Classifications

• • G—PHYSICS
  • G01—MEASURING; TESTING
  • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
  • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
  • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
  • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
  • G01N21/64—Fluorescence; Phosphorescence
  • G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
• • G—PHYSICS
  • G01—MEASURING; TESTING
  • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
  • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
  • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
  • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
  • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
  • G01N33/531—Production of immunochemical test materials
  • G01N33/532—Production of labelled immunochemicals
  • G01N33/533—Production of labelled immunochemicals with fluorescent label
• • G—PHYSICS
  • G01—MEASURING; TESTING
  • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
  • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
  • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
  • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
  • G01N33/58—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances
  • G01N33/582—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances with fluorescent label

Definitions

• the present invention relates to the field of fluorescent markers and, more specifically, their use for the detection of biological target in a sample.
• CMF flow cytometry
• FACS fluorescence-activated cell sorting
• Flow cytofluorometry is a technique commonly used for individual cell analysis. It makes it possible to separate cell subpopulations both on the basis of their size and on the basis of the presence or absence of markers specific to their surface. The detection of these surface markers is then carried out by specific ligands coupled to fluorophores.
• CMF is commonly used for the immunological analysis of blood cells with many applications for diagnostic purposes such as immuno-phenotyping of leukemias and lymphomas.
• These approaches require the use of fluorescent conjugates based on monoclonal antibodies (AcMx) and other specific probes coupled to various fluorochromes covering a wide range of colors (wavelengths) within the visible light spectrum.
• AcMx monoclonal antibodies
• fluorochromes covering a wide range of colors (wavelengths) within the visible light spectrum.
• these molecules are capable of generating fluorescence signals of spectra complementary to that of fluorescein, the main fluorochrome known as excitable by the 488 nm blue laser. But this type of laser has long been the only source of light excitation which was equipped with the first cytofluorometers.
• PE phycoerythrin
• PE phycoerythrin
• FITC fluorescein isothiocyanate
• PE has therefore for many years been a particularly interesting fluorochrome not only for CMF, but more broadly for all methods of analysis, detection or separation based on receptor / ligand-type molecular interactions.
• the excitation (absorption) spectrum of the PE is generally described starting at 450 nm and comprises firstly a secondary peak at 490 nm and then a major peak at 560 nm.
• PE has always been used with excitation light sources of wavelengths between 488 and 561 nm, and there is no reason to imagine that it would be a satisfactory fluorochrome with excitation at a wavelength of wave of the order of 405 nm.
• the inventors of the present invention have now demonstrated that it was possible to use phycoerythrin as a fluorochrome, not only with lasers emitting between 488 and 561 nm, but also with a laser to violet (405 nm).
• the present invention therefore relates to an unprecedented use of PE and its derivatives, such as its tandem derivatives, using an excitation wavelength close to 405 nm instead of the conventional 488 nm or 560 nm.
• the invention relates to a method for detecting at least one molecule of interest in a sample, comprising the steps of: i) bringing the sample into contact with a ligand that is specific for this molecule; interest and which is coupled to a fluorochrome consisting of phycoerythrin or one of its derivatives,
• step ii) Exciting the mixture of step i) with at least one light source of wavelength between 330 nm and 425 nm,
• step iii) detecting a light emission by mixing after step ii) at a wavelength greater than or equal to 550 nm, and iv) determining the presence or absence of the molecule of interest in the sample against the results obtained in step iii).
• the method of the invention can thus be implemented on a suitable system comprising at least one ligand coupled to a fluorochrome consisting of phycoerythrin or one of its derivatives, at least one light source emitting light of wavelength between 330 nm and 425 nm and at least one detector of the light emitted by the fluorochrome thus excited.
• the method in question may also aim for the simultaneous detection of a second, a third, a fourth or even a fifth (or umpteenth) molecule of interest in the same sample.
• Another subject of the invention relates to the use of a fluorochrome consisting of phycoerythrin or one of its derivatives for the detection of at least one molecule of interest in a sample characterized in that the wavelength excitation is used between 330 nm and 425 nm, preferably at 405 nm.
• Figure 1 shows the absorption / excitation spectra (broken dashed lines) and emission (continuous lines and areas under gray curves) of phycoerythrin (R-PE) as well as three of its R-PE tandems.
• R-PE phycoerythrin
• -TexasRed, R-PE-Cy5.5 and R-PE-Cy7 adapted from Fluorescence SpectraViewer, Thermofisher Scientific.
• the wavelengths (in nm) are on the abscissa and the ordinate axis shows the relative intensities of absorbance or emission (in%).
• the curves are only described from 400-450 nm with obvious excitation peaks around 490, 530 and 560 nm for the R-PE.
• R-PE-Cy5.5 660 nm
• R-PE-Cy7 760 nm
• the emission spectrum of the R-PE is a Gaussian centered on 575 nm.
• the tandem emission spectra are shifted toward longer wavelengths and are centered on 615 nm (R-PE-Texas-Red), 694 nm (R-PE-Cy5.5) and 776 nm (R-PE-Cy5.5). PE-Cy7).
• Figures 2 to 8 illustrate the absence of leakage of phycoerythrin excited by the blue laser in the reading channel of the violet laser.
