JP5908886B2 - ｑＰＣＲ遺伝子型決定データ用の視覚化ツール - Google Patents

ｑＰＣＲ遺伝子型決定データ用の視覚化ツール Download PDF

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JP5908886B2
JP5908886B2 JP2013504011A JP2013504011A JP5908886B2 JP 5908886 B2 JP5908886 B2 JP 5908886B2 JP 2013504011 A JP2013504011 A JP 2013504011A JP 2013504011 A JP2013504011 A JP 2013504011A JP 5908886 B2 JP5908886 B2 JP 5908886B2
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JP2013523167A5 (enExample
JP2013523167A (ja
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ゴードン ジャナウェイ
ゴードン ジャナウェイ
エブリン ウィン−シム チャン
エブリン ウィン−シム チャン
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ライフ テクノロジーズ コーポレーション
ライフ テクノロジーズ コーポレーション
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    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F3/00—Input arrangements for transferring data to be processed into a form capable of being handled by the computer; Output arrangements for transferring data from processing unit to output unit, e.g. interface arrangements
    • G06F3/01—Input arrangements or combined input and output arrangements for interaction between user and computer
    • G06F3/048—Interaction techniques based on graphical user interfaces [GUI]
    • G06F3/0481—Interaction techniques based on graphical user interfaces [GUI] based on specific properties of the displayed interaction object or a metaphor-based environment, e.g. interaction with desktop elements like windows or icons, or assisted by a cursor's changing behaviour or appearance
    • G06F3/0482—Interaction with lists of selectable items, e.g. menus
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B45/00—ICT specially adapted for bioinformatics-related data visualisation, e.g. displaying of maps or networks
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F3/00—Input arrangements for transferring data to be processed into a form capable of being handled by the computer; Output arrangements for transferring data from processing unit to output unit, e.g. interface arrangements
    • G06F3/01—Input arrangements or combined input and output arrangements for interaction between user and computer
    • G06F3/048—Interaction techniques based on graphical user interfaces [GUI]
    • G06F3/0484—Interaction techniques based on graphical user interfaces [GUI] for the control of specific functions or operations, e.g. selecting or manipulating an object, an image or a displayed text element, setting a parameter value or selecting a range
    • G06F3/0485—Scrolling or panning

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  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Theoretical Computer Science (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Medical Informatics (AREA)
  • Evolutionary Biology (AREA)
  • Biophysics (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Chemical & Material Sciences (AREA)
  • Data Mining & Analysis (AREA)
  • Analytical Chemistry (AREA)
  • Genetics & Genomics (AREA)
  • General Engineering & Computer Science (AREA)
  • Human Computer Interaction (AREA)
  • General Physics & Mathematics (AREA)
  • Bioethics (AREA)
  • Software Systems (AREA)
  • Public Health (AREA)
  • Evolutionary Computation (AREA)
  • Epidemiology (AREA)
  • Databases & Information Systems (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Artificial Intelligence (AREA)
  • Signal Processing (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • User Interface Of Digital Computer (AREA)
JP2013504011A 2010-04-09 2011-04-08 ｑＰＣＲ遺伝子型決定データ用の視覚化ツール Active JP5908886B2 (ja)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US32274910P 2010-04-09 2010-04-09
US61/322,749 2010-04-09
PCT/US2011/031855 WO2011127454A2 (en) 2010-04-09 2011-04-08 VISUALIZATION TOOL FOR qPCR GENOTYPING DATA

Related Child Applications (1)

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JP2015246170A Division JP2016127825A (ja) 2010-04-09 2015-12-17 ｑＰＣＲ遺伝子型決定データ用の視覚化ツール

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JP2013523167A JP2013523167A (ja) 2013-06-17
JP2013523167A5 JP2013523167A5 (enExample) 2013-12-05
JP5908886B2 true JP5908886B2 (ja) 2016-04-26

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JP2013504011A Active JP5908886B2 (ja) 2010-04-09 2011-04-08 ｑＰＣＲ遺伝子型決定データ用の視覚化ツール
JP2015246170A Pending JP2016127825A (ja) 2010-04-09 2015-12-17 ｑＰＣＲ遺伝子型決定データ用の視覚化ツール

