째에, ivis(In Vivo Imaging Systems; Perkin elemer)를 이용하여 암세포의 이동을 확인하였다(도 4c 내지 도 4f).
그 결과, 대조군에 비하여 2% 콜레스테롤 식이를 공급한 마우스 암 전이 정도가 유의하게 증가함을 확인하였다. 또한, 일반 식이를 제공하면서 SQLE의 발현을 억제한 마우스에서도 암 전이 정도가 유의하게 증가함을 확인하였다.
실험예 5.
in vivo
에서 콜레스테롤의 처리 및 SQLE의 발현 저해 정도에 따른 폐조직 내에서의 암세포 마커(CDCP1)의 수준 확인
상기 실험예 4.3.의 암 전이가 이루어진 암전이 마우스 모델(각 실험군 및 대조군에서 5마리씩)에서 폐조직을 채취하여 암세포 마커(CDCP1) 항체로 염색한 후 공초점형광현미경을 이용하여 이미지를 얻고, 이미지 제이 프로그램(Image J program)을 이용하여 양적 계산을 수행함으로써 폐조직으로의 암 전이 정도를 측정하였다. DAPI 항체(파란색)로 핵을 염색하였다. HT29를 이식한 암 전이 마우스 모델에 대한 결과를 도 5a에, HCT116를 이식한 암 전이 동물모델에 대한 결과를 도 5b에 나타내었다. 사용된 항체는 표 2와 같다.
항체 | Catalog No. | 회사 |
DAPI | RUO-564907 | BD Biosciences |
도 5a 및 도 5b를 참조하면, 대조군 대비 실험군에서 폐조직내 CDCP1의 발현이 현저하게 증가하였음을 확인하였다. 상기 CDCP1은 대장 유래 세포에 대한 마커이므로, CDCP1의 발현이 현저하게 증가된 폐조직은 대장암으로부터 전이가 이루어진 것임을 의미한다.
실험예 6. 암 전이 동물모델의 혈액 중에서 암줄기세포 마커 및 암세포 마커의 수준 확인
상기 실험예 4.1.에서 제조된 암 전이 동물모델의 혈액 시료에서 콜레스테롤의 처리 및 SQLE의 발현 저해 정도에 따른 암줄기세포 마커(EpCAM) 및 암세포 마커(CD110 및 CDCP1)의 수준을 확인하였다.
구체적으로, 상기 암 전이 동물모델의 실험군 및 대조군을 각각 2% 고 콜레스테롤 식이 및 일반 식이를 제공하여 사육하였다. 암 전이 동물모델에서 혈액을 채취하고, 채취한 혈액 시료에 혈액세포 마커(CD45), 암줄기세포 마커(EpCAM), 암세포 마커(CD110 및 CDCP1) 및 SQLE에 특이적인 항체를 처리하였다. 그 후 유세포분석기를 이용하여 EpCAM, CD110, CDCP1 및 SQLE의 발현 정도를 분석하였고(도 6a 및 도 6c), 이를 수치화하여 도 6b 및 도 6d에 나타내었다(*, p<0.05; **, p<0.01; ***, p<0.001). 사용된 항체는 상기 표 1과 같다.
그 결과, 도 6a 내지 도 6d를 참조하면, HT29를 이식한 암 전이 동물모델 실험군 및 HCT116를 이식한 암 전이 동물모델 실험군 모두에서 대조군 대비 EpCAM, CD110 및 CDCP1의 발현 수준이 증가하였고, SQLE의 발현 수준이 감소하였다.
이와 같은 실험 결과는 암 전이 동물모델의 혈액 중에 EpCAM, CD110 및 CDCP1 마커를 갖는 순환 종양 세포가 존재함을 의미한다.
