JP2009539068A5 - - Google Patents

Download PDF

Info

Publication number
JP2009539068A5
JP2009539068A5 JP2009512334A JP2009512334A JP2009539068A5 JP 2009539068 A5 JP2009539068 A5 JP 2009539068A5 JP 2009512334 A JP2009512334 A JP 2009512334A JP 2009512334 A JP2009512334 A JP 2009512334A JP 2009539068 A5 JP2009539068 A5 JP 2009539068A5
Authority
JP
Japan
Prior art keywords
ions
probability measure
ion
candidate
fragment
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
JP2009512334A
Other languages
English (en)
Japanese (ja)
Other versions
JP5393449B2 (ja
JP2009539068A (ja
Filing date
Publication date
Priority claimed from US11/754,305 external-priority patent/US7781729B2/en
Application filed filed Critical
Publication of JP2009539068A publication Critical patent/JP2009539068A/ja
Publication of JP2009539068A5 publication Critical patent/JP2009539068A5/ja
Application granted granted Critical
Publication of JP5393449B2 publication Critical patent/JP5393449B2/ja
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

JP2009512334A 2006-05-26 2007-05-28 質量スペクトルデータの解析 Active JP5393449B2 (ja)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US80913506P 2006-05-26 2006-05-26
US60/809,135 2006-05-26
US11/754,305 US7781729B2 (en) 2006-05-26 2007-05-27 Analyzing mass spectral data
US11/754,305 2007-05-27
PCT/US2007/069832 WO2007140355A2 (en) 2006-05-26 2007-05-28 Analyzing mass spectral data

Publications (3)

Publication Number Publication Date
JP2009539068A JP2009539068A (ja) 2009-11-12
JP2009539068A5 true JP2009539068A5 (https=) 2010-07-15
JP5393449B2 JP5393449B2 (ja) 2014-01-22

Family

ID=38779399

Family Applications (1)

Application Number Title Priority Date Filing Date
JP2009512334A Active JP5393449B2 (ja) 2006-05-26 2007-05-28 質量スペクトルデータの解析

Country Status (5)

Country Link
US (1) US7781729B2 (https=)
EP (1) EP2032238A4 (https=)
JP (1) JP5393449B2 (https=)
CA (1) CA2653400A1 (https=)
WO (1) WO2007140355A2 (https=)

Families Citing this family (28)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7501621B2 (en) * 2006-07-12 2009-03-10 Leco Corporation Data acquisition system for a spectrometer using an adaptive threshold
WO2008059567A1 (en) * 2006-11-15 2008-05-22 Shimadzu Corporation Mass spectrometry method and mass spectrometry apparatus
US7977626B2 (en) * 2007-06-01 2011-07-12 Agilent Technologies, Inc. Time of flight mass spectrometry method and apparatus
US8803080B2 (en) * 2007-06-02 2014-08-12 Cerno Bioscience Llc Self calibration approach for mass spectrometry
US9128054B2 (en) 2008-05-09 2015-09-08 Nuctech Company Limited Detection method for an ion migration spectrum and an ion migration spectrometer using the same method
CN101576531A (zh) * 2008-05-09 2009-11-11 同方威视技术股份有限公司 离子迁移谱检测方法及使用该方法的离子迁移谱仪
WO2010129187A1 (en) * 2009-05-08 2010-11-11 Thermo Finnigan Llc Methods and systems for matching productions to precursor ions
US10497466B2 (en) * 2010-05-14 2019-12-03 Dh Technologies Development Pte. Ltd. Systems and methods for calculating protein confidence values
CZ302779B6 (cs) * 2010-05-17 2011-11-02 Univerzita Palackého v Olomouci Mössbaueruv spektrometr
US8805074B2 (en) * 2010-09-27 2014-08-12 Sharp Laboratories Of America, Inc. Methods and systems for automatic extraction and retrieval of auxiliary document content
EP2447980B1 (en) * 2010-11-02 2019-05-22 Thermo Fisher Scientific (Bremen) GmbH Method of generating a mass spectrum having improved resolving power
US20120108448A1 (en) * 2010-11-03 2012-05-03 Agilent Technologies, Inc. System and method for curating mass spectral libraries
US8935101B2 (en) 2010-12-16 2015-01-13 Thermo Finnigan Llc Method and apparatus for correlating precursor and product ions in all-ions fragmentation experiments
JP5664667B2 (ja) * 2011-01-11 2015-02-04 株式会社島津製作所 質量分析データ解析方法、質量分析データ解析装置、及び質量分析データ解析用プログラム
DE112012001185B4 (de) * 2011-03-11 2014-08-28 Leco Corporation Systeme und Verfahren zur Datenverarbeitung in Chromatographiesystemen
GB2495899B (en) * 2011-07-04 2018-05-16 Thermo Fisher Scient Bremen Gmbh Identification of samples using a multi pass or multi reflection time of flight mass spectrometer
US9329122B2 (en) * 2011-08-15 2016-05-03 Schlumberger Technology Corporation Diffuse reflectance infrared fourier transform spectroscopy for characterization of earth materials
US8723108B1 (en) 2012-10-19 2014-05-13 Agilent Technologies, Inc. Transient level data acquisition and peak correction for time-of-flight mass spectrometry
WO2014107573A1 (en) * 2013-01-04 2014-07-10 The Regents Of The University Of California Method for the determination of biomolecule turnover rates
CN107077592B (zh) * 2014-03-28 2021-02-19 威斯康星校友研究基金会 高分辨率气相色谱-质谱数据与单位分辨率参考数据库的改进谱图匹配的高质量精确度滤波
EP3268978A1 (en) * 2015-03-12 2018-01-17 Thermo Finnigan LLC Methods for data-dependent mass spectrometry of mixed biomolecular analytes
DE112017001151B4 (de) * 2016-03-04 2025-12-24 Leco Corporation Benutzerdefiniertes skaliertes Massendefektdiagramm mit Filterung und Kennzeichnung
US10615015B2 (en) 2017-02-23 2020-04-07 Thermo Fisher Scientific (Bremen) Gmbh Method for identification of the elemental composition of species of molecules
JP6994921B2 (ja) * 2017-12-05 2022-01-14 日本電子株式会社 質量分析データ処理装置および質量分析データ処理方法
CA3091796A1 (en) * 2018-02-19 2019-08-22 Cerno Bioscience Llc Reliable and automatic mass spectral analysis
WO2019232520A1 (en) * 2018-06-01 2019-12-05 Cerno Bioscience Llc Mass spectral analysis of large molecules
GB2585258B (en) 2019-01-30 2022-10-19 Bruker Daltonics Gmbh & Co Kg Mass spectrometric method for determining the presence or absence of a chemical element in an analyte
GB201907792D0 (en) * 2019-05-31 2019-07-17 Thermo Fisher Scient Bremen Gmbh Deconvolution of mass spectromerty data

