KR102864537B1 - 시퀀싱 공정 - Google Patents

시퀀싱 공정

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Publication number
KR102864537B1
KR102864537B1 KR1020237031371A KR20237031371A KR102864537B1 KR 102864537 B1 KR102864537 B1 KR 102864537B1 KR 1020237031371 A KR1020237031371 A KR 1020237031371A KR 20237031371 A KR20237031371 A KR 20237031371A KR 102864537 B1 KR102864537 B1 KR 102864537B1
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KR
South Korea
Prior art keywords
molecular tag
nucleic acid
sequence
template nucleic
sequences
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Application number
KR1020237031371A
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English (en)
Korean (ko)
Other versions
KR20230141873A (ko
Inventor
캐서린 마리 버크
아론 얼 달링
Original Assignee
일루미나 싱가포르 피티이 엘티디
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First worldwide family litigation filed litigation Critical https://patents.darts-ip.com/?family=51177418&utm_source=google_patent&utm_medium=platform_link&utm_campaign=public_patent_search&patent=KR102864537(B1) "Global patent litigation dataset” by Darts-ip is licensed under a Creative Commons Attribution 4.0 International License.
Application filed by 일루미나 싱가포르 피티이 엘티디 filed Critical 일루미나 싱가포르 피티이 엘티디
Publication of KR20230141873A publication Critical patent/KR20230141873A/ko
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Publication of KR102864537B1 publication Critical patent/KR102864537B1/ko
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    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
    • C12Q2563/179—Nucleic acid detection characterized by the use of physical, structural and functional properties the label being a nucleic acid
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
    • C12Q2565/50—Detection characterised by immobilisation to a surface
    • C12Q2565/514—Detection characterised by immobilisation to a surface characterised by the use of the arrayed oligonucleotides as identifier tags, e.g. universal addressable array, anti-tag or tag complement array

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Analytical Chemistry (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
KR1020237031371A 2014-05-23 2015-05-22 시퀀싱 공정 Active KR102864537B1 (ko)

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
GBGB1409282.9A GB201409282D0 (en) 2014-05-23 2014-05-23 Sequencing process
GB1409282.9 2014-05-23
KR1020227004592A KR102579902B1 (ko) 2014-05-23 2015-05-22 시퀀싱 공정
PCT/GB2015/051518 WO2015177570A1 (en) 2014-05-23 2015-05-22 Sequencing process

Related Parent Applications (1)

Application Number Title Priority Date Filing Date
KR1020227004592A Division KR102579902B1 (ko) 2014-05-23 2015-05-22 시퀀싱 공정

Publications (2)

Publication Number Publication Date
KR20230141873A KR20230141873A (ko) 2023-10-10
KR102864537B1 true KR102864537B1 (ko) 2025-09-24

Family

ID=51177418

Family Applications (3)

Application Number Title Priority Date Filing Date
KR1020167036033A Active KR102363284B1 (ko) 2014-05-23 2015-05-22 시퀀싱 공정
KR1020227004592A Active KR102579902B1 (ko) 2014-05-23 2015-05-22 시퀀싱 공정
KR1020237031371A Active KR102864537B1 (ko) 2014-05-23 2015-05-22 시퀀싱 공정

Family Applications Before (2)

Application Number Title Priority Date Filing Date
KR1020167036033A Active KR102363284B1 (ko) 2014-05-23 2015-05-22 시퀀싱 공정
KR1020227004592A Active KR102579902B1 (ko) 2014-05-23 2015-05-22 시퀀싱 공정

Country Status (12)

Country Link
US (2) US11047002B2 (enExample)
EP (1) EP3146070B2 (enExample)
JP (1) JP6687605B2 (enExample)
KR (3) KR102363284B1 (enExample)
CN (2) CN107002120B (enExample)
AU (1) AU2015263055B2 (enExample)
CA (1) CA2949925A1 (enExample)
DK (1) DK3146070T5 (enExample)
ES (1) ES2697804T5 (enExample)
GB (1) GB201409282D0 (enExample)
SG (1) SG11201609754QA (enExample)
WO (1) WO2015177570A1 (enExample)

