GB201914064D0 - Method for determining a measure correlated to the probability that two mutated sequence reads derive from the same sequence comprising mutations - Google Patents

Method for determining a measure correlated to the probability that two mutated sequence reads derive from the same sequence comprising mutations

Info

Publication number
GB201914064D0
GB201914064D0 GB201914064A GB201914064A GB201914064D0 GB 201914064 D0 GB201914064 D0 GB 201914064D0 GB 201914064 A GB201914064 A GB 201914064A GB 201914064 A GB201914064 A GB 201914064A GB 201914064 D0 GB201914064 D0 GB 201914064D0
Authority
GB
United Kingdom
Prior art keywords
mutations
probability
determining
reads derive
measure correlated
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
GB201914064A
Other languages
English (en)
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Longas Technologies Pty Ltd
Original Assignee
Longas Technologies Pty Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Longas Technologies Pty Ltd filed Critical Longas Technologies Pty Ltd
Priority to GB201914064A priority Critical patent/GB201914064D0/en
Publication of GB201914064D0 publication Critical patent/GB201914064D0/en
Priority to MX2022003605A priority patent/MX2022003605A/es
Priority to AU2020358797A priority patent/AU2020358797A1/en
Priority to KR1020227010852A priority patent/KR102903933B1/ko
Priority to CA3155101A priority patent/CA3155101A1/en
Priority to US17/754,303 priority patent/US20230044570A1/en
Priority to BR112022005730A priority patent/BR112022005730A2/pt
Priority to PCT/GB2020/052358 priority patent/WO2021064365A1/en
Priority to JP2022517384A priority patent/JP7636400B2/ja
Priority to NZ786015A priority patent/NZ786015A/en
Priority to CN202080065982.6A priority patent/CN114424288A/zh
Priority to EP20789214.2A priority patent/EP4042430A1/en
Priority to IL291709A priority patent/IL291709B1/en
Ceased legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20—Sequence assembly
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biophysics (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Analytical Chemistry (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Genetics & Genomics (AREA)
  • General Engineering & Computer Science (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • Software Systems (AREA)
  • Databases & Information Systems (AREA)
  • Data Mining & Analysis (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Bioethics (AREA)
  • Artificial Intelligence (AREA)
  • Public Health (AREA)
  • Evolutionary Computation (AREA)
  • Epidemiology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
  • Complex Calculations (AREA)
GB201914064A 2019-09-30 2019-09-30 Method for determining a measure correlated to the probability that two mutated sequence reads derive from the same sequence comprising mutations Ceased GB201914064D0 (en)

Priority Applications (13)

Application Number Priority Date Filing Date Title
GB201914064A GB201914064D0 (en) 2019-09-30 2019-09-30 Method for determining a measure correlated to the probability that two mutated sequence reads derive from the same sequence comprising mutations
EP20789214.2A EP4042430A1 (en) 2019-09-30 2020-09-29 Method for determining a measure correlated to the probability that two mutated sequence reads derive from the same sequence comprising mutations
BR112022005730A BR112022005730A2 (pt) 2019-09-30 2020-09-29 Método para determinar uma medida correlacionada à probabilidade de que duas leituras de sequência com mutação derivem da mesma sequência que compreende mutações
AU2020358797A AU2020358797A1 (en) 2019-09-30 2020-09-29 Method for determining a measure correlated to the probability that two mutated sequence reads derive from the same sequence comprising mutations
KR1020227010852A KR102903933B1 (ko) 2019-09-30 2020-09-29 돌연변이들을 포함하는 동일한 서열로부터 2개의 돌연변이된 서열 판독물이 유래할 확률과 상관된 측정치를 결정하기 위한 방법
CA3155101A CA3155101A1 (en) 2019-09-30 2020-09-29 Method for determining a measure correlated to the probability that two mutated sequence reads derive from the same sequence comprising mutations
US17/754,303 US20230044570A1 (en) 2019-09-30 2020-09-29 Method for determining a measure correlated to the probability that two mutated sequence reads derive from the same sequence comprising mutations
MX2022003605A MX2022003605A (es) 2019-09-30 2020-09-29 Metodo para determinar una medida correlacionada con la probabilidad de que dos lecturas de la secuencia mutada derivan de la misma secuencia que comprende mutaciones.
PCT/GB2020/052358 WO2021064365A1 (en) 2019-09-30 2020-09-29 Method for determining a measure correlated to the probability that two mutated sequence reads derive from the same sequence comprising mutations
JP2022517384A JP7636400B2 (ja) 2019-09-30 2020-09-29 ２つの変異シーケンスリードが、同一の変異を含むシーケンスに由来する確率と相関する尺度を決定するための方法
NZ786015A NZ786015A (en) 2019-09-30 2020-09-29 Method for determining a measure correlated to the probability that two mutated sequence reads derive from the same sequence comprising mutations
CN202080065982.6A CN114424288A (zh) 2019-09-30 2020-09-29 用于确定与两个突变的序列读段衍生自包含突变的相同序列的概率相关的量度的方法
IL291709A IL291709B1 (en) 2019-09-30 2022-03-27 A method for determining a measure related to the probability that two shifted sequence reads originate from the same sequence that includes mutations

