JP2014502513A5 - - Google Patents
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- JP2014502513A5 JP2014502513A5 JP2013549380A JP2013549380A JP2014502513A5 JP 2014502513 A5 JP2014502513 A5 JP 2014502513A5 JP 2013549380 A JP2013549380 A JP 2013549380A JP 2013549380 A JP2013549380 A JP 2013549380A JP 2014502513 A5 JP2014502513 A5 JP 2014502513A5
- Authority
- JP
- Japan
- Prior art keywords
- restriction enzyme
- adapter
- fragment
- primer
- sample
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Withdrawn
Links
- 238000000034 method Methods 0.000 claims 16
- 239000012634 fragment Substances 0.000 claims 14
- 108091008146 restriction endonucleases Proteins 0.000 claims 11
- 238000003776 cleavage reaction Methods 0.000 claims 6
- 230000007017 scission Effects 0.000 claims 6
- 230000000295 complement effect Effects 0.000 claims 4
- 102000054765 polymorphisms of proteins Human genes 0.000 claims 3
- 239000002773 nucleotide Substances 0.000 claims 2
- 125000003729 nucleotide group Chemical group 0.000 claims 2
- 238000012175 pyrosequencing Methods 0.000 claims 2
- 238000012163 sequencing technique Methods 0.000 claims 2
- 238000001514 detection method Methods 0.000 claims 1
- 230000009977 dual effect Effects 0.000 claims 1
- 238000007672 fourth generation sequencing Methods 0.000 claims 1
- 238000003205 genotyping method Methods 0.000 claims 1
- 238000012165 high-throughput sequencing Methods 0.000 claims 1
- 238000000126 in silico method Methods 0.000 claims 1
- 239000007787 solid Substances 0.000 claims 1
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201161432915P | 2011-01-14 | 2011-01-14 | |
| US61/432,915 | 2011-01-14 | ||
| PCT/NL2012/050022 WO2012096579A2 (en) | 2011-01-14 | 2012-01-13 | Paired end random sequence based genotyping |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| JP2014502513A JP2014502513A (ja) | 2014-02-03 |
| JP2014502513A5 true JP2014502513A5 (https=) | 2014-10-02 |
Family
ID=45567083
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2013549380A Withdrawn JP2014502513A (ja) | 2011-01-14 | 2012-01-13 | ペアエンドランダムシーケンスに基づく遺伝子型解析 |
Country Status (9)
| Country | Link |
|---|---|
| US (1) | US20130331277A1 (https=) |
| EP (1) | EP2663655B1 (https=) |
| JP (1) | JP2014502513A (https=) |
| KR (1) | KR20140040697A (https=) |
| CN (1) | CN103476946A (https=) |
| AU (1) | AU2012205884A1 (https=) |
| CA (1) | CA2823815A1 (https=) |
| IL (1) | IL227411A0 (https=) |
| WO (1) | WO2012096579A2 (https=) |
Families Citing this family (31)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US9116866B2 (en) | 2013-08-21 | 2015-08-25 | Seven Bridges Genomics Inc. | Methods and systems for detecting sequence variants |
| US9898575B2 (en) | 2013-08-21 | 2018-02-20 | Seven Bridges Genomics Inc. | Methods and systems for aligning sequences |
| US11049587B2 (en) | 2013-10-18 | 2021-06-29 | Seven Bridges Genomics Inc. | Methods and systems for aligning sequences in the presence of repeating elements |
| WO2015058095A1 (en) | 2013-10-18 | 2015-04-23 | Seven Bridges Genomics Inc. | Methods and systems for quantifying sequence alignment |
| JP2017500004A (ja) | 2013-10-18 | 2017-01-05 | セブン ブリッジズ ジェノミクス インコーポレイテッド | 遺伝子試料について遺伝子型解析するための方法およびシステム |
