IL291709B1 - A method for determining a measure related to the probability that two shifted sequence reads originate from the same sequence that includes mutations - Google Patents
A method for determining a measure related to the probability that two shifted sequence reads originate from the same sequence that includes mutationsInfo
- Publication number
- IL291709B1 IL291709B1 IL291709A IL29170922A IL291709B1 IL 291709 B1 IL291709 B1 IL 291709B1 IL 291709 A IL291709 A IL 291709A IL 29170922 A IL29170922 A IL 29170922A IL 291709 B1 IL291709 B1 IL 291709B1
- Authority
- IL
- Israel
- Prior art keywords
- mutations
- probability
- determining
- reads derive
- measure correlated
- Prior art date
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/20—Sequence assembly
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Physics & Mathematics (AREA)
- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biophysics (AREA)
- Biotechnology (AREA)
- General Health & Medical Sciences (AREA)
- Medical Informatics (AREA)
- Analytical Chemistry (AREA)
- Bioinformatics & Computational Biology (AREA)
- Evolutionary Biology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Theoretical Computer Science (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Molecular Biology (AREA)
- Immunology (AREA)
- Genetics & Genomics (AREA)
- General Engineering & Computer Science (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Software Systems (AREA)
- Databases & Information Systems (AREA)
- Data Mining & Analysis (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Bioethics (AREA)
- Artificial Intelligence (AREA)
- Public Health (AREA)
- Evolutionary Computation (AREA)
- Epidemiology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Management, Administration, Business Operations System, And Electronic Commerce (AREA)
- Complex Calculations (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| GB201914064A GB201914064D0 (en) | 2019-09-30 | 2019-09-30 | Method for determining a measure correlated to the probability that two mutated sequence reads derive from the same sequence comprising mutations |
| PCT/GB2020/052358 WO2021064365A1 (en) | 2019-09-30 | 2020-09-29 | Method for determining a measure correlated to the probability that two mutated sequence reads derive from the same sequence comprising mutations |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| IL291709A IL291709A (en) | 2022-05-01 |
| IL291709B1 true IL291709B1 (en) | 2026-03-01 |
Family
ID=68538862
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| IL291709A IL291709B1 (en) | 2019-09-30 | 2022-03-27 | A method for determining a measure related to the probability that two shifted sequence reads originate from the same sequence that includes mutations |
Country Status (13)
| Country | Link |
|---|---|
| US (1) | US20230044570A1 (https=) |
| EP (1) | EP4042430A1 (https=) |
| JP (1) | JP7636400B2 (https=) |
| KR (1) | KR102903933B1 (https=) |
| CN (1) | CN114424288A (https=) |
| AU (1) | AU2020358797A1 (https=) |
| BR (1) | BR112022005730A2 (https=) |
| CA (1) | CA3155101A1 (https=) |
| GB (1) | GB201914064D0 (https=) |
| IL (1) | IL291709B1 (https=) |
| MX (1) | MX2022003605A (https=) |
| NZ (1) | NZ786015A (https=) |
| WO (1) | WO2021064365A1 (https=) |
Families Citing this family (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN115662523B (zh) * | 2022-10-21 | 2023-06-20 | 哈尔滨工业大学 | 面向群体基因组索引表示与构建的方法及设备 |
| JP2026509693A (ja) | 2023-03-10 | 2026-03-25 | イルミナ インコーポレイテッド | ポリヌクレオチド配列をアセンブルするためのｋ－ｍｅｒベースの方法 |
| WO2025254714A1 (en) | 2024-06-03 | 2025-12-11 | Illumina, Inc. | System and method for assembling a polynucleotide sequence |
| WO2025255494A1 (en) | 2024-06-07 | 2025-12-11 | Illumina, Inc. | Identifying the origin of amplified rna molecules |
| WO2026072259A1 (en) | 2024-09-30 | 2026-04-02 | Illumina, Inc. | Methods, systems, and kits for sequencing nucleic acids with deamination and mutagenesis |
Family Cites Families (6)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2002079502A1 (en) * | 2001-03-28 | 2002-10-10 | The University Of Queensland | A method for nucleic acid sequence analysis |
| WO2013040583A2 (en) * | 2011-09-16 | 2013-03-21 | Complete Genomics, Inc | Determining variants in a genome of a heterogeneous sample |
| WO2016130578A1 (en) * | 2015-02-09 | 2016-08-18 | 10X Genomics, Inc. | Systems and methods for determining structural variation and phasing using variant call data |
| CA2977548A1 (en) * | 2015-04-24 | 2016-10-27 | University Of Utah Research Foundation | Methods and systems for multiple taxonomic classification |
| WO2019022018A1 (ja) * | 2017-07-24 | 2019-01-31 | 国立研究開発法人農業・食品産業技術総合研究機構 | 多型検出法 |
| JP2021503922A (ja) * | 2017-11-28 | 2021-02-15 | グレイル， インコーポレイテッドＧｒａｉｌ， Ｉｎｃ． | ターゲットシーケンシングのためのモデル |
-
2019
- 2019-09-30 GB GB201914064A patent/GB201914064D0/en not_active Ceased
-
2020
- 2020-09-29 CN CN202080065982.6A patent/CN114424288A/zh active Pending
- 2020-09-29 EP EP20789214.2A patent/EP4042430A1/en active Pending
- 2020-09-29 JP JP2022517384A patent/JP7636400B2/ja active Active
- 2020-09-29 MX MX2022003605A patent/MX2022003605A/es unknown
- 2020-09-29 KR KR1020227010852A patent/KR102903933B1/ko active Active
- 2020-09-29 AU AU2020358797A patent/AU2020358797A1/en active Pending
- 2020-09-29 CA CA3155101A patent/CA3155101A1/en active Pending
- 2020-09-29 NZ NZ786015A patent/NZ786015A/en unknown
- 2020-09-29 WO PCT/GB2020/052358 patent/WO2021064365A1/en not_active Ceased
- 2020-09-29 US US17/754,303 patent/US20230044570A1/en active Pending
- 2020-09-29 BR BR112022005730A patent/BR112022005730A2/pt not_active IP Right Cessation
-
2022
- 2022-03-27 IL IL291709A patent/IL291709B1/en unknown
Also Published As
| Publication number | Publication date |
|---|---|
| JP2022550013A (ja) | 2022-11-30 |
| CN114424288A (zh) | 2022-04-29 |
| AU2020358797A1 (en) | 2022-04-14 |
| BR112022005730A2 (pt) | 2022-06-21 |
| JP7636400B2 (ja) | 2025-02-26 |
| CA3155101A1 (en) | 2021-04-08 |
| US20230044570A1 (en) | 2023-02-09 |
| IL291709A (en) | 2022-05-01 |
| WO2021064365A1 (en) | 2021-04-08 |
| MX2022003605A (es) | 2022-05-30 |
| EP4042430A1 (en) | 2022-08-17 |
| KR102903933B1 (ko) | 2025-12-23 |
| KR20220070452A (ko) | 2022-05-31 |
| GB201914064D0 (en) | 2019-11-13 |
| NZ786015A (en) | 2024-11-29 |
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