<110> Korea Research Institute of Bioscience and Biotechnology
<120> A COMPOSITION FOR DIAGNOSING CANCER METASTASIS AND CANCER
RECURRENCE
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500 505 510
Ile Ala Thr Glu Val Trp Leu Ile Asn Lys Ser Met Glu Leu Leu Asp
515 520 525
Glu Arg Lys Phe Trp Ala Gly Ile Val Phe Thr Gly Ile Thr Pro Gly
530 535 540
Ser Ile Glu Leu Pro His His Val Lys Tyr Lys Ile Arg Met Asp Ile
545 550 555 560
Asp Asn Val Glu Arg Thr Asn Lys Ile Lys Asp Gly Tyr Trp Asp Pro
565 570 575
Gly Pro Arg Ala Asp Pro Phe Glu Asp Met Arg Tyr Val Trp Gly Gly
580 585 590
Phe Ala Tyr Leu Gln Asp Val Val Glu Gln Ala Ile Ile Arg Val Leu
595 600 605
Thr Gly Thr Glu Lys Lys Thr Gly Val Tyr Met Gln Gln Met Pro Tyr
610 615 620
Pro Cys Tyr Val Asp Asp Ile Phe Leu Arg Val Met Ser Arg Ser Met
625 630 635 640
Pro Leu Phe Met Thr Leu Ala Trp Ile Tyr Ser Val Ala Val Ile Ile
645 650 655
Lys Gly Ile Val Tyr Glu Lys Glu Ala Arg Leu Lys Glu Thr Met Arg
660 665 670
Ile Met Gly Leu Asp Asn Ser Ile Leu Trp Phe Ser Trp Phe Ile Ser
675 680 685
Ser Leu Ile Pro Leu Leu Val Ser Ala Gly Leu Leu Val Val Ile Leu
690 695 700
Lys Leu Gly Asn Leu Leu Pro Tyr Ser Asp Pro Ser Val Val Phe Val
705 710 715 720
Phe Leu Ser Val Phe Ala Val Val Thr Ile Leu Gln Cys Phe Leu Ile
725 730 735
Ser Thr Leu Phe Ser Arg Ala Asn Leu Ala Ala Ala Cys Gly Gly Ile
740 745 750
Ile Tyr Phe Thr Leu Tyr Leu Pro Tyr Val Leu Cys Val Ala Trp Gln
755 760 765
Asp Tyr Val Gly Phe Thr Leu Lys Ile Phe Ala Ser Leu Leu Ser Pro
770 775 780
Val Ala Phe Gly Phe Gly Cys Glu Tyr Phe Ala Leu Phe Glu Glu Gln
785 790 795 800
Gly Ile Gly Val Gln Trp Asp Asn Leu Phe Glu Ser Pro Val Glu Glu
805 810 815
Asp Gly Phe Asn Leu Thr Thr Ser Val Ser Met Met Leu Phe Asp Thr
820 825 830
Phe Leu Tyr Gly Val Met Thr Trp Tyr Ile Glu Ala Val Phe Pro Gly
835 840 845
Gln Tyr Gly Ile Pro Arg Pro Trp Tyr Phe Pro Cys Thr Lys Ser Tyr
850 855 860
Trp Phe Gly Glu Glu Ser Asp Glu Lys Ser His Pro Gly Ser Asn Gln
865 870 875 880
Lys Arg Ile Ser Glu Ile Cys Met Glu Glu Glu Pro Thr His Leu Lys
885 890 895
Leu Gly Val Ser Ile Gln Asn Leu Val Lys Val Tyr Arg Asp Gly Met
900 905 910
Lys Val Ala Val Asp Gly Leu Ala Leu Asn Phe Tyr Glu Gly Gln Ile
915 920 925
Thr Ser Phe Leu Gly His Asn Gly Ala Gly Lys Thr Thr Thr Met Ser
930 935 940
Ile Leu Thr Gly Leu Phe Pro Pro Thr Ser Gly Thr Ala Tyr Ile Leu
945 950 955 960
Gly Lys Asp Ile Arg Ser Glu Met Ser Thr Ile Arg Gln Asn Leu Gly
965 970 975
Val Cys Pro Gln His Asn Val Leu Phe Asp Met Leu Thr Val Glu Glu
980 985 990
His Ile Trp Phe Tyr Ala Arg Leu Lys Gly Leu Ser Glu Lys His Val
995 1000 1005
Lys Ala Glu Met Glu Gln Met Ala Leu Asp Val Gly Leu Pro Ser Ser
1010 1015 1020
Lys Leu Lys Ser Lys Thr Ser Gln Leu Ser Gly Gly Met Gln Arg Lys
1025 1030 1035 1040
Leu Ser Val Ala Leu Ala Phe Val Gly Gly Ser Lys Val Val Ile Leu
1045 1050 1055
Asp Glu Pro Thr Ala Gly Val Asp Pro Tyr Ser Arg Arg Gly Ile Trp
1060 1065 1070
Glu Leu Leu Leu Lys Tyr Arg Gln Gly Arg Thr Ile Ile Leu Ser Thr
1075 1080 1085
His His Met Asp Glu Ala Asp Val Leu Gly Asp Arg Ile Ala Ile Ile
1090 1095 1100
Ser His Gly Lys Leu Cys Cys Val Gly Ser Ser Leu Phe Leu Lys Asn
1105 1110 1115 1120
Gln Leu Gly Thr Gly Tyr Tyr Leu Thr Leu Val Lys Lys Asp Val Glu