| AU2014337093B2 (en) | 2013-10-18 | 2020-07-30 | Seven Bridges Genomics Inc. | Methods and systems for identifying disease-induced mutations |
| US9063914B2 (en) | 2013-10-21 | 2015-06-23 | Seven Bridges Genomics Inc. | Systems and methods for transcriptome analysis |
| US9817944B2 (en) | 2014-02-11 | 2017-11-14 | Seven Bridges Genomics Inc. | Systems and methods for analyzing sequence data |
| JP6198659B2 (ja) * | 2014-04-03 | 2017-09-20 | 株式会社日立ハイテクノロジーズ | 配列データ解析装置、ｄｎａ解析システムおよび配列データ解析方法 |
| JP2018504899A (ja) * | 2014-12-24 | 2018-02-22 | キージーン・エン・フェー | 主鎖媒介性メイトペアシーケンシング |
| JP6691871B2 (ja) * | 2015-01-16 | 2020-05-13 | 国立研究開発法人国立がん研究センター | 融合遺伝子解析装置、融合遺伝子解析方法、及びプログラム |
| US10192026B2 (en) | 2015-03-05 | 2019-01-29 | Seven Bridges Genomics Inc. | Systems and methods for genomic pattern analysis |
| WO2016143062A1 (ja) * | 2015-03-10 | 2016-09-15 | 株式会社日立ハイテクノロジーズ | 配列データ解析装置、ｄｎａ解析システムおよび配列データ解析方法 |
| US10793895B2 (en) | 2015-08-24 | 2020-10-06 | Seven Bridges Genomics Inc. | Systems and methods for epigenetic analysis |
| US10584380B2 (en) | 2015-09-01 | 2020-03-10 | Seven Bridges Genomics Inc. | Systems and methods for mitochondrial analysis |
| US10724110B2 (en) | 2015-09-01 | 2020-07-28 | Seven Bridges Genomics Inc. | Systems and methods for analyzing viral nucleic acids |
| US11347704B2 (en) | 2015-10-16 | 2022-05-31 | Seven Bridges Genomics Inc. | Biological graph or sequence serialization |
| US20180320169A1 (en) * | 2015-11-17 | 2018-11-08 | Nanjing Annoroad Gene Technology Co. Ltd | Method for constructing dna library for sequencing |
| US20170199960A1 (en) | 2016-01-07 | 2017-07-13 | Seven Bridges Genomics Inc. | Systems and methods for adaptive local alignment for graph genomes |
| US10364468B2 (en) | 2016-01-13 | 2019-07-30 | Seven Bridges Genomics Inc. | Systems and methods for analyzing circulating tumor DNA |
| US10460829B2 (en) | 2016-01-26 | 2019-10-29 | Seven Bridges Genomics Inc. | Systems and methods for encoding genetic variation for a population |
| US10262102B2 (en) | 2016-02-24 | 2019-04-16 | Seven Bridges Genomics Inc. | Systems and methods for genotyping with graph reference |
| US10790044B2 (en) | 2016-05-19 | 2020-09-29 | Seven Bridges Genomics Inc. | Systems and methods for sequence encoding, storage, and compression |
| US10600499B2 (en) | 2016-07-13 | 2020-03-24 | Seven Bridges Genomics Inc. | Systems and methods for reconciling variants in sequence data relative to reference sequence data |
| US11289177B2 (en) | 2016-08-08 | 2022-03-29 | Seven Bridges Genomics, Inc. | Computer method and system of identifying genomic mutations using graph-based local assembly |
| US11250931B2 (en) | 2016-09-01 | 2022-02-15 | Seven Bridges Genomics Inc. | Systems and methods for detecting recombination |
| CN107858408A (zh) * | 2016-09-19 | 2018-03-30 | 深圳华大基因科技服务有限公司 | 一种基因组二代序列组装方法和系统 |
| US11347844B2 (en) | 2017-03-01 | 2022-05-31 | Seven Bridges Genomics, Inc. | Data security in bioinformatic sequence analysis |
| US10726110B2 (en) | 2017-03-01 | 2020-07-28 | Seven Bridges Genomics, Inc. | Watermarking for data security in bioinformatic sequence analysis |
| US12046325B2 (en) | 2018-02-14 | 2024-07-23 | Seven Bridges Genomics Inc. | System and method for sequence identification in reassembly variant calling |
