KR102231977B1 - 핵산 서열의 결정 방법 - Google Patents
핵산 서열의 결정 방법 Download PDFInfo
- Publication number
- KR102231977B1 KR102231977B1 KR1020187034503A KR20187034503A KR102231977B1 KR 102231977 B1 KR102231977 B1 KR 102231977B1 KR 1020187034503 A KR1020187034503 A KR 1020187034503A KR 20187034503 A KR20187034503 A KR 20187034503A KR 102231977 B1 KR102231977 B1 KR 102231977B1
- Authority
- KR
- South Korea
- Prior art keywords
- nucleotide
- nucleic acid
- polymerase
- dna polymerase
- optionally
- Prior art date
Links
Images
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/10—Transferases (2.)
- C12N9/12—Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
- C12N9/1241—Nucleotidyltransferases (2.7.7)
- C12N9/1247—DNA-directed RNA polymerase (2.7.7.6)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2521/00—Reaction characterised by the enzymatic activity
- C12Q2521/10—Nucleotidyl transfering
- C12Q2521/101—DNA polymerase
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
- C12Q2565/50—Detection characterised by immobilisation to a surface
- C12Q2565/518—Detection characterised by immobilisation to a surface characterised by the immobilisation of the nucleic acid sample or target
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y207/00—Transferases transferring phosphorus-containing groups (2.7)
- C12Y207/07—Nucleotidyltransferases (2.7.7)
- C12Y207/07006—DNA-directed RNA polymerase (2.7.7.6)
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Engineering & Computer Science (AREA)
- Molecular Biology (AREA)
- Genetics & Genomics (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Biochemistry (AREA)
- Biotechnology (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Analytical Chemistry (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Medicinal Chemistry (AREA)
- Biomedical Technology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Enzymes And Modification Thereof (AREA)
Applications Claiming Priority (5)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201662329489P | 2016-04-29 | 2016-04-29 | |
US62/329,489 | 2016-04-29 | ||
US201762444733P | 2017-01-10 | 2017-01-10 | |
US62/444,733 | 2017-01-10 | ||
PCT/US2017/030135 WO2017190012A1 (en) | 2016-04-29 | 2017-04-28 | Method of nucleic acid sequence determination |
Publications (2)
Publication Number | Publication Date |
---|---|
KR20190003660A KR20190003660A (ko) | 2019-01-09 |
KR102231977B1 true KR102231977B1 (ko) | 2021-03-24 |
Family
ID=58672825
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
KR1020187034503A KR102231977B1 (ko) | 2016-04-29 | 2017-04-28 | 핵산 서열의 결정 방법 |
Country Status (9)
Country | Link |
---|---|
US (2) | US10584379B2 (ja) |
EP (1) | EP3449011B1 (ja) |
JP (1) | JP6915939B2 (ja) |
KR (1) | KR102231977B1 (ja) |
CN (1) | CN109154024B (ja) |
AU (1) | AU2017258523B2 (ja) |
CA (1) | CA3022431C (ja) |
SG (1) | SG11201809522WA (ja) |
WO (1) | WO2017190012A1 (ja) |
Families Citing this family (33)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US10597643B2 (en) | 2016-04-29 | 2020-03-24 | Omniome, Inc. | Polymerases engineered to reduce nucleotide-independent DNA binding |
WO2017190012A1 (en) | 2016-04-29 | 2017-11-02 | Omniome, Inc. | Method of nucleic acid sequence determination |
JP6828140B2 (ja) * | 2016-08-15 | 2021-02-10 | オムニオム インコーポレイテッドOmniome, Inc. | 核酸をシーケンシングするための方法及びシステム |
US10975427B2 (en) | 2017-01-20 | 2021-04-13 | Omniome, Inc. | Process for cognate nucleotide detection in a nucleic acid sequencing workflow |