1125 1130 1135
Ser Ser Leu Ser Ser Cys Arg Asn Ser Ser Ser Thr Val Ser Tyr Leu
1140 1145 1150
Lys Lys Glu Asp Ser Val Ser Gln Ser Ser Ser Asp Ala Gly Leu Gly
1155 1160 1165
Ser Asp His Glu Ser Asp Thr Leu Thr Ile Asp Val Ser Ala Ile Ser
1170 1175 1180
Asn Leu Ile Arg Lys His Val Ser Glu Ala Arg Leu Val Glu Asp Ile
1185 1190 1195 1200
Gly His Glu Leu Thr Tyr Val Leu Pro Tyr Glu Ala Ala Lys Glu Gly
1205 1210 1215
Ala Phe Val Glu Leu Phe His Glu Ile Asp Asp Arg Leu Ser Asp Leu
1220 1225 1230
Gly Ile Ser Ser Tyr Gly Ile Ser Glu Thr Thr Leu Glu Glu Ile Phe
1235 1240 1245
Leu Lys Val Ala Glu Glu Ser Gly Val Asp Ala Glu Thr Ser Asp Gly
1250 1255 1260
Thr Leu Pro Ala Arg Arg Asn Arg Arg Ala Phe Gly Asp Lys Gln Ser
1265 1270 1275 1280
Cys Leu Arg Pro Phe Thr Glu Asp Asp Ala Ala Asp Pro Asn Asp Ser
1285 1290 1295
Asp Ile Asp Pro Glu Ser Arg Glu Thr Asp Leu Leu Ser Gly Met Asp
1300 1305 1310
Gly Lys Gly Ser Tyr Gln Val Lys Gly Trp Lys Leu Thr Gln Gln Gln
1315 1320 1325
Phe Val Ala Leu Leu Trp Lys Arg Leu Leu Ile Ala Arg Arg Ser Arg
1330 1335 1340
Lys Gly Phe Phe Ala Gln Ile Val Leu Pro Ala Val Phe Val Cys Ile
1345 1350 1355 1360
Ala Leu Val Phe Ser Leu Ile Val Pro Pro Phe Gly Lys Tyr Pro Ser
1365 1370 1375
Leu Glu Leu Gln Pro Trp Met Tyr Asn Glu Gln Tyr Thr Phe Val Ser
1380 1385 1390
Asn Asp Ala Pro Glu Asp Thr Gly Thr Leu Glu Leu Leu Asn Ala Leu
1395 1400 1405
Thr Lys Asp Pro Gly Phe Gly Thr Arg Cys Met Glu Gly Asn Pro Ile
1410 1415 1420
Pro Asp Thr Pro Cys Gln Ala Gly Glu Glu Glu Trp Thr Thr Ala Pro
1425 1430 1435 1440
Val Pro Gln Thr Ile Met Asp Leu Phe Gln Asn Gly Asn Trp Thr Met
1445 1450 1455
Gln Asn Pro Ser Pro Ala Cys Gln Cys Ser Ser Asp Lys Ile Lys Lys
1460 1465 1470
Met Leu Pro Val Cys Pro Pro Gly Ala Gly Gly Leu Pro Pro Pro Gln
1475 1480 1485
Arg Lys Gln Asn Thr Ala Asp Ile Leu Gln Asp Leu Thr Gly Arg Asn
1490 1495 1500
Ile Ser Asp Tyr Leu Val Lys Thr Tyr Val Gln Ile Ile Ala Lys Ser
1505 1510 1515 1520
Leu Lys Asn Lys Ile Trp Val Asn Glu Phe Arg Tyr Gly Gly Phe Ser
1525 1530 1535
Leu Gly Val Ser Asn Thr Gln Ala Leu Pro Pro Ser Gln Glu Val Asn
1540 1545 1550
Asp Ala Ile Lys Gln Met Lys Lys His Leu Lys Leu Ala Lys Asp Ser
1555 1560 1565
Ser Ala Asp Arg Phe Leu Asn Ser Leu Gly Arg Phe Met Thr Gly Leu
1570 1575 1580
Asp Thr Lys Asn Asn Val Lys Val Trp Phe Asn Asn Lys Gly Trp His
1585 1590 1595 1600
Ala Ile Ser Ser Phe Leu Asn Val Ile Asn Asn Ala Ile Leu Arg Ala
1605 1610 1615
Asn Leu Gln Lys Gly Glu Asn Pro Ser His Tyr Gly Ile Thr Ala Phe
1620 1625 1630
Asn His Pro Leu Asn Leu Thr Lys Gln Gln Leu Ser Glu Val Ala Leu
1635 1640 1645
Met Thr Thr Ser Val Asp Val Leu Val Ser Ile Cys Val Ile Phe Ala
1650 1655 1660
Met Ser Phe Val Pro Ala Ser Phe Val Val Phe Leu Ile Gln Glu Arg
1665 1670 1675 1680
Val Ser Lys Ala Lys His Leu Gln Phe Ile Ser Gly Val Lys Pro Val
1685 1690 1695
Ile Tyr Trp Leu Ser Asn Phe Val Trp Asp Met Cys Asn Tyr Val Val
1700 1705 1710
Pro Ala Thr Leu Val Ile Ile Ile Phe Ile Cys Phe Gln Gln Lys Ser
1715 1720 1725
Tyr Val Ser Ser Thr Asn Leu Pro Val Leu Ala Leu Leu Leu Leu Leu
1730 1735 1740
Tyr Gly Trp Ser Ile Thr Pro Leu Met Tyr Pro Ala Ser Phe Val Phe
1745 1750 1755 1760
Lys Ile Pro Ser Thr Ala Tyr Val Val Leu Thr Ser Val Asn Leu Phe
1765 1770 1775
