CA2949925A1 - Sequencing process - Google Patents

Sequencing process Download PDF

Info

Publication number
CA2949925A1
CA2949925A1 CA2949925A CA2949925A CA2949925A1 CA 2949925 A1 CA2949925 A1 CA 2949925A1 CA 2949925 A CA2949925 A CA 2949925A CA 2949925 A CA2949925 A CA 2949925A CA 2949925 A1 CA2949925 A1 CA 2949925A1
Authority
CA
Canada
Prior art keywords
nucleic acid
sequences
template nucleic
molecular tag
acid molecules
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
CA2949925A
Other languages
English (en)
French (fr)
Inventor
Catherine Maree BURKE
Aaron Earl DARLING
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Illumina Singapore Pte Ltd
Original Assignee
University of Technology Sydney
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Family has litigation
First worldwide family litigation filed litigation Critical https://patents.darts-ip.com/?family=51177418&utm_source=google_patent&utm_medium=platform_link&utm_campaign=public_patent_search&patent=CA2949925(A1) "Global patent litigation dataset” by Darts-ip is licensed under a Creative Commons Attribution 4.0 International License.
Application filed by University of Technology Sydney filed Critical University of Technology Sydney
Publication of CA2949925A1 publication Critical patent/CA2949925A1/en
Pending legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
    • C12Q2563/179—Nucleic acid detection characterized by the use of physical, structural and functional properties the label being a nucleic acid
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
    • C12Q2565/50—Detection characterised by immobilisation to a surface
    • C12Q2565/514—Detection characterised by immobilisation to a surface characterised by the use of the arrayed oligonucleotides as identifier tags, e.g. universal addressable array, anti-tag or tag complement array

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Analytical Chemistry (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
CA2949925A 2014-05-23 2015-05-22 Sequencing process Pending CA2949925A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
GBGB1409282.9A GB201409282D0 (en) 2014-05-23 2014-05-23 Sequencing process
GB1409282.9 2014-05-23
PCT/GB2015/051518 WO2015177570A1 (en) 2014-05-23 2015-05-22 Sequencing process

Publications (1)

Publication Number Publication Date
CA2949925A1 true CA2949925A1 (en) 2015-11-26

Family

ID=51177418

Family Applications (1)

Application Number Title Priority Date Filing Date
CA2949925A Pending CA2949925A1 (en) 2014-05-23 2015-05-22 Sequencing process

Country Status (12)

Country Link
US (2) US11047002B2 (enExample)
EP (1) EP3146070B2 (enExample)
JP (1) JP6687605B2 (enExample)
KR (3) KR102363284B1 (enExample)
CN (2) CN107002120B (enExample)
AU (1) AU2015263055B2 (enExample)
CA (1) CA2949925A1 (enExample)
DK (1) DK3146070T5 (enExample)
ES (1) ES2697804T5 (enExample)
GB (1) GB201409282D0 (enExample)
SG (1) SG11201609754QA (enExample)
WO (1) WO2015177570A1 (enExample)

Families Citing this family (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US11397882B2 (en) 2016-05-26 2022-07-26 Becton, Dickinson And Company Molecular label counting adjustment methods
EP4628595A3 (en) * 2016-11-08 2025-11-05 Becton, Dickinson and Company Methods for cell label classification
CN109952612B (zh) 2016-11-08 2023-12-01 贝克顿迪金森公司 用于表达谱分类的方法
KR101798229B1 (ko) * 2016-12-27 2017-12-12 주식회사 천랩 전장 리보솜 rna 서열정보를 얻는 방법 및 상기 리보솜 rna 서열정보를 이용하여 미생물을 동정하는 방법
KR102886094B1 (ko) * 2017-09-20 2025-11-14 라이프 테크놀로지스 코포레이션 압축된 분자 태깅된 핵산 서열 데이터를 사용하여 융합을 검출하는 방법
EP3688763B1 (en) * 2017-09-25 2023-11-15 Becton, Dickinson and Company Immune receptor-barcode error correction
SG11202001858PA (en) * 2017-10-09 2020-04-29 Psomagen Inc Single molecule sequencing and unique molecular identifiers to characterize nucleic acid sequences
WO2019132010A1 (ja) * 2017-12-28 2019-07-04 タカラバイオ株式会社 塩基配列における塩基種を推定する方法、装置及びプログラム
EP3620539B1 (en) 2018-08-10 2026-01-14 Tata Consultancy Services Limited Method and system for improving amplicon sequencing based taxonomic resolution of microbial communities
WO2020035669A1 (en) * 2018-08-13 2020-02-20 Longas Technologies Pty Ltd Sequencing algorithm
WO2025255494A1 (en) 2024-06-07 2025-12-11 Illumina, Inc. Identifying the origin of amplified rna molecules