US10161003B2 (en) | 2017-04-25 | 2018-12-25 | Omniome, Inc. | Methods and apparatus that increase sequencing-by-binding efficiency |
CA3079411C (en) | 2017-10-19 | 2023-12-05 | Omniome, Inc. | Simultaneous background reduction and complex stabilization in binding assay workflows |
US10851131B2 (en) | 2018-02-16 | 2020-12-01 | Illumina, Inc. | Charge-tagged nucleotides and methods of use thereof |
US10400272B1 (en) | 2018-04-26 | 2019-09-03 | Omniome, Inc. | Methods and compositions for stabilizing nucleic acid-nucleotide-polymerase complexes |
EP3802874A1 (en) | 2018-05-31 | 2021-04-14 | Omniome, Inc. | Increased signal to noise in nucleic acid sequencing |
EP3827097A1 (en) | 2018-07-24 | 2021-06-02 | Omniome, Inc. | Serial formation of ternary complex species |
WO2020060811A1 (en) | 2018-09-17 | 2020-03-26 | Omniome, Inc. | Engineered polymerases for improved sequencing |
US10876148B2 (en) | 2018-11-14 | 2020-12-29 | Element Biosciences, Inc. | De novo surface preparation and uses thereof |
US10768173B1 (en) | 2019-09-06 | 2020-09-08 | Element Biosciences, Inc. | Multivalent binding composition for nucleic acid analysis |
US10704094B1 (en) | 2018-11-14 | 2020-07-07 | Element Biosciences, Inc. | Multipart reagents having increased avidity for polymerase binding |
US20240011086A1 (en) | 2018-11-15 | 2024-01-11 | Omniome, Inc. | Electronic detection of nucleic acid structure |
GB2578528B (en) | 2018-12-04 | 2021-02-24 | Omniome Inc | Mixed-phase fluids for nucleic acid sequencing and other analytical assays |
WO2020132350A2 (en) | 2018-12-20 | 2020-06-25 | Omniome, Inc. | Temperature control for analysis of nucleic acids and other analytes |
US11499189B2 (en) | 2019-02-14 | 2022-11-15 | Pacific Biosciences Of California, Inc. | Mitigating adverse impacts of detection systems on nucleic acids and other biological analytes |
WO2020242901A1 (en) * | 2019-05-24 | 2020-12-03 | Element Biosciences, Inc. | Polymerase-nucleotide conjugates for sequencing by trapping |
JP2022537381A (ja) * | 2019-06-20 | 2022-08-25 | アリゾナ・ボード・オブ・リージェンツ・オン・ビハーフ・オブ・アリゾナ・ステイト・ユニバーシティー | 核酸配列の直接電気的読み出し |
EP3986907A1 (en) * | 2019-06-21 | 2022-04-27 | Thermo Fisher Scientific Baltics UAB | Oligonucleotide-tethered triphosphate nucleotides useful for labelling nucleic acids for preparing next-generation sequencing libraries |
US11180520B2 (en) | 2019-09-10 | 2021-11-23 | Omniome, Inc. | Reversible modifications of nucleotides |
US11287422B2 (en) | 2019-09-23 | 2022-03-29 | Element Biosciences, Inc. | Multivalent binding composition for nucleic acid analysis |
EP4045683A1 (en) | 2019-10-18 | 2022-08-24 | Omniome, Inc. | Methods and compositions for capping nucleic acids |
EP4055155A1 (en) | 2019-11-08 | 2022-09-14 | Pacific Biosciences of California, Inc. | Engineered polymerases for improved sequencing by binding |
DE202019106694U1 (de) | 2019-12-02 | 2020-03-19 | Omniome, Inc. | System zur Sequenzierung von Nukleinsäuren in Fluidschaum |
DE202019106695U1 (de) | 2019-12-02 | 2020-03-19 | Omniome, Inc. | System zur Sequenzierung von Nukleinsäuren in Fluidschaum |
CN115516104A (zh) | 2020-03-03 | 2022-12-23 | 加利福尼亚太平洋生物科学股份有限公司 | 用于对双链核酸进行测序的方法和组合物 |
WO2021225886A1 (en) | 2020-05-05 | 2021-11-11 | Omniome, Inc. | Compositions and methods for modifying polymerase-nucleic acid complexes |
