DK3146070T5 - Sequencing Process - Google Patents

Sequencing Process Download PDF

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Publication number
DK3146070T5
DK3146070T5 DK15727042.2T DK15727042T DK3146070T5 DK 3146070 T5 DK3146070 T5 DK 3146070T5 DK 15727042 T DK15727042 T DK 15727042T DK 3146070 T5 DK3146070 T5 DK 3146070T5
Authority
DK
Denmark
Prior art keywords
nucleic acid
sequences
template nucleic
molecule
acid molecules
Prior art date
Application number
DK15727042.2T
Other languages
Danish (da)
English (en)
Other versions
DK3146070T3 (en
Inventor
Catherine Maree Burke
Aaron Earl Darling
Original Assignee
Longas Tech Pty Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Family has litigation
First worldwide family litigation filed litigation Critical https://patents.darts-ip.com/?family=51177418&utm_source=google_patent&utm_medium=platform_link&utm_campaign=public_patent_search&patent=DK3146070(T5) "Global patent litigation dataset” by Darts-ip is licensed under a Creative Commons Attribution 4.0 International License.
Application filed by Longas Tech Pty Ltd filed Critical Longas Tech Pty Ltd
Application granted granted Critical
Publication of DK3146070T3 publication Critical patent/DK3146070T3/en
Publication of DK3146070T5 publication Critical patent/DK3146070T5/en

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Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
    • C12Q2563/179—Nucleic acid detection characterized by the use of physical, structural and functional properties the label being a nucleic acid
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
    • C12Q2565/50—Detection characterised by immobilisation to a surface
    • C12Q2565/514—Detection characterised by immobilisation to a surface characterised by the use of the arrayed oligonucleotides as identifier tags, e.g. universal addressable array, anti-tag or tag complement array

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Analytical Chemistry (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
DK15727042.2T 2014-05-23 2015-05-22 Sequencing Process DK3146070T5 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
GBGB1409282.9A GB201409282D0 (en) 2014-05-23 2014-05-23 Sequencing process
PCT/GB2015/051518 WO2015177570A1 (en) 2014-05-23 2015-05-22 Sequencing process

Publications (2)

Publication Number Publication Date
DK3146070T3 DK3146070T3 (en) 2019-01-07
DK3146070T5 true DK3146070T5 (en) 2019-01-21

Family

ID=51177418

Family Applications (1)

Application Number Title Priority Date Filing Date
DK15727042.2T DK3146070T5 (en) 2014-05-23 2015-05-22 Sequencing Process

Country Status (11)

Country Link
US (2) US11047002B2 (enExample)
EP (1) EP3146070B2 (enExample)
JP (1) JP6687605B2 (enExample)
KR (3) KR102864537B1 (enExample)
CN (2) CN107002120B (enExample)
AU (1) AU2015263055B2 (enExample)
DK (1) DK3146070T5 (enExample)
ES (1) ES2697804T5 (enExample)
GB (1) GB201409282D0 (enExample)
SG (1) SG11201609754QA (enExample)
WO (1) WO2015177570A1 (enExample)

Families Citing this family (12)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2017205691A1 (en) 2016-05-26 2017-11-30 Cellular Research, Inc. Molecular label counting adjustment methods
CN109906274B (zh) * 2016-11-08 2023-08-25 贝克顿迪金森公司 用于细胞标记分类的方法
AU2017359048B2 (en) 2016-11-08 2022-07-21 Becton, Dickinson And Company Methods for expression profile classification
KR101798229B1 (ko) * 2016-12-27 2017-12-12 주식회사 천랩 전장 리보솜 rna 서열정보를 얻는 방법 및 상기 리보솜 rna 서열정보를 이용하여 미생물을 동정하는 방법
CN111108218B (zh) 2017-09-20 2024-06-25 生命科技股份有限公司 使用压缩的分子标记的核酸序列数据检测融合的方法
WO2019060804A1 (en) * 2017-09-25 2019-03-28 Cellular Research, Inc. IMMUNE BAR CODE RECEIVER ERROR CORRECTION
KR102878365B1 (ko) * 2017-10-09 2025-10-31 주식회사 마크로젠 단일 분자 서열분석 및 핵산서열 특성화를 위한 고유한 분자 식별자
WO2019132010A1 (ja) * 2017-12-28 2019-07-04 タカラバイオ株式会社 塩基配列における塩基種を推定する方法、装置及びプログラム
US12221657B2 (en) 2018-08-10 2025-02-11 Tata Consultancy Services Limited Method and system for improving amplicon sequencing based taxonomic resolution of microbial communities
EP3710597B1 (en) * 2018-08-13 2021-07-14 Longas Technologies Pty Ltd Sequencing algorithm
US12651646B2 (en) 2021-07-23 2026-06-09 Illumina, Inc. Machine-learning model for recalibrating nucleotide-base calls
WO2025255494A1 (en) 2024-06-07 2025-12-11 Illumina, Inc. Identifying the origin of amplified rna molecules