• Polystyrene beads coated with increasing amounts of R-PE serve as calibrators and are excited by blue and violet lasers.
• FL2 corresponds to the signals coming from the blue laser (488 nm) and passing through a filter 575 BP 30, behind a dichroic mirror 595 DC SP.
• FL10 corresponds to the signals from the violet laser (405 nm) and passing through an identical filter 575 BP 30, after reference by a dichroic mirror 480 DC SP.
• the nominal powers of the blue and violet lasers are respectively 22 mW and 40 mW (FIGS. 2 and 5).
• the singlet beads are first pre-selected by the "beads" region in a double scatter analysis and their FL2 and FL10 fluorescence analyzed correlatively.
• the nominal power of the blue laser is reduced to 10 mW ( Figure 3) then 5mW ( Figure 4) while the nominal power of the violet laser is maintained at 40 mW.
• the nominal power of the violet laser is reduced to 10 mW ( Figure 6) then 5m W ( Figure 7) while the nominal power of the blue laser is maintained at 22 mW.
• the violet laser was blocked by an iris being analyzed to artificially pass its nominal power from 40 mW to 0 mW; the nominal power of the blue laser is kept constant at 22 mW ( Figure 8).
• Figure 9 illustrates the ability of PE-Cy5.5 excited by a violet laser to discriminate a strongly labeled sample from a weakly labeled sample.
• Capture beads coated or not with a variable amount of goat anti-mouse antibody are brought into the presence of anti-CD45-PE-Cy5.5 conjugated antibody.
• the sample is excited successively by the violet and blue lasers, the separations in space and time allowing differentiated analyzes of the fluorescence signals from each of the lasers.
• FL4 corresponds to the signals from the blue laser (488 nm) and passing through a filter 695 BP 30, behind a dichroic mirror 730 DC SP to collect the fluorescence of PE-Cy5.5.
• FL10 corresponds to the signals from the violet laser (405 nm) and passing through an identical filter (695 BP 30), after reference by a dichroic mirror 480 DC SP.
• Figure 10 shows the identification of blood cell subpopulations by flow cytometry of normal hematopoietic cells performed on the basis of the CD45 marker.
• the excitation of the anti-CD45-PE conjugate at 488 nm is illustrated by Figures (A), (C) and (E).
• Excitation of the anti-CD45-PE conjugate at 405 nm is illustrated by Figures (B), (D) and (F).
• the identification and quantification of blood cell subpopulations is shown in Figures (A), (B), (C) and (D).
• Figures (E) and (F) are a representation in mono-parametric histograms of the four subpopulations of lymphocytes (Ly), monocytes (Mo), granulocytes (PM) and residual red blood cells (Ery) of the blood.
• Figure 11 shows the identification of cellular blood subpopulations by flow cytometry of normal and leukemic hematopoietic cells performed on the basis of the CD45 marker.
• LP1 cells serving as a model for abnormal cells with a low level of CD45 expression, were added at a rate of 10% relative to the normal white cells.
• the excitation of the anti-CD45-PE conjugate at 488 nm is illustrated by the figures (A), (C) and (E).
• Excitation of the anti-CD45-PE conjugate at 405 nm is illustrated by Figures (B), (D) and (F).
• the identification and quantification of cell subpopulations of blood supplemented in LP 1 cells are shown in Figures (A), (B), (C) and (D).
• Figures (C) and (D) show only leukaemic blasts.
• Figures (E) and (F) are a representation in combined monoparametric histograms of the lymphocyte (Ly), monocyte (Mo), granulocyte (PMN), residual red blood cell (Ery) and leukemia cell subpopulations. line LP 1 (LP1).
• Figure 12 shows the identification of cellular blood subpopulations by flow cytometry of normal and leukemic hematopoietic cells performed on the basis of the CD45 and CD33 markers.
• the HL60 and NB4 cells acting as a model for abnormal acute myeloid leukemia (AML) cells with low levels of CD45 expression (CD45 low), were added at 50,000 cells / sample.
• Excitation of the anti-CD33-PE-Cy7 conjugate at 488 nm is illustrated in Figure (A).
• Excitation of the anti-CD33-PE-Cy7 conjugate at 405 nm is illustrated in Figure (B).
• Figures (A) and (B) are a two-color bi-parametric representation of the distribution of normal blood cell subpopulations including neutrophils (Neu and PMN2), lymphocytes (Ly), residual red blood cells (RBCs) of the blood, and added leukemia cells (HL60 and NB4).
• neutrophils Neu and PMN2
• Ly lymphocytes
• RBCs residual red blood cells
• a first subject of the invention relates to a method for detecting at least one molecule of interest in a sample, comprising the steps of: i) bringing the sample into contact with a ligand that is specific for this molecule; interest and which is coupled to a fluorochrome consisting of phycoerythrin or one of its derivatives,
• step ii) Excitation of the mixture of step i) by at least one light source of wavelength between 330 and 425 nm, iii) detecting a light emission by mixing after step ii) at a wavelength greater than or equal to 550 nm, and iv) determining the presence or absence of the molecule of interest in the sample against the results of step (iii).
• the inventors have demonstrated, as demonstrated in the examples below, that phycoerythrin has fluorescence properties following its excitation by a 405 nm laser such as to allow its use as a fluorochrome in connection with such a laser. .
