JP2016507249A - ナノ構造ベースの核酸配列決定のための方法および組成物 - Google Patents

ナノ構造ベースの核酸配列決定のための方法および組成物 Download PDF

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JP2016507249A
JP2016507249A JP2015558959A JP2015558959A JP2016507249A JP 2016507249 A JP2016507249 A JP 2016507249A JP 2015558959 A JP2015558959 A JP 2015558959A JP 2015558959 A JP2015558959 A JP 2015558959A JP 2016507249 A JP2016507249 A JP 2016507249A
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nucleic acid
acid molecule
target nucleic
sequencing
nanostructure
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JP2016507249A5 (cg-RX-API-DMAC7.html
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テオフィロス コツェログロ
テオフィロス コツェログロ
ステファーノス パパデメトリオ
ステファーノス パパデメトリオ
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イブ バイオメディカル インコーポレイテッド
イブ バイオメディカル インコーポレイテッド
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing

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  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
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  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
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JP2015558959A 2013-02-20 2014-02-20 ナノ構造ベースの核酸配列決定のための方法および組成物 Pending JP2016507249A (ja)

Applications Claiming Priority (3)

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US201361766925P 2013-02-20 2013-02-20
US61/766,925 2013-02-20
PCT/US2014/017419 WO2014130686A2 (en) 2013-02-20 2014-02-20 Methods and compositions for nanostructure-based nucleic acid sequencing

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JP2016507249A true JP2016507249A (ja) 2016-03-10
JP2016507249A5 JP2016507249A5 (cg-RX-API-DMAC7.html) 2017-03-16

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US (2) US9725763B2 (cg-RX-API-DMAC7.html)
EP (1) EP2958927A4 (cg-RX-API-DMAC7.html)
JP (1) JP2016507249A (cg-RX-API-DMAC7.html)
KR (1) KR20150119353A (cg-RX-API-DMAC7.html)
CN (1) CN105308062A (cg-RX-API-DMAC7.html)
AU (1) AU2014218911B2 (cg-RX-API-DMAC7.html)
CA (1) CA2900921A1 (cg-RX-API-DMAC7.html)
HK (1) HK1221227A1 (cg-RX-API-DMAC7.html)
RU (1) RU2015139609A (cg-RX-API-DMAC7.html)
WO (1) WO2014130686A2 (cg-RX-API-DMAC7.html)

Families Citing this family (15)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP6480183B2 (ja) 2011-05-27 2019-03-06 オックスフォード ナノポール テクノロジーズ リミテッド 結合方法
US9708656B2 (en) 2013-05-06 2017-07-18 Pacific Biosciences Of California, Inc. Real-time electronic sequencing
GB201406155D0 (en) 2014-04-04 2014-05-21 Oxford Nanopore Tech Ltd Method
CN106460061B (zh) 2014-04-04 2020-03-06 牛津纳米孔技术公司 在双链核酸分子的两端使用纳米孔和锚分子来表征所述双链核酸的方法
GB201418469D0 (en) * 2014-10-17 2014-12-03 Oxford Nanopore Tech Ltd Method
CN108139345B (zh) 2015-08-06 2021-04-20 加利福尼亚太平洋生物科学股份有限公司 用于选择性寻址稀疏布置的电子测量装置的系统和方法
CN105170209B (zh) * 2015-10-15 2017-05-10 华中科技大学 一种表面图案化修饰的基片及其制备方法
KR102796872B1 (ko) * 2016-01-28 2025-04-15 로스웰 엠이 아이엔씨. 대규모 분자 전자소자 센서 어레이들을 이용하여 분석물들을 측정하는 방법들 및 장치
KR102184637B1 (ko) * 2016-08-04 2020-11-30 연세대학교 원주산학협력단 퀀타매트릭스 어세이 플랫폼 기반 결핵 및 비결핵 항산균의 검출 및 동정과 결핵균의 리팜핀 내성여부를 동시 확인할 수 있는 진단법 및 그 키트
CN106244712B (zh) * 2016-08-31 2019-11-19 北京大学 Dna测序方法
KR102601324B1 (ko) * 2017-01-19 2023-11-10 로스웰 바이오테크놀로지스 인코포레이티드 2차원 레이어 재료를 포함하는 솔리드 스테이트 시퀀싱 디바이스들
JP6559814B2 (ja) * 2018-01-26 2019-08-14 株式会社日立ハイテクノロジーズ 生体分子測定方法
MX2020014059A (es) * 2019-06-18 2021-05-27 Illumina Inc Acoplamiento de polimerasa a un canal conductor.
CN110452817A (zh) * 2019-07-08 2019-11-15 广东工业大学 一种dna测序装置及测序方法
CN111455034B (zh) * 2020-04-09 2024-04-09 苏州罗岛纳米科技有限公司 一种基于固态纳米孔机构的单分子检测方法和系统