Ile Gly Ile Asn Gly Ser Val Ala Thr Phe Val Leu Glu Leu Phe Thr
1780 1785 1790
Asp Asn Lys Leu Asn Asn Ile Asn Asp Ile Leu Lys Ser Val Phe Leu
1795 1800 1805
Ile Phe Pro His Phe Cys Leu Gly Arg Gly Leu Ile Asp Met Val Lys
1810 1815 1820
Asn Gln Ala Met Ala Asp Ala Leu Glu Arg Phe Gly Glu Asn Arg Phe
1825 1830 1835 1840
Val Ser Pro Leu Ser Trp Asp Leu Val Gly Arg Asn Leu Phe Ala Met
1845 1850 1855
Ala Val Glu Gly Val Val Phe Phe Leu Ile Thr Val Leu Ile Gln Tyr
1860 1865 1870
Arg Phe Phe Ile Arg Pro Arg Pro Val Asn Ala Lys Leu Ser Pro Leu
1875 1880 1885
Asn Asp Glu Asp Glu Asp Val Arg Arg Glu Arg Gln Arg Ile Leu Asp
1890 1895 1900
Gly Gly Gly Gln Asn Asp Ile Leu Glu Ile Lys Glu Leu Thr Lys Ile
1905 1910 1915 1920
Tyr Arg Arg Lys Arg Lys Pro Ala Val Asp Arg Ile Cys Val Gly Ile
1925 1930 1935
Pro Pro Gly Glu Cys Phe Gly Leu Leu Gly Val Asn Gly Ala Gly Lys
1940 1945 1950
Ser Ser Thr Phe Lys Met Leu Thr Gly Asp Thr Thr Val Thr Arg Gly
1955 1960 1965
Asp Ala Phe Leu Asn Lys Asn Ser Ile Leu Ser Asn Ile His Glu Val
1970 1975 1980
His Gln Asn Met Gly Tyr Cys Pro Gln Phe Asp Ala Ile Thr Glu Leu
1985 1990 1995 2000
Leu Thr Gly Arg Glu His Val Glu Phe Phe Ala Leu Leu Arg Gly Val
2005 2010 2015
Pro Glu Lys Glu Val Gly Lys Val Gly Glu Trp Ala Ile Arg Lys Leu
2020 2025 2030
Gly Leu Val Lys Tyr Gly Glu Lys Tyr Ala Gly Asn Tyr Ser Gly Gly
2035 2040 2045
Asn Lys Arg Lys Leu Ser Thr Ala Met Ala Leu Ile Gly Gly Pro Pro
2050 2055 2060
Val Val Phe Leu Asp Glu Pro Thr Thr Gly Met Asp Pro Lys Ala Arg
2065 2070 2075 2080
Arg Phe Leu Trp Asn Cys Ala Leu Ser Val Val Lys Glu Gly Arg Ser
2085 2090 2095
Val Val Leu Thr Ser His Ser Met Glu Glu Cys Glu Ala Leu Cys Thr
2100 2105 2110
Arg Met Ala Ile Met Val Asn Gly Arg Phe Arg Cys Leu Gly Ser Val
2115 2120 2125
Gln His Leu Lys Asn Arg Phe Gly Asp Gly Tyr Thr Ile Val Val Arg
2130 2135 2140
Ile Ala Gly Ser Asn Pro Asp Leu Lys Pro Val Gln Asp Phe Phe Gly
2145 2150 2155 2160
Leu Ala Phe Pro Gly Ser Val Leu Lys Glu Lys His Arg Asn Met Leu
2165 2170 2175
Gln Tyr Gln Leu Pro Ser Ser Leu Ser Ser Leu Ala Arg Ile Phe Ser
2180 2185 2190
Ile Leu Ser Gln Ser Lys Lys Arg Leu His Ile Glu Asp Tyr Ser Val
2195 2200 2205
Ser Gln Thr Thr Leu Asp Gln Val Phe Val Asn Phe Ala Lys Asp Gln
2210 2215 2220
Ser Asp Asp Asp His Leu Lys Asp Leu Ser Leu His Lys Asn Gln Thr
2225 2230 2235 2240
Val Val Asp Val Ala Val Leu Thr Ser Phe Leu Gln Asp Glu Lys Val
2245 2250 2255
Lys Glu Ser Tyr Val
2260
<210> 4
<211> 445
<212> PRT
<213> Artificial Sequence
<220>
<223> IDOL protein
<400> 4
Met Leu Cys Tyr Val Thr Arg Pro Asp Ala Val Leu Met Glu Val Glu
1 5 10 15
Val Glu Ala Lys Ala Asn Gly Glu Asp Cys Leu Asn Gln Val Cys Arg
20 25 30
Arg Leu Gly Ile Ile Glu Val Asp Tyr Phe Gly Leu Gln Phe Thr Gly
35 40 45
Ser Lys Gly Glu Ser Leu Trp Leu Asn Leu Arg Asn Arg Ile Ser Gln
50 55 60
Gln Met Asp Gly Leu Ala Pro Tyr Arg Leu Lys Leu Arg Val Lys Phe
65 70 75 80
Phe Val Glu Pro His Leu Ile Leu Gln Glu Gln Thr Arg His Ile Phe
85 90 95
Phe Leu His Ile Lys Glu Ala Leu Leu Ala Gly His Leu Leu Cys Ser
100 105 110
Pro Glu Gln Ala Val Glu Leu Ser Ala Leu Leu Ala Gln Thr Lys Phe
115 120 125
Gly Asp Tyr Asn Gln Asn Thr Ala Lys Tyr Asn Tyr Glu Glu Leu Cys
130 135 140
Ala Lys Glu Leu Ser Ser Ala Thr Leu Asn Ser Ile Val Ala Lys His
