CA2949925A1 - Sequencing process - Google Patents

Sequencing process Download PDF

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Publication number
CA2949925A1
CA2949925A1 CA2949925A CA2949925A CA2949925A1 CA 2949925 A1 CA2949925 A1 CA 2949925A1 CA 2949925 A CA2949925 A CA 2949925A CA 2949925 A CA2949925 A CA 2949925A CA 2949925 A1 CA2949925 A1 CA 2949925A1
Authority
CA
Canada
Prior art keywords
nucleic acid
sequences
template nucleic
molecular tag
acid molecules
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
CA2949925A
Other languages
English (en)
French (fr)
Inventor
Catherine Maree BURKE
Aaron Earl DARLING
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Illumina Singapore Pte Ltd
Original Assignee
University of Technology Sydney
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Family has litigation
First worldwide family litigation filed litigation Critical https://patents.darts-ip.com/?family=51177418&utm_source=google_patent&utm_medium=platform_link&utm_campaign=public_patent_search&patent=CA2949925(A1) "Global patent litigation dataset” by Darts-ip is licensed under a Creative Commons Attribution 4.0 International License.
Application filed by University of Technology Sydney filed Critical University of Technology Sydney
Publication of CA2949925A1 publication Critical patent/CA2949925A1/en
Pending legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
    • C12Q2563/179—Nucleic acid detection characterized by the use of physical, structural and functional properties the label being a nucleic acid
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
    • C12Q2565/50—Detection characterised by immobilisation to a surface
    • C12Q2565/514—Detection characterised by immobilisation to a surface characterised by the use of the arrayed oligonucleotides as identifier tags, e.g. universal addressable array, anti-tag or tag complement array

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Analytical Chemistry (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
CA2949925A 2014-05-23 2015-05-22 Sequencing process Pending CA2949925A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
GBGB1409282.9A GB201409282D0 (en) 2014-05-23 2014-05-23 Sequencing process
GB1409282.9 2014-05-23
PCT/GB2015/051518 WO2015177570A1 (en) 2014-05-23 2015-05-22 Sequencing process

Publications (1)

Publication Number Publication Date
CA2949925A1 true CA2949925A1 (en) 2015-11-26

Family

ID=51177418

Family Applications (1)

Application Number Title Priority Date Filing Date
CA2949925A Pending CA2949925A1 (en) 2014-05-23 2015-05-22 Sequencing process

Country Status (12)

Country Link
US (2) US11047002B2 (enExample)
EP (1) EP3146070B2 (enExample)
JP (1) JP6687605B2 (enExample)
KR (3) KR102579902B1 (enExample)
CN (2) CN107002120B (enExample)
AU (1) AU2015263055B2 (enExample)
CA (1) CA2949925A1 (enExample)
DK (1) DK3146070T5 (enExample)
ES (1) ES2697804T5 (enExample)
GB (1) GB201409282D0 (enExample)
SG (1) SG11201609754QA (enExample)
WO (1) WO2015177570A1 (enExample)

Families Citing this family (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN109074430B (zh) 2016-05-26 2022-03-29 贝克顿迪金森公司 分子标记计数调整方法
AU2017359048B2 (en) 2016-11-08 2022-07-21 Becton, Dickinson And Company Methods for expression profile classification
KR102790039B1 (ko) * 2016-11-08 2025-04-04 벡톤 디킨슨 앤드 컴퍼니 세포 표지 분류 방법
KR101798229B1 (ko) * 2016-12-27 2017-12-12 주식회사 천랩 전장 리보솜 rna 서열정보를 얻는 방법 및 상기 리보솜 rna 서열정보를 이용하여 미생물을 동정하는 방법
WO2019060494A1 (en) * 2017-09-20 2019-03-28 Life Technologies Corporation METHODS OF DETECTING FUSIONS USING COMPRESSED MOLECULAR LABEL NUCLEIC ACID SEQUENCE DATA
WO2019060804A1 (en) * 2017-09-25 2019-03-28 Cellular Research, Inc. IMMUNE BAR CODE RECEIVER ERROR CORRECTION
WO2019074960A1 (en) * 2017-10-09 2019-04-18 uBiome, Inc. SEQUENCING A SINGLE MOLECULE AND UNIQUE MOLECULAR IDENTIFIERS FOR CHARACTERIZING NUCLEIC ACID SEQUENCES
WO2019132010A1 (ja) * 2017-12-28 2019-07-04 タカラバイオ株式会社 塩基配列における塩基種を推定する方法、装置及びプログラム
EP3620539B1 (en) 2018-08-10 2026-01-14 Tata Consultancy Services Limited Method and system for improving amplicon sequencing based taxonomic resolution of microbial communities
CA3222084A1 (en) * 2018-08-13 2020-02-20 Illumina Singapore Pte. Ltd. Sequencing algorithm
WO2025255494A1 (en) 2024-06-07 2025-12-11 Illumina, Inc. Identifying the origin of amplified rna molecules

