JP7313696B2 - 増強されたRNAインタラクトーム捕捉(eRIC) - Google Patents

増強されたRNAインタラクトーム捕捉(eRIC) Download PDF

Info

Publication number
JP7313696B2
JP7313696B2 JP2020509047A JP2020509047A JP7313696B2 JP 7313696 B2 JP7313696 B2 JP 7313696B2 JP 2020509047 A JP2020509047 A JP 2020509047A JP 2020509047 A JP2020509047 A JP 2020509047A JP 7313696 B2 JP7313696 B2 JP 7313696B2
Authority
JP
Japan
Prior art keywords
rna
eric
proteins
rbps
capture
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
JP2020509047A
Other languages
English (en)
Japanese (ja)
Other versions
JP2020536491A (ja
JP2020536491A5 (enExample
Inventor
イグナチオ ペレスーペリー,ジョエル
ヴェー. ヘンツェ,マティアス
ロジェル,ビルギット
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Europaisches Laboratorium fuer Molekularbiologie EMBL
Original Assignee
Europaisches Laboratorium fuer Molekularbiologie EMBL
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Europaisches Laboratorium fuer Molekularbiologie EMBL filed Critical Europaisches Laboratorium fuer Molekularbiologie EMBL
Publication of JP2020536491A publication Critical patent/JP2020536491A/ja
Publication of JP2020536491A5 publication Critical patent/JP2020536491A5/ja
Application granted granted Critical
Publication of JP7313696B2 publication Critical patent/JP7313696B2/ja
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/5308Immunoassay; Biospecific binding assay; Materials therefor for analytes not provided for elsewhere, e.g. nucleic acids, uric acid, worms, mites
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids

Landscapes

  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Chemical & Material Sciences (AREA)
  • Biomedical Technology (AREA)
  • Urology & Nephrology (AREA)
  • Hematology (AREA)
  • Cell Biology (AREA)
  • Analytical Chemistry (AREA)
  • Biotechnology (AREA)
  • Pathology (AREA)
  • Food Science & Technology (AREA)
  • Medicinal Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • General Physics & Mathematics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
  • Peptides Or Proteins (AREA)
JP2020509047A 2017-08-18 2018-08-17 増強されたRNAインタラクトーム捕捉(eRIC) Active JP7313696B2 (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
EP17186948.0 2017-08-18
EP17186948 2017-08-18
PCT/EP2018/072348 WO2019034783A1 (en) 2017-08-18 2018-08-17 IMPROVED RNA INTERACTOME CAPTURE (ERIC)

Publications (3)

Publication Number Publication Date
JP2020536491A JP2020536491A (ja) 2020-12-17
JP2020536491A5 JP2020536491A5 (enExample) 2021-09-09
JP7313696B2 true JP7313696B2 (ja) 2023-07-25

Family

ID=59702542

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2020509047A Active JP7313696B2 (ja) 2017-08-18 2018-08-17 増強されたRNAインタラクトーム捕捉(eRIC)

Country Status (14)

Country Link
US (1) US12117437B2 (enExample)
EP (1) EP3669193B1 (enExample)
JP (1) JP7313696B2 (enExample)
CN (1) CN110998332B (enExample)
AU (1) AU2018316551B2 (enExample)
CA (1) CA3073297A1 (enExample)
DK (1) DK3669193T3 (enExample)
ES (1) ES2921301T3 (enExample)
HR (1) HRP20220722T1 (enExample)
HU (1) HUE059038T2 (enExample)
PL (1) PL3669193T3 (enExample)
PT (1) PT3669193T (enExample)
RS (1) RS63423B1 (enExample)
WO (1) WO2019034783A1 (enExample)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN110205365B (zh) * 2019-07-02 2023-07-25 中山大学孙逸仙纪念医院 一种高效研究rna相互作用组的高通量测序方法及其应用
GB202101188D0 (en) * 2021-01-28 2021-03-17 Cambridge Entpr Ltd Method
WO2024097262A1 (en) * 2022-10-31 2024-05-10 University Of Virginia Patent Foundation Chemoproteomic capture of rna binding activity in living cells

Family Cites Families (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1999014226A2 (en) * 1997-09-12 1999-03-25 Exiqon A/S Bi- and tri-cyclic nucleoside, nucleotide and oligonucleotide analogues
EP1706489B9 (en) * 2003-12-23 2011-01-05 Santaris Pharma A/S Oligomeric compounds for the modulation of bcl-2
DK2191016T3 (en) 2007-08-20 2015-06-08 Gen Hospital Corp INSULATION OF PROTEIN FACTORS BINDING DIRECT OR INDIRECT WITH NUCLEIC ACIDS
US8748354B2 (en) 2011-08-09 2014-06-10 The Board Of Trustees Of The Leland Stanford Junior University RNA interactome analysis
EP4502607A3 (en) 2014-02-07 2025-05-07 European Molecular Biology Laboratory Proteomic sample preparation using paramagnetic beads
US20150376612A1 (en) 2014-06-10 2015-12-31 The General Hospital Corporation CCCTC-Binding Factor (CTCF) RNA Interactome
EP3271460A4 (en) 2015-03-17 2019-03-13 The General Hospital Corporation RNA INTERACTOM OF POLYCOMB REPRESSIVE COMPLEX 1 (PRC1)