• molecule of interest is meant a biological marker whose presence in a sample is suspected.
• a biological marker may be protein, nucleic, carbohydrate, lipid or glycolic lipid.
• the biological marker detected by the method of the invention is a protein, a lipid, a carbohydrate, a lipid structure, glycolipidic structure or a carbohydrate unit. -.
• the biological marker detected by the method of the invention is a protein.
• Sample refers to any type of biological sample consisting of tissues (muscle, bone, organ, etc.), body fluids (blood, saliva, urine, tears, sperm, milk, bronchoalveolar fluid, pleural fluid, cerebrospinal fluid, etc.), liquid suspensions containing molecules of interest, particularly particles, particularly cells, eukaryotic or prokaryotic, such as in vitro culture media or fermentation liquids, bathing waters or consumption, injectable liquids.
• tissues muscle, bone, organ, etc.
• body fluids blood, saliva, urine, tears, sperm, milk, bronchoalveolar fluid, pleural fluid, cerebrospinal fluid, etc.
• liquid suspensions containing molecules of interest particularly particles, particularly cells, eukaryotic or prokaryotic, such as in vitro culture media or fermentation liquids, bathing waters or consumption, injectable liquids.
• the sample used in the detection method of the invention "comprises or is likely to comprise prokaryotic or eukaryotic cells, preferably eukaryotic cells, preferably derived from the animal body, in particular human.
• the molecule of interest to be detected may be intracellular or anchored to the plasma membrane of the cell.
• the molecule of interest is present in the sample at a density of at least 1000 copies per cell, more preferably at least 2500 copies per cell, more preferably at least 5000 copies per cell.
• the molecule of interest is present on / in the cells of the sample at a density ranging from 1,000 to more than 2,000,000 copies per cell, more preferably from 7,500 to 1,500,000 copies per cell. more preferably still from 10,000 to 150,000 copies per cell.
• the molecule of interest is present on / in the cells of the sample at a density of at least 7,500 copies per cell.
• ligand is meant a macromolecule capable of physically binding with. the molecule of interest targeted, and this in a reversible way. This interaction is made possible by the existence of areas of complementarity between the molecule of interest and the specific ligand.
• the binding between the ligand and the molecule of interest is by the establishment of non-covalent bonds, for example by electrostatic bonds, Van Der Waals forces, ionic bonds or hydrogen or through hydrophobic interactions.
• the ligand can then be an "antibody, an antibody fragment or derived constructs (Fab ,, Fab'2, nanobody, aptamer, affimer ).
• the ligand may be a bacterial lectin or toxin (eg FLAER for its affinity for the glyco-phosphatidyl-inositol anchors of many membrane antigens).
• the ligand may be an affine protein such as (but not limited to) annexin, lactadherin, cholera toxin,. ..
• the molecule of interest is a hapten (biotin, DNP, poly-His ...), avidin, streptavidin anti-hapten antibodies can be involved.
• association stability between the ligand and the molecule of interest is quantifiable by determining the association or equilibrium constant (Ka) characteristic of this link .
• Ka association or equilibrium constant
• This constant is equal to the ratio between the concentration of the ligand-molecule of interest complex and the product of the concentration. of free ligand and molecule of free interest. For this bond to be qualified as specific, it must be greater than or equal to 10 6 L.mol "1 .
• the ligand contacted with the sample in the detection method of the invention is anticoipses.
• fluorochrome is meant any type of compound capable, after having been irradiated with a light beam in a range of wavelengths ranging from ultraviolet to infrared, to emit back a photon of lesser energy. Irradiation causes fluorescence which is typically an illumination. The emission of photons occurs during electronic transitions of a molecule of an excited state resulting from the absorption of light energy to a ground state (relaxation). Thus, the absorption of a photon by a fluorochrome leads to the emission of another photon of longer wavelength and lower energy than those of the exciter photon.
• each fluorochrome has an absorption spectrum, a spectrum of excitation and a spectrum of emission which are its own.
• the absorption spectrum of a fluorochrome is defined by its range of absorbed wavelengths, regardless of its excitation.
• the excitation spectrum of a fluorochrome is defined by its range of wavelengths effectively inducing excitation and also reflects the range of excited states that the fluorochrome can reach.
• the fluorochrome is excited at a wavelength different from its excitation maximum, the emission length is then the same, but the fluorescence intensity is lower.
• the efficiency of the fluorescent light emission for a given fluorochrome is determined by the quantum efficiency phi ( ⁇ ) defined by the ratio between the number of fluorescence photons emitted and the number of photons absorbed by the fluorochrome.
• phi quantum efficiency
• fluorochromes have quantum efficiencies between 0.1 and 1.
• the quantum efficiency ⁇ being independent of the excitation wavelength (Kasha's law), the shape of the emission spectrum of a Fluorochrome is invariant regardless of the wavelength of the excitatory light source. However, the intensity of the emission spectrum of a fluorochrome varies according to the excitation wavelength.
• the absorption intensity, or extinction coefficient ⁇ , or specific absorbance, reflects the absorption probability: the higher ⁇ is and the higher the fluorescence at equal light intensity.
