EP2179041A4 - Compositions and methods for identification of subspecies characteristics of mycobacterium tuberculosis - Google Patents

Compositions and methods for identification of subspecies characteristics of mycobacterium tuberculosis

Info

Publication number
EP2179041A4
EP2179041A4 EP08826817A EP08826817A EP2179041A4 EP 2179041 A4 EP2179041 A4 EP 2179041A4 EP 08826817 A EP08826817 A EP 08826817A EP 08826817 A EP08826817 A EP 08826817A EP 2179041 A4 EP2179041 A4 EP 2179041A4
Authority
EP
European Patent Office
Prior art keywords
subspecies
identification
compositions
characteristics
methods
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP08826817A
Other languages
German (de)
French (fr)
Other versions
EP2179041A2 (en
Inventor
Christian Massire
Rangarajan Sampath
Lawrence B Blyn
David J Ecker
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Ibis Biosciences Inc
Original Assignee
Ibis Biosciences Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority to US94585007P priority Critical
Priority to US3788408P priority
Application filed by Ibis Biosciences Inc filed Critical Ibis Biosciences Inc
Priority to PCT/US2008/067911 priority patent/WO2009017902A2/en
Publication of EP2179041A2 publication Critical patent/EP2179041A2/en
Publication of EP2179041A4 publication Critical patent/EP2179041A4/en
Application status is Withdrawn legal-status Critical

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/686Polymerase chain reaction [PCR]
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2565/00Nucleic acid analysis characterised by mode or means of detection
    • C12Q2565/60Detection means characterised by use of a special device
    • C12Q2565/627Detection means characterised by use of a special device being a mass spectrometer
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/156Polymorphic or mutational markers
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/16Primer sets for multiplex assays
EP08826817A 2007-06-22 2008-06-23 Compositions and methods for identification of subspecies characteristics of mycobacterium tuberculosis Withdrawn EP2179041A4 (en)

Priority Applications (3)

Application Number Priority Date Filing Date Title
US94585007P true 2007-06-22 2007-06-22
US3788408P true 2008-03-19 2008-03-19
PCT/US2008/067911 WO2009017902A2 (en) 2007-06-22 2008-06-23 Compositions and methods for identification of subspecies characteristics of mycobacterium tuberculosis

Publications (2)

Publication Number Publication Date
EP2179041A2 EP2179041A2 (en) 2010-04-28
EP2179041A4 true EP2179041A4 (en) 2010-12-22

Family

ID=40305160

Family Applications (1)

Application Number Title Priority Date Filing Date
EP08826817A Withdrawn EP2179041A4 (en) 2007-06-22 2008-06-23 Compositions and methods for identification of subspecies characteristics of mycobacterium tuberculosis

Country Status (3)

Country Link
EP (1) EP2179041A4 (en)
WO (1) WO2009017902A2 (en)
ZA (1) ZA201000218B (en)

Families Citing this family (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US9598724B2 (en) 2007-06-01 2017-03-21 Ibis Biosciences, Inc. Methods and compositions for multiple displacement amplification of nucleic acids
EP2957641B1 (en) 2009-10-15 2017-05-17 Ibis Biosciences, Inc. Multiple displacement amplification
WO2011140237A2 (en) * 2010-05-04 2011-11-10 The Government Of The Usa Of America As Represented By The Secretary Of The Department Of Health And Human Services, Centers For Disease Control And Prevention Process for detection of multidrug resistant tuberculosis using real-time pcr and high resolution melt analysis
GB201203903D0 (en) * 2012-03-06 2012-04-18 Vela Operations Pte Ltd Real-time PCR detection of mycobacterium tuberculosis complex

Citations (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5658733A (en) * 1994-04-18 1997-08-19 Mayo Foundation For Medical Education And Research Detection of isoniazid resistant strains of M. tuberculosis
US5851763A (en) * 1992-09-17 1998-12-22 Institut Pasteur Rapid detection of antibiotic resistance in mycobacterium tuberculosis
WO2000036142A1 (en) * 1998-12-11 2000-06-22 Visible Genetics Inc. METHOD AND KIT FOR THE CHARACTERIZATION OF ANTIBIOTIC-RESISTANCE MUTATIONS IN $i(MYCOBACTERIUM TUBERCULOSIS)
WO2003031654A1 (en) * 2001-10-09 2003-04-17 Sj Hightech Co.,Ltd. Microarray comprising probes for mycobacteria species genotyping, m. tuberculosis strain differenciation, and antibiotic-resistant strain detection
US20040110169A1 (en) * 2001-03-02 2004-06-10 Ecker David J. Method for rapid detection and identification of bioagents
WO2004061134A1 (en) * 2002-12-27 2004-07-22 University Of Medicine And Dentistry Of New Jersey Method for single nucleotide polymorphism detection
WO2006067454A1 (en) * 2004-12-23 2006-06-29 Health Protection Agency Detection of nucleic acid mutations

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6892139B2 (en) * 1999-01-29 2005-05-10 The Regents Of The University Of California Determining the functions and interactions of proteins by comparative analysis
JP3565752B2 (en) * 1999-11-02 2004-09-15 株式会社海洋バイオテクノロジー研究所 Characteristic identification of slow growing mycobacteria with base sequences and specific detection methods present in the Dna gyrase gene

Patent Citations (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5851763A (en) * 1992-09-17 1998-12-22 Institut Pasteur Rapid detection of antibiotic resistance in mycobacterium tuberculosis
US5658733A (en) * 1994-04-18 1997-08-19 Mayo Foundation For Medical Education And Research Detection of isoniazid resistant strains of M. tuberculosis
WO2000036142A1 (en) * 1998-12-11 2000-06-22 Visible Genetics Inc. METHOD AND KIT FOR THE CHARACTERIZATION OF ANTIBIOTIC-RESISTANCE MUTATIONS IN $i(MYCOBACTERIUM TUBERCULOSIS)
US20040110169A1 (en) * 2001-03-02 2004-06-10 Ecker David J. Method for rapid detection and identification of bioagents
WO2003031654A1 (en) * 2001-10-09 2003-04-17 Sj Hightech Co.,Ltd. Microarray comprising probes for mycobacteria species genotyping, m. tuberculosis strain differenciation, and antibiotic-resistant strain detection
WO2004061134A1 (en) * 2002-12-27 2004-07-22 University Of Medicine And Dentistry Of New Jersey Method for single nucleotide polymorphism detection
WO2006067454A1 (en) * 2004-12-23 2006-06-29 Health Protection Agency Detection of nucleic acid mutations

Also Published As

Publication number Publication date
WO2009017902A3 (en) 2009-10-15
WO2009017902A2 (en) 2009-02-05
EP2179041A2 (en) 2010-04-28
ZA201000218B (en) 2012-04-25

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Legal Events

Date Code Title Description
17P Request for examination filed

Effective date: 20100122

AK Designated contracting states:

Kind code of ref document: A2

Designated state(s): AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MT NL NO PL PT RO SE SI SK TR

RAP1 Transfer of rights of an ep published application

Owner name: IBIS BIOSCIENCES, INC.

DAX Request for extension of the european patent (to any country) deleted
A4 Despatch of supplementary search report

Effective date: 20101124

RIC1 Classification (correction)

Ipc: C12N 15/31 20060101ALI20101118BHEP

Ipc: C12Q 1/68 20060101AFI20101118BHEP

18D Deemed to be withdrawn

Effective date: 20110224