JP2016507249A - ナノ構造ベースの核酸配列決定のための方法および組成物 - Google Patents

ナノ構造ベースの核酸配列決定のための方法および組成物 Download PDF

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JP2016507249A
JP2016507249A JP2015558959A JP2015558959A JP2016507249A JP 2016507249 A JP2016507249 A JP 2016507249A JP 2015558959 A JP2015558959 A JP 2015558959A JP 2015558959 A JP2015558959 A JP 2015558959A JP 2016507249 A JP2016507249 A JP 2016507249A
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nucleic acid
acid molecule
target nucleic
sequencing
nanostructure
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JP2016507249A5 (cg-RX-API-DMAC10.html
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テオフィロス コツェログロ
テオフィロス コツェログロ
ステファーノス パパデメトリオ
ステファーノス パパデメトリオ
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イブ バイオメディカル インコーポレイテッド
イブ バイオメディカル インコーポレイテッド
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing

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  • Life Sciences & Earth Sciences (AREA)
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  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
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  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
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  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
JP2015558959A 2013-02-20 2014-02-20 ナノ構造ベースの核酸配列決定のための方法および組成物 Pending JP2016507249A (ja)

Applications Claiming Priority (3)

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US201361766925P 2013-02-20 2013-02-20
US61/766,925 2013-02-20
PCT/US2014/017419 WO2014130686A2 (en) 2013-02-20 2014-02-20 Methods and compositions for nanostructure-based nucleic acid sequencing

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JP2016507249A true JP2016507249A (ja) 2016-03-10
JP2016507249A5 JP2016507249A5 (cg-RX-API-DMAC10.html) 2017-03-16

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US (2) US9725763B2 (cg-RX-API-DMAC10.html)
EP (1) EP2958927A4 (cg-RX-API-DMAC10.html)
JP (1) JP2016507249A (cg-RX-API-DMAC10.html)
KR (1) KR20150119353A (cg-RX-API-DMAC10.html)
CN (1) CN105308062A (cg-RX-API-DMAC10.html)
AU (1) AU2014218911B2 (cg-RX-API-DMAC10.html)
CA (1) CA2900921A1 (cg-RX-API-DMAC10.html)
HK (1) HK1221227A1 (cg-RX-API-DMAC10.html)
RU (1) RU2015139609A (cg-RX-API-DMAC10.html)
WO (1) WO2014130686A2 (cg-RX-API-DMAC10.html)

Families Citing this family (16)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
SG10201604316WA (en) 2011-05-27 2016-07-28 Oxford Nanopore Tech Ltd Coupling method
CN111187811B (zh) 2013-05-06 2024-03-08 加利福尼亚太平洋生物科学股份有限公司 实时电子测序
GB201406155D0 (en) 2014-04-04 2014-05-21 Oxford Nanopore Tech Ltd Method
US10337060B2 (en) 2014-04-04 2019-07-02 Oxford Nanopore Technologies Ltd. Method for characterising a double stranded nucleic acid using a nano-pore and anchor molecules at both ends of said nucleic acid
GB201418469D0 (en) * 2014-10-17 2014-12-03 Oxford Nanopore Tech Ltd Method
EP3332033B1 (en) 2015-08-06 2021-04-21 Pacific Biosciences of California, Inc. Single-molecule nanofet sequencing systems and methods
CN105170209B (zh) * 2015-10-15 2017-05-10 华中科技大学 一种表面图案化修饰的基片及其制备方法
EP3408220A4 (en) * 2016-01-28 2019-09-04 Roswell Biotechnologies, Inc METHOD AND DEVICE FOR MEASURING ANALYTES USING LARGE CALCULAR MOLECULAR ELECTRONIC SENSOR ARRAYS
CN110168109B (zh) * 2016-08-04 2022-09-20 致优制药株式会社 检测及鉴定结核菌和非结核菌感染的诊断方法及结核杆菌对利凡平耐药性的确认及其试剂组
CN106244712B (zh) * 2016-08-31 2019-11-19 北京大学 Dna测序方法
KR102685937B1 (ko) * 2017-01-19 2024-07-17 로스웰 엠이 아이엔씨. 2차원 레이어 재료를 포함하는 솔리드 스테이트 시퀀싱 디바이스들
JP6559814B2 (ja) * 2018-01-26 2019-08-14 株式会社日立ハイテクノロジーズ 生体分子測定方法
AU2020298079A1 (en) * 2019-06-18 2021-01-21 Illumina, Inc. Polymerase attachment to a conductive channel
CN110452817A (zh) * 2019-07-08 2019-11-15 广东工业大学 一种dna测序装置及测序方法
CN111455034B (zh) * 2020-04-09 2024-04-09 苏州罗岛纳米科技有限公司 一种基于固态纳米孔机构的单分子检测方法和系统
CN116783305A (zh) * 2020-09-25 2023-09-19 新加坡国立大学 具有可调功能稳定性的核酸纳米结构

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2012083249A2 (en) * 2010-12-17 2012-06-21 The Trustees Of Columbia University In The City Of New York Dna sequencing by synthesis using modified nucleotides and nanopore detection
WO2012164270A1 (en) * 2011-05-27 2012-12-06 Oxford Nanopore Technologies Limited Coupling method

