KR102363284B1 - 시퀀싱 공정 - Google Patents

시퀀싱 공정 Download PDF

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Publication number
KR102363284B1
KR102363284B1 KR1020167036033A KR20167036033A KR102363284B1 KR 102363284 B1 KR102363284 B1 KR 102363284B1 KR 1020167036033 A KR1020167036033 A KR 1020167036033A KR 20167036033 A KR20167036033 A KR 20167036033A KR 102363284 B1 KR102363284 B1 KR 102363284B1
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nucleic acid
molecular tag
template nucleic
sequence
acid molecules
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Korean (ko)
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KR20170012390A (ko
Inventor
캐서린 마리 버크
아론 얼 달링
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롱가스 테크놀로지즈 피티와이 엘티디
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First worldwide family litigation filed litigation Critical https://patents.darts-ip.com/?family=51177418&utm_source=google_patent&utm_medium=platform_link&utm_campaign=public_patent_search&patent=KR102363284(B1) "Global patent litigation dataset” by Darts-ip is licensed under a Creative Commons Attribution 4.0 International License.
Application filed by 롱가스 테크놀로지즈 피티와이 엘티디 filed Critical 롱가스 테크놀로지즈 피티와이 엘티디
Priority to KR1020227004592A priority Critical patent/KR102579902B1/ko
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    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2535/00—Reactions characterised by the assay type for determining the identity of a nucleotide base or a sequence of oligonucleotides
    • C12Q2535/122—Massive parallel sequencing
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
    • C12Q2563/179—Nucleic acid detection characterized by the use of physical, structural and functional properties the label being a nucleic acid
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
    • C12Q2565/50—Detection characterised by immobilisation to a surface
    • C12Q2565/514—Detection characterised by immobilisation to a surface characterised by the use of the arrayed oligonucleotides as identifier tags, e.g. universal addressable array, anti-tag or tag complement array

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  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Analytical Chemistry (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
KR1020167036033A 2014-05-23 2015-05-22 시퀀싱 공정 Active KR102363284B1 (ko)

Priority Applications (1)

Application Number Priority Date Filing Date Title
KR1020227004592A KR102579902B1 (ko) 2014-05-23 2015-05-22 시퀀싱 공정

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
GB1409282.9 2014-05-23
GBGB1409282.9A GB201409282D0 (en) 2014-05-23 2014-05-23 Sequencing process
PCT/GB2015/051518 WO2015177570A1 (en) 2014-05-23 2015-05-22 Sequencing process

Related Child Applications (1)

Application Number Title Priority Date Filing Date
KR1020227004592A Division KR102579902B1 (ko) 2014-05-23 2015-05-22 시퀀싱 공정

Publications (2)

Publication Number Publication Date
KR20170012390A KR20170012390A (ko) 2017-02-02
KR102363284B1 true KR102363284B1 (ko) 2022-02-15

Family

ID=51177418

Family Applications (3)

Application Number Title Priority Date Filing Date
KR1020167036033A Active KR102363284B1 (ko) 2014-05-23 2015-05-22 시퀀싱 공정
KR1020227004592A Active KR102579902B1 (ko) 2014-05-23 2015-05-22 시퀀싱 공정
KR1020237031371A Active KR102864537B1 (ko) 2014-05-23 2015-05-22 시퀀싱 공정

Family Applications After (2)

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KR1020227004592A Active KR102579902B1 (ko) 2014-05-23 2015-05-22 시퀀싱 공정
KR1020237031371A Active KR102864537B1 (ko) 2014-05-23 2015-05-22 시퀀싱 공정

Country Status (12)

Country Link
US (2) US11047002B2 (enExample)
EP (1) EP3146070B2 (enExample)
JP (1) JP6687605B2 (enExample)
KR (3) KR102363284B1 (enExample)
CN (2) CN107002120B (enExample)
AU (1) AU2015263055B2 (enExample)
CA (1) CA2949925A1 (enExample)
DK (1) DK3146070T5 (enExample)
ES (1) ES2697804T5 (enExample)
GB (1) GB201409282D0 (enExample)
SG (1) SG11201609754QA (enExample)
WO (1) WO2015177570A1 (enExample)