Non-Patent Citations (5)

* Cited by examiner, † Cited by third party
Title
Castello, A. et al.,System-wide identification of RNA-binding proteins by interactome capture,Nature Protocols,2013年,8(3),491-500
Hughes, C. S. et al.,Ultrasensitive proteome analysis using paramagnetic bead technology,Molecular Systems Biology,2014年,10:757
Jacobsen, N. et al.,Direct isolation of poly(A)+ RNA from 4M guanidine thiocyanate-lysed cell extracts using locked nucleic acid-oligo(T) capture,Nucleic Acids Research,2004年,32(7),e64
Michlewski, G. and Caceres, J. F.,RNase-assisted RNA chromatography,RNA,2010年,16,1673-1678
Rogell, B. et al.,Specific RNP capture with antisense LNA/DNA mixmers,RNA,2017年05月05日,23,1290-1302

Also Published As

Publication number Publication date
HUE059038T2 (hu) 2022-10-28
EP3669193B1 (en) 2022-04-06
PT3669193T (pt) 2022-07-06
RS63423B1 (sr) 2022-08-31
US20200209228A1 (en) 2020-07-02
CN110998332B (zh) 2024-04-09
WO2019034783A1 (en) 2019-02-21
HRP20220722T1 (hr) 2022-07-22
AU2018316551B2 (en) 2024-12-05
US12117437B2 (en) 2024-10-15
JP2020536491A (ja) 2020-12-17
ES2921301T3 (es) 2022-08-23
DK3669193T3 (da) 2022-07-11
PL3669193T3 (pl) 2022-07-25
CN110998332A (zh) 2020-04-10
EP3669193A1 (en) 2020-06-24
CA3073297A1 (en) 2019-02-21
AU2018316551A1 (en) 2020-03-05

Similar Documents

Publication Publication Date Title
Benhalevy et al. Proximity-CLIP provides a snapshot of protein-occupied RNA elements in subcellular compartments
Perez-Perri et al. Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture
Perez-Perri et al. Global analysis of RNA-binding protein dynamics by comparative and enhanced RNA interactome capture
Goldfarb et al. Targeted CRISPR disruption reveals a role for RNase MRP RNA in human preribosomal RNA processing
Imig et al. miR-CLIP capture of a miRNA targetome uncovers a lincRNA H19–miR-106a interaction
CN110191962A (zh) 外来体相关核酸的测序和分析
Nabeel-Shah et al. C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes
CN107109698B (zh) Rna stitch测序:用于直接映射细胞中rna:rna相互作用的测定
JP7313696B2 (ja) 増強されたRNAインタラクトーム捕捉(eRIC)
Wang et al. An overview of methodologies in studying lncRNAs in the high-throughput era: when acronyms ATTACK!
Xue Architecture of RNA–RNA interactions
Wolin et al. SPIDR: a highly multiplexed method for mapping RNA-protein interactions uncovers a potential mechanism for selective translational suppression upon cellular stress
Zhao et al. Advances in the identification of long non-coding RNA binding proteins
Aydin et al. SHIFTR enables the unbiased identification of proteins bound to specific RNA regions in live cells
Balzarini et al. A widely applicable and cost-effective method for specific RNA–protein complex isolation
Luyties et al. Multi-omics and biochemical reconstitution reveal CDK7-dependent mechanisms controlling RNA polymerase II function at gene 5′-and 3′ ends
Choy et al. Deciphering noncoding RNA and chromatin interactions: multiplex chromatin interaction analysis by paired-end tag sequencing (mChIA-PET)
Lin et al. In vivo analysis of RNA proximity proteomes using RiboPro
Kilchert RNA–Protein Interactomics
Xu et al. Co-transcriptional RNA processing boosts zygotic gene activation
Pan et al. Updated Pseudo-seq Protocol for Transcriptome-Wide Detection of Pseudouridines
Beckmann et al. Probing the RNA-binding proteome from yeast to man: major advances and challenges
Honson et al. RAPMS 2.0 Improves Specificity and Throughput for Proteomic Identification of RNA Binding Proteins
Zagore The Molecular Function of the RNA Binding Protein DAZL in Male Germ Cell Survival
Qi et al. Genome-Wide Mapping of RNA-Protein Associations via Sequencing

Legal Events

Date Code Title Description
A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20210728

A621 Written request for application examination

Free format text: JAPANESE INTERMEDIATE CODE: A621

Effective date: 20210728

A977 Report on retrieval

Free format text: JAPANESE INTERMEDIATE CODE: A971007

Effective date: 20220608

A131 Notification of reasons for refusal

Free format text: JAPANESE INTERMEDIATE CODE: A131

Effective date: 20220614

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20220902

A131 Notification of reasons for refusal

Free format text: JAPANESE INTERMEDIATE CODE: A131

Effective date: 20221219

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20230317

TRDD Decision of grant or rejection written
A01 Written decision to grant a patent or to grant a registration (utility model)

Free format text: JAPANESE INTERMEDIATE CODE: A01

Effective date: 20230614

A61 First payment of annual fees (during grant procedure)

Free format text: JAPANESE INTERMEDIATE CODE: A61

Effective date: 20230705

R150 Certificate of patent or registration of utility model

Ref document number: 7313696

Country of ref document: JP

Free format text: JAPANESE INTERMEDIATE CODE: R150