| CN112176419B (zh) * | 2019-10-16 | 2022-03-22 | 中国医学科学院肿瘤医院 | 一种检测ctDNA中肿瘤特异基因的变异和甲基化的方法 |
Family Cites Families (16)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| IL103267A (en) | 1991-09-24 | 2004-07-25 | Keygene Nv | Process and kit for amplification of restriction fragment obtained from starting dna |
| WO2000024939A1 (en) | 1998-10-27 | 2000-05-04 | Affymetrix, Inc. | Complexity management and analysis of genomic dna |
| US6958225B2 (en) | 1999-10-27 | 2005-10-25 | Affymetrix, Inc. | Complexity management of genomic DNA |
| EP1417475A4 (en) | 2001-07-06 | 2006-06-28 | 454 Corp | METHOD FOR ISOLATING INDEPENDENT, PARALLEL CHEMICAL MICRORE ACTIONS USING A POROUS FILTER |
| US6975943B2 (en) | 2001-09-24 | 2005-12-13 | Seqwright, Inc. | Clone-array pooled shotgun strategy for nucleic acid sequencing |
| US6902921B2 (en) | 2001-10-30 | 2005-06-07 | 454 Corporation | Sulfurylase-luciferase fusion proteins and thermostable sulfurylase |
| WO2005003375A2 (en) | 2003-01-29 | 2005-01-13 | 454 Corporation | Methods of amplifying and sequencing nucleic acids |
| US7575865B2 (en) * | 2003-01-29 | 2009-08-18 | 454 Life Sciences Corporation | Methods of amplifying and sequencing nucleic acids |
| US8222005B2 (en) * | 2003-09-17 | 2012-07-17 | Agency For Science, Technology And Research | Method for gene identification signature (GIS) analysis |
| ES2393318T3 (es) * | 2005-06-23 | 2012-12-20 | Keygene N.V. | Estrategias para la identificación y detección de alto rendimiento de polimorfismos |
| DK1966393T3 (da) * | 2005-12-22 | 2012-10-08 | Keygene Nv | Fremgangsmåde til AFLP-baseret påvisning af polymorfisme med høj omsætning |
| US7754429B2 (en) * | 2006-10-06 | 2010-07-13 | Illumina Cambridge Limited | Method for pair-wise sequencing a plurity of target polynucleotides |
| WO2009046094A1 (en) | 2007-10-01 | 2009-04-09 | Nabsys, Inc. | Biopolymer sequencing by hybridization of probes to form ternary complexes and variable range alignment |
| JP5717634B2 (ja) | 2008-09-03 | 2015-05-13 | ナブシス， インコーポレイテッド | 流体チャネル内の生体分子および他の分析物の電圧感知のための、長手方向に変位されるナノスケールの電極の使用 |
| US8262879B2 (en) | 2008-09-03 | 2012-09-11 | Nabsys, Inc. | Devices and methods for determining the length of biopolymers and distances between probes bound thereto |
| US8481699B2 (en) * | 2009-07-14 | 2013-07-09 | Academia Sinica | Multiplex barcoded Paired-End ditag (mbPED) library construction for ultra high throughput sequencing |
-
2012
- 2012-01-13 EP EP12702895.9A patent/EP2663655B1/en not_active Not-in-force
- 2012-01-13 AU AU2012205884A patent/AU2012205884A1/en not_active Abandoned
- 2012-01-13 KR KR1020137021562A patent/KR20140040697A/ko not_active Withdrawn
- 2012-01-13 JP JP2013549380A patent/JP2014502513A/ja not_active Withdrawn
- 2012-01-13 WO PCT/NL2012/050022 patent/WO2012096579A2/en not_active Ceased
- 2012-01-13 CA CA2823815A patent/CA2823815A1/en not_active Abandoned
- 2012-01-13 CN CN2012800053582A patent/CN103476946A/zh active Pending
- 2012-01-13 US US13/978,824 patent/US20130331277A1/en not_active Abandoned
-
2013
- 2013-07-10 IL IL227411A patent/IL227411A0/en unknown
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