EP2179041A4 - Zusammensetzungen und verfahren zur identifikation der eigenschaften von unterarten von mycobacterium tuberculosis - Google Patents

Zusammensetzungen und verfahren zur identifikation der eigenschaften von unterarten von mycobacterium tuberculosis

Info

Publication number
EP2179041A4
EP2179041A4 EP08826817A EP08826817A EP2179041A4 EP 2179041 A4 EP2179041 A4 EP 2179041A4 EP 08826817 A EP08826817 A EP 08826817A EP 08826817 A EP08826817 A EP 08826817A EP 2179041 A4 EP2179041 A4 EP 2179041A4
Authority
EP
European Patent Office
Prior art keywords
compositions
identification
methods
mycobacterium tuberculosis
subspecies
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP08826817A
Other languages
English (en)
French (fr)
Other versions
EP2179041A2 (de
Inventor
Christian Massire
Rangarajan Sampath
Lawrence B Blyn
David J Ecker
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Ibis Biosciences Inc
Original Assignee
Ibis Biosciences Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Ibis Biosciences Inc filed Critical Ibis Biosciences Inc
Publication of EP2179041A2 publication Critical patent/EP2179041A2/de
Publication of EP2179041A4 publication Critical patent/EP2179041A4/de
Withdrawn legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/686—Polymerase chain reaction [PCR]
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
    • C12Q2565/60—Detection means characterised by use of a special device
    • C12Q2565/627—Detection means characterised by use of a special device being a mass spectrometer
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/156—Polymorphic or mutational markers
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/16—Primer sets for multiplex assays

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
EP08826817A 2007-06-22 2008-06-23 Zusammensetzungen und verfahren zur identifikation der eigenschaften von unterarten von mycobacterium tuberculosis Withdrawn EP2179041A4 (de)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US94585007P 2007-06-22 2007-06-22
US3788408P 2008-03-19 2008-03-19
PCT/US2008/067911 WO2009017902A2 (en) 2007-06-22 2008-06-23 Compositions and methods for identification of subspecies characteristics of mycobacterium tuberculosis

Publications (2)

Publication Number Publication Date
EP2179041A2 EP2179041A2 (de) 2010-04-28
EP2179041A4 true EP2179041A4 (de) 2010-12-22

Family

ID=40305160

Family Applications (1)

Application Number Title Priority Date Filing Date
EP08826817A Withdrawn EP2179041A4 (de) 2007-06-22 2008-06-23 Zusammensetzungen und verfahren zur identifikation der eigenschaften von unterarten von mycobacterium tuberculosis

Country Status (3)

Country Link
EP (1) EP2179041A4 (de)
WO (1) WO2009017902A2 (de)
ZA (1) ZA201000218B (de)

Families Citing this family (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US9598724B2 (en) 2007-06-01 2017-03-21 Ibis Biosciences, Inc. Methods and compositions for multiple displacement amplification of nucleic acids
US9890408B2 (en) 2009-10-15 2018-02-13 Ibis Biosciences, Inc. Multiple displacement amplification
US20130095489A1 (en) * 2010-05-04 2013-04-18 Centers For Disease Control And Prevention Process for detection of multidrug resistant tuberculosis using real-time pcr and high resolution melt analysis
GB201203903D0 (en) * 2012-03-06 2012-04-18 Vela Operations Pte Ltd Real-time PCR detection of mycobacterium tuberculosis complex
JP7125060B2 (ja) * 2017-01-19 2022-08-24 株式会社カネカ マイコバクテリウム・カンサシイを検出するためのプライマーセット、プローブ、キット及び方法
CN108165561B (zh) * 2017-12-01 2021-06-18 北京蛋白质组研究中心 结核分枝杆菌H37Rv编码基因及其应用
CN108165562B (zh) * 2017-12-01 2021-06-08 北京蛋白质组研究中心 结核分枝杆菌H37Rv编码基因及其应用
CN108165560B (zh) * 2017-12-01 2021-06-08 北京蛋白质组研究中心 结核分枝杆菌H37Rv编码基因及其应用
JP7197676B2 (ja) * 2019-03-04 2022-12-27 三井化学株式会社 細胞壁を有する生物の存在状態の判定方法、及び細胞壁を有する生物の同定方法
CN112481399B (zh) * 2020-12-21 2022-08-30 上海国际旅行卫生保健中心(上海海关口岸门诊部) 一种基于二代测序技术用于结核分枝杆菌mlst分型的引物组及建库方法
CN115029453B (zh) * 2021-11-16 2023-06-16 江汉大学 一种酿脓链球菌的mnp标记位点、引物组合物、试剂盒及其应用