145 150 155 160
Lys Glu Leu Glu Gly Thr Ser Gln Ala Ser Ala Glu Tyr Gln Val Leu
165 170 175
Gln Ile Val Ser Ala Met Glu Asn Tyr Gly Ile Glu Trp His Ser Val
180 185 190
Arg Asp Ser Glu Gly Gln Lys Leu Leu Ile Gly Val Gly Pro Glu Gly
195 200 205
Ile Ser Ile Cys Lys Asp Asp Phe Ser Pro Ile Asn Arg Ile Ala Tyr
210 215 220
Pro Val Val Gln Met Ala Thr Gln Ser Gly Lys Asn Val Tyr Leu Thr
225 230 235 240
Val Thr Lys Glu Ser Gly Asn Ser Ile Val Leu Leu Phe Lys Met Ile
245 250 255
Ser Thr Arg Ala Ala Ser Gly Leu Tyr Arg Ala Ile Thr Glu Thr His
260 265 270
Ala Phe Tyr Arg Cys Asp Thr Val Thr Ser Ala Val Met Met Gln Tyr
275 280 285
Ser Arg Asp Leu Lys Gly His Leu Ala Ser Leu Phe Leu Asn Glu Asn
290 295 300
Ile Asn Leu Gly Lys Lys Tyr Val Phe Asp Ile Lys Arg Thr Ser Lys
305 310 315 320
Glu Val Tyr Asp His Ala Arg Arg Ala Leu Tyr Asn Ala Gly Val Val
325 330 335
Asp Leu Val Ser Arg Asn Asn Gln Ser Pro Ser His Ser Pro Leu Lys
340 345 350
Ser Ser Glu Ser Ser Met Asn Cys Ser Ser Cys Glu Gly Leu Ser Cys
355 360 365
Gln Gln Thr Arg Val Leu Gln Glu Lys Leu Arg Lys Leu Lys Glu Ala
370 375 380
Met Leu Cys Met Val Cys Cys Glu Glu Glu Ile Asn Ser Thr Phe Cys
385 390 395 400
Pro Cys Gly His Thr Val Cys Cys Glu Ser Cys Ala Ala Gln Leu Gln
405 410 415
Ser Cys Pro Val Cys Arg Ser Arg Val Glu His Val Gln His Val Tyr
420 425 430
Leu Pro Thr His Thr Ser Leu Leu Asn Leu Thr Val Ile
435 440 445
<210> 5
<211> 314
<212> PRT
<213> Artificial Sequence
<220>
<223> EpCAM protein
<400> 5
Met Ala Pro Pro Gln Val Leu Ala Phe Gly Leu Leu Leu Ala Ala Ala
1 5 10 15
Thr Ala Thr Phe Ala Ala Ala Gln Glu Glu Cys Val Cys Glu Asn Tyr
20 25 30
Lys Leu Ala Val Asn Cys Phe Val Asn Asn Asn Arg Gln Cys Gln Cys
35 40 45
Thr Ser Val Gly Ala Gln Asn Thr Val Ile Cys Ser Lys Leu Ala Ala
50 55 60
Lys Cys Leu Val Met Lys Ala Glu Met Asn Gly Ser Lys Leu Gly Arg
65 70 75 80
Arg Ala Lys Pro Glu Gly Ala Leu Gln Asn Asn Asp Gly Leu Tyr Asp
85 90 95
Pro Asp Cys Asp Glu Ser Gly Leu Phe Lys Ala Lys Gln Cys Asn Gly
100 105 110
Thr Ser Met Cys Trp Cys Val Asn Thr Ala Gly Val Arg Arg Thr Asp
115 120 125
Lys Asp Thr Glu Ile Thr Cys Ser Glu Arg Val Arg Thr Tyr Trp Ile
130 135 140
Ile Ile Glu Leu Lys His Lys Ala Arg Glu Lys Pro Tyr Asp Ser Lys
145 150 155 160
Ser Leu Arg Thr Ala Leu Gln Lys Glu Ile Thr Thr Arg Tyr Gln Leu
165 170 175
Asp Pro Lys Phe Ile Thr Ser Ile Leu Tyr Glu Asn Asn Val Ile Thr
180 185 190
Ile Asp Leu Val Gln Asn Ser Ser Gln Lys Thr Gln Asn Asp Val Asp
195 200 205
Ile Ala Asp Val Ala Tyr Tyr Phe Glu Lys Asp Val Lys Gly Glu Ser
210 215 220
Leu Phe His Ser Lys Lys Met Asp Leu Thr Val Asn Gly Glu Gln Leu
225 230 235 240
Asp Leu Asp Pro Gly Gln Thr Leu Ile Tyr Tyr Val Asp Glu Lys Ala
245 250 255
Pro Glu Phe Ser Met Gln Gly Leu Lys Ala Gly Val Ile Ala Val Ile
260 265 270
Val Val Val Val Ile Ala Val Val Ala Gly Ile Val Val Leu Val Ile
275 280 285
Ser Arg Lys Lys Arg Met Ala Lys Tyr Glu Lys Ala Glu Ile Lys Glu
290 295 300
Met Gly Glu Met His Arg Glu Leu Asn Ala
305 310
<210> 6
<211> 1725
<212> DNA
<213> Artificial Sequence
<220>
<223> Squalene Epoxidase - Homo sapiens
<400> 6
atgtggactt ttctgggcat tgccactttc acctattttt ataagaagtt cggggacttc 60
atcactttgg ccaacaggga ggtcctgttg tgcgtgctgg tgttcctctc gctgggcctg 120
