HK1176095A1 - Efficient base determination in sequencing reactions - Google Patents

Efficient base determination in sequencing reactions

Info

Publication number
HK1176095A1
HK1176095A1 HK13103449.6A HK13103449A HK1176095A1 HK 1176095 A1 HK1176095 A1 HK 1176095A1 HK 13103449 A HK13103449 A HK 13103449A HK 1176095 A1 HK1176095 A1 HK 1176095A1
Authority
HK
Hong Kong
Prior art keywords
sequencing reactions
base determination
efficient base
efficient
determination
Prior art date
Application number
HK13103449.6A
Other languages
English (en)
Chinese (zh)
Inventor
拉多杰．德瑪納克
馬修．卡洛
安德魯．斯帕克斯
弗雷德里克．達爾
克里福德.雷德
Original Assignee
考利達基因組股份有限公司
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US12/265,593 external-priority patent/US7901890B2/en
Priority claimed from US12/266,385 external-priority patent/US7897344B2/en
Application filed by 考利達基因組股份有限公司 filed Critical 考利達基因組股份有限公司
Publication of HK1176095A1 publication Critical patent/HK1176095A1/xx

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Physics & Mathematics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
HK13103449.6A 2007-12-05 2013-03-18 Efficient base determination in sequencing reactions HK1176095A1 (en)

Applications Claiming Priority (8)

Application Number Priority Date Filing Date Title
US99248507P 2007-12-05 2007-12-05
US2633708P 2008-02-05 2008-02-05
US3591408P 2008-03-12 2008-03-12
US6113408P 2008-06-13 2008-06-13
US10258608P 2008-10-03 2008-10-03
US12/265,593 US7901890B2 (en) 2007-11-05 2008-11-05 Methods and oligonucleotide designs for insertion of multiple adaptors employing selective methylation
US12/266,385 US7897344B2 (en) 2007-11-06 2008-11-06 Methods and oligonucleotide designs for insertion of multiple adaptors into library constructs
US11619308P 2008-11-19 2008-11-19

Publications (1)

Publication Number Publication Date
HK1176095A1 true HK1176095A1 (en) 2013-07-19

Family

ID=42270394

Family Applications (2)

Application Number Title Priority Date Filing Date
HK13103449.6A HK1176095A1 (en) 2007-12-05 2013-03-18 Efficient base determination in sequencing reactions
HK14100024.4A HK1187078A1 (en) 2007-12-05 2014-01-02 Efficient base determination in sequencing reactions

Family Applications After (1)

Application Number Title Priority Date Filing Date
HK14100024.4A HK1187078A1 (en) 2007-12-05 2014-01-02 Efficient base determination in sequencing reactions

Country Status (8)

Country Link
EP (1) EP2227563B1 (ja)
JP (1) JP5362738B2 (ja)
CN (1) CN101932729B (ja)
AU (1) AU2008335362B2 (ja)
CA (1) CA2707901C (ja)
HK (2) HK1176095A1 (ja)
SG (1) SG193776A1 (ja)
WO (1) WO2009076238A2 (ja)