• the fluorescence intensity or brightness of a fluorochrome is determined by the product of the extinction coefficient and the quantum yield. The higher the product, the brighter the fluorochrome.
• fluorophore, fluorochrome or fluorescent probe are equivalent and may be used interchangeably.
• phycoerythrin proteins of the family of phycobiliproteins extracted from cyanobacteria, red algae and certain Cryptophytes.
• Phycobiliproteins consist of an apoprotein covalently bound to a chromophore called phycobilin.
• the apoprotein has a monomeric structure comprising two distinct polypeptides called ⁇ and ⁇ subunits, organized as trimer ( ⁇ ) 3 or hexamer ( ⁇ ) 6 . These typical complexes - may also contain a third type of subunit, the ⁇ chain.
• the absorbance characteristics of phycobiliproteins are due to the existence of open-chain tetrapyrrole prosthetic groups which are linked to the ⁇ , ⁇ and ⁇ subunits by means of a thioether linkage with a cysteine residue of at least one of the polypeptides.
• Phycoerythrobilin and phycourobilin (PUB) are the two main types of phycoerythrin tetrapyrrole prosthetic groups extracted from red algae.
• C-PE C-phycoerythrin
• CU-PE CU-phycoerythrin
• b-PE b-phycoerythrin
• B-PE B-phycoerythrin
• R-PE R-phycoerythrin
• the ratio between the number of PEB and PUB groups defines the spectroscopic properties of the different phycoerythrins.
• the maximum excitation peak of the PEs generally ranges from about 545 nm (b-PE) to about 565 nm (R-PE).
• the fluorochrome is phycoerythrin-R (R-PE), and preferably the PE used in the detection method of the invention is extracted from red algae.
• the absorption spectrum of phycoerythrin is measured over a range of 400-450 nm at 600 nm and shows 3 major peaks of abso ⁇ tion corresponding to the maximum absorption intensities located around 490 nm, 530 nm. and 560 nm, CMF's literature and all instructional manuals instruct the user to choose one of these 3 absorption peaks, taking advantage of the most accessible CMF laser sources such as the 488 nm blue laser, present in almost all devices in the current market, green at 530 nm and more recently a yellow laser at 560 nm.
• the very low absorption at about 400 nm would allow a satisfactory excitation of the PE and thus the obtaining of a fluorescence applicable to the identification of sub-populations of hematological cells of potential diagnostic interest. like leukaemic blasts in human blood and moreover, reproducible. Indeed, a fluorochrome that absorbs light at a given wavelength is not necessarily excited effectively at this wavelength.
• the excitation spectrum of a substance is obtained using a spectrofluorimeter by measuring the fluorescence emitted at a fixed wavelength and by varying the excitation wavelength.
• the fluorescence emission spectrum is always shifted towards the long wavelengths relative to the absorption spectrum.
• the emission spectrum of a substance is obtained by measuring the fluorescence emitted at different wavelengths emission, exciting with a fixed wavelength. Unlike most fluorochromes, the emission spectrum of PE does not correspond to a simple shift to longer lengths of its absorption spectrum. As illustrated in FIG. 1, the emission spectrum of the PE is a Gaussian centered on 575 nm, whereas the excitation spectrum shows a complex shape with a multiplicity of maxima.
• the emission of the PE is however detectable from 550 nm. If the shape of the fluorescence emission spectrum does not depend on the excitation wavelength, the intensity of the fluorescence radiation is directly proportional to the power of the excitation beam absorbed by the fluorophore.
• this fluorophore with either a blue light source, with a wavelength ranging from 480 nm to 500 nm, or a green / yellow light source, with a wavelength ranging from 530 to 565 nm.
• Chromophores of PEs extracted from Cryptophytes contain
• the fluorochrome is:; phycoerythrin-R (R-PE), and preferably the PE used in the detection method of the invention is extracted from red algae.
• R-PE R-PE
• SMCC Lyo
• RPE ref Ll or L1 SM dispensed by FEBICO
• FEBICO liquid form
• PhycoPro TM RPE ref PB32 distributed by i: PROZYME or R-phycoerythrin, P801 reference distributed by INVITROGEN
• FEBICO ammonium sulphate precipitate
• the coupling of the fluorochrome with the ligand is carried out according to the techniques well known to those skilled in the art (M. Roederer, Conjugation of monoclonal antibodies (August 2004, http://www.drmr.com/abcon/)) . Briefly, after extraction and purification of the PE, it is activated chemically to make it reactive towards the thiol groups. The ligand undergoes a reduction step which allows the release of thiol groups ready to react. The covalent coupling of the ligand with the PE can then be performed.
• kits containing all the reagents necessary to carry out the conjugation of the PE with the ligand eg PhycoLink® R-Phycoerythrin Conjugation Kit, PJ31K reference sold by PROZYME, R-Phycoerythrin Conjugation Kit, Abl ref 02918 marketed by Abcam).
• tandem complexes By “phycoerythrin derivatives” is meant the tandem complexes formed between the PE and another fluorescent compound. The establishment of a covalent bond between the PE and this second fluorescent compound allows resonance energy transfer from the PE to this second fluorescent compound.
• the PE is referred to as a donor fluorochrome and the second fluorescent compound is called a fluorochrome acceptor.
