JP2013211043A5 - - Google Patents

Download PDF

Info

Publication number
JP2013211043A5
JP2013211043A5 JP2013114005A JP2013114005A JP2013211043A5 JP 2013211043 A5 JP2013211043 A5 JP 2013211043A5 JP 2013114005 A JP2013114005 A JP 2013114005A JP 2013114005 A JP2013114005 A JP 2013114005A JP 2013211043 A5 JP2013211043 A5 JP 2013211043A5
Authority
JP
Japan
Prior art keywords
program code
template molecule
method performed
code comprises
value
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
JP2013114005A
Other languages
English (en)
Japanese (ja)
Other versions
JP2013211043A (ja
JP5746265B2 (ja
Filing date
Publication date
Application filed filed Critical
Publication of JP2013211043A publication Critical patent/JP2013211043A/ja
Publication of JP2013211043A5 publication Critical patent/JP2013211043A5/ja
Application granted granted Critical
Publication of JP5746265B2 publication Critical patent/JP5746265B2/ja
Expired - Fee Related legal-status Critical Current
Anticipated expiration legal-status Critical

Links

JP2013114005A 2006-02-16 2013-05-30 核酸配列データのプライマー伸長誤差を補正するためのシステムおよび方法 Expired - Fee Related JP5746265B2 (ja)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US77435406P 2006-02-16 2006-02-16
US60/774,354 2006-02-16

Related Parent Applications (1)

Application Number Title Priority Date Filing Date
JP2008555390A Division JP5808515B2 (ja) 2006-02-16 2007-02-15 核酸配列データのプライマー伸長誤差を補正するためのシステムおよび方法

Publications (3)

Publication Number Publication Date
JP2013211043A JP2013211043A (ja) 2013-10-10
JP2013211043A5 true JP2013211043A5 (https=) 2014-07-24
JP5746265B2 JP5746265B2 (ja) 2015-07-08

Family

ID=38437895

Family Applications (2)

Application Number Title Priority Date Filing Date
JP2008555390A Expired - Fee Related JP5808515B2 (ja) 2006-02-16 2007-02-15 核酸配列データのプライマー伸長誤差を補正するためのシステムおよび方法
JP2013114005A Expired - Fee Related JP5746265B2 (ja) 2006-02-16 2013-05-30 核酸配列データのプライマー伸長誤差を補正するためのシステムおよび方法

Family Applications Before (1)

Application Number Title Priority Date Filing Date
JP2008555390A Expired - Fee Related JP5808515B2 (ja) 2006-02-16 2007-02-15 核酸配列データのプライマー伸長誤差を補正するためのシステムおよび方法

Country Status (7)

Country Link
US (2) US8301394B2 (https=)
EP (2) EP2578702A1 (https=)
JP (2) JP5808515B2 (https=)
CN (1) CN101390101B (https=)
CA (1) CA2637617C (https=)
ES (1) ES2626620T3 (https=)
WO (1) WO2007098049A2 (https=)