Family Cites Families (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5130538A (en) * 1989-05-19 1992-07-14 John B. Fenn Method of producing multiply charged ions and for determining molecular weights of molecules by use of the multiply charged ions of molecules
US5300771A (en) * 1992-06-02 1994-04-05 Analytica Of Branford Method for determining the molecular weights of polyatomic molecules by mass analysis of their multiply charged ions
US5538897A (en) * 1994-03-14 1996-07-23 University Of Washington Use of mass spectrometry fragmentation patterns of peptides to identify amino acid sequences in databases
JP2006522340A (ja) 2003-04-02 2006-09-28 メルク　エンド　カムパニー　インコーポレーテッド 質量分析データの分析法
ATE554458T1 (de) * 2003-04-28 2012-05-15 Cerno Bioscience Llc Rechnerisches verfahren und system für die massenspektralanalyse
US6983213B2 (en) * 2003-10-20 2006-01-03 Cerno Bioscience Llc Methods for operating mass spectrometry (MS) instrument systems
US7199363B2 (en) * 2003-10-14 2007-04-03 Micromass Uk Limited Mass spectrometer
CA2585453C (en) * 2004-10-28 2020-02-18 Cerno Bioscience Llc Qualitative and quantitative mass spectral analysis
US7297940B2 (en) * 2005-05-03 2007-11-20 Palo Alto Research Center Incorporated Method, apparatus, and program product for classifying ionized molecular fragments
US7904253B2 (en) * 2006-07-29 2011-03-08 Cerno Bioscience Llc Determination of chemical composition and isotope distribution with mass spectrometry
US8803080B2 (en) * 2007-06-02 2014-08-12 Cerno Bioscience Llc Self calibration approach for mass spectrometry

Similar Documents

Publication Publication Date Title
JP2009539068A5 (https=)
Ramus et al. Benchmarking quantitative label-free LC–MS data processing workflows using a complex spiked proteomic standard dataset
Li et al. Comparing the normalization methods for the differential analysis of Illumina high-throughput RNA-Seq data
White III et al. The state of rhizospheric science in the era of multi-omics: A practical guide to omics technologies
Elias et al. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
Deutsch et al. Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics
Fermin et al. Abacus: a computational tool for extracting and pre‐processing spectral count data for label‐free quantitative proteomic analysis
Carrillo et al. Methods for combining peptide intensities to estimate relative protein abundance
CN110178182B (zh) 用于对复杂样本进行质量分析的方法、装置和存储介质
Li et al. On the accuracy and limits of peptide fragmentation spectrum prediction
JP2011528443A5 (https=)
Boekweg et al. Challenges and opportunities for single-cell computational proteomics
Gorska et al. Evaluation of cerebrospinal fluid (CSF) and interstitial fluid (ISF) mouse proteomes for the validation and description of Alzheimer’s disease biomarkers
Orenstein et al. Assessment of algorithms for inferring positional weight matrix motifs of transcription factor binding sites using protein binding microarray data
Callesen et al. Reproducibility of mass spectrometry based protein profiles for diagnosis of ovarian cancer across clinical studies: A systematic review
Chen et al. A mixed-effects model for incomplete data from labeling-based quantitative proteomics experiments
CN114282446A (zh) 一种基于不同偏好光谱模型的拟合预测方法
JP2004279424A5 (https=)
KR20150010101A (ko) 분자 오비탈 분포에 대한 정량적 비교 분석 방법 및 이를 이용한 시스템
Walach et al. Cellwise outlier detection and biomarker identification in metabolomics based on pairwise log ratios
Matthiesen Algorithms for database-dependent search of MS/MS data
Higdon et al. LIP index for peptide classification using MS/MS and SEQUEST search via logistic regression
JP6099820B2 (ja) 排他的分子軌道分布を有する分子軌道ライブラリおよびこれを用いた分子軌道分布領域評価方法およびこれを用いたシステム
US9720001B2 (en) Methods for mass spectrometric biopolymer analysis using optimized weighted oligomer scheduling
Wongravee et al. Monte-Carlo methods for determining optimal number of significant variables. Application to mouse urinary profiles