gtgctctcct accgctgtcg ccaccgaaac gggggtctcc tcgggcgcca gcagagcggc 180
tcccagttcg ccctcttctc ggatattctc tcaggcctgc ctttcattgg cttcttctgg 240
gccaaatccc cccctgaatc agaaaataag gagcagctcg aggccaggag gcgcagaaaa 300
ggaaccaata tttcagaaac aagcttaata ggaacagctg cctgtacatc aacatcttct 360
cagaatgacc cagaagttat catcgtggga gctggcgtgc ttggctctgc tttggcagct 420
gtgctttcca gagatggaag aaaggtgaca gtcattgaga gagacttaaa agagcctgac 480
agaatagttg gagaattcct gcagccgggt ggttatcatg ttctcaaaga ccttggtctt 540
ggagatacag tggaaggtct tgatgcccag gttgtaaatg gttacatgat tcatgatcag 600
gaaagcaaat cagaggttca gattccttac cctctgtcag aaaacaatca agtgcagagt 660
ggaagagctt tccatcacgg aagattcatc atgagtctcc ggaaagcagc tatggcagag 720
cccaatgcaa agtttattga aggtgttgtg ttacagttat tagaggaaga tgatgttgtg 780
atgggagttc agtacaagga taaagagact ggagatatca aggaactcca tgctccactg 840
actgttgttg cagatgggct tttctccaag ttcaggaaaa gcctggtctc caataaagtt 900
tctgtatcat ctcattttgt tggctttctt atgaagaatg caccacagtt taaagcaaat 960
catgctgaac ttattttagc taacccgagt ccagttctca tctaccagat ttcatccagt 1020
gaaactcgag tacttgttga cattagagga gaaatgccaa ggaatttaag agaatacatg 1080
gttgaaaaaa tttacccaca aatacctgat cacctgaaag aaccattctt agaagccact 1140
gacaattctc atctgaggtc catgccagca agcttccttc ctccttcatc agtgaagaaa 1200
cgaggtgttc ttcttttggg agacgcatat aatatgaggc atccacttac tggtggagga 1260
atgactgttg cttttaaaga tataaaacta tggagaaaac tgctaaaggg tatccctgac 1320
ctttatgatg atgcagctat tttcgaggcc aaaaaatcat tttactgggc aagaaaaaca 1380
tctcattcct ttgtcgtgaa tatccttgct caggctcttt atgaattatt ttctgccaca 1440
gatgattccc tgcatcaact aagaaaagcc tgttttcttt atttcaaact tggtggcgaa 1500
tgtgttgcgg gtcctgttgg gctgctttct gtattgtctc ctaaccctct agttttaatt 1560
ggacacttct ttgctgttgc aatctatgcc gtgtattttt gctttaagtc agaaccttgg 1620
attacaaaac ctcgagccct tctcagtagt ggtgctgtat tgtacaaagc gtgttctgta 1680
atatttcctc taatttactc agaaatgaag tatatggttc attaa 1725
<210> 7
<211> 21
<212> RNA
<213> Artificial Sequence
<220>
<223> siCont
<400> 7
augaacguga auugcucaat t 21
<210> 8
<211> 25
<212> RNA
<213> Artificial Sequence
<220>
<223> siSQLE
<400> 8
gcagagccca atgcaaagtt tdtdt 25
<210> 9
<211> 574
<212> PRT
<213> Artificial Sequence
<220>
<223> SQLE protein
<400> 9
Met Trp Thr Phe Leu Gly Ile Ala Thr Phe Thr Tyr Phe Tyr Lys Lys
1 5 10 15
Phe Gly Asp Phe Ile Thr Leu Ala Asn Arg Glu Val Leu Leu Cys Val
20 25 30
Leu Val Phe Leu Ser Leu Gly Leu Val Leu Ser Tyr Arg Cys Arg His
35 40 45
Arg Asn Gly Gly Leu Leu Gly Arg Gln Gln Ser Gly Ser Gln Phe Ala
50 55 60
Leu Phe Ser Asp Ile Leu Ser Gly Leu Pro Phe Ile Gly Phe Phe Trp
65 70 75 80
Ala Lys Ser Pro Pro Glu Ser Glu Asn Lys Glu Gln Leu Glu Ala Arg
85 90 95
Arg Arg Arg Lys Gly Thr Asn Ile Ser Glu Thr Ser Leu Ile Gly Thr
100 105 110
Ala Ala Cys Thr Ser Thr Ser Ser Gln Asn Asp Pro Glu Val Ile Ile
115 120 125
Val Gly Ala Gly Val Leu Gly Ser Ala Leu Ala Ala Val Leu Ser Arg
130 135 140
Asp Gly Arg Lys Val Thr Val Ile Glu Arg Asp Leu Lys Glu Pro Asp
145 150 155 160
Arg Ile Val Gly Glu Phe Leu Gln Pro Gly Gly Tyr His Val Leu Lys
165 170 175
Asp Leu Gly Leu Gly Asp Thr Val Glu Gly Leu Asp Ala Gln Val Val
180 185 190
Asn Gly Tyr Met Ile His Asp Gln Glu Ser Lys Ser Glu Val Gln Ile
195 200 205