• the purpose of these tandems is to obtain a resonance energy transfer (FRET) and consequently a large displacement between the primary excitation of the donor fluorochrome and the emission of the acceptor fluorochrome (Stokes displacement).
• FRET resonance energy transfer
• the tandem complexes made on the PE have an excitation / absorption spectrum corresponding to that of the PE and an emission spectrum corresponding to that of the second fluorescent compound.
• Y-PE tandem complexes with Y any donor fluorochrome emitting after excitation a photon captured by the PE (ie fluorochrome acceptor) are excluded from the definition of phycoerythrin derivatives within the meaning of the present invention.
• PE is always the donor fluorochrome.
• the step of contacting the sample with the specific ligand of the molecule of interest is carried out in a liquid medium, preferably in aqueous solution.
• light source is meant a device capable of emitting a monochromatic light beam.
• the light source can be a laser, an arc lamp or a light emitting diode (LED).
• Arc lamps eg mercury, xenon-mercury
• a laser provides coherent light from a few milliwatts to several watts, with a narrow, well-defined and specific wavelength. Many lasers of different types are currently available.
• Some lasers commonly used historically in CMF include argon lasers (351, 454, 488, 514 nm), krypton (406, 488, 532, 630 nm), helium-neon (632 nm), helium cadmium (325, 441). nm), Yag lasers (532 nm) and violet lasers (405 nm).
• DPSS diode-pumped solid state
• Jadite at least one light source for the excitation of-. mixture of step i) in the process of the invention has a wavelength between 3.30 and 425 nm, preferably between 350 and 420 nm, more preferably between 360 and 410 nm.
• said at least one light source for exciting the mixture of step i) in the method of the invention a. a wavelength between 400 and 410 nm and preferably at 405 nm.
• said at least one. light source for exciting the mixture of step i) in the process of. . the invention is a violet laser or a violet laser diode emitting at a length of 405 nm.
• Step ii) of exciting the mixture of step i) corresponds to an illumination thereof by at least one light source.
• the sample contains the molecule of interest and the ligand coupled to a fluorochrome has attached thereto, the light emitted by the mixture subsequent to step ii) is collected at an equal wavelength or greater than 550 nm, which corresponds to the beginning of the emission spectrum of the PE alone.
• the maximum emission wavelengths of the tandems PE-TEXASRED TM, PE-Cy5 TM, PE-Cy5.5 TM, PE-Cy7 TM, PE-Alexafluor TM 610, PE-Alexafluor TM 647 , PE-DyLight TM 594, PE-Dyomics TM 590 and RT665 TM are 613 nm, 670 nm, 690 nm, 775 nm, 628 nm, 665 nm, 618 nm, 599 nm and 680 nm, respectively.
• These emission wavelengths may vary from a few nanometers depending on the source and the extraction / purification protocol of the fluorophore. They represent the center of the optimal fluorescence collection zone which is often 20 to 50 nm wide, usually 30 nm, depending on the presence or absence in the analysis of other fluorochromes of nearby spectra.
• a significant advantage of the excitation of the PE and its derivatives with a light source of wavelength between 360 and 410 nm, preferably 405 nm, is that it generates a very important Stokes shift between the wavelength of excitation and the emission wavelength, thus making it possible to use fluorescence filters (for PE) which are much less efficient and expensive than those required by excitation with a light source of wavelength at 488 nm, even even more at 530 nm or 560 nm.
• Step iii) detecting light emitted by the mixture after excitation in step ii) is performed using an optical detector which can be a photomultiplier (PMT).
• PMT photomultiplier
• the signal emitted in the form of photons is converted by the photomultiplier into a quantifiable electrical signal.
• the method of the invention further allows the simultaneous identification of at least one second, but also. potentially at least a third, a fourth, or even a fifth (or umpteenth) molecule of interest in the sample.
• Such identification relies in particular on the use of a first ligand coupled to the PE and a second, third, fourth or even fifth ligand coupled to one of its tandems.
• the light source having a wavelength of between 330 and 425 nm, preferentially 405 nm, makes it possible to simultaneously excite the PE and its tandem (s), which provide fluorescence of offset spectra.
• the simultaneous identification of a second molecule of interest can be carried out using a second fluorophore excitable by a light source of the same wavelength as that used for excite the PE or one of its derivatives, but which has an emission spectrum distinct from that of the PE or one of its derivatives.
• the light source having a wavelength of between 330 and 425 nm, preferably 405 nm makes it possible simultaneously to excite PE and / or one of its tandems and fluorochromes specifically created to be excitable at such lengths. 'wave.
• fluorochromes include SYTO40, DAPI, DyLight® 405, Brilliant Violet 421 TM, HiLyte Fluor TM 405, Pacific Blue TM, Pacific Orange TM, Cascade® Blue, Alexa Fluor® 405, eFluor® 450, BD TM Horizon TM V450 , VioBlue®, VioGreen TM, Krome Orange TM, Calcein Violet 450 AM TM, Zombie Violet TM, Aminbmethylcoumarin (AMCA) or some Q-dot® 565/605/625/655/705/800.
• the identification of a second molecule of interest can be carried out using a second fluorophore excitable by a light source of wavelength distinct from that used to excite PE. or one of its derivatives and has an emission spectrum shifted from that of the PE or one of its derivatives.