Families Citing this family (54)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2005003375A2 (en) 2003-01-29 2005-01-13 454 Corporation Methods of amplifying and sequencing nucleic acids
ES2626620T3 (es) 2006-02-16 2017-07-25 454 Life Sciences Corporation Sistema y método para corregir errores de extensión de cebadores en datos de secuencias de ácidos nucleicos
US8364417B2 (en) * 2007-02-15 2013-01-29 454 Life Sciences Corporation System and method to correct out of phase errors in DNA sequencing data by use of a recursive algorithm
US8407554B2 (en) * 2009-02-03 2013-03-26 Complete Genomics, Inc. Method and apparatus for quantification of DNA sequencing quality and construction of a characterizable model system using Reed-Solomon codes
TWI439548B (zh) * 2009-12-23 2014-06-01 Ind Tech Res Inst 序列校正方法與序列校正裝置
US9194838B2 (en) 2010-03-03 2015-11-24 Osaka University Method and device for identifying nucleotide, and method and device for determining nucleotide sequence of polynucleotide
EP2952590B1 (en) 2010-06-11 2017-07-26 Life Technologies Corporation Alternative nucleotide flows in sequencing-by-synthesis methods
NZ610129A (en) 2010-10-04 2014-08-29 Genapsys Inc Systems and methods for automated reusable parallel biological reactions
US9399217B2 (en) 2010-10-04 2016-07-26 Genapsys, Inc. Chamber free nanoreactor system
US9184099B2 (en) 2010-10-04 2015-11-10 The Board Of Trustees Of The Leland Stanford Junior University Biosensor devices, systems and methods therefor
EP2633470B1 (en) * 2010-10-27 2016-10-26 Life Technologies Corporation Predictive model for use in sequencing-by-synthesis
US10273540B2 (en) 2010-10-27 2019-04-30 Life Technologies Corporation Methods and apparatuses for estimating parameters in a predictive model for use in sequencing-by-synthesis
WO2012071434A2 (en) * 2010-11-22 2012-05-31 Life Technologies Corporation Model-based residual correction of intensities
WO2012118555A1 (en) 2010-12-29 2012-09-07 Life Technologies Corporation Time-warped background signal for sequencing-by-synthesis operations
US20130060482A1 (en) 2010-12-30 2013-03-07 Life Technologies Corporation Methods, systems, and computer readable media for making base calls in nucleic acid sequencing
WO2012092455A2 (en) 2010-12-30 2012-07-05 Life Technologies Corporation Models for analyzing data from sequencing-by-synthesis operations
WO2012092515A2 (en) 2010-12-30 2012-07-05 Life Technologies Corporation Methods, systems, and computer readable media for nucleic acid sequencing
WO2012138921A1 (en) 2011-04-08 2012-10-11 Life Technologies Corporation Phase-protecting reagent flow orderings for use in sequencing-by-synthesis
US8585973B2 (en) 2011-05-27 2013-11-19 The Board Of Trustees Of The Leland Stanford Junior University Nano-sensor array
US9926596B2 (en) 2011-05-27 2018-03-27 Genapsys, Inc. Systems and methods for genetic and biological analysis
KR101940833B1 (ko) * 2011-05-27 2019-01-21 제납시스 인크. 유전자 및 생물학적 분석을 위한 시스템 및 방법
US10704164B2 (en) 2011-08-31 2020-07-07 Life Technologies Corporation Methods, systems, computer readable media, and kits for sample identification
US20150087537A1 (en) 2011-08-31 2015-03-26 Life Technologies Corporation Methods, Systems, Computer Readable Media, and Kits for Sample Identification
US10093975B2 (en) 2011-12-01 2018-10-09 Genapsys, Inc. Systems and methods for high efficiency electronic sequencing and detection
US9646132B2 (en) 2012-05-11 2017-05-09 Life Technologies Corporation Models for analyzing data from sequencing-by-synthesis operations
US10192024B2 (en) 2012-05-18 2019-01-29 454 Life Sciences Corporation System and method for generation and use of optimal nucleotide flow orders
CA2882001A1 (en) 2012-08-17 2014-02-20 Osaka University Sample analysis method
US10329608B2 (en) 2012-10-10 2019-06-25 Life Technologies Corporation Methods, systems, and computer readable media for repeat sequencing
JP6282036B2 (ja) 2012-12-27 2018-02-21 クオンタムバイオシステムズ株式会社 物質の移動速度の制御方法および制御装置
US9146248B2 (en) 2013-03-14 2015-09-29 Intelligent Bio-Systems, Inc. Apparatus and methods for purging flow cells in nucleic acid sequencing instruments
US20140296080A1 (en) 2013-03-14 2014-10-02 Life Technologies Corporation Methods, Systems, and Computer Readable Media for Evaluating Variant Likelihood
EP2971141B1 (en) 2013-03-15 2018-11-28 Genapsys, Inc. Systems for biological analysis
US9591268B2 (en) 2013-03-15 2017-03-07 Qiagen Waltham, Inc. Flow cell alignment methods and systems
US9926597B2 (en) 2013-07-26 2018-03-27 Life Technologies Corporation Control nucleic acid sequences for use in sequencing-by-synthesis and methods for designing the same
EP2840148B1 (en) 2013-08-23 2019-04-03 F. Hoffmann-La Roche AG Methods for nucleic acid amplification
EP3047282B1 (en) 2013-09-18 2019-05-15 Quantum Biosystems Inc. Biomolecule sequencing devices, systems and methods
US10410739B2 (en) 2013-10-04 2019-09-10 Life Technologies Corporation Methods and systems for modeling phasing effects in sequencing using termination chemistry
JP2015077652A (ja) 2013-10-16 2015-04-23 クオンタムバイオシステムズ株式会社 ナノギャップ電極およびその製造方法
WO2015062184A1 (en) 2013-11-01 2015-05-07 Accurascience, Llc Method and apparatus for calling single-nucleotide variations and other variations
US20160026756A1 (en) * 2013-11-01 2016-01-28 Origenome, Llc Method and apparatus for separating quality levels in sequence data and sequencing longer reads
WO2015089238A1 (en) 2013-12-11 2015-06-18 Genapsys, Inc. Systems and methods for biological analysis and computation
US10438811B1 (en) 2014-04-15 2019-10-08 Quantum Biosystems Inc. Methods for forming nano-gap electrodes for use in nanosensors
US9822401B2 (en) 2014-04-18 2017-11-21 Genapsys, Inc. Methods and systems for nucleic acid amplification
WO2016060974A1 (en) 2014-10-13 2016-04-21 Life Technologies Corporation Methods, systems, and computer-readable media for accelerated base calling
EP3295345B1 (en) 2015-05-14 2023-01-25 Life Technologies Corporation Barcode sequences, and related systems and methods
CN107958138B (zh) * 2016-10-14 2019-06-18 赛纳生物科技(北京)有限公司 一种从高通量dna测序的原始信号中读取序列信息的方法
CN116426621A (zh) * 2015-11-19 2023-07-14 赛纳生物科技(北京)有限公司 一种校正测序信息错误的方法
ES2877193T3 (es) 2016-04-27 2021-11-16 Quantum Biosystems Inc Sistemas y métodos para la medición y secuenciación de biomoléculas
US10619205B2 (en) 2016-05-06 2020-04-14 Life Technologies Corporation Combinatorial barcode sequences, and related systems and methods
WO2018017884A1 (en) 2016-07-20 2018-01-25 Genapsys, Inc. Systems and methods for nucleic acid sequencing
WO2019060628A1 (en) 2017-09-21 2019-03-28 Genapsys, Inc. SYSTEMS AND METHODS FOR NUCLEIC ACID SEQUENCING
CN114096682B (zh) 2019-05-03 2025-06-13 阿尔缇玛基因组学公司 通过合成方法的快进测序
CN114420214B (zh) * 2022-01-28 2026-02-27 赛纳生物科技(北京)有限公司 核酸测序数据的质量评估方法和筛选方法
CN116825189A (zh) * 2023-06-29 2023-09-29 赛纳生物科技(北京)有限公司 一种2+2测序的信号校正方法