WO2022006081A1 (en) * | 2020-06-30 | 2022-01-06 | Illumina, Inc. | Catalytically controlled sequencing by synthesis to produce scarless dna |
US20220356515A1 (en) | 2021-05-10 | 2022-11-10 | Pacific Biosciences Of California, Inc. | Dna amplification buffer replenishment during rolling circle amplification |
US20220356519A1 (en) | 2021-05-10 | 2022-11-10 | Pacific Biosciences Of California, Inc. | Single-molecule seeding and amplification on a surface |
WO2023081485A1 (en) * | 2021-11-08 | 2023-05-11 | Pacific Biosciences Of California, Inc. | Stepwise sequencing of a polynucleotide with a homogenous reaction mixture |
Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2005019476A1 (en) | 2003-08-20 | 2005-03-03 | Applera Corporation | Polymerase compositions |
WO2007091077A1 (en) | 2006-02-08 | 2007-08-16 | Solexa Limited | Method for sequencing a polynucleotide template |
WO2010141390A2 (en) | 2009-06-05 | 2010-12-09 | Life Technologies Corporation | Nucleotide transient binding for sequencing methods |
Family Cites Families (26)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CA2044616A1 (en) | 1989-10-26 | 1991-04-27 | Roger Y. Tsien | Dna sequencing |
US7057026B2 (en) | 2001-12-04 | 2006-06-06 | Solexa Limited | Labelled nucleotides |
US7414116B2 (en) | 2002-08-23 | 2008-08-19 | Illumina Cambridge Limited | Labelled nucleotides |
US8071755B2 (en) | 2004-05-25 | 2011-12-06 | Helicos Biosciences Corporation | Nucleotide analogs |
US7264934B2 (en) | 2004-06-10 | 2007-09-04 | Ge Healthcare Bio-Sciences Corp. | Rapid parallel nucleic acid analysis |
DE602005020011D1 (de) * | 2004-06-10 | 2010-04-29 | Ge Healthcare Bio Sciences | Verfahren zur nukleinsäureanalyse |
CN101914620B (zh) | 2004-09-17 | 2014-02-12 | 加利福尼亚太平洋生命科学公司 | 核酸测序的方法 |
US7482120B2 (en) | 2005-01-28 | 2009-01-27 | Helicos Biosciences Corporation | Methods and compositions for improving fidelity in a nucleic acid synthesis reaction |
US7544794B1 (en) | 2005-03-11 | 2009-06-09 | Steven Albert Benner | Method for sequencing DNA and RNA by synthesis |
US8241573B2 (en) | 2006-03-31 | 2012-08-14 | Illumina, Inc. | Systems and devices for sequence by synthesis analysis |
US8962293B2 (en) * | 2006-10-18 | 2015-02-24 | Roche Molecular Systems, Inc. | DNA polymerases and related methods |
US8026091B2 (en) * | 2007-07-13 | 2011-09-27 | Roche Molecular Systems, Inc. | DNA polymerases and related methods |
US8652781B2 (en) | 2008-02-12 | 2014-02-18 | Pacific Biosciences Of California, Inc. | Cognate sampling kinetics |
US8628940B2 (en) | 2008-09-24 | 2014-01-14 | Pacific Biosciences Of California, Inc. | Intermittent detection during analytical reactions |
WO2009145820A2 (en) | 2008-03-31 | 2009-12-03 | Pacific Biosciences Of California, Inc. | Generation of modified polymerases for improved accuracy in single molecule sequencing |
US8133672B2 (en) | 2008-03-31 | 2012-03-13 | Pacific Biosciences Of California, Inc. | Two slow-step polymerase enzyme systems and methods |
WO2010075188A2 (en) | 2008-12-23 | 2010-07-01 | Illumina Inc. | Multibase delivery for long reads in sequencing by synthesis protocols |
WO2010111686A2 (en) | 2009-03-27 | 2010-09-30 | Life Technologies Corp | Labeled enzyme compositions, methods & systems |
US20130040365A1 (en) | 2011-08-10 | 2013-02-14 | Life Technologies Corporation | Polymerase compositions, methods of making and using same |
WO2013096692A1 (en) | 2011-12-21 | 2013-06-27 | Illumina, Inc. | Apparatus and methods for kinetic analysis and determination of nucleic acid sequences |