• This particular embodiment requires at least two light sources, one of wavelength between 330 and 425 nm, preferably 405 nm, for simultaneously exciting the PE and / or one of its tandems and the second a higher wavelength light source such as for example a 530 nm or 560 nm laser or a 635/640 nm laser / diode, for exciting a second fluorophore distinct from the PE and / or one of its derivatives.
• a 530 nm or 560 nm laser or a 635/640 nm laser / diode for exciting a second fluorophore distinct from the PE and / or one of its derivatives.
• Step iv) of determining the presence or absence of the molecule of interest in the sample is based on the comparison of the results obtained in step iii) in this sample with those obtained for a reference sample which is known to be it does not contain the molecule of interest.
• step iv) can also be used to calculate the number of copies of the molecule of interest in the sample. This quantification step can be performed in comparison with a standard range containing increasing and known amounts of the targeted molecule of interest.
• the method for detecting at least one molecule of interest in a sample according to the invention can be implemented on a flow cytometer.
• the detection method of the invention may be used for the separation, analysis or counting of cellular or particulate subpopulations in a biological sample.
• the detection method of the invention may be used for the separation, analysis or counting of cellular or particulate subpopulations of hematopoietic origin.
• a second subject of the invention relates to the use of a fluorochrome consisting of phycoerythrin or one of its derivatives for the detection of at least one molecule of interest in a sample, characterized in that the length of The excitation wave of the fluorochrome is between 330 and 425 nm, preferably between 350 and 420 nm, more preferably between 360 and 410 nm. According to a particular embodiment of the invention, the excitation wavelength of the fluorochrome is between 400 and 410 nm and preferably at 405 nm.
• Some assay devices such as flow cytometers or cell sorters, can have up to 6 additional lasers in addition to the 405 nm violet laser.
• these instruments are now equipped with 3 lasers namely i) a laser
• a 405 nm violet laser which illuminates the cells above / before the blue laser reference illumination point.
• This multi-point illumination system allows a double optical and temporal separation of the fluorescences coming from each of the illumination points. Indeed, the signal coming from each of the 3 lasers is i) shifted in time by a delay of the order of
• the operation of a multi-laser cytometer involves the excitation of the particles to be analyzed by each of the lasers in an offset manner, in space and in time. Each cell / particle passes successively through the light beams.
• a GALLIOS TM / NAVIOS cytometer (Beckman - Coulter, Villepinte, F) with 3 lasers (purple - blue - red or 405-488-640 nm), the order of passage is violet - blue - red, the distance between the points impact is -100 ⁇ and the delay of ⁇ 30 ⁇ .
• the pick-up lens picks up the lights emitted at the three points of impact and focuses them on three independent optical fiber inputs, which then lead the light to a system. optical capable of independently dissociating the wavelengths from each of the optical fibers.
• Each laser works routinely at a fixed power rating (violet 40 mW- blue 22 mW - red 25 mW).
• a fixed power rating violet 40 mW- blue 22 mW - red 25 mW.
• polystyrene beads with a diameter of 10 ⁇ and covered with varying amounts of PE are used as calibrators: the C1, C2, C3 and C4 beads have respectively 900, 7500, 1 15 000 and 1 250 000 R-PE / bille molecules .
• Two batches of beads were synthesized and suspended in a solution of PBS + 0.1% BSA + 0.1% sodium azide.
• Violet laser 40 - 30 - 20 - 5 - 1 mW
• the blue laser must always remain functional since serving t 0 . It can be lowered in power but not completely blocked, unlike the other 2 lasers.
• the arrangement of the filters of the optical bench has been modified to optimize the detection of fluorescence signals of the PE carried by the fibers coupled to the respective focusing points of the blue and violet lasers.
• two identical copies of a bandpass filter 575 BP 30, optimal for the PE are used in parallel, one in front of the FL2 detector and the other in front of FL 10.
• the FL2 channel thus measures the PE signal coming from the blue laser (488 nm) and passing au-through filter 575 BP 30, behind a dichroic DC 595 SP.
• FL10 corresponds to the PE signals from the. "violet laser (405 nm) passing through a filter 575 BP 30 the same, after return by a mirror dichroic 480 DC SP.
• the nominal powers of the blue and violet lasers are respectively 22 mW and 40 mW (figure 2, scale 4 decades and figure 5, scale 5 decades).
• the singlet beads are first pre-selected by the "beads" region in a double scatter analysis and their FL2 and FL10 fluorescence analyzed correlatively.
• the nominal power of the blue laser is reduced to 10 mW ( Figure 3) then 5mW ( Figure 4) while the nominal power of the violet laser is maintained at 40 mW.
• the nominal power of the violet laser is reduced to 10 mW ( Figure 6) then 5mW ( Figure 7) while the nominal power of the blue laser is maintained at 22 mW.
• FIG. 5 The reference (FIG. 5) remains identical to FIG. 2 but with the use of scales at 5 decades.
• the power drop of the violet laser from 40 mW (FIG. 5) to 10 mW (FIG. 6) then to 5 mW (FIG. 7) reduces the intensity of all the peaks in FL10 (FIG. PE from the violet laser) without any impact on fluorescence in FL2 (PE from the blue laser).