Families Citing this family (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP3465502B1 (en) 2016-05-26 2024-04-10 Becton, Dickinson and Company Molecular label counting adjustment methods
CN109906274B (zh) * 2016-11-08 2023-08-25 贝克顿迪金森公司 用于细胞标记分类的方法
CN109952612B (zh) 2016-11-08 2023-12-01 贝克顿迪金森公司 用于表达谱分类的方法
KR101798229B1 (ko) * 2016-12-27 2017-12-12 주식회사 천랩 전장 리보솜 rna 서열정보를 얻는 방법 및 상기 리보솜 rna 서열정보를 이용하여 미생물을 동정하는 방법
CN111108218B (zh) * 2017-09-20 2024-06-25 生命科技股份有限公司 使用压缩的分子标记的核酸序列数据检测融合的方法
CN111247589B (zh) * 2017-09-25 2025-06-03 贝克顿迪金森公司 免疫受体条形码错误校正
JP7208230B2 (ja) * 2017-10-09 2023-01-18 プソマーゲン， インコーポレイテッド 核酸配列を特性決定するための単一分子シーケンシング及び固有の分子識別子
JPWO2019132010A1 (ja) * 2017-12-28 2021-01-21 タカラバイオ株式会社 塩基配列における塩基種を推定する方法、装置及びプログラム
EP3620539A1 (en) 2018-08-10 2020-03-11 Tata Consultancy Services Limited Method and system for improving amplicon sequencing based taxonomic resolution of microbial communities
AU2019321208A1 (en) * 2018-08-13 2021-02-18 Illumina Singapore Pte. Ltd. Sequencing algorithm

Family Cites Families (14)

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Publication number Priority date Publication date Assignee Title
US7094531B1 (en) * 1997-01-15 2006-08-22 Xzillion Gmbh Co. Nucleic acid sequencing
JP4403069B2 (ja) * 2002-08-12 2010-01-20 独立行政法人理化学研究所 クローニングおよび分析のためのｍＲＮＡの５’末端の使用方法
JP4413017B2 (ja) * 2004-01-15 2010-02-10 独立行政法人理化学研究所 クラスタリングプログラムおよびクラスタリング装置
CA2613248A1 (en) * 2005-06-23 2006-12-28 Keygene N.V. Improved strategies for sequencing complex genomes using high throughput sequencing technologies
KR20090034930A (ko) * 2006-06-30 2009-04-08 암비트 바이오사이언시즈 코포레이션 탐지 가능한 핵산 태그
JP2013514079A (ja) 2009-12-17 2013-04-25 キージーン・エン・フェー 制限酵素に基づく全ゲノムシーケンシング
EP2599877B1 (en) 2010-06-30 2017-09-27 BGI Genomics Co., Limited New pcr sequencing method and use thereof in hla genotyping
US9033273B2 (en) 2010-11-02 2015-05-19 Jonathan Edelson Integrated aircraft ground navigation control system
DK3246416T3 (da) 2011-04-15 2024-09-02 Univ Johns Hopkins Sikkert sekventeringssystem
SG194745A1 (en) * 2011-05-20 2013-12-30 Fluidigm Corp Nucleic acid encoding reactions
US11177020B2 (en) 2012-02-27 2021-11-16 The University Of North Carolina At Chapel Hill Methods and uses for molecular tags
EP4234713A3 (en) 2012-03-20 2024-02-14 University Of Washington Through Its Center For Commercialization Methods of lowering the error rate of massively parallel dna sequencing using duplex consensus sequencing
EP2841601B1 (en) 2012-04-24 2019-03-06 Gen9, Inc. Methods for sorting nucleic acids and multiplexed preparative in vitro cloning
EP2898071A4 (en) 2012-09-21 2016-07-20 Broad Inst Inc COMPOSITIONS AND METHODS FOR LONG-TERM LABORATORIES AND PREPARED END OF NUCLEIC ACIDS IN EMULSION DROPS

Non-Patent Citations (5)

* Cited by examiner, † Cited by third party
Title
Applied and Environmental Microbiology (2013) 79(17):5112-5120
European Journal of Clinical Microbiology & Infectious Diseases (2009) 28:1151-1154
Gut Pathogens (2014.02.24.) 6:4
Nature Methods (2013) 10(10):999-1002
PLoS ONE (2011) 6(12):e27310

Also Published As

Publication number Publication date
CN107002120B (zh) 2022-08-09
KR20170012390A (ko) 2017-02-02
DK3146070T5 (en) 2019-01-21
KR20220025213A (ko) 2022-03-03
EP3146070B1 (en) 2018-09-26
US20210403991A1 (en) 2021-12-30
CA2949925A1 (en) 2015-11-26
KR102579902B1 (ko) 2023-09-18
CN107002120A (zh) 2017-08-01
US11047002B2 (en) 2021-06-29
SG11201609754QA (en) 2016-12-29
EP3146070B2 (en) 2024-07-31
GB201409282D0 (en) 2014-07-09
ES2697804T3 (es) 2019-01-28
KR102363284B1 (ko) 2022-02-15
JP6687605B2 (ja) 2020-04-22
JP2017517282A (ja) 2017-06-29
US20170183724A1 (en) 2017-06-29
DK3146070T3 (en) 2019-01-07
ES2697804T5 (es) 2024-11-25
CN116072218A (zh) 2023-05-05
KR20230141873A (ko) 2023-10-10
AU2015263055A1 (en) 2016-12-08
AU2015263055B2 (en) 2020-12-03
WO2015177570A1 (en) 2015-11-26
EP3146070A1 (en) 2017-03-29

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