Families Citing this family (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
ES2979395T3 (es) 2016-05-26 2024-09-25 Becton Dickinson Co Métodos de ajuste del recuento de etiquetas moleculares
EP3539035B1 (en) 2016-11-08 2024-04-17 Becton, Dickinson and Company Methods for expression profile classification
CN109906274B (zh) * 2016-11-08 2023-08-25 贝克顿迪金森公司 用于细胞标记分类的方法
KR101798229B1 (ko) * 2016-12-27 2017-12-12 주식회사 천랩 전장 리보솜 rna 서열정보를 얻는 방법 및 상기 리보솜 rna 서열정보를 이용하여 미생물을 동정하는 방법
CN111108218B (zh) * 2017-09-20 2024-06-25 生命科技股份有限公司 使用压缩的分子标记的核酸序列数据检测融合的方法
EP4379727A1 (en) * 2017-09-25 2024-06-05 Becton, Dickinson and Company Immune receptor-barcode error correction
JP7208230B2 (ja) * 2017-10-09 2023-01-18 プソマーゲン， インコーポレイテッド 核酸配列を特性決定するための単一分子シーケンシング及び固有の分子識別子
WO2019132010A1 (ja) * 2017-12-28 2019-07-04 タカラバイオ株式会社 塩基配列における塩基種を推定する方法、装置及びプログラム
US12221657B2 (en) 2018-08-10 2025-02-11 Tata Consultancy Services Limited Method and system for improving amplicon sequencing based taxonomic resolution of microbial communities
CN113015813B (zh) * 2018-08-13 2025-09-19 伊鲁米那新加坡私人有限公司 测序算法
WO2025255494A1 (en) 2024-06-07 2025-12-11 Illumina, Inc. Identifying the origin of amplified rna molecules

Citations (1)

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WO2006137734A1 (en) 2005-06-23 2006-12-28 Keygene N.V. Improved strategies for sequencing complex genomes using high throughput sequencing technologies

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JP2001508308A (ja) * 1997-01-15 2001-06-26 ブラックス グループ リミテッド 核酸配列決定
JP4403069B2 (ja) * 2002-08-12 2010-01-20 独立行政法人理化学研究所 クローニングおよび分析のためのｍＲＮＡの５’末端の使用方法
JP4413017B2 (ja) * 2004-01-15 2010-02-10 独立行政法人理化学研究所 クラスタリングプログラムおよびクラスタリング装置
US9110054B2 (en) * 2006-06-30 2015-08-18 Discoverx Corporation Detectable nucleic acid tag
WO2011074960A1 (en) 2009-12-17 2011-06-23 Keygene N.V. Restriction enzyme based whole genome sequencing
RU2587606C2 (ru) 2010-06-30 2016-06-20 БиДжиАй Дженомикс Ко., Лтд Новый способ пцр-секвенирования и его применение в генотипировании hla
US9033273B2 (en) 2010-11-02 2015-05-19 Jonathan Edelson Integrated aircraft ground navigation control system
AU2012242847B2 (en) 2011-04-15 2017-01-19 The Johns Hopkins University Safe sequencing system
EP2710172B1 (en) 2011-05-20 2017-03-29 Fluidigm Corporation Nucleic acid encoding reactions
WO2013130512A2 (en) 2012-02-27 2013-09-06 The University Of North Carolina At Chapel Hill Methods and uses for molecular tags
DK2828218T3 (da) 2012-03-20 2020-11-02 Univ Washington Through Its Center For Commercialization Methods of lowering the error rate of massively parallel dna sequencing using duplex consensus sequencing
AU2013251701A1 (en) 2012-04-24 2014-10-30 Gen9, Inc. Methods for sorting nucleic acids and multiplexed preparative in vitro cloning
EP2898071A4 (en) 2012-09-21 2016-07-20 Broad Inst Inc COMPOSITIONS AND METHODS FOR LONG-TERM LABORATORIES AND PREPARED END OF NUCLEIC ACIDS IN EMULSION DROPS

Patent Citations (1)

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Publication number Priority date Publication date Assignee Title
WO2006137734A1 (en) 2005-06-23 2006-12-28 Keygene N.V. Improved strategies for sequencing complex genomes using high throughput sequencing technologies

Non-Patent Citations (5)

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Title
Applied and Environmental Microbiology (2013) 79(17):5112-5120
European Journal of Clinical Microbiology & Infectious Diseases (2009) 28:1151-1154
Gut Pathogens (2014.02.24.) 6:4
Nature Methods (2013) 10(10):999-1002
PLoS ONE (2011) 6(12):e27310

Also Published As

Publication number Publication date
KR102864537B1 (ko) 2025-09-24
SG11201609754QA (en) 2016-12-29
JP2017517282A (ja) 2017-06-29
AU2015263055A1 (en) 2016-12-08
EP3146070B1 (en) 2018-09-26
CN116072218A (zh) 2023-05-05
CN107002120B (zh) 2022-08-09
KR20230141873A (ko) 2023-10-10
ES2697804T3 (es) 2019-01-28
KR20220025213A (ko) 2022-03-03
ES2697804T5 (es) 2024-11-25
AU2015263055B2 (en) 2020-12-03
KR102579902B1 (ko) 2023-09-18
CA2949925A1 (en) 2015-11-26
KR20170012390A (ko) 2017-02-02
US20210403991A1 (en) 2021-12-30
JP6687605B2 (ja) 2020-04-22
US20170183724A1 (en) 2017-06-29
EP3146070A1 (en) 2017-03-29
EP3146070B2 (en) 2024-07-31
GB201409282D0 (en) 2014-07-09
WO2015177570A1 (en) 2015-11-26
CN107002120A (zh) 2017-08-01
DK3146070T3 (en) 2019-01-07
DK3146070T5 (en) 2019-01-21
US11047002B2 (en) 2021-06-29

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