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2012083249A2 (en) * 2010-12-17 2012-06-21 The Trustees Of Columbia University In The City Of New York Dna sequencing by synthesis using modified nucleotides and nanopore detection
WO2012164270A1 (en) * 2011-05-27 2012-12-06 Oxford Nanopore Technologies Limited Coupling method

Family Cites Families (25)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5693489A (en) 1984-03-30 1997-12-02 Associated Universities, Inc. Cloning and expression of the gene for bacteriophage T7 RNA polymerase
US5795782A (en) * 1995-03-17 1998-08-18 President & Fellows Of Harvard College Characterization of individual polymer molecules based on monomer-interface interactions
US20020172953A1 (en) 1996-07-29 2002-11-21 Mirkin Chad A. Movement of biomolecule-coated nanoparticles in an electric field
WO2000036151A1 (en) 1998-12-14 2000-06-22 Li-Cor, Inc. A heterogeneous assay for pyrophosphate detection
US6529240B2 (en) 1999-11-18 2003-03-04 Agilent Technologies, Inc. Random access memory integrated with CMOS sensors
US7238477B2 (en) * 2001-09-24 2007-07-03 Intel Corporation Methods to increase nucleotide signals by Raman scattering
EP1594987B1 (en) * 2003-02-21 2009-05-27 GeneForm Technologies Limited Nucleic acid sequencing methods, kits and reagents
US20070077575A1 (en) 2004-03-05 2007-04-05 Mcallister William T Use of rna polymerase as an information-dependent molecular motor
US7238485B2 (en) * 2004-03-23 2007-07-03 President And Fellows Of Harvard College Methods and apparatus for characterizing polynucleotides
US7556922B2 (en) * 2006-03-23 2009-07-07 The Board Of Trustees Of The Leland Stanford Junior University Motion resolved molecular sequencing
EP2156179B1 (en) * 2007-04-04 2021-08-18 The Regents of The University of California Methods for using a nanopore
US9395352B2 (en) * 2007-04-06 2016-07-19 Arizona Board Of Regents On Behalf Of Arizona State University Devices and methods for target molecule characterization
WO2009073201A2 (en) 2007-12-04 2009-06-11 Pacific Biosciences Of California, Inc. Alternate labeling strategies for single molecule sequencing
US8815576B2 (en) 2007-12-27 2014-08-26 Lawrence Livermore National Security, Llc. Chip-based sequencing nucleic acids
US8628649B2 (en) * 2008-03-18 2014-01-14 Arizona Board Of Regents Acting For And On Behalf Of Arizona State University Nanopore and carbon nanotube based DNA sequencer and a serial recognition sequencer
US20110014612A1 (en) * 2009-03-27 2011-01-20 Life Technologies Corporation Polymerase compositions & methods
US9017937B1 (en) * 2009-04-10 2015-04-28 Pacific Biosciences Of California, Inc. Nanopore sequencing using ratiometric impedance
CN102834527B (zh) * 2010-02-23 2015-06-03 华盛顿大学 用纳米孔的分析物测序
WO2012033524A2 (en) * 2010-09-07 2012-03-15 The Regents Of The University Of California Control of dna movement in a nanopore at one nucleotide precision by a processive enzyme
AU2012220546B2 (en) * 2011-02-23 2017-02-23 Eve Biomedical, Inc. Rotation-dependent transcriptional sequencing systems and methods of using
CA2843136C (en) * 2011-07-25 2020-12-29 Oxford Nanopore Technologies Limited Hairpin loop method for double strand polynucleotide sequencing using transmembrane pores
US9164053B2 (en) * 2011-09-26 2015-10-20 The Regents Of The University Of California Electronic device for monitoring single molecule dynamics
US9279154B2 (en) * 2011-12-21 2016-03-08 Illumina, Inc. Apparatus and methods for kinetic analysis and determination of nucleic acid sequences
US9116118B2 (en) * 2012-06-08 2015-08-25 Pacific Biosciences Of California, Inc. Modified base detection with nanopore sequencing
US20140147833A1 (en) * 2012-11-28 2014-05-29 International Business Machines Corporation Base recognition based on the conformation change of a motor molecule

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2012083249A2 (en) * 2010-12-17 2012-06-21 The Trustees Of Columbia University In The City Of New York Dna sequencing by synthesis using modified nucleotides and nanopore detection
WO2012164270A1 (en) * 2011-05-27 2012-12-06 Oxford Nanopore Technologies Limited Coupling method

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WO2014130686A2 (en) 2014-08-28
US20180010181A1 (en) 2018-01-11
EP2958927A4 (en) 2016-09-14
US20140235462A1 (en) 2014-08-21
CN105308062A (zh) 2016-02-03
WO2014130686A3 (en) 2014-10-09
AU2014218911B2 (en) 2018-07-12
EP2958927A2 (en) 2015-12-30
CA2900921A1 (en) 2014-08-28
RU2015139609A (ru) 2017-03-24
KR20150119353A (ko) 2015-10-23
US9725763B2 (en) 2017-08-08
HK1221227A1 (zh) 2017-05-26
AU2014218911A1 (en) 2015-08-27

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