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AU2010242073C1 (en) 2009-04-30 2015-12-24 Good Start Genetics, Inc. Methods and compositions for evaluating genetic markers
WO2011050340A1 (en) 2009-10-23 2011-04-28 Life Technologies Corporation Systems and methods for error correction in dna sequencing
US9163281B2 (en) * 2010-12-23 2015-10-20 Good Start Genetics, Inc. Methods for maintaining the integrity and identification of a nucleic acid template in a multiplex sequencing reaction
AU2012304328B2 (en) 2011-09-09 2017-07-20 The Board Of Trustees Of The Leland Stanford Junior University Methods for obtaining a sequence
US9708649B2 (en) 2011-10-31 2017-07-18 Hitachi High-Technologies Corporation Method and substrate for nucleic acid amplification, and method and apparatus for nucleic acid analysis
US8209130B1 (en) 2012-04-04 2012-06-26 Good Start Genetics, Inc. Sequence assembly
JP6410726B2 (ja) 2012-12-10 2018-10-24 レゾリューション バイオサイエンス， インコーポレイテッド 標的化ゲノム解析のための方法
JP2015035212A (ja) * 2013-07-29 2015-02-19 アジレント・テクノロジーズ・インクＡｇｉｌｅｎｔ Ｔｅｃｈｎｏｌｏｇｉｅｓ， Ｉｎｃ． ターゲットシークエンシングパネルから変異を見つける方法
EP3094741A1 (en) * 2014-01-14 2016-11-23 Qiagen GmbH Generation of tagged dna fragments
US11408024B2 (en) 2014-09-10 2022-08-09 Molecular Loop Biosciences, Inc. Methods for selectively suppressing non-target sequences
WO2016037358A1 (zh) * 2014-09-12 2016-03-17 深圳华大基因科技有限公司 分离的寡核苷酸及其在核酸测序中的用途
CN106715713B (zh) * 2014-09-12 2020-11-03 深圳华大智造科技有限公司 试剂盒及其在核酸测序中的用途
WO2016058134A1 (zh) * 2014-10-14 2016-04-21 深圳华大基因科技有限公司 一种接头元件和使用其构建测序文库的方法
JP6430631B2 (ja) * 2014-10-14 2018-11-28 深▲せん▼華大智造科技有限公司 リンカー要素、及び、それを使用してシーケンシングライブラリーを構築する方法
CN107077533B (zh) * 2014-12-10 2021-07-27 深圳华大生命科学研究院 测序数据处理装置和方法
WO2016090585A1 (zh) * 2014-12-10 2016-06-16 深圳华大基因研究院 测序数据处理装置和方法
CN107075564A (zh) * 2014-12-10 2017-08-18 深圳华大基因研究院 确定肿瘤核酸浓度的方法和装置
WO2016112073A1 (en) 2015-01-06 2016-07-14 Good Start Genetics, Inc. Screening for structural variants
WO2016124069A1 (zh) 2015-02-04 2016-08-11 深圳华大基因研究院 一种构建长片段测序文库的方法
US10227647B2 (en) 2015-02-17 2019-03-12 Complete Genomics, Inc. DNA sequencing using controlled strand displacement
RU2018121254A (ru) * 2015-11-11 2019-12-16 Резолюшн Байосайенс, Инк. Высокоэффективное построение библиотек днк
SG11201805600VA (en) 2016-01-15 2018-07-30 Ventana Med Syst Inc Deep sequencing profiling of tumors
SG11201809913PA (en) * 2016-05-16 2018-12-28 Nanostring Technologies Inc Methods for detecting target nucleic acids in a sample
KR102505122B1 (ko) 2016-08-25 2023-03-08 레졸루션 바이오사이언스, 인크. Dna 샘플 중 게놈 카피 변화의 검출을 위한 방법
SG10202100951SA (en) 2016-11-21 2021-03-30 Nanostring Technologies Inc Chemical compositions and methods of using same
CA3099909A1 (en) 2018-05-14 2019-11-21 Nanostring Technologies, Inc. Chemical compositions and methods of using same
CN114649055B (zh) * 2022-04-15 2022-10-21 北京贝瑞和康生物技术有限公司 用于检测单核苷酸变异和插入缺失的方法、设备和介质

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1907571B1 (en) * 2005-06-15 2017-04-26 Complete Genomics Inc. Nucleic acid analysis by random mixtures of non-overlapping fragments
WO2007044245A2 (en) * 2005-10-07 2007-04-19 Callida Genomics, Inc. Self-assembled single molecule arrays and uses thereof
EP2495337A1 (en) * 2006-02-24 2012-09-05 Callida Genomics, Inc. High throughput genome sequencing on DNA arrays
CA2649725A1 (en) * 2006-04-19 2007-10-25 Applera Corporation Reagents, methods, and libraries for gel-free bead-based sequencing

Also Published As

Publication number Publication date
WO2009076238A3 (en) 2009-07-30
JP2011520420A (ja) 2011-07-21
EP2227563A2 (en) 2010-09-15
WO2009076238A2 (en) 2009-06-18
HK1187078A1 (en) 2014-03-28
AU2008335362A1 (en) 2009-06-18
AU2008335362B2 (en) 2013-07-25
CA2707901C (en) 2015-09-15
CN101932729A (zh) 2010-12-29
CA2707901A1 (en) 2009-06-18
SG193776A1 (en) 2013-10-30
EP2227563B1 (en) 2012-06-06
JP5362738B2 (ja) 2013-12-11
CN101932729B (zh) 2013-03-27

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