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US (4) US8572506B2 (enExample)
EP (1) EP2556458B1 (enExample)
JP (2) JP5908886B2 (enExample)
CN (1) CN103069427B (enExample)
SG (1) SG184480A1 (enExample)
WO (1) WO2011127454A2 (enExample)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2016127825A (ja) * 2010-04-09 2016-07-14 ライフ テクノロジーズ コーポレーション ｑＰＣＲ遺伝子型決定データ用の視覚化ツール

Families Citing this family (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN113160896B (zh) 2012-11-07 2024-08-16 生命技术公司 用于数字pcr数据的视像工具
CN105556525B (zh) 2013-06-28 2020-10-30 生命技术公司 用于使数据质量可视化的方法和系统
CN106233239B (zh) * 2014-03-03 2019-06-25 生命技术公司 用于传递数据获取和分析设定的图形用户接口系统和方法
WO2016127086A1 (en) * 2015-02-06 2016-08-11 Life Technologies Corporation Methods and systems for experiment design and analysis
WO2016197028A1 (en) 2015-06-05 2016-12-08 Life Technologies Corporation Determining the limit of detection of rare targets using digital pcr
EP3326095B1 (en) * 2015-07-17 2024-02-07 Life Technologies Corporation Tool for visualizing pcr results
JP7080828B2 (ja) * 2016-05-27 2022-06-06 ライフ テクノロジーズ コーポレーション 生物学的データに対するグラフィカルユーザインターフェースのための方法およびシステム
CN108107024A (zh) * 2016-11-25 2018-06-01 苏州百源基因技术有限公司 一种智能化pcr仪
US12229464B2 (en) 2017-09-28 2025-02-18 Seegene, Inc. Amplification data display method and device
JP7308261B2 (ja) * 2018-08-30 2023-07-13 ライフ テクノロジーズ コーポレーション ジェノタイピングｐｃｒアッセイのための機械学習システム
CN110176277A (zh) * 2019-06-06 2019-08-27 福州大学 一套基于图像识别技术的智能qPCR仪检测系统

