CA2637617C - System and method for correcting primer extension errors in nucleic acid sequence data - Google Patents

System and method for correcting primer extension errors in nucleic acid sequence data Download PDF

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Publication number
CA2637617C
CA2637617C CA2637617A CA2637617A CA2637617C CA 2637617 C CA2637617 C CA 2637617C CA 2637617 A CA2637617 A CA 2637617A CA 2637617 A CA2637617 A CA 2637617A CA 2637617 C CA2637617 C CA 2637617C
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value
corrected
signal
flowgram
parameter
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Expired - Fee Related
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CA2637617A
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English (en)
French (fr)
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CA2637617A1 (en
Inventor
Yi-Ju Chen
Keith Mcdade
John Simpson
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454 Life Science Corp
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454 Life Science Corp
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6848—Nucleic acid amplification reactions characterised by the means for preventing contamination or increasing the specificity or sensitivity of an amplification reaction
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Physics & Mathematics (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biophysics (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Medical Informatics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Biochemistry (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Evolutionary Biology (AREA)
  • Theoretical Computer Science (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Software Systems (AREA)
  • Public Health (AREA)
  • Evolutionary Computation (AREA)
  • Epidemiology (AREA)
  • Databases & Information Systems (AREA)
  • Data Mining & Analysis (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Bioethics (AREA)
  • Artificial Intelligence (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)
CA2637617A 2006-02-16 2007-02-15 System and method for correcting primer extension errors in nucleic acid sequence data Expired - Fee Related CA2637617C (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US77435406P 2006-02-16 2006-02-16
US60/774,354 2006-02-16
PCT/US2007/004187 WO2007098049A2 (en) 2006-02-16 2007-02-15 System and method for correcting primer extension errors in nucleic acid sequence data

Publications (2)

Publication Number Publication Date
CA2637617A1 CA2637617A1 (en) 2007-08-30
CA2637617C true CA2637617C (en) 2018-09-18

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ID=38437895

Family Applications (1)

Application Number Title Priority Date Filing Date
CA2637617A Expired - Fee Related CA2637617C (en) 2006-02-16 2007-02-15 System and method for correcting primer extension errors in nucleic acid sequence data

Country Status (7)

Country Link
US (2) US8301394B2 (https=)
EP (2) EP2578702A1 (https=)
JP (2) JP5808515B2 (https=)
CN (1) CN101390101B (https=)
CA (1) CA2637617C (https=)
ES (1) ES2626620T3 (https=)
WO (1) WO2007098049A2 (https=)

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JP6282036B2 (ja) 2012-12-27 2018-02-21 クオンタムバイオシステムズ株式会社 物質の移動速度の制御方法および制御装置
US9146248B2 (en) 2013-03-14 2015-09-29 Intelligent Bio-Systems, Inc. Apparatus and methods for purging flow cells in nucleic acid sequencing instruments
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US9591268B2 (en) 2013-03-15 2017-03-07 Qiagen Waltham, Inc. Flow cell alignment methods and systems
US9926597B2 (en) 2013-07-26 2018-03-27 Life Technologies Corporation Control nucleic acid sequences for use in sequencing-by-synthesis and methods for designing the same
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US10410739B2 (en) 2013-10-04 2019-09-10 Life Technologies Corporation Methods and systems for modeling phasing effects in sequencing using termination chemistry
JP2015077652A (ja) 2013-10-16 2015-04-23 クオンタムバイオシステムズ株式会社 ナノギャップ電極およびその製造方法
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Also Published As

Publication number Publication date
EP2002367B1 (en) 2017-03-29
EP2002367A2 (en) 2008-12-17
EP2002367A4 (en) 2009-06-03
JP2013211043A (ja) 2013-10-10
US20100192032A1 (en) 2010-07-29
US20130054171A1 (en) 2013-02-28
JP2009527817A (ja) 2009-07-30
ES2626620T3 (es) 2017-07-25
WO2007098049A9 (en) 2007-10-25
EP2578702A1 (en) 2013-04-10
CN101390101B (zh) 2012-05-23
JP5746265B2 (ja) 2015-07-08
CA2637617A1 (en) 2007-08-30
WO2007098049A3 (en) 2008-08-07
CN101390101A (zh) 2009-03-18
WO2007098049A2 (en) 2007-08-30
JP5808515B2 (ja) 2015-11-10
US9587274B2 (en) 2017-03-07
US8301394B2 (en) 2012-10-30

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