Citations (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5658733A (en) * 1994-04-18 1997-08-19 Mayo Foundation For Medical Education And Research Detection of isoniazid resistant strains of M. tuberculosis
US5851763A (en) * 1992-09-17 1998-12-22 Institut Pasteur Rapid detection of antibiotic resistance in mycobacterium tuberculosis
WO2000036142A1 (en) * 1998-12-11 2000-06-22 Visible Genetics Inc. METHOD AND KIT FOR THE CHARACTERIZATION OF ANTIBIOTIC-RESISTANCE MUTATIONS IN $i(MYCOBACTERIUM TUBERCULOSIS)
WO2003031654A1 (en) * 2001-10-09 2003-04-17 Sj Hightech Co.,Ltd. Microarray comprising probes for mycobacteria species genotyping, m. tuberculosis strain differenciation, and antibiotic-resistant strain detection
US20040110169A1 (en) * 2001-03-02 2004-06-10 Ecker David J. Method for rapid detection and identification of bioagents
WO2004061134A1 (en) * 2002-12-27 2004-07-22 University Of Medicine And Dentistry Of New Jersey Method for single nucleotide polymorphism detection
WO2006067454A1 (en) * 2004-12-23 2006-06-29 Health Protection Agency Detection of nucleic acid mutations

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6892139B2 (en) * 1999-01-29 2005-05-10 The Regents Of The University Of California Determining the functions and interactions of proteins by comparative analysis
JP3565752B2 (ja) * 1999-11-02 2004-09-15 株式会社海洋バイオテクノロジー研究所 Ｄｎａジャイレース遺伝子中に存在する特徴的な塩基配列を用いた遅発育性マイコバクテリアの同定法及び特異的検出法

Patent Citations (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5851763A (en) * 1992-09-17 1998-12-22 Institut Pasteur Rapid detection of antibiotic resistance in mycobacterium tuberculosis
US5658733A (en) * 1994-04-18 1997-08-19 Mayo Foundation For Medical Education And Research Detection of isoniazid resistant strains of M. tuberculosis
WO2000036142A1 (en) * 1998-12-11 2000-06-22 Visible Genetics Inc. METHOD AND KIT FOR THE CHARACTERIZATION OF ANTIBIOTIC-RESISTANCE MUTATIONS IN $i(MYCOBACTERIUM TUBERCULOSIS)
US20040110169A1 (en) * 2001-03-02 2004-06-10 Ecker David J. Method for rapid detection and identification of bioagents
WO2003031654A1 (en) * 2001-10-09 2003-04-17 Sj Hightech Co.,Ltd. Microarray comprising probes for mycobacteria species genotyping, m. tuberculosis strain differenciation, and antibiotic-resistant strain detection
WO2004061134A1 (en) * 2002-12-27 2004-07-22 University Of Medicine And Dentistry Of New Jersey Method for single nucleotide polymorphism detection
WO2006067454A1 (en) * 2004-12-23 2006-06-29 Health Protection Agency Detection of nucleic acid mutations

Also Published As

Publication number Publication date
EP2179041A2 (de) 2010-04-28
ZA201000218B (en) 2012-04-25
WO2009017902A3 (en) 2009-10-15
WO2009017902A2 (en) 2009-02-05

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Legal Events

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Effective date: 20101124

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