Family Cites Families (32)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6027880A (en) * 1995-08-02 2000-02-22 Affymetrix, Inc. Arrays of nucleic acid probes and methods of using the same for detecting cystic fibrosis
US6953663B1 (en) * 1995-11-29 2005-10-11 Affymetrix, Inc. Polymorphism detection
US6300063B1 (en) * 1995-11-29 2001-10-09 Affymetrix, Inc. Polymorphism detection
US7348181B2 (en) * 1997-10-06 2008-03-25 Trustees Of Tufts College Self-encoding sensor with microspheres
CN100392402C (zh) 1998-05-09 2008-06-04 伊康尼西斯公司 处理体液或组织样品用于图像信号数据检测和遗传诊断的方法
US7058517B1 (en) * 1999-06-25 2006-06-06 Genaissance Pharmaceuticals, Inc. Methods for obtaining and using haplotype data
JP5138141B2 (ja) * 2000-05-19 2013-02-06 ルミネックス コーポレーション 核酸の検出用物質及び検出方法
US7197400B2 (en) * 2000-12-12 2007-03-27 Affymetrix, Inc. System and computer software products for comparative gene expression analysis
US20040138821A1 (en) * 2002-09-06 2004-07-15 Affymetrix, Inc. A Corporation Organized Under The Laws Of Delaware System, method, and computer software product for analysis and display of genotyping, annotation, and related information
US20050287575A1 (en) * 2003-09-08 2005-12-29 Affymetrix, Inc. System and method for improved genotype calls using microarrays
KR100601937B1 (ko) 2003-12-26 2006-07-14 삼성전자주식회사 분별 프로브와 암플리콘 프로브가 고정화되어 있는 ｄｎａ칩을 이용하여 유전자형을 판별하는 강건한 방법 및 이에사용되는 ｄｎａ 칩
US20050255485A1 (en) * 2004-05-14 2005-11-17 Livak Kenneth J Detection of gene duplications
KR100601980B1 (ko) * 2005-01-04 2006-07-18 삼성전자주식회사 유전자형 데이터 분석 방법 및 장치
US7465561B2 (en) 2005-06-30 2008-12-16 Roche Molecular Systems, Inc. Probes and methods for hepatitis C virus typing using single probe analysis
US7634363B2 (en) * 2005-12-07 2009-12-15 Affymetrix, Inc. Methods for high throughput genotyping
US7660675B2 (en) * 2006-07-24 2010-02-09 Agilent Technologies, Inc. Method and system for analysis of array-based, comparative-hybridization data
US7524942B2 (en) * 2006-07-31 2009-04-28 Agilent Technologies, Inc. Labeled nucleotide composition
US20080125979A1 (en) * 2006-10-13 2008-05-29 Zohar Yakhini Method and system for determining ranges for the boundaries of chromosomal aberrations
US8293684B2 (en) * 2006-11-29 2012-10-23 Exiqon Locked nucleic acid reagents for labelling nucleic acids
US8200440B2 (en) * 2007-05-18 2012-06-12 Affymetrix, Inc. System, method, and computer software product for genotype determination using probe array data
CA2710195A1 (en) * 2007-12-28 2009-07-09 Abbott Laboratories Allelic discrimination analysis using an efficiency related value (efr)
EP2406400B1 (en) * 2009-03-09 2016-07-13 Life Technologies Corporation Methods for the determination of a copy number of a genomic sequence in a biological sample
SG184480A1 (en) * 2010-04-09 2012-11-29 Life Technologies Corp VISUALIZATION TOOL FOR qPCR GENOTYPING DATA
JP2016500856A (ja) * 2012-09-14 2016-01-14 ライフ テクノロジーズ コーポレーション デジタルｐｃｒ実験設計器のための方法およびシステム
US9624532B2 (en) * 2013-02-05 2017-04-18 Neil Gordon Ultra-sensitive detection of extremely low level biological analytes using electrochemical signal amplification and biosensor
US20140325418A1 (en) * 2013-04-30 2014-10-30 Microsoft Corporation Automatically manipulating visualized data based on interactivity
US20150058774A1 (en) * 2013-08-22 2015-02-26 Intuit Inc. Gesture-based visualization of financial data
US10372302B2 (en) * 2013-08-29 2019-08-06 Sui Yan Dimension based dynamic determination of visual analytics
US8806361B1 (en) * 2013-09-16 2014-08-12 Splunk Inc. Multi-lane time-synched visualizations of machine data events
US9576263B2 (en) * 2013-09-19 2017-02-21 Oracle International Corporation Contextualized report building
US10489711B1 (en) * 2013-10-22 2019-11-26 EMC IP Holding Company LLC Method and apparatus for predictive behavioral analytics for IT operations
US20150113460A1 (en) * 2013-10-23 2015-04-23 Wal-Mart Stores, Inc. Data Analytics Animation System and Method

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2016127825A (ja) * 2010-04-09 2016-07-14 ライフ テクノロジーズ コーポレーション ｑＰＣＲ遺伝子型決定データ用の視覚化ツール

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Publication number Publication date
EP2556458A2 (en) 2013-02-13
JP2016127825A (ja) 2016-07-14
CN103069427B (zh) 2016-11-23
WO2011127454A3 (en) 2011-12-29
US10629290B2 (en) 2020-04-21
US8572506B2 (en) 2013-10-29
EP2556458B1 (en) 2020-06-03
US20110252353A1 (en) 2011-10-13
JP2013523167A (ja) 2013-06-17
US10127348B2 (en) 2018-11-13
SG184480A1 (en) 2012-11-29
US9390227B2 (en) 2016-07-12
US20170011165A1 (en) 2017-01-12
WO2011127454A2 (en) 2011-10-13
EP2556458A4 (en) 2016-03-16
US20140053095A1 (en) 2014-02-20
US20190130995A1 (en) 2019-05-02
CN103069427A (zh) 2013-04-24

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