Pro Tyr Pro Leu Ser Glu Asn Asn Gln Val Gln Ser Gly Arg Ala Phe
210 215 220
His His Gly Arg Phe Ile Met Ser Leu Arg Lys Ala Ala Met Ala Glu
225 230 235 240
Pro Asn Ala Lys Phe Ile Glu Gly Val Val Leu Gln Leu Leu Glu Glu
245 250 255
Asp Asp Val Val Met Gly Val Gln Tyr Lys Asp Lys Glu Thr Gly Asp
260 265 270
Ile Lys Glu Leu His Ala Pro Leu Thr Val Val Ala Asp Gly Leu Phe
275 280 285
Ser Lys Phe Arg Lys Ser Leu Val Ser Asn Lys Val Ser Val Ser Ser
290 295 300
His Phe Val Gly Phe Leu Met Lys Asn Ala Pro Gln Phe Lys Ala Asn
305 310 315 320
His Ala Glu Leu Ile Leu Ala Asn Pro Ser Pro Val Leu Ile Tyr Gln
325 330 335
Ile Ser Ser Ser Glu Thr Arg Val Leu Val Asp Ile Arg Gly Glu Met
340 345 350
Pro Arg Asn Leu Arg Glu Tyr Met Val Glu Lys Ile Tyr Pro Gln Ile
355 360 365
Pro Asp His Leu Lys Glu Pro Phe Leu Glu Ala Thr Asp Asn Ser His
370 375 380
Leu Arg Ser Met Pro Ala Ser Phe Leu Pro Pro Ser Ser Val Lys Lys
385 390 395 400
Arg Gly Val Leu Leu Leu Gly Asp Ala Tyr Asn Met Arg His Pro Leu
405 410 415
Thr Gly Gly Gly Met Thr Val Ala Phe Lys Asp Ile Lys Leu Trp Arg
420 425 430
Lys Leu Leu Lys Gly Ile Pro Asp Leu Tyr Asp Asp Ala Ala Ile Phe
435 440 445
Glu Ala Lys Lys Ser Phe Tyr Trp Ala Arg Lys Thr Ser His Ser Phe
450 455 460
Val Val Asn Ile Leu Ala Gln Ala Leu Tyr Glu Leu Phe Ser Ala Thr
465 470 475 480
Asp Asp Ser Leu His Gln Leu Arg Lys Ala Cys Phe Leu Tyr Phe Lys
485 490 495
Leu Gly Gly Glu Cys Val Ala Gly Pro Val Gly Leu Leu Ser Val Leu
500 505 510
Ser Pro Asn Pro Leu Val Leu Ile Gly His Phe Phe Ala Val Ala Ile
515 520 525
Tyr Ala Val Tyr Phe Cys Phe Lys Ser Glu Pro Trp Ile Thr Lys Pro
530 535 540
Arg Ala Leu Leu Ser Ser Gly Ala Val Leu Tyr Lys Ala Cys Ser Val
545 550 555 560
Ile Phe Pro Leu Ile Tyr Ser Glu Met Lys Tyr Met Val His
565 570
Claims (27)
- CD110 및 CDCP1으로 이루어진 군에서 선택되는 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 물질을 포함하는, 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 조성물.
- 제1항에 있어서,
상기 CD110은 서열번호 1의 아미노산 서열로 이루어진 폴리펩타이드이고,
상기 CDCP1은 서열번호 2의 아미노산 서열로 이루어진 폴리펩타이드인, 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 조성물. - 제1항에 있어서,
ABCA1, IDOL, EpCAM, SQLE 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 물질을 추가로 포함하는, 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 조성물. - 제3항에 있어서,
상기 ABCA1은 서열번호 3의 아미노산 서열로 이루어진 폴리펩타이드이고,
상기 IDOL은 서열번호 4의 아미노산 서열로 이루어진 폴리펩타이드이고,
상기 EpCAM은 서열번호 5의 아미노산 서열로 이루어진 폴리펩타이드이고,
상기 SQLE는 서열번호 9의 아미노산 서열로 이루어진 폴리펩타이드인, 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 조성물. - 제1항에 있어서,
상기 암은 고형암인, 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 조성물. - 제5항에 있어서,
상기 고형암은 대장암, 폐암, 유방암, 췌장암, 신장암, 간암, 위암, 자궁암 및 전립선암으로 이루어진 군에서 선택되는 것인, 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 조성물. - 제1항에 있어서,
상기 단백질의 수준을 측정하는 물질은 상기 단백질에 특이적으로 결합하는 항체인, 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 조성물. - 제1항에 있어서,
상기 유전자의 발현 수준을 측정하는 물질은 상기 유전자 또는 그의 유전자 발현물에 특이적으로 결합하는 프라이머 또는 프로브인, 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 조성물. - 제8항에 있어서,
상기 유전자 발현물은 mRNA인, 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 조성물. - 제1항에 있어서,
상기 혈액 시료는 혈액 내 순환 종양 세포를 포함하는, 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 조성물. - 제1항 내지 제10항 중 어느 한 항의 조성물을 포함하는, 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 키트.
