GEP20125384B - Representations of nucleotide sequences - Google Patents
Representations of nucleotide sequencesInfo
- Publication number
- GEP20125384B GEP20125384B GEAP20049126A GEAP2004009126A GEP20125384B GE P20125384 B GEP20125384 B GE P20125384B GE AP20049126 A GEAP20049126 A GE AP20049126A GE AP2004009126 A GEAP2004009126 A GE AP2004009126A GE P20125384 B GEP20125384 B GE P20125384B
- Authority
- GE
- Georgia
- Prior art keywords
- genome
- representations
- nucleotide sequences
- exact
- silico
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
- C07H21/04—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with deoxyribosyl as saccharide radical
Landscapes
- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Biochemistry (AREA)
- Molecular Biology (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Biotechnology (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US47284503P | 2003-05-23 | 2003-05-23 | |
| US47284303P | 2003-05-23 | 2003-05-23 |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| GEP20125384B true GEP20125384B (en) | 2012-01-25 |
Family
ID=34437245
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| GEAP20049126A GEP20125384B (en) | 2003-05-23 | 2004-05-21 | Representations of nucleotide sequences |
Country Status (13)
| Country | Link |
|---|---|
| US (1) | US8694263B2 (https=) |
| EP (1) | EP1631690A2 (https=) |
| JP (1) | JP2006525814A (https=) |
| KR (1) | KR20060103813A (https=) |
| AU (1) | AU2004280531B2 (https=) |
| BR (1) | BRPI0410636A (https=) |
| CA (1) | CA2526810A1 (https=) |
| GE (1) | GEP20125384B (https=) |
| IL (1) | IL172093A0 (https=) |
| NO (1) | NO20056160L (https=) |
| NZ (1) | NZ544235A (https=) |
| RU (1) | RU2390561C2 (https=) |
| WO (1) | WO2005035792A2 (https=) |
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| EP1693468A1 (en) * | 2005-02-16 | 2006-08-23 | Epigenomics AG | Method for determining the methylation pattern of a polynucleic acid |
| US7932027B2 (en) * | 2005-02-16 | 2011-04-26 | Epigenomics Ag | Method for determining the methylation pattern of a polynucleic acid |
| AU2006326385B2 (en) * | 2005-12-14 | 2012-10-04 | James B. Hicks | Use of ROMA for characterizing genomic rearrangements |
| WO2008016374A2 (en) | 2005-12-14 | 2008-02-07 | Cold Spring Harbor Laboratory | Methods for assessing probabilistic measures of clinical outcome using genomic profiling |
| US10522240B2 (en) | 2006-05-03 | 2019-12-31 | Population Bio, Inc. | Evaluating genetic disorders |
| US7702468B2 (en) * | 2006-05-03 | 2010-04-20 | Population Diagnostics, Inc. | Evaluating genetic disorders |
| US20110224103A1 (en) * | 2008-05-27 | 2011-09-15 | Koninklijke Philips Electronics N.V. | Method for design of an oliginucleotide array |
| US12129514B2 (en) | 2009-04-30 | 2024-10-29 | Molecular Loop Biosolutions, Llc | Methods and compositions for evaluating genetic markers |
| EP2425240A4 (en) | 2009-04-30 | 2012-12-12 | Good Start Genetics Inc | METHOD AND COMPOSITION FOR EVALUATING GENETIC MARKERS |
| US9677139B2 (en) | 2009-12-11 | 2017-06-13 | Cold Spring Harbor Laboratory | Genetic markers indicative of a cancer patient response to trastuzumab (herceptin) |
| US8993532B2 (en) | 2010-04-23 | 2015-03-31 | Cold Spring Harbor Laboratory | Structurally designed shRNAs |
| US8423590B2 (en) * | 2010-05-30 | 2013-04-16 | International Business Machines Corporation | File generation for testing single-instance storage algorithm |
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| WO2012033961A2 (en) * | 2010-09-09 | 2012-03-15 | Abbott Laboratories | Systems and methods for displaying molecular probes and chromosomes |
| CA3210003A1 (en) | 2010-10-22 | 2012-04-26 | Cold Spring Harbor Laboratory | Varietal counting of nucleic acids for obtaining genomic copy number information |