Family Cites Families (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7094531B1 (en) * 1997-01-15 2006-08-22 Xzillion Gmbh Co. Nucleic acid sequencing
JP4403069B2 (ja) * 2002-08-12 2010-01-20 独立行政法人理化学研究所 クローニングおよび分析のためのｍＲＮＡの５’末端の使用方法
JP4413017B2 (ja) * 2004-01-15 2010-02-10 独立行政法人理化学研究所 クラスタリングプログラムおよびクラスタリング装置
DE602006013831D1 (de) * 2005-06-23 2010-06-02 Keygene Nv Verbesserte strategien zur sequenzierung komplexer genome unter verwendung von sequenziertechniken mit hohem durchsatz
EP2044219B1 (en) * 2006-06-30 2013-05-22 DiscoveRx Corporation Detectable nucleic acid tag
US8932812B2 (en) 2009-12-17 2015-01-13 Keygene N.V. Restriction enzyme based whole genome sequencing
WO2012000445A1 (zh) † 2010-06-30 2012-01-05 深圳华大基因科技有限公司 新的的pcr测序方法及其在hla基因分型中的应用
US9033273B2 (en) 2010-11-02 2015-05-19 Jonathan Edelson Integrated aircraft ground navigation control system
AU2012242847B2 (en) 2011-04-15 2017-01-19 The Johns Hopkins University Safe sequencing system
US9074204B2 (en) * 2011-05-20 2015-07-07 Fluidigm Corporation Nucleic acid encoding reactions
US11177020B2 (en) † 2012-02-27 2021-11-16 The University Of North Carolina At Chapel Hill Methods and uses for molecular tags
ES2828661T3 (es) † 2012-03-20 2021-05-27 Univ Washington Through Its Center For Commercialization Métodos para reducir la tasa de error de la secuenciación de ADN masiva en paralelo mediante el uso de la secuenciación de secuencia consenso bicatenaria
EP2841601B1 (en) 2012-04-24 2019-03-06 Gen9, Inc. Methods for sorting nucleic acids and multiplexed preparative in vitro cloning
EP2898071A4 (en) 2012-09-21 2016-07-20 Broad Inst Inc COMPOSITIONS AND METHODS FOR LONG-TERM LABORATORIES AND PREPARED END OF NUCLEIC ACIDS IN EMULSION DROPS

Also Published As

Publication number Publication date
KR20170012390A (ko) 2017-02-02
CN107002120B (zh) 2022-08-09
JP2017517282A (ja) 2017-06-29
KR102363284B1 (ko) 2022-02-15
AU2015263055A1 (en) 2016-12-08
JP6687605B2 (ja) 2020-04-22
KR102864537B1 (ko) 2025-09-24
DK3146070T5 (en) 2019-01-21
EP3146070A1 (en) 2017-03-29
KR102579902B1 (ko) 2023-09-18
KR20230141873A (ko) 2023-10-10
ES2697804T3 (es) 2019-01-28
US20170183724A1 (en) 2017-06-29
AU2015263055B2 (en) 2020-12-03
EP3146070B2 (en) 2024-07-31
CN116072218A (zh) 2023-05-05
GB201409282D0 (en) 2014-07-09
CN107002120A (zh) 2017-08-01
KR20220025213A (ko) 2022-03-03
ES2697804T5 (es) 2024-11-25
SG11201609754QA (en) 2016-12-29
US20210403991A1 (en) 2021-12-30
EP3146070B1 (en) 2018-09-26
WO2015177570A1 (en) 2015-11-26
US11047002B2 (en) 2021-06-29
DK3146070T3 (en) 2019-01-07

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