Family Cites Families (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
NZ336770A (en) * 1997-01-15 2001-01-26 Brax Group Ltd Enzymatic method and kit for sequencing DNA
JP4403069B2 (ja) * 2002-08-12 2010-01-20 独立行政法人理化学研究所 クローニングおよび分析のためのｍＲＮＡの５’末端の使用方法
JP4413017B2 (ja) * 2004-01-15 2010-02-10 独立行政法人理化学研究所 クラスタリングプログラムおよびクラスタリング装置
US20090142758A1 (en) * 2005-06-23 2009-06-04 Keygene N V Strategies for sequencing complex genomes using high throughput sequencing technologies
JP5415264B2 (ja) * 2006-06-30 2014-02-12 ドイスコベルク コーポレーション 検出可能な核酸タグ
EP2513333B1 (en) 2009-12-17 2013-10-02 Keygene N.V. Restriction enzyme based whole genome sequencing
DK2599877T3 (da) 2010-06-30 2017-11-20 Bgi Genomics Co Ltd Hidtil ukendt pcr sekvenseringsfremgangsmåde og anvendelse deraf i hla-genotypebestemmelse
US9033273B2 (en) 2010-11-02 2015-05-19 Jonathan Edelson Integrated aircraft ground navigation control system
EP3246416B1 (en) 2011-04-15 2024-06-05 The Johns Hopkins University Safe sequencing system
SG10201605049QA (en) * 2011-05-20 2016-07-28 Fluidigm Corp Nucleic acid encoding reactions
WO2013130512A2 (en) 2012-02-27 2013-09-06 The University Of North Carolina At Chapel Hill Methods and uses for molecular tags
WO2013142389A1 (en) 2012-03-20 2013-09-26 University Of Washington Through Its Center For Commercialization Methods of lowering the error rate of massively parallel dna sequencing using duplex consensus sequencing
CA2871505C (en) 2012-04-24 2021-10-12 Gen9, Inc. Methods for sorting nucleic acids and multiplexed preparative in vitro cloning
WO2014047556A1 (en) 2012-09-21 2014-03-27 The Broad Institute, Inc. Compositions and methods for long insert, paired end libraries of nucleic acids in emulsion droplets

Also Published As

Publication number Publication date
CN116072218A (zh) 2023-05-05
AU2015263055A1 (en) 2016-12-08
ES2697804T5 (es) 2024-11-25
WO2015177570A1 (en) 2015-11-26
GB201409282D0 (en) 2014-07-09
KR20230141873A (ko) 2023-10-10
EP3146070B1 (en) 2018-09-26
US11047002B2 (en) 2021-06-29
JP2017517282A (ja) 2017-06-29
EP3146070B2 (en) 2024-07-31
CA2949925A1 (en) 2015-11-26
KR102363284B1 (ko) 2022-02-15
SG11201609754QA (en) 2016-12-29
CN107002120B (zh) 2022-08-09
JP6687605B2 (ja) 2020-04-22
KR102864537B1 (ko) 2025-09-24
ES2697804T3 (es) 2019-01-28
AU2015263055B2 (en) 2020-12-03
KR20220025213A (ko) 2022-03-03
DK3146070T3 (en) 2019-01-07
CN107002120A (zh) 2017-08-01
US20170183724A1 (en) 2017-06-29
US20210403991A1 (en) 2021-12-30
EP3146070A1 (en) 2017-03-29
KR20170012390A (ko) 2017-02-02
KR102579902B1 (ko) 2023-09-18

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