| US20120102054A1 (en) * | 2010-10-25 | 2012-04-26 | Life Technologies Corporation | Systems and Methods for Annotating Biomolecule Data |
| US9163281B2 (en) | 2010-12-23 | 2015-10-20 | Good Start Genetics, Inc. | Methods for maintaining the integrity and identification of a nucleic acid template in a multiplex sequencing reaction |
| RU2486251C2 (ru) * | 2011-08-25 | 2013-06-27 | Учреждение Российской академии наук Институт биохимии им. А.Н. Баха РАН (ИНБИ РАН) | Способ идентификации и дифференциации прокариотических организмов |
| EP2766483B1 (en) | 2011-10-10 | 2022-03-23 | The Hospital For Sick Children | Methods and compositions for screening and treating developmental disorders |
| EP2766838A2 (en) | 2011-10-11 | 2014-08-20 | Life Technologies Corporation | Systems and methods for analysis and interpretation of nucleic acid sequence data |
| CA2852665A1 (en) | 2011-10-17 | 2013-04-25 | Good Start Genetics, Inc. | Analysis methods |
| US9773091B2 (en) | 2011-10-31 | 2017-09-26 | The Scripps Research Institute | Systems and methods for genomic annotation and distributed variant interpretation |
| EP2773779B1 (en) | 2011-11-04 | 2020-10-14 | Population Bio, Inc. | Methods and compositions for diagnosing, prognosing, and treating neurological conditions |
| US10407724B2 (en) | 2012-02-09 | 2019-09-10 | The Hospital For Sick Children | Methods and compositions for screening and treating developmental disorders |
| US8209130B1 (en) | 2012-04-04 | 2012-06-26 | Good Start Genetics, Inc. | Sequence assembly |
| US8812422B2 (en) | 2012-04-09 | 2014-08-19 | Good Start Genetics, Inc. | Variant database |
| US10227635B2 (en) | 2012-04-16 | 2019-03-12 | Molecular Loop Biosolutions, Llc | Capture reactions |
| DK2895621T3 (da) | 2012-09-14 | 2020-11-30 | Population Bio Inc | Fremgangsmåder og sammensætning til diagnosticering, prognose og behandling af neurologiske tilstande |
| WO2014052855A1 (en) | 2012-09-27 | 2014-04-03 | Population Diagnostics, Inc. | Methods and compositions for screening and treating developmental disorders |
| EP2971159B1 (en) | 2013-03-14 | 2019-05-08 | Molecular Loop Biosolutions, LLC | Methods for analyzing nucleic acids |
| US11342048B2 (en) | 2013-03-15 | 2022-05-24 | The Scripps Research Institute | Systems and methods for genomic annotation and distributed variant interpretation |
| US10235496B2 (en) | 2013-03-15 | 2019-03-19 | The Scripps Research Institute | Systems and methods for genomic annotation and distributed variant interpretation |
| US9418203B2 (en) | 2013-03-15 | 2016-08-16 | Cypher Genomics, Inc. | Systems and methods for genomic variant annotation |
| WO2014197377A2 (en) | 2013-06-03 | 2014-12-11 | Good Start Genetics, Inc. | Methods and systems for storing sequence read data |
| EP3058096A1 (en) | 2013-10-18 | 2016-08-24 | Good Start Genetics, Inc. | Methods for assessing a genomic region of a subject |
| US10851414B2 (en) | 2013-10-18 | 2020-12-01 | Good Start Genetics, Inc. | Methods for determining carrier status |
| US11053548B2 (en) | 2014-05-12 | 2021-07-06 | Good Start Genetics, Inc. | Methods for detecting aneuploidy |
| WO2016025818A1 (en) | 2014-08-15 | 2016-02-18 | Good Start Genetics, Inc. | Systems and methods for genetic analysis |
| GB2558326B (en) | 2014-09-05 | 2021-01-20 | Population Bio Inc | Methods and compositions for inhibiting and treating neurological conditions |
| WO2016040446A1 (en) | 2014-09-10 | 2016-03-17 | Good Start Genetics, Inc. | Methods for selectively suppressing non-target sequences |
| JP2017536087A (ja) | 2014-09-24 | 2017-12-07 | グッド スタート ジェネティクス, インコーポレイテッド | 遺伝子アッセイのロバストネスを増大させるためのプロセス制御 |