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
GB201914064A GB201914064D0 (en) 2019-09-30 2019-09-30 Method for determining a measure correlated to the probability that two mutated sequence reads derive from the same sequence comprising mutations

Publications (1)

Publication Number Publication Date
GB201914064D0 true GB201914064D0 (en) 2019-11-13

Family

ID=68538862

Family Applications (1)

Application Number Title Priority Date Filing Date
GB201914064A Ceased GB201914064D0 (en) 2019-09-30 2019-09-30 Method for determining a measure correlated to the probability that two mutated sequence reads derive from the same sequence comprising mutations

Country Status (13)

Country Link
US (1) US20230044570A1 (https=)
EP (1) EP4042430A1 (https=)
JP (1) JP7636400B2 (https=)
KR (1) KR102903933B1 (https=)
CN (1) CN114424288A (https=)
AU (1) AU2020358797A1 (https=)
BR (1) BR112022005730A2 (https=)
CA (1) CA3155101A1 (https=)
GB (1) GB201914064D0 (https=)
IL (1) IL291709B1 (https=)
MX (1) MX2022003605A (https=)
NZ (1) NZ786015A (https=)
WO (1) WO2021064365A1 (https=)

Families Citing this family (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN115662523B (zh) * 2022-10-21 2023-06-20 哈尔滨工业大学 面向群体基因组索引表示与构建的方法及设备
JP2026509693A (ja) 2023-03-10 2026-03-25 イルミナ インコーポレイテッド ポリヌクレオチド配列をアセンブルするためのｋ－ｍｅｒベースの方法
WO2025254714A1 (en) 2024-06-03 2025-12-11 Illumina, Inc. System and method for assembling a polynucleotide sequence
WO2025255494A1 (en) 2024-06-07 2025-12-11 Illumina, Inc. Identifying the origin of amplified rna molecules
WO2026072259A1 (en) 2024-09-30 2026-04-02 Illumina, Inc. Methods, systems, and kits for sequencing nucleic acids with deamination and mutagenesis

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2002079502A1 (en) * 2001-03-28 2002-10-10 The University Of Queensland A method for nucleic acid sequence analysis
WO2013040583A2 (en) * 2011-09-16 2013-03-21 Complete Genomics, Inc Determining variants in a genome of a heterogeneous sample
WO2016130578A1 (en) * 2015-02-09 2016-08-18 10X Genomics, Inc. Systems and methods for determining structural variation and phasing using variant call data
CA2977548A1 (en) * 2015-04-24 2016-10-27 University Of Utah Research Foundation Methods and systems for multiple taxonomic classification
WO2019022018A1 (ja) * 2017-07-24 2019-01-31 国立研究開発法人農業・食品産業技術総合研究機構 多型検出法
JP2021503922A (ja) * 2017-11-28 2021-02-15 グレイル， インコーポレイテッドＧｒａｉｌ， Ｉｎｃ． ターゲットシーケンシングのためのモデル

Also Published As

Publication number Publication date
JP2022550013A (ja) 2022-11-30
CN114424288A (zh) 2022-04-29
AU2020358797A1 (en) 2022-04-14
BR112022005730A2 (pt) 2022-06-21
JP7636400B2 (ja) 2025-02-26
CA3155101A1 (en) 2021-04-08
US20230044570A1 (en) 2023-02-09
IL291709A (en) 2022-05-01
WO2021064365A1 (en) 2021-04-08
IL291709B1 (en) 2026-03-01
MX2022003605A (es) 2022-05-30
EP4042430A1 (en) 2022-08-17
KR102903933B1 (ko) 2025-12-23
KR20220070452A (ko) 2022-05-31
NZ786015A (en) 2024-11-29

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