Family Cites Families (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1998031831A1 (en) * 1997-01-15 1998-07-23 Brax Group Limited Nucleic acid sequencing
JP4403069B2 (ja) * 2002-08-12 2010-01-20 独立行政法人理化学研究所 クローニングおよび分析のためのｍＲＮＡの５’末端の使用方法
JP4413017B2 (ja) * 2004-01-15 2010-02-10 独立行政法人理化学研究所 クラスタリングプログラムおよびクラスタリング装置
JP2008546405A (ja) * 2005-06-23 2008-12-25 キージーン ナムローゼ フェンノートシャップ ハイスループットシーケンシング技術を使用して複雑なゲノムをシーケンシングするための改善された戦略
EP2044219B1 (en) * 2006-06-30 2013-05-22 DiscoveRx Corporation Detectable nucleic acid tag
CA2783548A1 (en) 2009-12-17 2011-06-23 Keygene N.V. Restriction enzyme based whole genome sequencing
AU2011274090B2 (en) † 2010-06-30 2015-04-09 Bgi Genomics Co., Ltd New PCR sequencing method and use thereof in HLA genotyping
US9033273B2 (en) 2010-11-02 2015-05-19 Jonathan Edelson Integrated aircraft ground navigation control system
WO2012142213A2 (en) † 2011-04-15 2012-10-18 The Johns Hopkins University Safe sequencing system
SG10201605049QA (en) * 2011-05-20 2016-07-28 Fluidigm Corp Nucleic acid encoding reactions
ES2776673T3 (es) † 2012-02-27 2020-07-31 Univ North Carolina Chapel Hill Métodos y usos para etiquetas moleculares
HUE051845T2 (hu) 2012-03-20 2021-03-29 Univ Washington Through Its Center For Commercialization Módszerek a tömegesen párhuzamos DNS-szekvenálás hibaarányának csökkentésére duplex konszenzus szekvenálással
WO2013163263A2 (en) 2012-04-24 2013-10-31 Gen9, Inc. Methods for sorting nucleic acids and multiplexed preparative in vitro cloning
WO2014047556A1 (en) 2012-09-21 2014-03-27 The Broad Institute, Inc. Compositions and methods for long insert, paired end libraries of nucleic acids in emulsion droplets

Also Published As

Publication number Publication date
KR102864537B1 (ko) 2025-09-24
ES2697804T5 (es) 2024-11-25
GB201409282D0 (en) 2014-07-09
KR20220025213A (ko) 2022-03-03
CN107002120A (zh) 2017-08-01
EP3146070B1 (en) 2018-09-26
CN107002120B (zh) 2022-08-09
EP3146070B2 (en) 2024-07-31
KR20230141873A (ko) 2023-10-10
JP2017517282A (ja) 2017-06-29
SG11201609754QA (en) 2016-12-29
WO2015177570A1 (en) 2015-11-26
KR102363284B1 (ko) 2022-02-15
CN116072218A (zh) 2023-05-05
KR20170012390A (ko) 2017-02-02
EP3146070A1 (en) 2017-03-29
US20170183724A1 (en) 2017-06-29
US11047002B2 (en) 2021-06-29
ES2697804T3 (es) 2019-01-28
AU2015263055A1 (en) 2016-12-08
AU2015263055B2 (en) 2020-12-03
DK3146070T5 (en) 2019-01-21
US20210403991A1 (en) 2021-12-30
JP6687605B2 (ja) 2020-04-22
KR102579902B1 (ko) 2023-09-18
DK3146070T3 (en) 2019-01-07

Similar Documents

Publication Publication Date Title
US20210403991A1 (en) Sequencing Process
AU2018254595B2 (en) Using cell-free DNA fragment size to detect tumor-associated variant
RU2704286C2 (ru) Подавление ошибок в секвенированных фрагментах днк посредством применения избыточных прочтений с уникальными молекулярными индексами (umi)
Burke et al. A method for high precision sequencing of near full-length 16S rRNA genes on an Illumina MiSeq
US11789906B2 (en) Systems and methods for genomic manipulations and analysis
EP3165612B1 (en) Method for counting number of nucleic acid molecules
US20190121941A1 (en) Algorithms for sequence determinations
Del Chierico et al. Choice of next-generation sequencing pipelines
CN105574360A (zh) 将靶标富集的序列读出分配到基因组位置的方法
CN115867665A (zh) 嵌合扩增子阵列测序
Shetty et al. Introduction to nucleic acid sequencing
HK1235832A1 (en) Sequencing process
HK1235832B (en) Sequencing process
HK40086867A (zh) 测序方法
El-Sabeh Finishing the job-utility of long-read sequencing using the minion for bacterial genomics
HK1237374B (en) Method for counting number of nucleic acid molecules

Legal Events

Date Code Title Description
EEER Examination request

Effective date: 20200521

EEER Examination request

Effective date: 20200521

EEER Examination request

Effective date: 20200521

EEER Examination request

Effective date: 20200521

EEER Examination request

Effective date: 20200521

EEER Examination request

Effective date: 20200521

EEER Examination request

Effective date: 20200521

EEER Examination request

Effective date: 20200521

EEER Examination request

Effective date: 20200521

EEER Examination request

Effective date: 20200521