• Mouse Ig (immunoglobulin) capture beads are labeled with various conjugates. E and / or tandems of the PE. 3 marking levels so produced are ⁇ analyzed using the same bandpass filter FL2 respectively, FL4 and FL5 (excitation 488 nm reference PE respectively, PE-Cy5, and PE-Cy7) and FL10 (excitation 405 nm tested, filtered with the same filter as that used for respectively PE, PE-Cy5 and PE-Cy7).
• FL2 bandpass filter
• FL4 and FL5 excitation 488 nm reference PE respectively, PE-Cy5, and PE-Cy7
• FL10 excitation 405 nm tested, filtered with the same filter as that used for respectively PE, PE-Cy5 and PE-Cy7).
• Beads of captured Ig (H + L) mouse with a diameter of 7 ⁇ SPHERO-COMPROI Particles, ref. CMIgP-70-3K marketed by SPHEROTECH, Inc. are used according to the supplier's instructions.
• the three populations of beads correspond to a negative control, a weakly charged bead and a bead heavily loaded with goat anti-mouse antibody and consequently with conjugated mouse Ig.
• the same bandpass filter as that of the optimum FLi of the blue laser i.e. FL2, 4 or 5 is taken on a second Gallios TM cytometer similar to that of the test and placed on the FL10 channel.
• R2 AI / AH 2 3 4 3
• R2 a weakly marked vs. unlabeled sample
• the values of the ratios show that the excitation of the PE, PE-Cy5, PE-Cy5.5 and PE-Cy7 by a violet laser allows an excellent discrimination between a strongly marked vs. weakly marked sample, and even more so between a strongly labeled vs. unlabeled sample. Although to a lesser extent compared to what is observed during blue laser excitation, it is also possible to discriminate between a weakly labeled and unlabeled sample.
• the model used consists of whole blood (WB) taken on EDTA containing an abnormal cell type represented here by the LP1 multiple myeloma line. This model illustrates a case of detection of leukemic hematopoietic cells which can be assimilated here to blasts.
• LP1 cells were added to the whole blood sample at a concentration of 10% relative to the total white cells. 4.2 - Marking of the cells
• the characterization of the different cell populations present in the sample was carried out using an anti-CD45 monoclonal antibody coupled to PE (BioCytex).
• the density of CD45 is of the order of 200,000 molecules / lymphocyte versus 120,000 molecules / monocyte, respectively, 217 + 64 ⁇ 10 3 vs 103 ⁇ 44 ⁇ 10 3 , according to BIKOUE et al., (Cytometry, 26: 137-147 ( 1996)).
• the technique involves incubating whole blood cells in the presence of anti-CD45-PE.
• the red blood cells are then lysed, the remaining cells (white blood cells) are washed to remove the unbound fluorescent conjugate and analyzed by flow cytometry.
• LP1 cells not being completely isolated from normal granulocytes (PMN) in a CD45 x SSC graph, a complementary parameter was used here ie a blue auto-fluorescence of LP1 cells in FL9 (Ex 405 nm / Em 460 / 20 nm) greater than those of normal blood cells which facilitates their identification and the colorization of the illustrated subpopulations.
• the "side scatter” (SS) parameter allows the discrimination of the 3 major leukocyte subpopulations -i.e. lymphocytes, monocytes and granulocytes (also noted PMN for polymorphonuclear nuclear).
• LP1 cells over-add to the usual array, positioned at the same SS level as the PMNs, and above the PMNs in forward scatter (FS) parameter.
• the FS x SS graph also helps to put an analysis window on the residual red blood cells (RBCs) remaining after lysis.
• the labeled cells were analyzed on a Gallios TM flow cytometer (Beckman Coulter). The analysis was carried out on approximately 30 ⁇ of labeled sample, acquiring at least 7000 events at a speed of 60 ⁇ / ⁇ . for 30 seconds. The data was analyzed using KALUZA ® computer software (Beckman Coulter).
• the voltages of the PMTs FL2 and FL10 were respectively 350 V and 420 V and the light signals filtered by the same type of filter 575 nm / 30 (standard filter FL10 replaced by a filter 575 nm / 30) so as to collect on FL2 and FL10 the fluorescence of the PE excited respectively by the 488 nm blue laser and the 405 nm violet laser.
• the analysis strategy firstly includes conditioning all the cells in a size / structure analysis window.
• the PE fluorescence of the different cell subpopulations can be visualized on a bi-parametric graph representing the intensity of fluorescence on the y-axis according to a parameter related to the granularity of the cells (SS) and which allows a first classification of the leucocytes in the order of intensity SS, ie from left to right lymphocytes, monocytes and granulocytes / PMN (and LP1 in the case of LP1 overload) and on the abscissa the number of events.
• the software renders an average fluorescence intensity (MFI) for each tube.
• MFI average fluorescence intensity
• the cells of the LP1 line are, on the other hand, isolated by the combination of two parameters, ie their size, seen on the FS parameter (more important than the other leucocytes) and their detectable auto-fluorescence in FL9 (460 nm + / - 20 nm).