Family Cites Families (17)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
GB9620209D0 (en) * 1996-09-27 1996-11-13 Cemu Bioteknik Ab Method of sequencing DNA
GB9626815D0 (en) 1996-12-23 1997-02-12 Cemu Bioteknik Ab Method of sequencing DNA
GB9901475D0 (en) 1999-01-22 1999-03-17 Pyrosequencing Ab A method of DNA sequencing
US7244559B2 (en) * 1999-09-16 2007-07-17 454 Life Sciences Corporation Method of sequencing a nucleic acid
US7211390B2 (en) * 1999-09-16 2007-05-01 454 Life Sciences Corporation Method of sequencing a nucleic acid
US6274320B1 (en) * 1999-09-16 2001-08-14 Curagen Corporation Method of sequencing a nucleic acid
US6783934B1 (en) * 2000-05-01 2004-08-31 Cepheid, Inc. Methods for quantitative analysis of nucleic acid amplification reaction
GB0016472D0 (en) * 2000-07-05 2000-08-23 Amersham Pharm Biotech Uk Ltd Sequencing method and apparatus
WO2002019602A2 (en) * 2000-09-01 2002-03-07 Fred Hutchinson Cancer Research Center Statistical modeling to analyze large data arrays
US6952651B2 (en) * 2002-06-17 2005-10-04 Intel Corporation Methods and apparatus for nucleic acid sequencing by signal stretching and data integration
US20040197845A1 (en) * 2002-08-30 2004-10-07 Arjang Hassibi Methods and apparatus for pathogen detection, identification and/or quantification
WO2005003375A2 (en) * 2003-01-29 2005-01-13 454 Corporation Methods of amplifying and sequencing nucleic acids
US7575865B2 (en) * 2003-01-29 2009-08-18 454 Life Sciences Corporation Methods of amplifying and sequencing nucleic acids
GB0324456D0 (en) 2003-10-20 2003-11-19 Isis Innovation Parallel DNA sequencing methods
WO2005085273A1 (en) * 2004-03-04 2005-09-15 The University Of British Columbia Thrombomodulin (thbd) haplotypes predict outcome of patients
PT1801209E (pt) * 2004-08-24 2011-05-26 Toray Industries Arn gen?mico do v?rus humano modificado da hepatite c com capacidade de replica??o aut?noma
ES2626620T3 (es) 2006-02-16 2017-07-25 454 Life Sciences Corporation Sistema y método para corregir errores de extensión de cebadores en datos de secuencias de ácidos nucleicos

Similar Documents

Publication Publication Date Title
JP2013211043A5 (https=)
JP2016021240A5 (https=)
JP2017153484A5 (https=)
SG10201402714UA (en) Systems and methods for snp analysis and genome sequencing
JP2012110359A5 (https=)
JP2016510185A5 (https=)
JP2005534235A5 (https=)
JP2015084524A5 (https=)
JP2016526255A5 (https=)
JP2014525705A5 (https=)
JP2011151813A5 (https=)
JP2015504186A5 (https=)
JP2007531074A5 (https=)
GB2513082A (en) Implementing updates to source code executing on a plurality of compute nodes
JP2017064185A5 (https=)
RU2015138548A (ru) Система для обеспечения потока операций бизнес-процесса
JP2009123204A5 (https=)
JP2017516364A5 (https=)
Skurikhina Simulation of the process for implementation of the information management system
JP2013037391A5 (https=)
JP2010179588A5 (ja) 画像形成装置、ジョブ処理方法、及びプログラム
JP2012033112A5 (https=)
WO2011117890A3 (en) Method for streaming svd computation
JP2008193601A5 (https=)
JP2012256270A5 (https=)