- 제11항에 있어서,
상기 키트는 PCR 키트, RT-PCR 키트, DNA 칩 키트, ELISA 키트, 단백질 칩 키트, 래피드 키트 또는 MRM 키트인, 개체로부터 채취한 혈액 시료를 이용한 암 전이 또는 재발 진단용 키트. - 암이 발생한 개체로부터 분리된 혈액 시료에서 CD110 및 CDCP1으로 이루어진 군에서 선택되는 어느 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및
상기 측정된 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 높은 경우를 암 전이 상태로 판정하는 단계를 포함하는, 암 전이 진단을 위한 정보제공방법. - 제13항에 있어서,
암이 발생한 개체로부터 분리된 혈액 시료에서 ABCA1, IDOL, EpCAM, SQLE 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계를 추가로 포함하는, 암 전이 진단을 위한 정보제공방법. - 제14항에 있어서,
상기 측정된 ABCA1 및 SQLE로 이루어진 군에서 선택되는 어느 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 낮은 경우를 암 전이 상태로 판정하고, 상기 측정된 IDOL 및 EpCAM으로 이루어진 군에서 선택되는 어느 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 높은 경우를 암 전이 상태로 판정하는 단계를 추가로 포함하는, 암 전이 진단을 위한 정보제공방법. - 제13항에 있어서,
상기 혈액 시료는 혈액 내 순환종양세포를 포함하는, 암 전이 진단을 위한 정보제공방법. - 종양 치료를 받은 개체로부터 분리된 혈액 시료에서 CD110 및 CDCP1으로 이루어진 군에서 선택되는 어느 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및
상기 측정된 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 높은 경우를 암 재발 상태로 판정하는 단계를 포함하는, 암 재발 진단을 위한 정보제공방법. - 제17항에 있어서,
종양 치료를 받은 개체로부터 분리된 혈액 시료에서 ABCA1, IDOL, EpCAM, SQLE 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계를 추가로 포함하는, 암 재발 진단을 위한 정보제공방법. - 제18항에 있어서,
상기 측정된 ABCA1 및 SQLE로 이루어진 군에서 선택되는 어느 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 낮은 경우를 암 재발 상태로 판정하고, 상기 측정된 IDOL 및 EpCAM으로 이루어진 군에서 선택되는 어느 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 높은 경우를 암 재발 상태로 판정하는 단계를 추가로 포함하는, 암 재발 진단을 위한 정보제공방법. - 제17항에 있어서,
상기 혈액 시료는 혈액 내 순환종양세포를 포함하는, 암 재발 진단을 위한 정보제공방법. - ABCA1 및 IDOL로 이루어진 군에서 선택되는 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 물질을 포함하는 암 전이 또는 재발 진단용 조성물.
- 제21항에 있어서,
EpCAM, CD110, CDCP1, SQLE 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 물질을 추가로 포함하는, 암 전이 또는 재발 진단용 조성물. - 제21항 또는 제22항의 조성물을 포함하는, 암 전이 또는 재발 진단용 키트
- 암이 발생한 개체로부터 분리된 혈액 시료에서 ABCA1 및 IDOL로 이루어진 군에서 선택되는 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및
상기 측정된 ABCA1 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 낮은 경우를 암 전이 상태로 판정하고, 상기 측정된 IDOL 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 높은 경우를 암 전이 상태로 판정하는 단계를 포함하는, 암 전이 진단을 위한 정보제공방법. - 제24항에 있어서,
암이 발생한 개체로부터 분리된 혈액 시료에서 EpCAM, CD110, CDCP1, SQLE 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및
상기 측정된 SQLE 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 낮은 경우를 암 전이 상태로 판정하고, 상기 측정된 EpCAM, CD110, CDCP1 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 전이되지 않은 개체와 비교하여 높은 경우를 암 전이 상태로 판정하는 단계를 추가로 포함하는, 암 전이 진단을 위한 정보제공방법. - 종양 치료를 받은 개체로부터 분리된 혈액 시료에서 ABCA1 및 IDOL로 이루어진 군에서 선택되는 하나 이상의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및
상기 측정된 ABCA1 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 낮은 경우를 암 재발 상태로 판정하고, 상기 측정된 IDOL 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 높은 경우를 암 재발 상태로 판정하는 단계를 포함하는, 암 재발 진단을 위한 정보제공방법. - 제26항에 있어서,
종양 치료를 받은 개체로부터 분리된 혈액 시료에서 EpCAM, CD110, CDCP1, SQLE 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준을 측정하는 단계; 및
상기 측정된 SQLE 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 낮은 경우를 암 재발 상태로 판정하고, 상기 측정된 EpCAM, CD110, CDCP1 및 이의 조합으로 이루어진 군에서 선택되는 어느 하나의 단백질의 수준 또는 이를 코딩하는 유전자의 발현 수준이 암이 재발되지 않은 개체와 비교하여 높은 경우를 암 재발 상태로 판정하는 단계를 추가로 포함하는, 암 재발 진단을 위한 정보제공방법.
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