JP7626466B2 - 情報処理装置、情報処理方法、情報処理プログラム、及び情報処理システム - Google Patents

情報処理装置、情報処理方法、情報処理プログラム、及び情報処理システム Download PDF

Info

Publication number
JP7626466B2
JP7626466B2 JP2022108668A JP2022108668A JP7626466B2 JP 7626466 B2 JP7626466 B2 JP 7626466B2 JP 2022108668 A JP2022108668 A JP 2022108668A JP 2022108668 A JP2022108668 A JP 2022108668A JP 7626466 B2 JP7626466 B2 JP 7626466B2
Authority
JP
Japan
Prior art keywords
information
peptide
prediction
residue
user
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
JP2022108668A
Other languages
English (en)
Japanese (ja)
Other versions
JP2022137148A5 (enExample
JP2022137148A (ja
Inventor
泰 秋山
雅史 大上
渓甫 柳澤
寧 吉川
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Ahead Biocomputing Co Ltd
Original Assignee
Ahead Biocomputing Co Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from JP2021023750A external-priority patent/JP7125575B2/ja
Application filed by Ahead Biocomputing Co Ltd filed Critical Ahead Biocomputing Co Ltd
Publication of JP2022137148A publication Critical patent/JP2022137148A/ja
Publication of JP2022137148A5 publication Critical patent/JP2022137148A5/ja
Application granted granted Critical
Publication of JP7626466B2 publication Critical patent/JP7626466B2/ja
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16HHEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H50/00ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics
    • G16H50/20ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics for computer-aided diagnosis, e.g. based on medical expert systems
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16CCOMPUTATIONAL CHEMISTRY; CHEMOINFORMATICS; COMPUTATIONAL MATERIALS SCIENCE
    • G16C20/00Chemoinformatics, i.e. ICT specially adapted for the handling of physicochemical or structural data of chemical particles, elements, compounds or mixtures
    • G16C20/30Prediction of properties of chemical compounds, compositions or mixtures
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00ICT programming tools or database systems specially adapted for bioinformatics
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16CCOMPUTATIONAL CHEMISTRY; CHEMOINFORMATICS; COMPUTATIONAL MATERIALS SCIENCE
    • G16C20/00Chemoinformatics, i.e. ICT specially adapted for the handling of physicochemical or structural data of chemical particles, elements, compounds or mixtures
    • G16C20/10Analysis or design of chemical reactions, syntheses or processes
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16CCOMPUTATIONAL CHEMISTRY; CHEMOINFORMATICS; COMPUTATIONAL MATERIALS SCIENCE
    • G16C20/00Chemoinformatics, i.e. ICT specially adapted for the handling of physicochemical or structural data of chemical particles, elements, compounds or mixtures
    • G16C20/70Machine learning, data mining or chemometrics
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A90/00Technologies having an indirect contribution to adaptation to climate change
    • Y02A90/10Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation

Landscapes

  • Engineering & Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Theoretical Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Chemical & Material Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Databases & Information Systems (AREA)
  • Computing Systems (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Data Mining & Analysis (AREA)
  • Public Health (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Evolutionary Biology (AREA)
  • Software Systems (AREA)
  • Evolutionary Computation (AREA)
  • Analytical Chemistry (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Artificial Intelligence (AREA)
  • Bioethics (AREA)
  • Biomedical Technology (AREA)
  • Epidemiology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Pathology (AREA)
  • Primary Health Care (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Computer And Data Communications (AREA)
JP2022108668A 2020-11-13 2022-07-05 情報処理装置、情報処理方法、情報処理プログラム、及び情報処理システム Active JP7626466B2 (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
JP2020189856 2020-11-13
JP2020189856 2020-11-13
JP2021023750A JP7125575B2 (ja) 2020-11-13 2021-02-17 情報処理装置、情報処理方法、情報処理プログラム、及び情報処理システム

Related Parent Applications (1)

Application Number Title Priority Date Filing Date
JP2021023750A Division JP7125575B2 (ja) 2020-11-13 2021-02-17 情報処理装置、情報処理方法、情報処理プログラム、及び情報処理システム

Publications (3)

Publication Number Publication Date
JP2022137148A JP2022137148A (ja) 2022-09-21
JP2022137148A5 JP2022137148A5 (enExample) 2024-02-28
JP7626466B2 true JP7626466B2 (ja) 2025-02-04

Family

ID=78598919

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2022108668A Active JP7626466B2 (ja) 2020-11-13 2022-07-05 情報処理装置、情報処理方法、情報処理プログラム、及び情報処理システム