| CA3002133A1 (en) | 2014-10-17 | 2016-04-21 | Good Start Genetics, Inc. | Pre-implantation genetic screening and aneuploidy detection |
| WO2016112073A1 (en) | 2015-01-06 | 2016-07-14 | Good Start Genetics, Inc. | Screening for structural variants |
| WO2016149261A1 (en) | 2015-03-16 | 2016-09-22 | Personal Genome Diagnostics, Inc. | Systems and methods for analyzing nucleic acid |
| EP3377654B1 (en) * | 2015-11-16 | 2024-01-31 | Revere Biosensors, LLC | Systems and methods for identifying and distinguishing genetic samples |
| CN106021986B (zh) * | 2016-05-24 | 2019-04-09 | 人和未来生物科技(长沙)有限公司 | 超低频突变分子一致性序列简并算法 |
| US10240205B2 (en) | 2017-02-03 | 2019-03-26 | Population Bio, Inc. | Methods for assessing risk of developing a viral disease using a genetic test |
| CN110869512A (zh) | 2017-05-09 | 2020-03-06 | 雷瑞生物传感器有限责任公司 | 鉴别并区分遗传样品的系统及方法 |
| EP3625714B1 (en) * | 2017-05-16 | 2021-03-17 | Life Technologies Corporation | Methods for compression of molecular tagged nucleic acid sequence data |
| CN109390039B (zh) * | 2017-08-11 | 2020-10-16 | 深圳华大基因股份有限公司 | 一种统计dna拷贝数信息的方法、装置及存储介质 |
| EP4177356B1 (en) | 2018-08-08 | 2024-05-08 | PML Screening, LLC | Methods for assessing risk of developing a viral disease using a genetic test |
| US12565676B2 (en) | 2019-03-01 | 2026-03-03 | Revere Biosensors, Llc | Systems and methods for separating decoded arrays |
| WO2025254714A1 (en) | 2024-06-03 | 2025-12-11 | Illumina, Inc. | System and method for assembling a polynucleotide sequence |
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| US7117095B2 (en) * | 2000-11-21 | 2006-10-03 | Affymetrix, Inc. | Methods for selecting nucleic acid probes |
| JP2006525814A (ja) | 2003-05-23 | 2006-11-16 | コールド スプリング ハーバー ラボラトリー | ヌクレオチド配列の実質的表示 |
| JP2005249455A (ja) * | 2004-03-02 | 2005-09-15 | Hitachi Ltd | 予測方法、そのプログラム及び予測システム |
| AU2006326385B2 (en) | 2005-12-14 | 2012-10-04 | James B. Hicks | Use of ROMA for characterizing genomic rearrangements |
| WO2008016374A2 (en) | 2005-12-14 | 2008-02-07 | Cold Spring Harbor Laboratory | Methods for assessing probabilistic measures of clinical outcome using genomic profiling |
-
2004
- 2004-05-21 JP JP2006514923A patent/JP2006525814A/ja active Pending
- 2004-05-21 AU AU2004280531A patent/AU2004280531B2/en not_active Ceased
- 2004-05-21 BR BRPI0410636-9A patent/BRPI0410636A/pt not_active IP Right Cessation
- 2004-05-21 NZ NZ544235A patent/NZ544235A/en not_active IP Right Cessation
- 2004-05-21 CA CA002526810A patent/CA2526810A1/en not_active Abandoned
- 2004-05-21 KR KR1020057022426A patent/KR20060103813A/ko not_active Abandoned
- 2004-05-21 RU RU2005140278/13A patent/RU2390561C2/ru not_active IP Right Cessation
- 2004-05-21 WO PCT/US2004/016060 patent/WO2005035792A2/en not_active Ceased
- 2004-05-21 GE GEAP20049126A patent/GEP20125384B/en unknown
- 2004-05-21 EP EP04809404A patent/EP1631690A2/en not_active Withdrawn
- 2004-05-21 US US10/851,779 patent/US8694263B2/en active Active
-
2005
- 2005-11-22 IL IL172093A patent/IL172093A0/en unknown
- 2005-12-23 NO NO20056160A patent/NO20056160L/no not_active Application Discontinuation
Also Published As
| Publication number | Publication date |
|---|---|
| CA2526810A1 (en) | 2005-04-21 |
| KR20060103813A (ko) | 2006-10-04 |
| RU2005140278A (ru) | 2006-06-27 |
| WO2005035792A2 (en) | 2005-04-21 |
| JP2006525814A (ja) | 2006-11-16 |
| WO2005035792A3 (en) | 2006-03-09 |
| RU2390561C2 (ru) | 2010-05-27 |
| EP1631690A2 (en) | 2006-03-08 |
| US20050032095A1 (en) | 2005-02-10 |
| US8694263B2 (en) | 2014-04-08 |
| AU2004280531A1 (en) | 2005-04-21 |
| AU2004280531B2 (en) | 2010-03-25 |
| NO20056160L (no) | 2006-02-23 |
| BRPI0410636A (pt) | 2006-07-18 |
| IL172093A0 (en) | 2009-02-11 |
| NZ544235A (en) | 2009-12-24 |
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