Family Cites Families (25)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5693489A (en) 1984-03-30 1997-12-02 Associated Universities, Inc. Cloning and expression of the gene for bacteriophage T7 RNA polymerase
US5795782A (en) * 1995-03-17 1998-08-18 President & Fellows Of Harvard College Characterization of individual polymer molecules based on monomer-interface interactions
US20020172953A1 (en) * 1996-07-29 2002-11-21 Mirkin Chad A. Movement of biomolecule-coated nanoparticles in an electric field
WO2000036152A1 (en) 1998-12-14 2000-06-22 Li-Cor, Inc. A system and methods for nucleic acid sequencing of single molecules by polymerase synthesis
US6529240B2 (en) 1999-11-18 2003-03-04 Agilent Technologies, Inc. Random access memory integrated with CMOS sensors
US7238477B2 (en) 2001-09-24 2007-07-03 Intel Corporation Methods to increase nucleotide signals by Raman scattering
WO2004074503A2 (en) * 2003-02-21 2004-09-02 Hoser Mark J Nucleic acid sequencing methods, kits and reagents
US20070077575A1 (en) 2004-03-05 2007-04-05 Mcallister William T Use of rna polymerase as an information-dependent molecular motor
WO2006028508A2 (en) * 2004-03-23 2006-03-16 President And Fellows Of Harvard College Methods and apparatus for characterizing polynucleotides
US7556922B2 (en) 2006-03-23 2009-07-07 The Board Of Trustees Of The Leland Stanford Junior University Motion resolved molecular sequencing
WO2008124107A1 (en) * 2007-04-04 2008-10-16 The Regents Of The University Of California Compositions, devices, systems, and methods for using a nanopore
US9395352B2 (en) * 2007-04-06 2016-07-19 Arizona Board Of Regents On Behalf Of Arizona State University Devices and methods for target molecule characterization
WO2009073201A2 (en) 2007-12-04 2009-06-11 Pacific Biosciences Of California, Inc. Alternate labeling strategies for single molecule sequencing
US8815576B2 (en) 2007-12-27 2014-08-26 Lawrence Livermore National Security, Llc. Chip-based sequencing nucleic acids
US8628649B2 (en) * 2008-03-18 2014-01-14 Arizona Board Of Regents Acting For And On Behalf Of Arizona State University Nanopore and carbon nanotube based DNA sequencer and a serial recognition sequencer
WO2010111674A2 (en) 2009-03-27 2010-09-30 Life Technologies Corporation Methods and apparatus for single molecule sequencing using energy transfer detection
US9017937B1 (en) * 2009-04-10 2015-04-28 Pacific Biosciences Of California, Inc. Nanopore sequencing using ratiometric impedance
ES2978883T3 (es) * 2010-02-23 2024-09-23 Univ Washington Secuenciación de analitos con nanoporos
EP2614156B1 (en) * 2010-09-07 2018-08-01 The Regents of The University of California Control of dna movement in a nanopore at one nucleotide precision by a processive enzyme
RU2636460C2 (ru) * 2011-02-23 2017-11-23 Ив Байомедикал, Инк. Системы и способы применения зависящего от вращения транскрипционного секвенирования
KR20140050067A (ko) 2011-07-25 2014-04-28 옥스포드 나노포어 테크놀로지즈 리미티드 막횡단 포어를 사용한 이중 가닥 폴리뉴클레오티드 서열분석을 위한 헤어핀 루프 방법
US9164053B2 (en) * 2011-09-26 2015-10-20 The Regents Of The University Of California Electronic device for monitoring single molecule dynamics
WO2013096692A1 (en) * 2011-12-21 2013-06-27 Illumina, Inc. Apparatus and methods for kinetic analysis and determination of nucleic acid sequences
GB2559073A (en) * 2012-06-08 2018-07-25 Pacific Biosciences California Inc Modified base detection with nanopore sequencing
US20140147833A1 (en) * 2012-11-28 2014-05-29 International Business Machines Corporation Base recognition based on the conformation change of a motor molecule

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2012083249A2 (en) * 2010-12-17 2012-06-21 The Trustees Of Columbia University In The City Of New York Dna sequencing by synthesis using modified nucleotides and nanopore detection
WO2012164270A1 (en) * 2011-05-27 2012-12-06 Oxford Nanopore Technologies Limited Coupling method

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KR20150119353A (ko) 2015-10-23
US20140235462A1 (en) 2014-08-21
US9725763B2 (en) 2017-08-08
AU2014218911A1 (en) 2015-08-27
EP2958927A4 (en) 2016-09-14
US20180010181A1 (en) 2018-01-11
WO2014130686A2 (en) 2014-08-28
WO2014130686A3 (en) 2014-10-09
CA2900921A1 (en) 2014-08-28
RU2015139609A (ru) 2017-03-24
AU2014218911B2 (en) 2018-07-12
EP2958927A2 (en) 2015-12-30
HK1221227A1 (zh) 2017-05-26
CN105308062A (zh) 2016-02-03

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