Country Status (4)

Country Link
US (1) US12278001B2 (enExample)
EP (2) EP4002383A3 (enExample)
JP (1) JP7626466B2 (enExample)
CN (1) CN114496093A (enExample)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP7586541B1 (ja) * 2023-10-02 2024-11-19 株式会社Preferred Elements 情報処理装置及び情報処理システム
US12368503B2 (en) 2023-12-27 2025-07-22 Quantum Generative Materials Llc Intent-based satellite transmit management based on preexisting historical location and machine learning

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20100121791A1 (en) 2006-11-03 2010-05-13 Insilicotech Co., Ltd. System, method and program for pharmacokinetic parameter prediction of peptide sequence by mathematical model
US20150300968A1 (en) 2012-12-05 2015-10-22 Nymirum, Inc. Device and Methods for Analysis of Biomolecule Structure, Dynamics and Activity
JP2019028879A (ja) 2017-08-02 2019-02-21 学校法人立命館 結合性予測方法、装置、プログラム、記録媒体、および機械学習アルゴリズムの製造方法
JP2019179356A (ja) 2018-03-30 2019-10-17 株式会社エムティーアイ エピトープ予測方法及びエピトープ予測システム

Family Cites Families (22)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2002510966A (ja) * 1997-04-11 2002-04-09 カリフォルニア・インスティテュート・オブ・テクノロジー 自動蛋白質デザインのための装置および方法
EP1261929A1 (en) * 2000-02-01 2002-12-04 Ppd Discovery, Inc. Data processing system for compound development programs
WO2003054743A1 (fr) 2001-12-10 2003-07-03 Fujitsu Limited Appareil de prediction de la structure tridimensionnelle d'une proteine et procede de prediction associe
KR100924328B1 (ko) * 2006-11-03 2009-11-02 주식회사 인실리코텍 수학적 모델을 이용한 펩타이드 서열의 약동학적 성질 예측시스템 및 방법과 그 프로그램을 저장한 기록매체
DK2202245T3 (en) * 2007-09-26 2016-11-21 Chugai Pharmaceutical Co Ltd A method of modifying an antibody isoelectric point VIA amino acid substitution in CDR
US20130080134A1 (en) * 2008-07-25 2013-03-28 Fundação D. Anna Sommer Champalimaud e Dr. Carlos Montez Champalimaud Systems and methods for predicting favorable-risk disease for patients enrolled in active surveillance
JP5435539B2 (ja) * 2008-09-29 2014-03-05 独立行政法人産業技術総合研究所 抗体産生細胞の活性化ペプチド
JP5098950B2 (ja) * 2008-10-21 2012-12-12 株式会社島津製作所 クライアント・サーバ型分析システム
WO2013132388A1 (en) 2012-03-09 2013-09-12 Basf Se Aerogel based on doped graphene
JP6311864B2 (ja) * 2014-01-15 2018-04-18 株式会社コナミデジタルエンタテインメント ゲーム制御装置、ゲーム制御システム、プログラム
JP6558754B2 (ja) 2015-08-07 2019-08-14 富士通株式会社 情報処理装置、指標次元抽出方法、および指標次元抽出プログラム
CN109564769A (zh) * 2016-06-10 2019-04-02 特韦斯特生物科学公司 用于自动注释和筛选生物序列的系统和方法
CN106167515A (zh) * 2016-09-30 2016-11-30 南京英沛生物技术有限公司 一组Protegrin‑1抗菌肽衍生物及其制备方法与应用
WO2018195357A1 (en) 2017-04-19 2018-10-25 Gritstone Oncology, Inc. Neoantigen identification, manufacture, and use
CN110720127A (zh) 2017-06-09 2020-01-21 磨石肿瘤生物技术公司 新抗原的鉴别、制造及使用
JP6559850B1 (ja) * 2018-07-27 2019-08-14 Karydo TherapeutiX株式会社 ヒトにおける被験物質の作用を予測するための人工知能モデル
US12431219B2 (en) * 2019-04-15 2025-09-30 Bruker Daltonics GmbH & Co. KG Methods for determining isomeric amino acid residues of proteins and peptides
TWI838531B (zh) 2019-05-23 2024-04-11 日商科研製藥股份有限公司 索吡銨溴化物的結晶形態及其製造方法
CA3141619A1 (en) * 2019-05-23 2020-11-26 Takeda Pharmaceutical Company Limited Methods and apparatuses for modeling, simulating, and treating hereditary angioedema
JP7423931B2 (ja) 2019-08-09 2024-01-30 株式会社三洋物産 遊技機
CN111363026B (zh) * 2020-03-31 2022-03-25 浙江省中医院、浙江中医药大学附属第一医院(浙江省东方医院) 一种增强抗原多肽亲和力和稳定性的方法
WO2021211881A1 (en) * 2020-04-17 2021-10-21 Cipherome, Inc. Prediction of adverse drug reaction based on machine-learned models using protein function scores and clinical factors