• the comparison of the CD45-PE vs SS graphs shows fairly similar distributions that the PE is excited by the blue laser (488 nm / FL2) or by the violet laser (405 nm / FL10). Both conditions allow good CD45 vs SS discrimination of major cell subpopulations of whole blood.
• the ratio between the MFIs of the cell subpopulations is calculated and illustrated in the table below.
• the discriminations that are observed, after independent excitation of,. the PE by a 488 nm blue laser (reference) and a 405 nm violet laser between sub- ⁇ -; cell populations marked at various levels by this fluorochrome show that the PE can be used as a fluorochrome with a violet laser, by making it possible to discriminate between cellular subpopulations of interest, such as the sub-populations. populations of: normal blood leukocytes and leukemic cells after labeling with a CD45 antibody.
• the model used consists of whole blood (WB) taken on EDTA containing two
• LAM lines HL60 and NB4 LAM lines HL60 and NB4. These models illustrate a case of detection of leukemic hematopoietic cells which can be assimilated here to blasts.
• . . HL60 and NB4 cells were mixed at a concentration of 5 million / ml: - in PBS-BA. 10 ⁇ l of this mixture were added to 50 ⁇ l of whole blood sample, ie 50,000 cells of the HL60 and NB4 mixture for 50 ⁇ l of whole blood.
• the characterization of the different cell populations present in the sample was carried out using an anti-CD45 monoclonal antibody coupled to PE (BioCytex) used alone or in multi-color labeling in the presence of other fluorescent reagents including an anti-CD33 monoclonal antibody coupled to PE-Cy7.
• PE BioCytex
• the technique involves incubating the overloaded whole blood in HL60 and NB4 cells in the presence of anti-CD45-PE alone or in combination with anti-CD33 coupled to PE-Cy7. The red blood cells are then partially lysed, the remaining cells are washed to remove the unbound fluorescent conjugate (s), and analyzed by flow cytometry.
• red blood cells The efficiency of lysis of red blood cells was voluntarily limited to keep in the analysis a significant presence of residual red blood cells, useful for the demonstration. In fact, the residual red blood cells are by definition negative for all the markers tested.
• cell subpopulations normal cells and leukaemic blasts
• CD45 x SSC system not shown here
• CD33 x SSC system Fig 12A and B
• CD33xCD45 system Fig 12C and D
• the labeled cells were analyzed on a Gallios TM flow cytometer (Beckman Coulter). The analysis was carried out on approximately 30 ⁇ of labeled sample, acquiring at least 7000 events at a speed of 60 L / min. for 30 seconds. The data was analyzed using KALUZA ® computer software (Beckman Coulter).
• the voltages of the PMTs FL5 and FL10 were respectively 600 V and 900 V and the luminous signals filtered by the same type of filter 755 nm long pass (standard filter FL10 replaced by a 2 nd filter 755 nm long pass identical to that placed in FL5 ) so as to collect on FL5 and FL10 the fluorescence of the PE-Cy7 excited respectively by the 488 nm blue laser and the 405 nm violet laser.
• the analysis strategy firstly includes conditioning all the cells in a size / structure analysis window.
• the PE or PE-Cy7 fluorescence of the different cellular subpopulations can be visualized on a bi-parametric graph representing the intensity of fluorescence on the ordinate as a function of a parameter related to the granularity of the cells (SS) on the abscissa, and which allows a first classification of leukocytes in order of intensity SS, ie from left to right lymphocytes, monocytes and granulocytes / PMN (and blasts in the case of overload in HL60 + NB4).
• the software For each cell type defined on the graph by a region of interest, the software renders a percentage of all the cells present in the graph and a mean fluorescence intensity (MFI, denoted "Y-Med").
• the comparison of the CD33-PE-Cy.7 (CD33-PC7) vs SS graphs shows similar cellular distributions that the PE-Cy7 (PC7) is excited by the laser blue (488 nm / FL5) or the violet laser (405 nm / FL10). Both excitation conditions allow good CD33 vs SS discrimination of whole cell subpopulations (lymphocytes, monocytes, PMN and residual red blood cells) of whole blood as well as leukaemic blasts (HL60 and NB4). Moreover, the • ⁇ ? blasts are differentiated by the level of CD33 expression: HL60 cells have a higher level of CD33 expression than that observed for NB4 cells.
• the 'discrimination that are observed after separate excitation of PE-Cy7 by a blue laser 488 nm (reference) and a violet laser 405 nm between subpopulations of cells labeled at various levels by the fluorochrome show that the PE-Cy7 can be used as a fluorochrome with a violet laser, allowing useful discrimination between cell subpopulations of interest, such as subpopulations of normal blood leukocytes and leukemic cells after labeling with a CD33 anticoips.
• FIGS. 12 (C) and (D) the comparison of the graphs
• CD33-PE-Cy7 FL5) vs CD45-PE (FL2) or CD33-PE-Cy7 (FL10) vs CD45-PE (FL2) shows comparable cell distributions, that the fluorescence measurement is performed in FL5 (exc. nm) or in FL10 (exc 405 nm).
• This bi-parametric analysis even allows better discrimination of two neutrophil subpopulations (Neu and PMN2) on the basis of their level of CD33 expression. The discrimination of residual red blood cells and lymphocytes based on the level of CD45 expression is also better.

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