CN103898077B (zh) | 2012-12-24 | 2017-01-11 | 财团法人工业技术研究院 | 单离的脱氧核糖核酸聚合酶、套组及其应用 |
GB201301178D0 (en) | 2013-01-23 | 2013-03-06 | Dynamic Biosensors Gmbh | Method for sequencing a template nucleic acid immobilized on a substrate |
WO2015048763A1 (en) | 2013-09-30 | 2015-04-02 | Life Technologies Corporation | Polymerase compositions, methods of making and using same |
US10077470B2 (en) | 2015-07-21 | 2018-09-18 | Omniome, Inc. | Nucleic acid sequencing methods and systems |
US10597643B2 (en) | 2016-04-29 | 2020-03-24 | Omniome, Inc. | Polymerases engineered to reduce nucleotide-independent DNA binding |
WO2017190012A1 (en) | 2016-04-29 | 2017-11-02 | Omniome, Inc. | Method of nucleic acid sequence determination |
-
2017
- 2017-04-28 WO PCT/US2017/030135 patent/WO2017190012A1/en active Application Filing
- 2017-04-28 AU AU2017258523A patent/AU2017258523B2/en active Active
- 2017-04-28 SG SG11201809522WA patent/SG11201809522WA/en unknown
- 2017-04-28 KR KR1020187034503A patent/KR102231977B1/ko active IP Right Grant
- 2017-04-28 EP EP17722356.7A patent/EP3449011B1/en active Active
- 2017-04-28 CA CA3022431A patent/CA3022431C/en active Active
- 2017-04-28 JP JP2018556287A patent/JP6915939B2/ja active Active
- 2017-04-28 US US15/581,822 patent/US10584379B2/en active Active
- 2017-04-28 CN CN201780026228.XA patent/CN109154024B/zh active Active
-
2020
- 2020-01-07 US US16/736,071 patent/US11976323B2/en active Active
Patent Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2005019476A1 (en) | 2003-08-20 | 2005-03-03 | Applera Corporation | Polymerase compositions |
WO2007091077A1 (en) | 2006-02-08 | 2007-08-16 | Solexa Limited | Method for sequencing a polynucleotide template |
WO2010141390A2 (en) | 2009-06-05 | 2010-12-09 | Life Technologies Corporation | Nucleotide transient binding for sequencing methods |
Non-Patent Citations (2)
Title |
---|
Mol Cell. 2006 Apr 7, 22(1):5-13 |
Nature. 2012 Jul 12, 487(7406): 196-201 |
Also Published As
Publication number | Publication date |
---|---|
US20200199668A1 (en) | 2020-06-25 |
AU2017258523A1 (en) | 2018-11-22 |
CN109154024B (zh) | 2022-03-04 |
US11976323B2 (en) | 2024-05-07 |
US20170314072A1 (en) | 2017-11-02 |
CA3022431C (en) | 2023-03-21 |
US10584379B2 (en) | 2020-03-10 |
JP6915939B2 (ja) | 2021-08-11 |
EP3449011B1 (en) | 2020-11-04 |
CA3022431A1 (en) | 2017-11-02 |
KR20190003660A (ko) | 2019-01-09 |
AU2017258523B2 (en) | 2020-08-13 |
JP2019526225A (ja) | 2019-09-19 |
CN109154024A (zh) | 2019-01-04 |
EP3449011A1 (en) | 2019-03-06 |
SG11201809522WA (en) | 2018-11-29 |
WO2017190012A1 (en) | 2017-11-02 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
KR102231977B1 (ko) | 핵산 서열의 결정 방법 | |
US11203779B2 (en) | Sequencing method for rapid identification and processing of cognate nucleotide pairs | |
US11203778B2 (en) | Sequencing method employing ternary complex destabilization to identify cognate nucleotides | |
US20210340600A1 (en) | Nucleic acid sequencing method and system employing enhanced detection of nucleotide-specific ternary complex formation | |
CA3033741A1 (en) | Method and system for sequencing nucleic acids |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
A201 | Request for examination | ||
E902 | Notification of reason for refusal | ||
E902 | Notification of reason for refusal | ||
E701 | Decision to grant or registration of patent right | ||
GRNT | Written decision to grant |