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20100121791A1 (en) 2006-11-03 2010-05-13 Insilicotech Co., Ltd. System, method and program for pharmacokinetic parameter prediction of peptide sequence by mathematical model
US20150300968A1 (en) 2012-12-05 2015-10-22 Nymirum, Inc. Device and Methods for Analysis of Biomolecule Structure, Dynamics and Activity
JP2019028879A (ja) 2017-08-02 2019-02-21 学校法人立命館 結合性予測方法、装置、プログラム、記録媒体、および機械学習アルゴリズムの製造方法
JP2019179356A (ja) 2018-03-30 2019-10-17 株式会社エムティーアイ エピトープ予測方法及びエピトープ予測システム

Also Published As

Publication number Publication date
EP4213158A1 (en) 2023-07-19
CN114496093A (zh) 2022-05-13
US20220157407A1 (en) 2022-05-19
EP4002383A2 (en) 2022-05-25
JP2022137148A (ja) 2022-09-21
EP4002383A3 (en) 2022-08-03
US12278001B2 (en) 2025-04-15

Similar Documents

Publication Publication Date Title
Mortuza et al. Improving fragment-based ab initio protein structure assembly using low-accuracy contact-map predictions
Foley et al. A fast and efficient colocalization algorithm for identifying shared genetic risk factors across multiple traits
Weiß et al. nQuire: a statistical framework for ploidy estimation using next generation sequencing
Roshan et al. Probalign: multiple sequence alignment using partition function posterior probabilities
Brameier et al. NucPred—predicting nuclear localization of proteins
Huang et al. Protein inference: a review
Surana et al. Pandoragan: generating antiviral peptides using generative adversarial network
Clertant et al. Semiparametric dose finding methods
Zheng et al. Detecting distant-homology protein structures by aligning deep neural-network based contact maps
JP7626466B2 (ja) 情報処理装置、情報処理方法、情報処理プログラム、及び情報処理システム
Tunyasuvunakool The prospects and opportunities of protein structure prediction with AI
Hou et al. Ten quick tips for sequence-based prediction of protein properties using machine learning
Phuong et al. Multiple alignment of protein sequences with repeats and rearrangements
García-Magariño et al. Agent-based simulation of real-estate transactions
Bernard et al. RNAdvisor: a comprehensive benchmarking tool for the measure and prediction of RNA structural model quality
Zhang et al. ComplexQA: a deep graph learning approach for protein complex structure assessment
Ahmed et al. predPhogly-Site: Predicting phosphoglycerylation sites by incorporating probabilistic sequence-coupling information into PseAAC and addressing data imbalance
Chen et al. The influence of dataset homology and a rigorous evaluation strategy on protein secondary structure prediction
JP7125575B2 (ja) 情報処理装置、情報処理方法、情報処理プログラム、及び情報処理システム
CN116049733B (zh) 基于神经网络的效能评估方法、系统、设备与存储介质
Hafemeister et al. Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions
Schelhorn et al. An integrative approach for predicting interactions of protein regions
Scott et al. Model-based clustering and analysis of life history data
Preusse et al. Confidence bounds for the true discovery proportion based on the exact distribution of the number of rejections
Takan et al. De Novo Sequencing of Peptides from Tandem Mass Spectra and Applications in Proteogenomics

Legal Events

Date Code Title Description
A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20240219

A621 Written request for application examination

Free format text: JAPANESE INTERMEDIATE CODE: A621

Effective date: 20240219

TRDD Decision of grant or rejection written
A01 Written decision to grant a patent or to grant a registration (utility model)

Free format text: JAPANESE INTERMEDIATE CODE: A01

Effective date: 20250107

A61 First payment of annual fees (during grant procedure)

Free format text: JAPANESE INTERMEDIATE CODE: A61

Effective date: 20250116

R150 Certificate of patent or registration of utility model

Ref document number: 7626466

Country of ref document: JP

Free format text: JAPANESE INTERMEDIATE CODE: R150